Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85609.t1 | XP_024632573.1 | 98.3 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.00E+00 | 1791.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85609.t1 | Q6C8F7 | 19.5 | 400 | 272 | 12 | 29 | 394 | 6 | 389 | 3.0e-06 | 55.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85609.t1 | A0A072VMX4 | 98.3 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.0e+00 | 1791.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene85609 | MS.gene54899 | PPI |
| MS.gene85609 | MS.gene68267 | PPI |
| MS.gene025598 | MS.gene85609 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85609.t1 | MTR_2g098850 | 98.314 | 949 | 16 | 0 | 1 | 949 | 1 | 949 | 0.0 | 1923 |
| MS.gene85609.t1 | MTR_2g098850 | 96.285 | 969 | 16 | 1 | 1 | 949 | 1 | 969 | 0.0 | 1910 |
| MS.gene85609.t1 | MTR_4g067110 | 70.213 | 987 | 242 | 5 | 1 | 949 | 1 | 973 | 0.0 | 1382 |
| MS.gene85609.t1 | MTR_7g091780 | 44.214 | 1011 | 475 | 16 | 2 | 949 | 6 | 990 | 0.0 | 801 |
| MS.gene85609.t1 | MTR_4g039320 | 55.598 | 518 | 212 | 2 | 1 | 518 | 1 | 500 | 0.0 | 624 |
| MS.gene85609.t1 | MTR_4g039320 | 38.369 | 417 | 228 | 10 | 554 | 949 | 620 | 1028 | 7.96e-62 | 228 |
| MS.gene85609.t1 | MTR_1g084090 | 33.784 | 1036 | 560 | 25 | 1 | 949 | 1 | 997 | 1.00e-177 | 542 |
| MS.gene85609.t1 | MTR_1g082810 | 52.273 | 88 | 42 | 0 | 50 | 137 | 12 | 99 | 8.72e-24 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85609.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene85609.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene85609.t1 | AT1G05960 | 55.075 | 995 | 388 | 13 | 1 | 949 | 1 | 982 | 0.0 | 1035 |
| MS.gene85609.t1 | AT1G05960 | 54.035 | 1016 | 387 | 14 | 1 | 949 | 1 | 1003 | 0.0 | 1023 |
| MS.gene85609.t1 | AT2G41830 | 52.941 | 527 | 231 | 3 | 2 | 518 | 6 | 525 | 0.0 | 604 |
| MS.gene85609.t1 | AT2G41830 | 38.499 | 413 | 232 | 7 | 551 | 949 | 621 | 1025 | 1.82e-66 | 242 |
| MS.gene85609.t1 | AT5G21080 | 55.058 | 514 | 217 | 3 | 1 | 507 | 1 | 507 | 0.0 | 592 |
| MS.gene85609.t1 | AT5G21080 | 40.000 | 365 | 172 | 14 | 542 | 883 | 624 | 964 | 2.65e-50 | 193 |
| MS.gene85609.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene85609.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene85609.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene85609.t1 | AT5G26850 | 35.010 | 1014 | 559 | 23 | 1 | 948 | 1 | 980 | 0.0 | 555 |
| MS.gene85609.t1 | AT2G41830 | 48.111 | 397 | 189 | 3 | 132 | 518 | 1 | 390 | 1.17e-125 | 402 |
| MS.gene85609.t1 | AT2G41830 | 38.499 | 413 | 232 | 7 | 551 | 949 | 486 | 890 | 5.01e-67 | 242 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGATCTCATTAAACATTTA+AGG | 0.108763 | 2.4:-5210912 | MS.gene85609:CDS |
