Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049573.t1 | XP_013460468.1 | 94.5 | 219 | 12 | 0 | 2 | 220 | 6 | 224 | 8.00E-124 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049573.t1 | P25317 | 71.2 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 4.3e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049573.t1 | I3S5Q9 | 94.5 | 219 | 12 | 0 | 2 | 220 | 6 | 224 | 5.8e-124 | 453.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049573 | MS.gene05141 | 0.835599 | 1.53E-56 | -1.69E-46 |
| MS.gene049573 | MS.gene05142 | 0.899595 | 1.70E-77 | -1.69E-46 |
| MS.gene049573 | MS.gene051946 | 0.827843 | 1.25E-54 | -1.69E-46 |
| MS.gene049573 | MS.gene057014 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene049573 | MS.gene059547 | 0.814653 | 1.38E-51 | -1.69E-46 |
| MS.gene049573 | MS.gene07397 | 0.860752 | 1.66E-63 | -1.69E-46 |
| MS.gene049573 | MS.gene21575 | 0.810863 | 9.33E-51 | -1.69E-46 |
| MS.gene049573 | MS.gene28555 | 0.818677 | 1.73E-52 | -1.69E-46 |
| MS.gene049573 | MS.gene44720 | 0.800677 | 1.29E-48 | -1.69E-46 |
| MS.gene049573 | MS.gene44950 | 0.820493 | 6.66E-53 | -1.69E-46 |
| MS.gene049573 | MS.gene47109 | 0.817202 | 3.73E-52 | -1.69E-46 |
| MS.gene049573 | MS.gene52935 | 0.834542 | 2.82E-56 | -1.69E-46 |
| MS.gene049573 | MS.gene52937 | 0.861729 | 8.36E-64 | -1.69E-46 |
| MS.gene049573 | MS.gene71614 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene049573 | MS.gene76146 | 0.817698 | 2.88E-52 | -1.69E-46 |
| MS.gene049573 | MS.gene85220 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene049573 | MS.gene85568 | 0.827638 | 1.40E-54 | -1.69E-46 |
| MS.gene049573 | MS.gene86921 | 0.821171 | 4.65E-53 | -1.69E-46 |
| MS.gene049573 | MS.gene88914 | 0.830414 | 2.98E-55 | -1.69E-46 |
| MS.gene049573 | MS.gene96692 | 0.823981 | 1.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049573.t1 | MTR_3g467420 | 94.521 | 219 | 12 | 0 | 2 | 220 | 6 | 224 | 1.10e-157 | 435 |
| MS.gene049573.t1 | MTR_3g467430 | 88.182 | 220 | 26 | 0 | 1 | 220 | 5 | 224 | 4.26e-146 | 406 |
| MS.gene049573.t1 | MTR_2g070180 | 62.381 | 210 | 79 | 0 | 6 | 215 | 5 | 214 | 2.44e-102 | 295 |
| MS.gene049573.t1 | MTR_2g070150 | 66.500 | 200 | 67 | 0 | 6 | 205 | 5 | 204 | 4.33e-102 | 294 |
| MS.gene049573.t1 | MTR_2g070140 | 64.039 | 203 | 73 | 0 | 18 | 220 | 1 | 203 | 2.15e-100 | 290 |
| MS.gene049573.t1 | MTR_2g070130 | 60.000 | 215 | 86 | 0 | 6 | 220 | 5 | 219 | 2.02e-98 | 285 |
| MS.gene049573.t1 | MTR_2g070210 | 62.212 | 217 | 80 | 1 | 6 | 220 | 5 | 221 | 2.19e-98 | 285 |
| MS.gene049573.t1 | MTR_2g070060 | 59.535 | 215 | 87 | 0 | 6 | 220 | 5 | 219 | 3.78e-98 | 285 |
| MS.gene049573.t1 | MTR_2g070200 | 62.500 | 216 | 79 | 2 | 6 | 219 | 5 | 220 | 1.37e-93 | 273 |
| MS.gene049573.t1 | MTR_2g070070 | 60.829 | 217 | 85 | 0 | 4 | 220 | 3 | 219 | 4.59e-93 | 271 |
| MS.gene049573.t1 | MTR_2g070110 | 59.447 | 217 | 87 | 1 | 4 | 220 | 3 | 218 | 1.60e-90 | 265 |
