Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86112.t1 | XP_003618663.1 | 91.3 | 173 | 15 | 0 | 1 | 173 | 1 | 173 | 2.10E-87 | 331.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86112.t1 | F8WKW1 | 57.4 | 169 | 67 | 2 | 5 | 173 | 9 | 172 | 5.8e-49 | 195.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86112.t1 | G7KM84 | 91.3 | 173 | 15 | 0 | 1 | 173 | 1 | 173 | 1.5e-87 | 331.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051525 | MS.gene86112 | 0.827167 | 1.82E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene86112 | -0.823938 | 1.06E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene86112 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene86112 | 0.813077 | 3.07E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene86112 | 0.822589 | 2.18E-53 | -1.69E-46 |
| MS.gene055217 | MS.gene86112 | 0.822421 | 2.39E-53 | -1.69E-46 |
| MS.gene05553 | MS.gene86112 | 0.841357 | 4.99E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene86112 | 0.803942 | 2.74E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene86112 | 0.814854 | 1.25E-51 | -1.69E-46 |
| MS.gene059420 | MS.gene86112 | 0.80162 | 8.26E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene86112 | -0.805793 | 1.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86112.t1 | MTR_6g014270 | 91.329 | 173 | 15 | 0 | 1 | 173 | 1 | 173 | 3.34e-115 | 335 |
| MS.gene86112.t1 | MTR_6g014195 | 81.977 | 172 | 29 | 1 | 2 | 173 | 5 | 174 | 1.61e-100 | 288 |
| MS.gene86112.t1 | MTR_6g014186 | 79.191 | 173 | 34 | 1 | 1 | 173 | 1 | 171 | 9.79e-97 | 287 |
| MS.gene86112.t1 | MTR_6g014150 | 80.347 | 173 | 32 | 1 | 1 | 173 | 1 | 171 | 2.07e-90 | 272 |
| MS.gene86112.t1 | MTR_6g014200 | 79.769 | 173 | 33 | 1 | 1 | 173 | 1 | 171 | 6.81e-89 | 268 |
| MS.gene86112.t1 | MTR_0288s0020 | 69.006 | 171 | 52 | 1 | 3 | 173 | 6 | 175 | 6.78e-82 | 249 |
| MS.gene86112.t1 | MTR_6g013440 | 67.442 | 172 | 54 | 1 | 2 | 173 | 6 | 175 | 1.83e-80 | 246 |
| MS.gene86112.t1 | MTR_6g014300 | 69.186 | 172 | 51 | 1 | 2 | 173 | 7 | 176 | 2.43e-80 | 246 |
| MS.gene86112.t1 | MTR_6g014040 | 66.272 | 169 | 56 | 1 | 5 | 173 | 8 | 175 | 6.29e-79 | 243 |
| MS.gene86112.t1 | MTR_6g014020 | 65.680 | 169 | 56 | 1 | 5 | 173 | 8 | 174 | 3.56e-77 | 238 |
| MS.gene86112.t1 | MTR_3g008010 | 64.327 | 171 | 56 | 2 | 3 | 173 | 6 | 171 | 9.98e-75 | 232 |
| MS.gene86112.t1 | MTR_6g014290 | 62.573 | 171 | 59 | 2 | 3 | 173 | 6 | 171 | 3.82e-73 | 228 |