| ATAGATTATATCAGCAATTT+TGG | 0.141544 | 2.4:-5211629 | MS.gene85609:intron |
| GTCTCTTGCTTTCTTCAATC+TGG | 0.151994 | 2.4:-5209608 | MS.gene85609:CDS |
| GTCAGGGATGCTTTGACTTT+TGG | 0.153104 | 2.4:+5208766 | None:intergenic |
| CGTTGCTTCCTTTGCCAATT+TGG | 0.154788 | 2.4:+5211304 | None:intergenic |
| AAATCAGACAAAATAGTTTA+TGG | 0.211784 | 2.4:-5208541 | MS.gene85609:CDS |
| ATTCAGCATGAAAGTCTTTC+TGG | 0.219781 | 2.4:-5209975 | MS.gene85609:CDS |
| GATACATGGGCTTCTTCTTT+AGG | 0.225126 | 2.4:+5211517 | None:intergenic |
| ATCAGGACCTCCATTGTTTA+TGG | 0.225767 | 2.4:-5207711 | MS.gene85609:CDS |
| GCTTTCTTCAATCTGGGTTC+AGG | 0.240475 | 2.4:-5209601 | MS.gene85609:CDS |
| AAGAAAATGCTAACCTTAAC+AGG | 0.270752 | 2.4:+5207090 | None:intergenic |
| CTTGTATAATATAGCCAAAT+TGG | 0.273376 | 2.4:-5211318 | MS.gene85609:CDS |
| TGTGCGAAGCCAAGGTTAAA+AGG | 0.278558 | 2.4:+5208833 | None:intergenic |
| TTCCCTCAGGAGCATATCTT+TGG | 0.279931 | 2.4:-5209115 | MS.gene85609:CDS |
| TCTATTATTTACTCGTTCTA+AGG | 0.280983 | 2.4:-5209517 | MS.gene85609:intron |
| TGAGCCAGTTGACATAGTTT+TGG | 0.281185 | 2.4:+5212431 | None:intergenic |
| ATGTATCCCAGTTACCTTCT+TGG | 0.288907 | 2.4:+5209091 | None:intergenic |
| CCTCGCACTGGTTCTTCATT+TGG | 0.289087 | 2.4:+5207223 | None:intergenic |
| CGGCTAAGAATCCTGCTTAT+TGG | 0.314950 | 2.4:-5211352 | MS.gene85609:CDS |
| TTGTTGTGATACAACACATT+AGG | 0.316010 | 2.4:+5210265 | None:intergenic |
| GCCGTCACTCTCTACCTTCT+TGG | 0.318765 | 2.4:+5210004 | None:intergenic |
| GCAGATGAAGTGCGGATCTT+AGG | 0.320739 | 2.4:-5212763 | MS.gene85609:CDS |
| CAACTTCTTGTAACGTTTAA+CGG | 0.322561 | 2.4:+5215588 | None:intergenic |
| TGAAATCTTACCCCGTAATA+AGG | 0.322697 | 2.4:-5215560 | MS.gene85609:intron |
| CCATCTTATGTTGTCCATAT+TGG | 0.323999 | 2.4:-5211061 | MS.gene85609:CDS |
| GCCATTGCCTCATAATTTGC+AGG | 0.331368 | 2.4:+5209558 | None:intergenic |
| GAATACCTGATTCAGCTAAA+AGG | 0.333943 | 2.4:+5211177 | None:intergenic |
| CTTTCTTCAATCTGGGTTCA+GGG | 0.338815 | 2.4:-5209600 | MS.gene85609:CDS |
| ATCCAAGTGCTTGACCAATA+TGG | 0.341542 | 2.4:+5211047 | None:intergenic |
| CAGGGAACATCTGCTGAAAA+TGG | 0.345392 | 2.4:-5209582 | MS.gene85609:CDS |
| TTCAGGATCTAAGATCTCTT+AGG | 0.350091 | 2.4:-5209650 | MS.gene85609:intron |
| TGGTTCTTCATTTGGTCATA+AGG | 0.353179 | 2.4:+5207231 | None:intergenic |
| CCTGACCGTGAAACACAAAT+TGG | 0.353295 | 2.4:-5210098 | MS.gene85609:CDS |
| TACATACATGTTCAACTTAG+AGG | 0.356074 | 2.4:-5212462 | MS.gene85609:CDS |
| ACTACAAACTCTATCTTCTA+TGG | 0.359318 | 2.4:-5212363 | MS.gene85609:intron |
| TTCTACCAGTTTCCCATTCA+AGG | 0.361845 | 2.4:+5209944 | None:intergenic |
| CAGTGCGAGGCCCTTGAAAC+AGG | 0.367467 | 2.4:-5207210 | MS.gene85609:CDS |