| MS.gene049573.t1 | MTR_8g056940 | 53.636 | 220 | 101 | 1 | 1 | 220 | 1 | 219 | 5.61e-88 | 259 |
| MS.gene049573.t1 | MTR_2g070120 | 56.279 | 215 | 94 | 0 | 6 | 220 | 5 | 219 | 9.69e-88 | 258 |
| MS.gene049573.t1 | MTR_4g124130 | 54.338 | 219 | 99 | 1 | 3 | 220 | 2 | 220 | 7.28e-86 | 253 |
| MS.gene049573.t1 | MTR_5g076900 | 49.550 | 222 | 109 | 3 | 1 | 220 | 1 | 221 | 7.68e-78 | 233 |
| MS.gene049573.t1 | MTR_0186s0030 | 54.930 | 142 | 63 | 1 | 1 | 142 | 1 | 141 | 2.16e-53 | 168 |
| MS.gene049573.t1 | MTR_8g087425 | 38.739 | 222 | 132 | 3 | 1 | 219 | 1 | 221 | 5.60e-47 | 155 |
| MS.gene049573.t1 | MTR_7g065720 | 40.465 | 215 | 122 | 5 | 6 | 216 | 8 | 220 | 4.80e-46 | 152 |
| MS.gene049573.t1 | MTR_1g090060 | 40.376 | 213 | 120 | 4 | 1 | 209 | 1 | 210 | 7.17e-46 | 152 |
| MS.gene049573.t1 | MTR_8g061950 | 38.596 | 228 | 123 | 5 | 1 | 214 | 1 | 225 | 7.56e-46 | 152 |
| MS.gene049573.t1 | MTR_5g037380 | 41.256 | 223 | 116 | 5 | 1 | 211 | 1 | 220 | 8.06e-46 | 152 |
| MS.gene049573.t1 | MTR_7g065270 | 43.878 | 196 | 104 | 6 | 14 | 206 | 16 | 208 | 8.74e-46 | 152 |
| MS.gene049573.t1 | MTR_7g065660 | 38.942 | 208 | 122 | 4 | 5 | 209 | 7 | 212 | 1.51e-44 | 148 |
| MS.gene049573.t1 | MTR_3g099757 | 42.308 | 208 | 117 | 3 | 1 | 206 | 1 | 207 | 2.56e-44 | 148 |
| MS.gene049573.t1 | MTR_7g065740 | 38.863 | 211 | 123 | 4 | 3 | 209 | 5 | 213 | 4.88e-44 | 147 |
| MS.gene049573.t1 | MTR_8g087410 | 41.379 | 203 | 116 | 2 | 1 | 201 | 2 | 203 | 9.27e-44 | 146 |
| MS.gene049573.t1 | MTR_7g065265 | 43.719 | 199 | 107 | 5 | 14 | 209 | 16 | 212 | 3.48e-43 | 145 |
| MS.gene049573.t1 | MTR_7g065290 | 41.063 | 207 | 117 | 5 | 14 | 217 | 16 | 220 | 4.04e-43 | 145 |
| MS.gene049573.t1 | MTR_4g019790 | 38.095 | 210 | 125 | 4 | 3 | 209 | 5 | 212 | 7.69e-43 | 144 |
| MS.gene049573.t1 | MTR_4g019780 | 38.889 | 216 | 122 | 6 | 1 | 209 | 1 | 213 | 1.21e-42 | 143 |
| MS.gene049573.t1 | MTR_7g065590 | 40.704 | 199 | 113 | 5 | 14 | 209 | 16 | 212 | 6.48e-42 | 142 |
| MS.gene049573.t1 | MTR_7g065630 | 38.756 | 209 | 123 | 5 | 2 | 209 | 22 | 226 | 1.48e-41 | 141 |
| MS.gene049573.t1 | MTR_5g040430 | 34.450 | 209 | 129 | 3 | 4 | 205 | 6 | 213 | 1.59e-41 | 140 |
| MS.gene049573.t1 | MTR_4g059730 | 39.409 | 203 | 118 | 3 | 11 | 209 | 10 | 211 | 8.68e-41 | 139 |
| MS.gene049573.t1 | MTR_7g065750 | 38.073 | 218 | 124 | 6 | 6 | 216 | 8 | 221 | 9.00e-41 | 139 |
| MS.gene049573.t1 | MTR_7g065230 | 41.176 | 204 | 111 | 6 | 6 | 207 | 8 | 204 | 1.82e-40 | 138 |
| MS.gene049573.t1 | MTR_1g090150 | 38.835 | 206 | 119 | 5 | 5 | 206 | 3 | 205 | 2.04e-40 | 138 |
| MS.gene049573.t1 | MTR_7g065600 | 39.000 | 200 | 117 | 4 | 5 | 201 | 7 | 204 | 4.88e-40 | 137 |
| MS.gene049573.t1 | MTR_1g090100 | 38.571 | 210 | 124 | 3 | 5 | 210 | 2 | 210 | 9.46e-40 | 136 |
| MS.gene049573.t1 | MTR_7g065710 | 38.071 | 197 | 117 | 5 | 14 | 209 | 13 | 205 | 1.52e-39 | 135 |