| MS.gene86112.t1 | MTR_7g011470 | 66.474 | 173 | 56 | 1 | 3 | 175 | 6 | 176 | 4.01e-73 | 227 |
| MS.gene86112.t1 | MTR_8g059425 | 63.743 | 171 | 58 | 2 | 3 | 173 | 6 | 172 | 4.38e-73 | 228 |
| MS.gene86112.t1 | MTR_6g013450 | 63.905 | 169 | 59 | 1 | 5 | 173 | 8 | 174 | 6.39e-73 | 227 |
| MS.gene86112.t1 | MTR_6g014310 | 68.639 | 169 | 51 | 1 | 5 | 173 | 9 | 175 | 7.92e-73 | 227 |
| MS.gene86112.t1 | MTR_6g014240 | 66.474 | 173 | 42 | 2 | 1 | 173 | 1 | 157 | 8.95e-73 | 226 |
| MS.gene86112.t1 | MTR_7g011470 | 66.667 | 171 | 55 | 1 | 3 | 173 | 6 | 174 | 6.24e-72 | 224 |
| MS.gene86112.t1 | MTR_6g011340 | 66.272 | 169 | 55 | 1 | 5 | 173 | 8 | 174 | 1.50e-71 | 223 |
| MS.gene86112.t1 | MTR_6g013990 | 66.667 | 171 | 55 | 1 | 3 | 173 | 6 | 174 | 4.81e-71 | 222 |
| MS.gene86112.t1 | MTR_6g013960 | 61.404 | 171 | 64 | 1 | 3 | 173 | 6 | 174 | 7.60e-71 | 222 |
| MS.gene86112.t1 | MTR_6g014170 | 64.912 | 171 | 55 | 2 | 3 | 173 | 6 | 171 | 8.49e-71 | 221 |
| MS.gene86112.t1 | MTR_6g014220 | 64.912 | 171 | 55 | 2 | 3 | 173 | 6 | 171 | 5.42e-70 | 219 |
| MS.gene86112.t1 | MTR_6g014187 | 62.573 | 171 | 62 | 1 | 3 | 173 | 6 | 174 | 6.81e-70 | 219 |
| MS.gene86112.t1 | MTR_6g014250 | 60.234 | 171 | 63 | 2 | 3 | 173 | 6 | 171 | 2.35e-69 | 218 |
| MS.gene86112.t1 | MTR_0199s0010 | 59.064 | 171 | 64 | 3 | 3 | 173 | 6 | 170 | 1.15e-68 | 210 |
| MS.gene86112.t1 | MTR_8g007585 | 59.064 | 171 | 64 | 3 | 3 | 173 | 6 | 170 | 9.93e-68 | 211 |
| MS.gene86112.t1 | MTR_0475s0020 | 76.000 | 125 | 29 | 1 | 3 | 127 | 6 | 129 | 1.39e-65 | 199 |
| MS.gene86112.t1 | MTR_6g014050 | 68.047 | 169 | 52 | 1 | 5 | 173 | 9 | 175 | 2.17e-65 | 207 |
| MS.gene86112.t1 | MTR_6g013920 | 61.765 | 170 | 62 | 1 | 4 | 173 | 7 | 173 | 3.59e-61 | 197 |
| MS.gene86112.t1 | MTR_5g058320 | 58.580 | 169 | 52 | 2 | 5 | 173 | 8 | 158 | 2.26e-60 | 194 |
| MS.gene86112.t1 | MTR_6g013900 | 58.824 | 170 | 67 | 1 | 4 | 173 | 7 | 173 | 9.55e-59 | 190 |
| MS.gene86112.t1 | MTR_5g464760 | 52.907 | 172 | 73 | 3 | 3 | 173 | 8 | 172 | 4.35e-57 | 186 |
| MS.gene86112.t1 | MTR_5g464810 | 52.976 | 168 | 71 | 3 | 7 | 173 | 12 | 172 | 7.45e-56 | 183 |
| MS.gene86112.t1 | MTR_5g064240 | 52.976 | 168 | 71 | 3 | 7 | 173 | 12 | 172 | 7.45e-56 | 183 |
| MS.gene86112.t1 | MTR_2g008210 | 52.941 | 170 | 70 | 2 | 4 | 173 | 8 | 167 | 6.63e-55 | 180 |
| MS.gene86112.t1 | MTR_0036s0220 | 50.888 | 169 | 75 | 3 | 6 | 173 | 11 | 172 | 7.08e-54 | 177 |
| MS.gene86112.t1 | MTR_3g479620 | 48.555 | 173 | 82 | 2 | 3 | 175 | 2 | 167 | 1.47e-53 | 168 |