| CCAATTTGTGTTTCACGGTC+AGG | 0.367633 | 2.4:+5210098 | None:intergenic |
| AACCAACCGGTGCTTCTGTC+AGG | 0.368938 | 2.4:+5208749 | None:intergenic |
| TCTTACTAAAGCCATGTAAC+TGG | 0.377212 | 2.4:+5209155 | None:intergenic |
| ACCAACCGCCCAGATGTTCT+AGG | 0.381925 | 2.4:-5207471 | MS.gene85609:CDS |
| TCTCTTGCTTTCTTCAATCT+GGG | 0.383800 | 2.4:-5209607 | MS.gene85609:CDS |
| TGACTGGCTTCCACTTTGTT+CGG | 0.384685 | 2.4:+5207515 | None:intergenic |
| AGTTTCCCGTCAACCTGTTA+AGG | 0.390731 | 2.4:-5207103 | MS.gene85609:intron |
| ATCAGAGAAATCGGCTGCTC+TGG | 0.390835 | 2.4:+5208795 | None:intergenic |
| CATGAAATTATACCTTATTA+CGG | 0.393853 | 2.4:+5215548 | None:intergenic |
| ATGAAATTATACCTTATTAC+GGG | 0.396896 | 2.4:+5215549 | None:intergenic |
| AATTGATGAAACAACGCATC+AGG | 0.397806 | 2.4:+5210140 | None:intergenic |
| TGATTAACACCTAGAACATC+TGG | 0.398163 | 2.4:+5207462 | None:intergenic |
| AACTTCTTGTAACGTTTAAC+GGG | 0.399434 | 2.4:+5215589 | None:intergenic |
| GTCACTATCAGCTGTACAAT+TGG | 0.399637 | 2.4:-5208488 | MS.gene85609:CDS |
| AGCTTTCAAGAATTTATCAT+AGG | 0.401656 | 2.4:+5206738 | None:intergenic |
| TGTTGTGATACAACACATTA+GGG | 0.403427 | 2.4:+5210266 | None:intergenic |
| TTTCTCTACCTTGGCAAGGT+TGG | 0.405784 | 2.4:+5211579 | None:intergenic |
| AGATCCCTTGAATGGGAAAC+TGG | 0.413750 | 2.4:-5209949 | MS.gene85609:CDS |
| TTGTAATATGCACATTTCAA+TGG | 0.414364 | 2.4:+5210813 | None:intergenic |
| GTGCTCCAATTTGTGTTTCA+CGG | 0.415252 | 2.4:+5210093 | None:intergenic |
| GAACCACTGGTCTTCTGAAA+AGG | 0.418783 | 2.4:-5211234 | MS.gene85609:CDS |
| TGCCATCCGTGGTTTCTCCT+TGG | 0.421597 | 2.4:-5210046 | MS.gene85609:CDS |
| TCATCAATTGCTACTGGCCA+TGG | 0.423313 | 2.4:-5210126 | MS.gene85609:CDS |
| CAAGCCTCAGTTGCAGTCAT+TGG | 0.424672 | 2.4:-5210943 | MS.gene85609:CDS |
| CCTTCATCTATCAAATCATC+TGG | 0.433965 | 2.4:+5207546 | None:intergenic |
| TATCCCAAAACTATGTCAAC+TGG | 0.436399 | 2.4:-5212435 | MS.gene85609:CDS |
| TAGGAAATTCTTGAACCAAC+TGG | 0.437576 | 2.4:+5211536 | None:intergenic |
| CCAGATGATTTGATAGATGA+AGG | 0.440649 | 2.4:-5207546 | MS.gene85609:CDS |
| CTGTTTCAAGGGCCTCGCAC+TGG | 0.440870 | 2.4:+5207211 | None:intergenic |
| CCTGATGATGCTTATCCATC+AGG | 0.442006 | 2.4:-5207728 | MS.gene85609:CDS |
| TGGAATCAGATCAGAGAAAT+CGG | 0.443201 | 2.4:+5208786 | None:intergenic |
| TTGTATCAGGTTGGAGATGC+AGG | 0.443500 | 2.4:-5210400 | MS.gene85609:intron |
| AACCACTGGTCTTCTGAAAA+GGG | 0.445232 | 2.4:-5211233 | MS.gene85609:CDS |
| CTATTTGCCAGTAGTTTGCT+AGG | 0.446027 | 2.4:-5212817 | MS.gene85609:CDS |
| TCTGGAGCAGATCCCTTGAA+TGG | 0.446950 | 2.4:-5209957 | MS.gene85609:CDS |
| ACTTGAAAGAACTATGGCCT+TGG | 0.447402 | 2.4:+5207137 | None:intergenic |
| GATAAATTCTTGAAAGCTGC+AGG | 0.448096 | 2.4:-5206733 | MS.gene85609:CDS |