| MS.gene049573.t1 | MTR_6g080440 | 37.255 | 204 | 120 | 5 | 19 | 216 | 17 | 218 | 2.93e-39 | 135 |
| MS.gene049573.t1 | MTR_1g090070 | 37.255 | 204 | 122 | 4 | 12 | 210 | 16 | 218 | 1.95e-38 | 133 |
| MS.gene049573.t1 | MTR_7g065260 | 41.148 | 209 | 117 | 6 | 14 | 219 | 23 | 228 | 5.54e-38 | 132 |
| MS.gene049573.t1 | MTR_7g065700 | 39.904 | 208 | 120 | 5 | 3 | 209 | 5 | 208 | 1.14e-37 | 131 |
| MS.gene049573.t1 | MTR_7g065680 | 39.594 | 197 | 114 | 5 | 14 | 209 | 16 | 208 | 5.58e-37 | 129 |
| MS.gene049573.t1 | MTR_1g090090 | 38.498 | 213 | 124 | 5 | 1 | 209 | 1 | 210 | 1.45e-36 | 128 |
| MS.gene049573.t1 | MTR_1g115195 | 37.931 | 203 | 120 | 5 | 4 | 201 | 2 | 203 | 3.76e-35 | 124 |
| MS.gene049573.t1 | MTR_7g065640 | 33.654 | 208 | 119 | 4 | 3 | 209 | 5 | 194 | 5.72e-34 | 120 |
| MS.gene049573.t1 | MTR_2g072120 | 58.824 | 68 | 28 | 0 | 48 | 115 | 1 | 68 | 6.81e-25 | 93.6 |
| MS.gene049573.t1 | MTR_7g100320 | 28.718 | 195 | 128 | 7 | 16 | 206 | 37 | 224 | 2.41e-14 | 70.1 |
| MS.gene049573.t1 | MTR_4g043640 | 57.143 | 42 | 18 | 0 | 149 | 190 | 44 | 85 | 8.89e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049573.t1 | AT1G17180 | 63.721 | 215 | 78 | 0 | 6 | 220 | 5 | 219 | 7.15e-103 | 296 |
| MS.gene049573.t1 | AT1G78370 | 61.137 | 211 | 82 | 0 | 7 | 217 | 6 | 216 | 1.13e-101 | 293 |
| MS.gene049573.t1 | AT1G78380 | 60.849 | 212 | 83 | 0 | 4 | 215 | 3 | 214 | 1.95e-99 | 288 |
| MS.gene049573.t1 | AT1G17170 | 61.860 | 215 | 81 | 1 | 6 | 220 | 5 | 218 | 3.23e-97 | 282 |
| MS.gene049573.t1 | AT1G78360 | 58.716 | 218 | 89 | 1 | 4 | 220 | 3 | 220 | 2.08e-94 | 275 |
| MS.gene049573.t1 | AT1G78340 | 56.667 | 210 | 91 | 0 | 6 | 215 | 5 | 214 | 1.70e-91 | 268 |
| MS.gene049573.t1 | AT1G53680 | 56.221 | 217 | 93 | 2 | 6 | 220 | 8 | 224 | 1.20e-89 | 263 |
| MS.gene049573.t1 | AT1G78320 | 59.314 | 204 | 83 | 0 | 3 | 206 | 2 | 205 | 1.62e-87 | 258 |
| MS.gene049573.t1 | AT1G17190 | 51.835 | 218 | 105 | 0 | 1 | 218 | 1 | 218 | 3.41e-81 | 242 |
| MS.gene049573.t1 | AT3G43800 | 52.036 | 221 | 102 | 3 | 1 | 217 | 1 | 221 | 3.42e-81 | 242 |
| MS.gene049573.t1 | AT1G78320 | 51.471 | 204 | 72 | 1 | 3 | 206 | 2 | 178 | 6.34e-70 | 212 |
| MS.gene049573.t1 | AT2G29420 | 41.919 | 198 | 112 | 3 | 6 | 201 | 10 | 206 | 1.01e-49 | 162 |
| MS.gene049573.t1 | AT1G10360 | 41.364 | 220 | 121 | 4 | 1 | 212 | 1 | 220 | 6.09e-49 | 160 |
| MS.gene049573.t1 | AT3G09270 | 38.647 | 207 | 124 | 2 | 3 | 206 | 4 | 210 | 9.56e-46 | 151 |
| MS.gene049573.t1 | AT1G74590 | 36.406 | 217 | 130 | 4 | 6 | 215 | 8 | 223 | 7.52e-45 | 149 |
| MS.gene049573.t1 | AT1G10370 | 40.000 | 225 | 113 | 5 | 1 | 210 | 1 | 218 | 1.05e-44 | 149 |
| MS.gene049573.t1 | AT1G59700 | 39.437 | 213 | 120 | 4 | 6 | 209 | 7 | 219 | 3.79e-43 | 145 |
| MS.gene049573.t1 | AT5G62480 | 38.140 | 215 | 120 | 4 | 2 | 205 | 5 | 217 | 5.91e-43 | 145 |
| MS.gene049573.t1 | AT1G69930 | 37.736 | 212 | 125 | 3 | 6 | 210 | 13 | 224 | 4.43e-42 | 142 |