| MS.gene86112.t1 | MTR_3g479520 | 47.368 | 171 | 83 | 2 | 4 | 174 | 12 | 175 | 1.09e-48 | 164 |
| MS.gene86112.t1 | MTR_3g479490 | 48.538 | 171 | 81 | 2 | 3 | 173 | 2 | 165 | 1.20e-47 | 161 |
| MS.gene86112.t1 | MTR_6g013680 | 61.475 | 122 | 45 | 1 | 52 | 173 | 2 | 121 | 1.82e-47 | 159 |
| MS.gene86112.t1 | MTR_3g079480 | 46.471 | 170 | 84 | 2 | 4 | 173 | 18 | 180 | 4.21e-46 | 157 |
| MS.gene86112.t1 | MTR_4g094220 | 41.618 | 173 | 96 | 2 | 1 | 173 | 1 | 168 | 5.95e-38 | 135 |
| MS.gene86112.t1 | MTR_3g479470 | 41.765 | 170 | 92 | 2 | 4 | 173 | 10 | 172 | 1.12e-37 | 135 |
| MS.gene86112.t1 | MTR_6g014160 | 45.029 | 171 | 74 | 3 | 3 | 173 | 6 | 156 | 1.14e-37 | 133 |
| MS.gene86112.t1 | MTR_8g043470 | 57.265 | 117 | 30 | 2 | 56 | 172 | 9 | 105 | 5.10e-36 | 129 |
| MS.gene86112.t1 | MTR_7g013260 | 28.994 | 169 | 106 | 4 | 6 | 174 | 5 | 159 | 5.08e-18 | 80.9 |
| MS.gene86112.t1 | MTR_6g038240 | 30.323 | 155 | 93 | 3 | 6 | 160 | 10 | 149 | 1.47e-16 | 76.6 |
| MS.gene86112.t1 | MTR_7g013220 | 29.944 | 177 | 108 | 5 | 6 | 175 | 4 | 171 | 2.03e-16 | 76.3 |
| MS.gene86112.t1 | MTR_7g013240 | 28.994 | 169 | 106 | 4 | 6 | 174 | 5 | 159 | 2.22e-16 | 75.9 |
| MS.gene86112.t1 | MTR_7g013200 | 29.412 | 170 | 107 | 3 | 6 | 175 | 4 | 160 | 6.02e-16 | 74.7 |
| MS.gene86112.t1 | MTR_3g069710 | 31.928 | 166 | 93 | 5 | 9 | 173 | 14 | 160 | 1.94e-15 | 73.2 |
| MS.gene86112.t1 | MTR_4g064987 | 29.310 | 174 | 106 | 5 | 2 | 173 | 3 | 161 | 3.33e-15 | 72.8 |
| MS.gene86112.t1 | MTR_5g031860 | 26.374 | 182 | 102 | 4 | 4 | 174 | 9 | 169 | 5.46e-15 | 72.0 |
| MS.gene86112.t1 | MTR_5g031840 | 28.736 | 174 | 105 | 5 | 6 | 174 | 4 | 163 | 5.63e-15 | 72.0 |
| MS.gene86112.t1 | MTR_5g031830 | 25.275 | 182 | 104 | 4 | 4 | 174 | 9 | 169 | 3.66e-14 | 69.7 |
| MS.gene86112.t1 | MTR_7g013180 | 23.952 | 167 | 116 | 3 | 6 | 170 | 4 | 161 | 5.44e-14 | 69.3 |
| MS.gene86112.t1 | MTR_3g069690 | 29.932 | 147 | 84 | 4 | 9 | 155 | 10 | 137 | 9.82e-14 | 68.6 |
| MS.gene86112.t1 | MTR_7g106850 | 70.270 | 37 | 10 | 1 | 12 | 47 | 144 | 180 | 7.02e-13 | 63.9 |
| MS.gene86112.t1 | MTR_4g064987 | 29.012 | 162 | 97 | 6 | 2 | 161 | 3 | 148 | 1.33e-12 | 65.1 |
| MS.gene86112.t1 | MTR_5g072860 | 31.176 | 170 | 99 | 6 | 7 | 174 | 18 | 171 | 2.79e-12 | 64.3 |
| MS.gene86112.t1 | MTR_7g080935 | 31.757 | 148 | 84 | 5 | 4 | 151 | 8 | 138 | 1.10e-11 | 62.4 |
| MS.gene86112.t1 | MTR_6g038300 | 26.846 | 149 | 93 | 4 | 6 | 154 | 10 | 142 | 1.40e-11 | 62.4 |