| TCCACAGACATCCAGTTACA+TGG | 0.449793 | 2.4:-5209166 | MS.gene85609:intron |
| TGGGAAACTGGTAGAAGAAA+AGG | 0.453205 | 2.4:-5209937 | MS.gene85609:intron |
| TCTAGGTGTTAATCAACTCT+TGG | 0.455100 | 2.4:-5207454 | MS.gene85609:CDS |
| TTCATTTGGTCATAAGGTAA+AGG | 0.457246 | 2.4:+5207237 | None:intergenic |
| GTAGTTTGCTAGGGATCATT+CGG | 0.460329 | 2.4:-5212807 | MS.gene85609:CDS |
| TGAATTCAGTTTCTCTACCT+TGG | 0.460514 | 2.4:+5211570 | None:intergenic |
| GAGCTCAATGATAGGAAAAT+CGG | 0.463220 | 2.4:-5214085 | MS.gene85609:CDS |
| AGAAAGACTTTCATGCTGAA+TGG | 0.464680 | 2.4:+5209977 | None:intergenic |
| CCTTAAATGTTTAATGAGAT+CGG | 0.465046 | 2.4:+5210912 | None:intergenic |
| GTCCATATTGGTCAAGCACT+TGG | 0.465263 | 2.4:-5211049 | MS.gene85609:CDS |
| TTCAAAAGGAGATTTGAAGT+TGG | 0.466183 | 2.4:-5206854 | MS.gene85609:CDS |
| TTTGGCCAGGTGAAGTTCAT+GGG | 0.467465 | 2.4:-5211959 | MS.gene85609:intron |
| TCATCCACCAATTCAAGAAA+AGG | 0.470757 | 2.4:+5208589 | None:intergenic |
| TTTAGTAAGATGCTTCCAAT+TGG | 0.474294 | 2.4:-5209142 | MS.gene85609:CDS |
| AACGACTGTGCGGCGTGTCT+TGG | 0.477917 | 2.4:-5211285 | MS.gene85609:CDS |
| CATTCAACATCGAAGATACA+TGG | 0.478977 | 2.4:+5211503 | None:intergenic |
| GTTGTTTCATCAATTGCTAC+TGG | 0.481617 | 2.4:-5210132 | MS.gene85609:CDS |
| CATATTACAACTTTCAATCA+AGG | 0.482382 | 2.4:-5210800 | MS.gene85609:intron |
| CTATGGCCTTGGTCTCCTGC+TGG | 0.483473 | 2.4:+5207148 | None:intergenic |
| TGTTAATCAACTCTTGGAAT+CGG | 0.484775 | 2.4:-5207448 | MS.gene85609:intron |
| CCAATATGGACAACATAAGA+TGG | 0.486702 | 2.4:+5211061 | None:intergenic |
| AGGTAAAGGAGTTGAGGAAG+TGG | 0.490305 | 2.4:+5207251 | None:intergenic |
| CTGGAGCAGATCCCTTGAAT+GGG | 0.491735 | 2.4:-5209956 | MS.gene85609:CDS |
| AATCTGAAGGATAGGTTGCT+TGG | 0.496345 | 2.4:+5211011 | None:intergenic |
| GAATCCTGCTTATTGGTCAA+AGG | 0.497986 | 2.4:-5211345 | MS.gene85609:CDS |
| GTCATAAGGTAAAGGAGTTG+AGG | 0.498611 | 2.4:+5207245 | None:intergenic |
| TTATACAAACAGCCCGCAGC+AGG | 0.499960 | 2.4:+5208563 | None:intergenic |
| CCTGATGGATAAGCATCATC+AGG | 0.500725 | 2.4:+5207728 | None:intergenic |
| GCTTTCAAGAATTTATCATA+GGG | 0.501037 | 2.4:+5206739 | None:intergenic |
| TTGTCAGATTACAGAGAACT+TGG | 0.504334 | 2.4:-5213471 | MS.gene85609:intron |
| TCAGCTGAAGCAACCGACAT+TGG | 0.505319 | 2.4:-5210874 | MS.gene85609:CDS |
| ATCTGAGCAAGTGGAGAACC+TGG | 0.507631 | 2.4:+5207677 | None:intergenic |
| AAATGGCCCTGCAAATTATG+AGG | 0.509961 | 2.4:-5209565 | MS.gene85609:CDS |
| TCGATGTTGAATGTTGCGAC+AGG | 0.513988 | 2.4:-5211493 | MS.gene85609:CDS |
| GTGCGAAGCCAAGGTTAAAA+GGG | 0.514025 | 2.4:+5208834 | None:intergenic |
| TAGTGTCTTGTGAACGGAAG+CGG | 0.514599 | 2.4:+5206797 | None:intergenic |