| MS.gene049573.t1 | AT1G27130 | 35.586 | 222 | 133 | 5 | 1 | 212 | 1 | 222 | 1.03e-41 | 141 |
| MS.gene049573.t1 | AT2G29440 | 40.887 | 203 | 108 | 7 | 6 | 201 | 7 | 204 | 9.46e-41 | 139 |
| MS.gene049573.t1 | AT1G59670 | 38.532 | 218 | 125 | 5 | 6 | 214 | 7 | 224 | 1.70e-40 | 138 |
| MS.gene049573.t1 | AT2G29490 | 36.893 | 206 | 126 | 2 | 3 | 205 | 5 | 209 | 2.80e-40 | 137 |
| MS.gene049573.t1 | AT2G29480 | 37.931 | 203 | 120 | 4 | 3 | 201 | 5 | 205 | 3.88e-40 | 137 |
| MS.gene049573.t1 | AT2G29450 | 38.288 | 222 | 122 | 8 | 1 | 213 | 1 | 216 | 1.53e-39 | 135 |
| MS.gene049573.t1 | AT1G27140 | 34.375 | 224 | 134 | 6 | 1 | 212 | 1 | 223 | 3.76e-38 | 132 |
| MS.gene049573.t1 | AT2G29470 | 36.538 | 208 | 125 | 5 | 3 | 205 | 5 | 210 | 4.18e-37 | 129 |
| MS.gene049573.t1 | AT2G29460 | 36.453 | 203 | 123 | 4 | 3 | 201 | 5 | 205 | 2.89e-35 | 124 |
| MS.gene049573.t1 | AT1G69920 | 29.767 | 215 | 142 | 4 | 5 | 210 | 34 | 248 | 9.37e-31 | 114 |
| MS.gene049573.t1 | AT5G62480 | 30.233 | 215 | 111 | 5 | 2 | 205 | 5 | 191 | 6.07e-24 | 95.1 |
| MS.gene049573.t1 | AT5G62480 | 30.233 | 215 | 110 | 5 | 2 | 205 | 5 | 190 | 6.46e-24 | 95.1 |
| MS.gene049573.t1 | AT5G02790 | 30.065 | 153 | 100 | 4 | 55 | 206 | 80 | 226 | 5.62e-11 | 60.5 |
Find 46 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGAGACAAAACATATTT+TGG | 0.170928 | 3.2:+58255555 | MS.gene049573:CDS |
| AGCGATCACAAGCCAAGTTT+TGG | 0.291618 | 3.2:+58254617 | MS.gene049573:CDS |
| CCTCATCCTCACAAAATCTA+TGG | 0.303260 | 3.2:+58255738 | MS.gene049573:CDS |
| CTCTTATACCCTTCACTAGT+TGG | 0.329236 | 3.2:+58255607 | MS.gene049573:CDS |
| TTTCCATTATGAATCAAAAT+CGG | 0.338158 | 3.2:-58254508 | None:intergenic |
| TTGGCTTGTGATCGCTTGTA+AGG | 0.379033 | 3.2:-58254610 | None:intergenic |
| ATGTCCTAAGCTTGTGGCTT+GGG | 0.384787 | 3.2:+58255674 | MS.gene049573:CDS |
| ATATTAAGTGATTCACATAT+AGG | 0.400119 | 3.2:-58254532 | None:intergenic |
| TTCCATTATGAATCAAAATC+GGG | 0.401812 | 3.2:-58254507 | None:intergenic |
| TTGGCCCAAGCCACAAGCTT+AGG | 0.419595 | 3.2:-58255678 | None:intergenic |
| GAATGCTTGAAGACTCTAGA+AGG | 0.458394 | 3.2:+58255528 | MS.gene049573:CDS |
| AGCTTGTGGCTTGGGCCAAA+AGG | 0.465671 | 3.2:+58255682 | MS.gene049573:CDS |
| TTGAGTACATTGATGAAGCT+TGG | 0.466341 | 3.2:+58254557 | MS.gene049573:CDS |
| TTTACACTTACGAGACATAT+GGG | 0.474634 | 3.2:+58255631 | MS.gene049573:CDS |
| GATATACAACATTGGAAAGA+AGG | 0.483460 | 3.2:+58255455 | MS.gene049573:intron |
| AATGTAATCTCCCCAAAACT+TGG | 0.487995 | 3.2:-58254629 | None:intergenic |
| ACTCTCATTCCATATGAGCT+TGG | 0.497119 | 3.2:-58254379 | None:intergenic |
| AAGACTCTAGAAGGTGAGCT+TGG | 0.503893 | 3.2:+58255537 | MS.gene049573:CDS |
| GGCCAAAAGGTGTATGGAAA+AGG | 0.504837 | 3.2:+58255695 | MS.gene049573:CDS |
| AAAATTGCATTGGAAGAGAA+GGG | 0.514397 | 3.2:+58254403 | MS.gene049573:CDS |
| AAGAAGGTATGGACAGGAAA+GGG | 0.519335 | 3.2:+58255471 | MS.gene049573:CDS |
| AATGAGAGTGAAAATTGCAT+TGG | 0.532849 | 3.2:+58254393 | MS.gene049573:CDS |