| MS.gene86112.t1 | MTR_5g035580 | 28.205 | 156 | 91 | 6 | 7 | 160 | 13 | 149 | 2.01e-11 | 61.6 |
| MS.gene86112.t1 | MTR_5g004940 | 26.220 | 164 | 102 | 4 | 2 | 160 | 12 | 161 | 4.61e-11 | 60.5 |
| MS.gene86112.t1 | MTR_0477s0010 | 57.778 | 45 | 19 | 0 | 130 | 174 | 1 | 45 | 4.69e-11 | 60.5 |
| MS.gene86112.t1 | MTR_1g107315 | 28.070 | 171 | 106 | 6 | 2 | 165 | 3 | 163 | 7.26e-11 | 60.1 |
| MS.gene86112.t1 | MTR_5g098960 | 25.143 | 175 | 117 | 3 | 1 | 175 | 1 | 161 | 8.15e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86112.t1 | AT1G22400 | 52.326 | 172 | 75 | 2 | 2 | 173 | 8 | 172 | 3.74e-59 | 192 |
| MS.gene86112.t1 | AT1G22370 | 52.941 | 170 | 73 | 2 | 4 | 173 | 10 | 172 | 7.35e-59 | 191 |
| MS.gene86112.t1 | AT1G22340 | 51.744 | 172 | 76 | 2 | 2 | 173 | 8 | 172 | 9.42e-58 | 188 |
| MS.gene86112.t1 | AT1G22380 | 51.744 | 172 | 76 | 2 | 2 | 173 | 8 | 172 | 2.42e-57 | 187 |
| MS.gene86112.t1 | AT1G78270 | 52.907 | 172 | 74 | 2 | 2 | 173 | 8 | 172 | 9.84e-57 | 185 |
| MS.gene86112.t1 | AT1G22360 | 52.353 | 170 | 74 | 2 | 4 | 173 | 7 | 169 | 1.60e-56 | 184 |
| MS.gene86112.t1 | AT1G22360 | 52.353 | 170 | 74 | 2 | 4 | 173 | 7 | 169 | 1.65e-56 | 184 |
| MS.gene86112.t1 | AT3G02100 | 34.483 | 174 | 101 | 6 | 5 | 174 | 11 | 175 | 2.84e-24 | 98.6 |
| MS.gene86112.t1 | AT3G46660 | 34.545 | 165 | 86 | 6 | 4 | 167 | 11 | 154 | 3.66e-20 | 87.0 |
| MS.gene86112.t1 | AT5G38010 | 34.104 | 173 | 100 | 4 | 2 | 173 | 5 | 164 | 2.10e-19 | 84.7 |
| MS.gene86112.t1 | AT3G46670 | 32.738 | 168 | 89 | 6 | 3 | 167 | 2 | 148 | 4.30e-18 | 80.9 |
| MS.gene86112.t1 | AT5G05890 | 34.302 | 172 | 92 | 5 | 7 | 173 | 8 | 163 | 6.16e-18 | 80.5 |
| MS.gene86112.t1 | AT5G05900 | 32.941 | 170 | 97 | 4 | 7 | 173 | 8 | 163 | 1.72e-17 | 79.3 |
| MS.gene86112.t1 | AT5G05860 | 34.524 | 168 | 89 | 7 | 7 | 172 | 9 | 157 | 3.57e-17 | 78.2 |
| MS.gene86112.t1 | AT3G11340 | 29.310 | 174 | 99 | 6 | 2 | 173 | 4 | 155 | 5.16e-16 | 75.1 |
| MS.gene86112.t1 | AT5G05880 | 32.335 | 167 | 98 | 4 | 7 | 173 | 8 | 159 | 9.18e-16 | 74.3 |
| MS.gene86112.t1 | AT3G46650 | 30.065 | 153 | 91 | 3 | 3 | 155 | 6 | 142 | 2.23e-14 | 70.5 |
| MS.gene86112.t1 | AT5G59580 | 31.126 | 151 | 87 | 4 | 5 | 155 | 7 | 140 | 2.26e-14 | 70.5 |
| MS.gene86112.t1 | AT3G21560 | 32.051 | 156 | 87 | 5 | 6 | 153 | 11 | 155 | 4.41e-14 | 69.7 |
| MS.gene86112.t1 | AT5G05870 | 33.728 | 169 | 94 | 7 | 7 | 172 | 8 | 161 | 5.64e-14 | 69.3 |