| AGGTTGCTGAGCTCAATGAT+AGG | 0.515256 | 2.4:-5214093 | MS.gene85609:CDS |
| AAAATTGCTGTCGTCATGTA+GGG | 0.517807 | 2.4:-5213378 | MS.gene85609:CDS |
| ACATACATGTTCAACTTAGA+GGG | 0.518274 | 2.4:-5212461 | MS.gene85609:CDS |
| GAAAATTGCTGTCGTCATGT+AGG | 0.518574 | 2.4:-5213379 | MS.gene85609:CDS |
| GCAAGTGGAGAACCTGGCCT+TGG | 0.519764 | 2.4:+5207683 | None:intergenic |
| TCTACCAGTTTCCCATTCAA+GGG | 0.520413 | 2.4:+5209945 | None:intergenic |
| TCCTGAGGGAAAATGCCAAT+TGG | 0.521190 | 2.4:+5209127 | None:intergenic |
| TGCTAACCTTAACAGGTTGA+CGG | 0.526104 | 2.4:+5207097 | None:intergenic |
| TTGTCTTGATCTTGCACGCA+AGG | 0.526405 | 2.4:+5215612 | None:intergenic |
| ATAATATCAATCTGAAGGAT+AGG | 0.527266 | 2.4:+5211003 | None:intergenic |
| CAAACCTTTGACCAATAAGC+AGG | 0.528978 | 2.4:+5211341 | None:intergenic |
| AATGATCCCTAGCAAACTAC+TGG | 0.529789 | 2.4:+5212810 | None:intergenic |
| CTTGATCTTGCACGCAAGGA+AGG | 0.532038 | 2.4:+5215616 | None:intergenic |
| CCCTGCAAATTATGAGGCAA+TGG | 0.533075 | 2.4:-5209559 | MS.gene85609:CDS |
| CAGGCACTAGAATATTCAAA+AGG | 0.535759 | 2.4:-5206868 | MS.gene85609:CDS |
| TCATCACTTTCACAGGGATA+CGG | 0.536957 | 2.4:-5211372 | MS.gene85609:intron |
| ACCTAGAACATCTGGGCGGT+TGG | 0.539791 | 2.4:+5207470 | None:intergenic |
| GCAGGCGGGAACAACCCGCC+TGG | 0.541194 | 2.4:+5215660 | None:intergenic |
| GCTCTGCTTCTACGTTCAGC+TGG | 0.545387 | 2.4:-5212386 | MS.gene85609:CDS |
| GATTTGATAGATGAAGGGAG+TGG | 0.545902 | 2.4:-5207540 | MS.gene85609:CDS |
| GATCTGCGTAATGAAAGCTT+TGG | 0.548201 | 2.4:-5213431 | MS.gene85609:CDS |
| ATAAACAATGGAGGTCCTGA+TGG | 0.548590 | 2.4:+5207713 | None:intergenic |
| TATAAGCATGTGCGAAGCCA+AGG | 0.550236 | 2.4:+5208825 | None:intergenic |
| CTTGGAGCAAAGATGTTACA+AGG | 0.550383 | 2.4:-5213453 | MS.gene85609:CDS |
| TTTATGGAGACACCAAGGCC+AGG | 0.551245 | 2.4:-5207695 | MS.gene85609:CDS |
| GCTAACCTTAACAGGTTGAC+GGG | 0.552218 | 2.4:+5207098 | None:intergenic |
| ACTCACTTTGTCAAAATCCA+TGG | 0.552219 | 2.4:+5211919 | None:intergenic |
| TCAGTTTCTCTACCTTGGCA+AGG | 0.555085 | 2.4:+5211575 | None:intergenic |
| AGCAAACTACTGGCAAATAG+TGG | 0.556008 | 2.4:+5212820 | None:intergenic |
| TGCACCAATGACTGCAACTG+AGG | 0.559030 | 2.4:+5210939 | None:intergenic |
| CTGGTTCTTAAAACTGCGAA+TGG | 0.560241 | 2.4:+5207167 | None:intergenic |
| AGCATCCCTGACAGAAGCAC+CGG | 0.563834 | 2.4:-5208755 | MS.gene85609:intron |
| ATGTCAACTGGCTCAAGAAG+TGG | 0.563947 | 2.4:-5212423 | MS.gene85609:CDS |
| TATTTGCCAGTAGTTTGCTA+GGG | 0.566348 | 2.4:-5212816 | MS.gene85609:CDS |
| AATACAGAGGTTACCGCAGG+CGG | 0.566552 | 2.4:+5215645 | None:intergenic |
| ATTTGATAGATGAAGGGAGT+GGG | 0.568185 | 2.4:-5207539 | MS.gene85609:CDS |
| CCATTGCCTCATAATTTGCA+GGG | 0.571980 | 2.4:+5209559 | None:intergenic |