| AATGTCCTAAGCTTGTGGCT+TGG | 0.535005 | 3.2:+58255673 | MS.gene049573:CDS |
| ACAACATTGGAAAGAAGGTA+TGG | 0.535319 | 3.2:+58255460 | MS.gene049573:CDS |
| AAGGGTGAAGAACAAGAAGA+AGG | 0.543295 | 3.2:+58255489 | MS.gene049573:CDS |
| TGACTTTGGGTATGTTGATG+TGG | 0.546781 | 3.2:+58255584 | MS.gene049573:CDS |
| GAAAATTGCATTGGAAGAGA+AGG | 0.550919 | 3.2:+58254402 | MS.gene049573:CDS |
| GGCTTGGGCCAAAAGGTGTA+TGG | 0.551448 | 3.2:+58255689 | MS.gene049573:CDS |
| AGTGTAAAACCAACTAGTGA+AGG | 0.558553 | 3.2:-58255616 | None:intergenic |
| ATTGGAAAGAAGGTATGGAC+AGG | 0.560806 | 3.2:+58255465 | MS.gene049573:CDS |
| ATGCAATATAAACAAAGCCA+TGG | 0.568014 | 3.2:+58255768 | MS.gene049573:CDS |
| TGATCGCTTGTAAGGGTCAG+AGG | 0.571746 | 3.2:-58254602 | None:intergenic |
| AATGAGTCAATATATGGCTG+AGG | 0.585478 | 3.2:+58254330 | None:intergenic |
| GGGTCAGAGGGCAAAAGAGA+AGG | 0.589806 | 3.2:-58254589 | None:intergenic |
| TGGCTTGTGATCGCTTGTAA+GGG | 0.589840 | 3.2:-58254609 | None:intergenic |
| GTGTATGGAAAAGGAGAGTG+TGG | 0.593764 | 3.2:+58255704 | MS.gene049573:CDS |
| GAAAGAATGTCCTAAGCTTG+TGG | 0.598040 | 3.2:+58255668 | MS.gene049573:CDS |
| ACAATCTCTAATCAAGTCCA+TGG | 0.605356 | 3.2:-58255785 | None:intergenic |
| ATGAGTCAATATATGGCTGA+GGG | 0.621155 | 3.2:+58254331 | None:intergenic |
| AAAGAAGGTATGGACAGGAA+AGG | 0.623553 | 3.2:+58255470 | MS.gene049573:CDS |
| GTGTAAAACCAACTAGTGAA+GGG | 0.625155 | 3.2:-58255615 | None:intergenic |
| TTGATGTAGATATACAACAT+TGG | 0.625837 | 3.2:+58255447 | MS.gene049573:intron |
| GATCGCTTGTAAGGGTCAGA+GGG | 0.649504 | 3.2:-58254601 | None:intergenic |
| AAATTGCATTGGAAGAGAAG+GGG | 0.654003 | 3.2:+58254404 | MS.gene049573:CDS |
| AATTGCATTGGAAGAGAAGG+GGG | 0.673032 | 3.2:+58254405 | MS.gene049573:CDS |
| ATATATGGCTGAGGGCAATG+TGG | 0.718578 | 3.2:+58254339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTAAAAAAATTATATGTT+TGG | - | chr3.2:58255384-58255403 | None:intergenic | 10.0% |
| !!! | TTTAATAGATAGATTTTTAT+AGG | + | chr3.2:58254793-58254812 | MS.gene049573:intron | 10.0% |
| !!! | AAATATTGGTAGTTTAATAA+GGG | + | chr3.2:58254817-58254836 | MS.gene049573:intron | 15.0% |
| !! | ATATTAAGTGATTCACATAT+AGG | - | chr3.2:58254535-58254554 | None:intergenic | 20.0% |
| !! | CAAATATGCTACAATATTTA+TGG | - | chr3.2:58255222-58255241 | None:intergenic | 20.0% |
| !! | CATAAATATTGTAGCATATT+TGG | + | chr3.2:58255220-58255239 | MS.gene049573:intron | 20.0% |
| !! | TATCTACTTAAGCATTAATA+TGG | - | chr3.2:58255109-58255128 | None:intergenic | 20.0% |
| !! | TTTCCATTATGAATCAAAAT+CGG | - | chr3.2:58254511-58254530 | None:intergenic | 20.0% |
| !!! | AATATTGGTAGTTTAATAAG+GGG | + | chr3.2:58254818-58254837 | MS.gene049573:intron | 20.0% |
| !!! | AGATTTTTATAGGCAAATAT+TGG | + | chr3.2:58254803-58254822 | MS.gene049573:intron | 20.0% |
| !!! | CAAATATTGGTAGTTTAATA+AGG | + | chr3.2:58254816-58254835 | MS.gene049573:intron | 20.0% |