| MS.gene86112.t1 | AT2G36970 | 29.651 | 172 | 104 | 4 | 5 | 168 | 8 | 170 | 7.82e-14 | 68.9 |
| MS.gene86112.t1 | AT3G55700 | 28.902 | 173 | 96 | 6 | 9 | 173 | 10 | 163 | 2.03e-13 | 67.8 |
| MS.gene86112.t1 | AT5G59590 | 32.653 | 147 | 83 | 5 | 9 | 155 | 12 | 142 | 2.20e-13 | 67.4 |
| MS.gene86112.t1 | AT5G38040 | 30.952 | 168 | 82 | 6 | 15 | 173 | 18 | 160 | 2.33e-13 | 67.4 |
| MS.gene86112.t1 | AT3G46690 | 29.054 | 148 | 89 | 4 | 5 | 152 | 7 | 138 | 7.57e-12 | 63.2 |
| MS.gene86112.t1 | AT3G46720 | 29.139 | 151 | 90 | 3 | 2 | 152 | 4 | 137 | 1.38e-11 | 62.4 |
| MS.gene86112.t1 | AT2G30140 | 31.333 | 150 | 79 | 6 | 2 | 145 | 4 | 135 | 2.81e-11 | 61.2 |
| MS.gene86112.t1 | AT2G30140 | 31.333 | 150 | 79 | 6 | 2 | 145 | 4 | 135 | 2.98e-11 | 61.2 |
| MS.gene86112.t1 | AT4G15500 | 28.402 | 169 | 105 | 6 | 1 | 165 | 3 | 159 | 3.55e-11 | 61.2 |
| MS.gene86112.t1 | AT2G30150 | 31.250 | 160 | 83 | 6 | 1 | 152 | 1 | 141 | 6.98e-11 | 60.1 |
Find 32 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCCAATGCATGTACATTT+TGG | 0.203508 | 6.3:+8954657 | MS.gene86112:CDS |
| TTACTTACAATGTTTGATAA+AGG | 0.314567 | 6.3:+8954692 | MS.gene86112:CDS |
| GTTTGATTAATGGATTGATA+TGG | 0.325659 | 6.3:-8954262 | None:intergenic |
| ATATGGCCTTGAACTGGATA+TGG | 0.341554 | 6.3:-8954245 | None:intergenic |
| CTTAATGAATCTGCCACTTC+TGG | 0.352562 | 6.3:+8954536 | MS.gene86112:CDS |
| AAAGGTGTCATACCACTAAA+AGG | 0.354121 | 6.3:+8954710 | MS.gene86112:CDS |
| TCAGCAATTATGCACGTAAC+TGG | 0.375098 | 6.3:-8954569 | None:intergenic |
| AGGTTATGTGAAAGCCTCTA+AGG | 0.390826 | 6.3:-8954301 | None:intergenic |
| TAAGCGTTTGTGATTGTATT+CGG | 0.416700 | 6.3:-8954333 | None:intergenic |
| GCTGGACTAAAGAAAACAAC+AGG | 0.434619 | 6.3:-8954638 | None:intergenic |
| GTGAGACTATCAAAGGCATT+TGG | 0.439338 | 6.3:-8954371 | None:intergenic |
| TCCCCATCGCCGTCGATTGA+AGG | 0.445545 | 6.3:-8954428 | None:intergenic |
| TTAATTCCATATCCAGTTCA+AGG | 0.449656 | 6.3:+8954239 | MS.gene86112:CDS |
| TACCTTCAATCGACGGCGAT+GGG | 0.461817 | 6.3:+8954426 | MS.gene86112:CDS |
| GAAGTTCGCGAAAAGGTTGT+AGG | 0.477376 | 6.3:-8954505 | None:intergenic |
| GGATTGATATGGCCTTGAAC+TGG | 0.479128 | 6.3:-8954251 | None:intergenic |
| ACATTTGAGGCTATTCCTGA+TGG | 0.479332 | 6.3:+8954401 | MS.gene86112:CDS |
| TCGATTGAAGGTAGACCATC+AGG | 0.487781 | 6.3:-8954416 | None:intergenic |
| CAAAATGTACATGCATTGGC+TGG | 0.536946 | 6.3:-8954656 | None:intergenic |
| CTAGCAAGAAGTTCGCGAAA+AGG | 0.539276 | 6.3:-8954512 | None:intergenic |
