Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86452.t1 | XP_003612502.1 | 93.6 | 267 | 17 | 0 | 2 | 268 | 1 | 267 | 1.10E-130 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86452.t1 | G7K428 | 93.6 | 267 | 17 | 0 | 2 | 268 | 1 | 267 | 7.8e-131 | 476.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050642 | MS.gene86452 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene052176 | MS.gene86452 | 0.806554 | 7.77E-50 | -1.69E-46 |
| MS.gene052309 | MS.gene86452 | -0.804121 | 2.51E-49 | -1.69E-46 |
| MS.gene054537 | MS.gene86452 | 0.807533 | 4.82E-50 | -1.69E-46 |
| MS.gene059710 | MS.gene86452 | 0.811696 | 6.15E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene86452 | 0.829452 | 5.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86452.t1 | MTR_5g025750 | 93.633 | 267 | 17 | 0 | 2 | 268 | 1 | 267 | 2.27e-161 | 448 |
| MS.gene86452.t1 | MTR_4g068770 | 44.395 | 223 | 102 | 5 | 57 | 268 | 51 | 262 | 5.52e-56 | 181 |
| MS.gene86452.t1 | MTR_4g082590 | 38.418 | 177 | 95 | 3 | 96 | 266 | 123 | 291 | 1.68e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86452.t1 | AT4G19390 | 65.746 | 181 | 62 | 0 | 88 | 268 | 93 | 273 | 4.39e-83 | 250 |
| MS.gene86452.t1 | AT4G19390 | 65.698 | 172 | 59 | 0 | 97 | 268 | 14 | 185 | 4.13e-79 | 237 |
| MS.gene86452.t1 | AT5G13720 | 48.925 | 186 | 81 | 4 | 93 | 268 | 80 | 261 | 1.41e-53 | 174 |
Find 49 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATGGTGTTATAGTAAA+TGG | 0.195387 | 5.1:+16172506 | None:intergenic |
| TCTGATAGATCAAATCTATT+TGG | 0.202531 | 5.1:-16170374 | MS.gene86452:CDS |
| TGTTGGGATATAAAAGTTTC+AGG | 0.236692 | 5.1:-16172430 | MS.gene86452:CDS |
| TGTCGGTTTCTTGCTATTCT+TGG | 0.241873 | 5.1:-16171786 | MS.gene86452:CDS |
| AATTCTATCTTCAACTCTTA+TGG | 0.246119 | 5.1:-16172467 | MS.gene86452:CDS |
| CCGTATGTTTCTTCCAATTC+GGG | 0.320774 | 5.1:-16172338 | MS.gene86452:CDS |
| GCCGTATGTTTCTTCCAATT+CGG | 0.324240 | 5.1:-16172339 | MS.gene86452:CDS |
| GGAACGGTGATGCTAGTCTT+TGG | 0.339539 | 5.1:-16170464 | MS.gene86452:CDS |
| AACAGAATCAAAACCCGAAT+TGG | 0.360928 | 5.1:+16172325 | None:intergenic |
| CTTCTCAGGAACGACCAAAA+TGG | 0.370797 | 5.1:-16170225 | MS.gene86452:intron |
| TCTTCAACTCTTATGGCAAA+AGG | 0.400866 | 5.1:-16172460 | MS.gene86452:CDS |
| TGATTCTGTTATATCTCATC+AGG | 0.409343 | 5.1:-16172312 | MS.gene86452:CDS |
| ATTTGGCTTATTCACTTTGA+AGG | 0.417143 | 5.1:-16170357 | MS.gene86452:intron |
| ATAGTGATGCTGCTTCTGAT+TGG | 0.427966 | 5.1:-16170154 | MS.gene86452:CDS |
| TCAGGAGATGCCAGGGAAGT+TGG | 0.436822 | 5.1:-16172294 | MS.gene86452:CDS |
| GGCAAAAGGGTCTCTGTGTT+GGG | 0.437813 | 5.1:-16172446 | MS.gene86452:CDS |
| TCTATGCCTTCCAACTTCCC+TGG | 0.462310 | 5.1:+16172284 | None:intergenic |
| TTTGTTTGACAGAAGTAAGA+AGG | 0.477435 | 5.1:-16170131 | MS.gene86452:CDS |
| TGGCAAAAGGGTCTCTGTGT+TGG | 0.478098 | 5.1:-16172447 | MS.gene86452:CDS |
| TGTAGGTGATTTATAGATGT+CGG | 0.486045 | 5.1:-16171803 | MS.gene86452:intron |
| CTTCAACTCTTATGGCAAAA+GGG | 0.490539 | 5.1:-16172459 | MS.gene86452:CDS |
| TGACAGTGAATTAAAGATGA+TGG | 0.495193 | 5.1:+16172491 | None:intergenic |
| GAAGAAACATACGGCGATGA+AGG | 0.499701 | 5.1:+16172347 | None:intergenic |
| CACTATCACATGGCCAACCT+TGG | 0.502137 | 5.1:+16170171 | None:intergenic |