| !!! | CAAGTCTTGATTATTTTTTT+TGG | + | chr3.2:58254964-58254983 | MS.gene049573:intron | 20.0% |
| !!! | TCTTGATTATTTTTTTTGGT+TGG | + | chr3.2:58254968-58254987 | MS.gene049573:intron | 20.0% |
| !!! | TTTTAAAGAGTTGATTCATA+GGG | + | chr3.2:58255396-58255415 | MS.gene049573:intron | 20.0% |
| !!! | TTTTTAAAGAGTTGATTCAT+AGG | + | chr3.2:58255395-58255414 | MS.gene049573:intron | 20.0% |
| ! | CAATTTACAATTTACATGAG+AGG | + | chr3.2:58255312-58255331 | MS.gene049573:intron | 25.0% |
| ! | TTCCATTATGAATCAAAATC+GGG | - | chr3.2:58254510-58254529 | None:intergenic | 25.0% |
| ! | TTGATGTAGATATACAACAT+TGG | + | chr3.2:58255447-58255466 | MS.gene049573:intron | 25.0% |
| !! | TATGTGTGTTATTATGTTCA+AGG | + | chr3.2:58254679-58254698 | MS.gene049573:intron | 25.0% |
| !!! | TGACCTATTTTCTTTTTCAA+CGG | - | chr3.2:58255151-58255170 | None:intergenic | 25.0% |
| AAAATTGCATTGGAAGAGAA+GGG | + | chr3.2:58254403-58254422 | MS.gene049573:CDS | 30.0% | |
| AATGAGAGTGAAAATTGCAT+TGG | + | chr3.2:58254393-58254412 | MS.gene049573:CDS | 30.0% | |
| ATGCAATATAAACAAAGCCA+TGG | + | chr3.2:58255768-58255787 | MS.gene049573:CDS | 30.0% | |
| ATTGTAAATTGTTTGCCACT+TGG | - | chr3.2:58255303-58255322 | None:intergenic | 30.0% | |
| CAAGACTTGACTATTCATAA+AGG | - | chr3.2:58254953-58254972 | None:intergenic | 30.0% | |
| CTTCCGTTGAAAAAGAAAAT+AGG | + | chr3.2:58255145-58255164 | MS.gene049573:intron | 30.0% | |
| GAAAAAAATGTAGTTGAGAG+TGG | - | chr3.2:58255084-58255103 | None:intergenic | 30.0% | |
| GATATACAACATTGGAAAGA+AGG | + | chr3.2:58255455-58255474 | MS.gene049573:intron | 30.0% | |
| GGTATCATGGTCTAATTTAT+TGG | + | chr3.2:58255417-58255436 | MS.gene049573:intron | 30.0% | |
| TAGTGATGTCTATAAAGCTT+TGG | - | chr3.2:58254724-58254743 | None:intergenic | 30.0% | |
| TTCATAAAGGTTGTCTATGA+AGG | - | chr3.2:58254940-58254959 | None:intergenic | 30.0% | |
| TTTACACTTACGAGACATAT+GGG | + | chr3.2:58255631-58255650 | MS.gene049573:CDS | 30.0% | |
| ! | CTTGGAGACAAAACATATTT+TGG | + | chr3.2:58255555-58255574 | MS.gene049573:CDS | 30.0% |
| ! | TTGTAAATTGTTTGCCACTT+GGG | - | chr3.2:58255302-58255321 | None:intergenic | 30.0% |
| ! | TTTTACACTTACGAGACATA+TGG | + | chr3.2:58255630-58255649 | MS.gene049573:CDS | 30.0% |
| !!! | ATCCCGATTTTGATTCATAA+TGG | + | chr3.2:58254505-58254524 | MS.gene049573:CDS | 30.0% |
| !!! | ATGTGGTTTTGTTGGATTTT+TGG | + | chr3.2:58254356-58254375 | MS.gene049573:CDS | 30.0% |
| AAATTGCATTGGAAGAGAAG+GGG | + | chr3.2:58254404-58254423 | MS.gene049573:CDS | 35.0% | |
| AATGTAATCTCCCCAAAACT+TGG | - | chr3.2:58254632-58254651 | None:intergenic | 35.0% | |
| ACAACATTGGAAAGAAGGTA+TGG | + | chr3.2:58255460-58255479 | MS.gene049573:CDS | 35.0% | |
| AGTGTAAAACCAACTAGTGA+AGG | - | chr3.2:58255619-58255638 | None:intergenic | 35.0% | |
| ATGATCGATCGTTAAGAATG+AGG | - | chr3.2:58254886-58254905 | None:intergenic | 35.0% | |
| CAAAATTAGTCCGACAAAGA+TGG | - | chr3.2:58255019-58255038 | None:intergenic | 35.0% | |