| CTACCTTCAATCGACGGCGA+TGG | 0.543140 | 6.3:+8954425 | MS.gene86112:CDS |
| AGTCCAAAATGTACATGCAT+TGG | 0.552178 | 6.3:-8954660 | None:intergenic |
| TCAATCGACGGCGATGGGGA+TGG | 0.572896 | 6.3:+8954431 | MS.gene86112:CDS |
| TGGAGGCGCAAGACCAGAAG+TGG | 0.580392 | 6.3:-8954549 | None:intergenic |
| AAAATCAGTGAGACTATCAA+AGG | 0.611232 | 6.3:-8954378 | None:intergenic |
| ACCTTCAATCGACGGCGATG+GGG | 0.622743 | 6.3:+8954427 | MS.gene86112:CDS |
| GCAATTATGCACGTAACTGG+AGG | 0.635156 | 6.3:-8954566 | None:intergenic |
| ATTGTATTCGGTGTTGACAA+AGG | 0.653219 | 6.3:-8954321 | None:intergenic |
| GATGGTCTACCTTCAATCGA+CGG | 0.659352 | 6.3:+8954419 | MS.gene86112:CDS |
| TATGGAATTAACACTGCATG+TGG | 0.667789 | 6.3:-8954227 | None:intergenic |
| AAACGCTTACTCAAATCTAG+AGG | 0.668124 | 6.3:+8954347 | MS.gene86112:CDS |
| CTGGACTAAAGAAAACAACA+GGG | 0.724710 | 6.3:-8954637 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATTCATATGACATATATA+AGG | + | chr6.3:8954783-8954802 | MS.gene86112:intron | 20.0% |
| !! | TTACTTACAATGTTTGATAA+AGG | + | chr6.3:8954692-8954711 | MS.gene86112:CDS | 20.0% |
| !!! | ATTTTTGCTAGTTTGATTAA+TGG | - | chr6.3:8954275-8954294 | None:intergenic | 20.0% |
| !! | AATTGATTGTTACCTTTTAG+TGG | - | chr6.3:8954725-8954744 | None:intergenic | 25.0% |
| !!! | AGTCTTCTTTTTTACTTCAT+AGG | + | chr6.3:8954745-8954764 | MS.gene86112:intron | 25.0% |
| !!! | GTTTGATTAATGGATTGATA+TGG | - | chr6.3:8954265-8954284 | None:intergenic | 25.0% |
| AAAATCAGTGAGACTATCAA+AGG | - | chr6.3:8954381-8954400 | None:intergenic | 30.0% | |
| TAAGCGTTTGTGATTGTATT+CGG | - | chr6.3:8954336-8954355 | None:intergenic | 30.0% | |
| TTAATTCCATATCCAGTTCA+AGG | + | chr6.3:8954239-8954258 | MS.gene86112:CDS | 30.0% | |
| !!! | TCTCACTGATTTTACATTTG+AGG | + | chr6.3:8954388-8954407 | MS.gene86112:CDS | 30.0% |
| AAACGCTTACTCAAATCTAG+AGG | + | chr6.3:8954347-8954366 | MS.gene86112:CDS | 35.0% | |
| AGTCCAAAATGTACATGCAT+TGG | - | chr6.3:8954663-8954682 | None:intergenic | 35.0% | |
| CTGGACTAAAGAAAACAACA+GGG | - | chr6.3:8954640-8954659 | None:intergenic | 35.0% | |
| GCAAAAATTCTTCACCTTAG+AGG | + | chr6.3:8954287-8954306 | MS.gene86112:CDS | 35.0% | |
| TATGGAATTAACACTGCATG+TGG | - | chr6.3:8954230-8954249 | None:intergenic | 35.0% | |
| ! | AATGCATGTACATTTTGGAC+TGG | + | chr6.3:8954662-8954681 | MS.gene86112:CDS | 35.0% |
| !! | AAAGGTGTCATACCACTAAA+AGG | + | chr6.3:8954710-8954729 | MS.gene86112:CDS | 35.0% |
| !! | ATTGTATTCGGTGTTGACAA+AGG | - | chr6.3:8954324-8954343 | None:intergenic | 35.0% |