| GGTGGATGATAACCTGCTGC+GGG | 0.572873 | 2.4:-5208575 | MS.gene85609:CDS |
| GACTTTCATGCTGAATGGAA+AGG | 0.573928 | 2.4:+5209982 | None:intergenic |
| CAAAATAGTTTATGGATCTG+TGG | 0.575711 | 2.4:-5208533 | MS.gene85609:CDS |
| GAGGCTTACCACCATCTCGC+AGG | 0.575916 | 2.4:-5208861 | MS.gene85609:CDS |
| ACCAACCGGTGCTTCTGTCA+GGG | 0.578305 | 2.4:+5208750 | None:intergenic |
| GCTTCCTAGTGTCTTGTGAA+CGG | 0.579072 | 2.4:+5206791 | None:intergenic |
| TGTTAATAATATCAATCTGA+AGG | 0.579561 | 2.4:+5210998 | None:intergenic |
| AGGGACCTCCTGCGAGATGG+TGG | 0.582709 | 2.4:+5208853 | None:intergenic |
| TTATCATAGGGGCTCGAAGG+TGG | 0.586508 | 2.4:+5206751 | None:intergenic |
| CAGATGATTTGATAGATGAA+GGG | 0.588326 | 2.4:-5207545 | MS.gene85609:CDS |
| AAAAGGGACCTCCTGCGAGA+TGG | 0.588416 | 2.4:+5208850 | None:intergenic |
| AATTTATCATAGGGGCTCGA+AGG | 0.589435 | 2.4:+5206748 | None:intergenic |
| AGCATATCTTTGGACCAAGA+AGG | 0.591122 | 2.4:-5209105 | MS.gene85609:intron |
| AGGCGGGTTGTTCCCGCCTG+CGG | 0.592808 | 2.4:-5215658 | MS.gene85609:CDS |
| TGTCAACTGGCTCAAGAAGT+GGG | 0.598481 | 2.4:-5212422 | MS.gene85609:CDS |
| TTGAACTAAAAGTAGACAGA+TGG | 0.600239 | 2.4:-5212485 | MS.gene85609:intron |
| ACCACTGGTCTTCTGAAAAG+GGG | 0.600634 | 2.4:-5211232 | MS.gene85609:CDS |
| TAATATAGCCAAATTGGCAA+AGG | 0.601822 | 2.4:-5211312 | MS.gene85609:CDS |
| GGGAACTCTATCTGAGCAAG+TGG | 0.603721 | 2.4:+5207668 | None:intergenic |
| CAATATGGACAACATAAGAT+GGG | 0.604028 | 2.4:+5211062 | None:intergenic |
| ATCTAAATCCAACCTTGCCA+AGG | 0.605271 | 2.4:-5211587 | MS.gene85609:CDS |
| ATACAGAGGTTACCGCAGGC+GGG | 0.606778 | 2.4:+5215646 | None:intergenic |
| TGGTGGATGATAACCTGCTG+CGG | 0.607006 | 2.4:-5208576 | MS.gene85609:CDS |
| TTCACAATCTCAGAACCAGT+TGG | 0.609615 | 2.4:-5211551 | MS.gene85609:CDS |
| TGAGCACTCACATCTATCCA+TGG | 0.610011 | 2.4:-5211936 | MS.gene85609:CDS |
| ATTGATGAAACAACGCATCA+GGG | 0.611434 | 2.4:+5210141 | None:intergenic |
| ATACGCATCATTTCCAATGT+CGG | 0.614408 | 2.4:+5210861 | None:intergenic |
| TAAGAACCAGCAGGAGACCA+AGG | 0.614641 | 2.4:-5207154 | MS.gene85609:CDS |
| TATGGTGCTCATGCCATCCG+TGG | 0.616911 | 2.4:-5210057 | MS.gene85609:CDS |
| GTCCAAAGATATGCTCCTGA+GGG | 0.617155 | 2.4:+5209113 | None:intergenic |
| CTTTCAAGAATTTATCATAG+GGG | 0.618755 | 2.4:+5206740 | None:intergenic |
| AGAGTTCCCTGATGTTGATG+AGG | 0.623066 | 2.4:-5207654 | MS.gene85609:intron |
| GGTCCAAAGATATGCTCCTG+AGG | 0.625750 | 2.4:+5209112 | None:intergenic |
| GAATCCACTGAGAATTCCCA+AGG | 0.626646 | 2.4:-5214038 | MS.gene85609:intron |
| TCCAAGAAGGTAGAGAGTGA+CGG | 0.634799 | 2.4:-5210005 | MS.gene85609:CDS |
| TATTATTAACATCACCACAC+AGG | 0.636418 | 2.4:-5210986 | MS.gene85609:CDS |