| GAAAATTGCATTGGAAGAGA+AGG | + | chr3.2:58254402-58254421 | MS.gene049573:CDS | 35.0% | |
| GTGTAAAACCAACTAGTGAA+GGG | - | chr3.2:58255618-58255637 | None:intergenic | 35.0% | |
| TTGAGTACATTGATGAAGCT+TGG | + | chr3.2:58254557-58254576 | MS.gene049573:CDS | 35.0% | |
| ! | AGTTGATTCATAGGGTATCA+TGG | + | chr3.2:58255404-58255423 | MS.gene049573:intron | 35.0% |
| ! | ATCGGGATCATTTTGTAAAC+CGG | - | chr3.2:58254493-58254512 | None:intergenic | 35.0% |
| ! | CATCTTTGTCGGACTAATTT+TGG | + | chr3.2:58255017-58255036 | MS.gene049573:intron | 35.0% |
| ! | GCAAAACCATAGATTTTGTG+AGG | - | chr3.2:58255747-58255766 | None:intergenic | 35.0% |
| !! | ATTTTGGTGGAGATGACTTT+GGG | + | chr3.2:58255571-58255590 | MS.gene049573:CDS | 35.0% |
| !! | GGAGACAAAACATATTTTGG+TGG | + | chr3.2:58255558-58255577 | MS.gene049573:CDS | 35.0% |
| !!! | TATTTTGGTGGAGATGACTT+TGG | + | chr3.2:58255570-58255589 | MS.gene049573:CDS | 35.0% |
| !!! | TTTTTGGTTGGTCACGTTAT+TGG | + | chr3.2:58254980-58254999 | MS.gene049573:intron | 35.0% |
| AACTGGAAACCCACTAAAAG+TGG | - | chr3.2:58255060-58255079 | None:intergenic | 40.0% | |
| AAGGGTGAAGAACAAGAAGA+AGG | + | chr3.2:58255489-58255508 | MS.gene049573:CDS | 40.0% | |
| AATTAGTCCGACAAAGATGG+TGG | - | chr3.2:58255016-58255035 | None:intergenic | 40.0% | |
| AATTGCATTGGAAGAGAAGG+GGG | + | chr3.2:58254405-58254424 | MS.gene049573:CDS | 40.0% | |
| ACTCTCATTCCATATGAGCT+TGG | - | chr3.2:58254382-58254401 | None:intergenic | 40.0% | |
| ATGTAGTTGAGAGTGGAAAC+TGG | - | chr3.2:58255077-58255096 | None:intergenic | 40.0% | |
| CCTCATCCTCACAAAATCTA+TGG | + | chr3.2:58255738-58255757 | MS.gene049573:CDS | 40.0% | |
| CTCTTATACCCTTCACTAGT+TGG | + | chr3.2:58255607-58255626 | MS.gene049573:CDS | 40.0% | |
| GAAAGAATGTCCTAAGCTTG+TGG | + | chr3.2:58255668-58255687 | MS.gene049573:CDS | 40.0% | |
| GAATGCTTGAAGACTCTAGA+AGG | + | chr3.2:58255528-58255547 | MS.gene049573:CDS | 40.0% | |
| GATCGTTAAGAATGAGGTCT+AGG | - | chr3.2:58254880-58254899 | None:intergenic | 40.0% | |
| TATATCCATTCAAGCCCAAG+TGG | + | chr3.2:58255285-58255304 | MS.gene049573:intron | 40.0% | |
| TGACTTTGGGTATGTTGATG+TGG | + | chr3.2:58255584-58255603 | MS.gene049573:CDS | 40.0% | |
| ! | AAAGAAGGTATGGACAGGAA+AGG | + | chr3.2:58255470-58255489 | MS.gene049573:CDS | 40.0% |
| ! | AAGAAGGTATGGACAGGAAA+GGG | + | chr3.2:58255471-58255490 | MS.gene049573:CDS | 40.0% |
| ! | AGGGCAAAAGAGAAGGTTTT+TGG | - | chr3.2:58254585-58254604 | None:intergenic | 40.0% |
| ! | ATTGGAAAGAAGGTATGGAC+AGG | + | chr3.2:58255465-58255484 | MS.gene049573:CDS | 40.0% |
| ! | CCATAGATTTTGTGAGGATG+AGG | - | chr3.2:58255741-58255760 | None:intergenic | 40.0% |
| ! | CTCCTTTTCCATACACCTTT+TGG | - | chr3.2:58255700-58255719 | None:intergenic | 40.0% |
| ! | GAAGTATCCACCATCTTTGT+CGG | + | chr3.2:58255006-58255025 | MS.gene049573:intron | 40.0% |
| ! | TCGGGATCATTTTGTAAACC+GGG | - | chr3.2:58254492-58254511 | None:intergenic | 40.0% |