| AGGTTATGTGAAAGCCTCTA+AGG | - | chr6.3:8954304-8954323 | None:intergenic | 40.0% | |
| GCTGGACTAAAGAAAACAAC+AGG | - | chr6.3:8954641-8954660 | None:intergenic | 40.0% | |
| TCAGCAATTATGCACGTAAC+TGG | - | chr6.3:8954572-8954591 | None:intergenic | 40.0% | |
| ! | ACATTTGAGGCTATTCCTGA+TGG | + | chr6.3:8954401-8954420 | MS.gene86112:CDS | 40.0% |
| ! | ATATGGCCTTGAACTGGATA+TGG | - | chr6.3:8954248-8954267 | None:intergenic | 40.0% |
| ! | CAAAATGTACATGCATTGGC+TGG | - | chr6.3:8954659-8954678 | None:intergenic | 40.0% |
| ! | CAGCCAATGCATGTACATTT+TGG | + | chr6.3:8954657-8954676 | MS.gene86112:CDS | 40.0% |
| ! | CTTAATGAATCTGCCACTTC+TGG | + | chr6.3:8954536-8954555 | MS.gene86112:CDS | 40.0% |
| !! | GTGAGACTATCAAAGGCATT+TGG | - | chr6.3:8954374-8954393 | None:intergenic | 40.0% |
| CTAGCAAGAAGTTCGCGAAA+AGG | - | chr6.3:8954515-8954534 | None:intergenic | 45.0% | |
| GAAGTTCGCGAAAAGGTTGT+AGG | - | chr6.3:8954508-8954527 | None:intergenic | 45.0% | |
| GATGGTCTACCTTCAATCGA+CGG | + | chr6.3:8954419-8954438 | MS.gene86112:CDS | 45.0% | |
| GCAATTATGCACGTAACTGG+AGG | - | chr6.3:8954569-8954588 | None:intergenic | 45.0% | |
| TCGATTGAAGGTAGACCATC+AGG | - | chr6.3:8954419-8954438 | None:intergenic | 45.0% | |
| ! | GGATTGATATGGCCTTGAAC+TGG | - | chr6.3:8954254-8954273 | None:intergenic | 45.0% |
| TACCTTCAATCGACGGCGAT+GGG | + | chr6.3:8954426-8954445 | MS.gene86112:CDS | 50.0% | |
| ACCTTCAATCGACGGCGATG+GGG | + | chr6.3:8954427-8954446 | MS.gene86112:CDS | 55.0% | |
| CTACCTTCAATCGACGGCGA+TGG | + | chr6.3:8954425-8954444 | MS.gene86112:CDS | 55.0% | |
| TCAATCGACGGCGATGGGGA+TGG | + | chr6.3:8954431-8954450 | MS.gene86112:CDS | 60.0% | |
| ! | TCCCCATCGCCGTCGATTGA+AGG | - | chr6.3:8954431-8954450 | None:intergenic | 60.0% |
| ! | TGGAGGCGCAAGACCAGAAG+TGG | - | chr6.3:8954552-8954571 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 8954212 | 8954812 | 8954212 | ID=MS.gene86112 |
| chr6.3 | mRNA | 8954212 | 8954812 | 8954212 | ID=MS.gene86112.t1;Parent=MS.gene86112 |
| chr6.3 | exon | 8954212 | 8954731 | 8954212 | ID=MS.gene86112.t1.exon1;Parent=MS.gene86112.t1 |
| chr6.3 | CDS | 8954212 | 8954731 | 8954212 | ID=cds.MS.gene86112.t1;Parent=MS.gene86112.t1 |
| chr6.3 | exon | 8954805 | 8954812 | 8954805 | ID=MS.gene86112.t1.exon2;Parent=MS.gene86112.t1 |
| chr6.3 | CDS | 8954805 | 8954812 | 8954805 | ID=cds.MS.gene86112.t1;Parent=MS.gene86112.t1 |
| Gene Sequence |
| Protein sequence |