| CCACTGGTCTTCTGAAAAGG+GGG | 0.638125 | 2.4:-5211231 | MS.gene85609:CDS |
| AAGAAAGCAAGAGACTCACT+TGG | 0.642476 | 2.4:+5209616 | None:intergenic |
| TTCACGGTCAGGATGAGCCA+TGG | 0.645077 | 2.4:+5210109 | None:intergenic |
| GCTTCCGTTCACAAGACACT+AGG | 0.647855 | 2.4:-5206795 | MS.gene85609:CDS |
| CTTGGTGTCTCCATAAACAA+TGG | 0.651412 | 2.4:+5207701 | None:intergenic |
| ATTCAACATCGAAGATACAT+GGG | 0.652123 | 2.4:+5211504 | None:intergenic |
| ATTACCTTGGGAATTCTCAG+TGG | 0.654249 | 2.4:+5214034 | None:intergenic |
| GATTAACACCTAGAACATCT+GGG | 0.656514 | 2.4:+5207463 | None:intergenic |
| GTGATGTTCTACGATCTGAC+TGG | 0.658238 | 2.4:+5207499 | None:intergenic |
| GCTTACCACCATCTCGCAGG+AGG | 0.664540 | 2.4:-5208858 | MS.gene85609:CDS |
| GGGAGTGGGACCGAACAAAG+TGG | 0.665867 | 2.4:-5207525 | MS.gene85609:CDS |
| CAAAGGAAGCAACGACTGTG+CGG | 0.665878 | 2.4:-5211295 | MS.gene85609:CDS |
| AACCAAGGAGAAACCACGGA+TGG | 0.669181 | 2.4:+5210044 | None:intergenic |
| TAATGTGTTGTATCACAACA+AGG | 0.672528 | 2.4:-5210263 | MS.gene85609:intron |
| GTCTAACCAAGGAGAAACCA+CGG | 0.677544 | 2.4:+5210040 | None:intergenic |
| AAACACGAGCAGATGAAGTG+CGG | 0.678176 | 2.4:-5212771 | MS.gene85609:CDS |
| GGTGTCTCCATAAACAATGG+AGG | 0.682652 | 2.4:+5207704 | None:intergenic |
| CATTGTTTATGGAGACACCA+AGG | 0.696387 | 2.4:-5207700 | MS.gene85609:CDS |
| CCAAATGAAGAACCAGTGCG+AGG | 0.703756 | 2.4:-5207223 | MS.gene85609:CDS |
| TGAAATTATACCTTATTACG+GGG | 0.709279 | 2.4:+5215550 | None:intergenic |
| TAACACCTAGAACATCTGGG+CGG | 0.824221 | 2.4:+5207466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5206726 | 5215695 | 5206726 | ID=MS.gene85609 |
| chr2.4 | mRNA | 5206726 | 5215695 | 5206726 | ID=MS.gene85609.t1;Parent=MS.gene85609 |
| chr2.4 | exon | 5215561 | 5215695 | 5215561 | ID=MS.gene85609.t1.exon1;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5215561 | 5215695 | 5215561 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5214039 | 5214113 | 5214039 | ID=MS.gene85609.t1.exon2;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5214039 | 5214113 | 5214039 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5213371 | 5213486 | 5213371 | ID=MS.gene85609.t1.exon3;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5213371 | 5213486 | 5213371 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5212729 | 5212843 | 5212729 | ID=MS.gene85609.t1.exon4;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5212729 | 5212843 | 5212729 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5212364 | 5212492 | 5212364 | ID=MS.gene85609.t1.exon5;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5212364 | 5212492 | 5212364 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5211925 | 