| !! | CTAATTTTGGCCGGAGATTA+TGG | + | chr3.2:58255030-58255049 | MS.gene049573:intron | 40.0% |
| !! | TCTGCTTTTAGAGATGAACC+CGG | + | chr3.2:58254471-58254490 | MS.gene049573:CDS | 40.0% |
| !! | TTTGTCGGACTAATTTTGGC+CGG | + | chr3.2:58255021-58255040 | MS.gene049573:intron | 40.0% |
| !!! | GATTTTTGGCCAAGCTCATA+TGG | + | chr3.2:58254370-58254389 | MS.gene049573:CDS | 40.0% |
| !!! | TATGGCTAGCCACTTTTAGT+GGG | + | chr3.2:58255048-58255067 | MS.gene049573:intron | 40.0% |
| !!! | TTATGGCTAGCCACTTTTAG+TGG | + | chr3.2:58255047-58255066 | MS.gene049573:intron | 40.0% |
| AATGTCCTAAGCTTGTGGCT+TGG | + | chr3.2:58255673-58255692 | MS.gene049573:CDS | 45.0% | |
| ATGTCCTAAGCTTGTGGCTT+GGG | + | chr3.2:58255674-58255693 | MS.gene049573:CDS | 45.0% | |
| GTGTATGGAAAAGGAGAGTG+TGG | + | chr3.2:58255704-58255723 | MS.gene049573:CDS | 45.0% | |
| ! | AAGACTCTAGAAGGTGAGCT+TGG | + | chr3.2:58255537-58255556 | MS.gene049573:CDS | 45.0% |
| ! | AAGTGGCTAGCCATAATCTC+CGG | - | chr3.2:58255043-58255062 | None:intergenic | 45.0% |
| ! | AGCGATCACAAGCCAAGTTT+TGG | + | chr3.2:58254617-58254636 | MS.gene049573:CDS | 45.0% |
| ! | CGATCACAAGCCAAGTTTTG+GGG | + | chr3.2:58254619-58254638 | MS.gene049573:CDS | 45.0% |
| ! | GCGATCACAAGCCAAGTTTT+GGG | + | chr3.2:58254618-58254637 | MS.gene049573:CDS | 45.0% |
| ! | GGCCAAAAGGTGTATGGAAA+AGG | + | chr3.2:58255695-58255714 | MS.gene049573:CDS | 45.0% |
| ! | TGGCTTGTGATCGCTTGTAA+GGG | - | chr3.2:58254612-58254631 | None:intergenic | 45.0% |
| !! | TTGGCTTGTGATCGCTTGTA+AGG | - | chr3.2:58254613-58254632 | None:intergenic | 45.0% |
| !!! | TGAGGGCAATGTGGTTTTGT+TGG | + | chr3.2:58254348-58254367 | MS.gene049573:CDS | 45.0% |
| GATCGCTTGTAAGGGTCAGA+GGG | - | chr3.2:58254604-58254623 | None:intergenic | 50.0% | |
| TGATCGCTTGTAAGGGTCAG+AGG | - | chr3.2:58254605-58254624 | None:intergenic | 50.0% | |
| ! | GTTTGCCACTTGGGCTTGAA+TGG | - | chr3.2:58255293-58255312 | None:intergenic | 50.0% |
| GGGTCAGAGGGCAAAAGAGA+AGG | - | chr3.2:58254592-58254611 | None:intergenic | 55.0% | |
| TTGGCCCAAGCCACAAGCTT+AGG | - | chr3.2:58255681-58255700 | None:intergenic | 55.0% | |
| ! | AGCTTGTGGCTTGGGCCAAA+AGG | + | chr3.2:58255682-58255701 | MS.gene049573:CDS | 55.0% |
| ! | GGCTTGGGCCAAAAGGTGTA+TGG | + | chr3.2:58255689-58255708 | MS.gene049573:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 58254343 | 58255800 | 58254343 | ID=MS.gene049573 |
| chr3.2 | mRNA | 58254343 | 58255800 | 58254343 | ID=MS.gene049573.t1;Parent=MS.gene049573 |
| chr3.2 | exon | 58254343 | 58254660 | 58254343 | ID=MS.gene049573.t1.exon1;Parent=MS.gene049573.t1 |
| chr3.2 | CDS | 58254343 | 58254660 | 58254343 | ID=cds.MS.gene049573.t1;Parent=MS.gene049573.t1 |
| chr3.2 | exon | 58255456 | 58255800 | 58255456 | ID=MS.gene049573.t1.exon2;Parent=MS.gene049573.t1 |
| chr3.2 | CDS | 58255456 | 58255800 | 58255456 | ID=cds.MS.gene049573.t1;Parent=MS.gene049573.t1 |
| Gene Sequence |
| Protein sequence |