5211972 | 5211925 | ID=MS.gene85609.t1.exon6;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5211925 | 5211972 | 5211925 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5211472 | 5211647 | 5211472 | ID=MS.gene85609.t1.exon7;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5211472 | 5211647 | 5211472 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5211183 | 5211379 | 5211183 | ID=MS.gene85609.t1.exon8;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5211183 | 5211379 | 5211183 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5210801 | 5211093 | 5210801 | ID=MS.gene85609.t1.exon9;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5210801 | 5211093 | 5210801 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5210264 | 5210413 | 5210264 | ID=MS.gene85609.t1.exon10;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5210264 | 5210413 | 5210264 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5209938 | 5210168 | 5209938 | ID=MS.gene85609.t1.exon11;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5209938 | 5210168 | 5209938 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5209518 | 5209667 | 5209518 | ID=MS.gene85609.t1.exon12;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5209518 | 5209667 | 5209518 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5209106 | 5209181 | 5209106 | ID=MS.gene85609.t1.exon13;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5209106 | 5209181 | 5209106 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5208756 | 5208883 | 5208756 | ID=MS.gene85609.t1.exon14;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5208756 | 5208883 | 5208756 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5208423 | 5208617 | 5208423 | ID=MS.gene85609.t1.exon15;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5208423 | 5208617 | 5208423 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5207655 | 5207795 | 5207655 | ID=MS.gene85609.t1.exon16;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5207655 | 5207795 | 5207655 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5207449 | 5207577 | 5207449 | ID=MS.gene85609.t1.exon17;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5207449 | 5207577 | 5207449 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5207104 | 5207307 | 5207104 | ID=MS.gene85609.t1.exon18;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5207104 | 5207307 | 5207104 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| chr2.4 | exon | 5206726 | 5206887 | 5206726 | ID=MS.gene85609.t1.exon19;Parent=MS.gene85609.t1 |
| chr2.4 | CDS | 5206726 | 5206887 | 5206726 | ID=cds.MS.gene85609.t1;Parent=MS.gene85609.t1 |
| Gene Sequence |
| Protein sequence |