| TTTGCTGTCCAAGCTGAATG+AGG | 0.509196 | 5.1:-16170038 | MS.gene86452:CDS |
| TTAATTAGCCTCATTCAGCT+TGG | 0.510184 | 5.1:+16170030 | None:intergenic |
| ATCAATTCTATGCTTCATCA+AGG | 0.516481 | 5.1:-16171742 | MS.gene86452:intron |
| GCAATTGAATTACTTTACTA+CGG | 0.524763 | 5.1:+16171067 | None:intergenic |
| ATATCTCATCAGGAGATGCC+AGG | 0.525608 | 5.1:-16172302 | MS.gene86452:CDS |
| AATAGATTTGATCTATCAGA+AGG | 0.529196 | 5.1:+16170377 | None:intergenic |
| AACCATGATGAAACTGTCTC+AGG | 0.536101 | 5.1:-16172543 | None:intergenic |
| GTGATGCTAGTCTTTGGAAT+GGG | 0.541127 | 5.1:-16170458 | MS.gene86452:CDS |
| CAGAAGCATAGCAAATCCAC+AGG | 0.557949 | 5.1:+16170094 | None:intergenic |
| TGCCTGAGACAGTTTCATCA+TGG | 0.560858 | 5.1:+16172541 | None:intergenic |
| AAAAGACTCTGCGACAAATG+TGG | 0.568167 | 5.1:+16171107 | None:intergenic |
| AAGTTGGAAGGCATAGAAGA+AGG | 0.568422 | 5.1:-16172278 | MS.gene86452:CDS |
| GATGAAACTGTCTCAGGCAT+TGG | 0.571330 | 5.1:-16172537 | MS.gene86452:CDS |
| GGTGATGCTAGTCTTTGGAA+TGG | 0.578084 | 5.1:-16170459 | MS.gene86452:CDS |
| AATGAACTGAAAACCAAGGT+TGG | 0.583449 | 5.1:-16170184 | MS.gene86452:CDS |
| CAATTGCTGATAGAAGCTCT+TGG | 0.584191 | 5.1:-16171051 | MS.gene86452:intron |
| CATAGAAGAAGGCATTGAGA+AGG | 0.605938 | 5.1:-16172267 | MS.gene86452:intron |
| GAGATGCCAGGGAAGTTGGA+AGG | 0.623600 | 5.1:-16172290 | MS.gene86452:CDS |
| TATCTCATCAGGAGATGCCA+GGG | 0.625438 | 5.1:-16172301 | MS.gene86452:CDS |
| CCCGAATTGGAAGAAACATA+CGG | 0.633806 | 5.1:+16172338 | None:intergenic |
| GGCTACTATTCAAACCCCTG+TGG | 0.692649 | 5.1:-16170110 | MS.gene86452:CDS |
| GAAGCAGCATCACTATCACA+TGG | 0.692685 | 5.1:+16170161 | None:intergenic |
| AGTGAATGAACTGAAAACCA+AGG | 0.699304 | 5.1:-16170188 | MS.gene86452:CDS |
| AGAAGCATAGCAAATCCACA+GGG | 0.722447 | 5.1:+16170095 | None:intergenic |
| GAAGCATAGCAAATCCACAG+GGG | 0.796212 | 5.1:+16170096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATAACAAACAATTAA+AGG | + | chr5.1:16170693-16170712 | None:intergenic | 15.0% |
| !!! | TCTTTTTTTCCTTAAAATTT+AGG | - | chr5.1:16171715-16171734 | MS.gene86452:intron | 15.0% |
| !!! | TTATGTATAGATTATTTCTA+TGG | - | chr5.1:16170395-16170414 | MS.gene86452:CDS | 15.0% |
| !! | AAATTATTGTATTTGCCAAT+AGG | - | chr5.1:16170898-16170917 | MS.gene86452:intron | 20.0% |
| !! | AGATTTCCTTAACTAAATTT+GGG | + | chr5.1:16171215-16171234 | None:intergenic | 20.0% |
| !! | ATAAGTTATTTATCAACACA+AGG | + | chr5.1:16170337-16170356 | None:intergenic | 20.0% |
| !! | CTAAAGTTATTTAATCACAA+AGG | + | chr5.1:16171638-16171657 | None:intergenic | 20.0% |
| !! | TATGATAGCATATTAGAATT+TGG | + | chr5.1:16171071-16171090 | None:intergenic | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | - | chr5.1:16170461-16170480 | MS.gene86452:CDS | 20.0% |
| !!! | ATTGGCAAATACAATAATTT+TGG | + | chr5.1:16170898-16170917 | None:intergenic | 20.0% |
| !!! | GTTTTTATATTCAACCATTT+TGG | + | chr5.1:16172361-16172380 | None:intergenic | 20.0% |
| !!! | TCTATGAATAGTTTTGAATT+TGG | - | chr5.1:16170710-16170729 | MS.gene86452:intron | 20.0% |
| ! | AATAGATTTGATCTATCAGA+AGG | + | chr5.1:16172195-16172214 | None:intergenic | 25.0% |
| ! | AATTCTATCTTCAACTCTTA+TGG | - | chr5.1:16170102-16170121 | MS.gene86452:CDS | 25.0% |
| ! | AGTTCAATTTCATTCATGAT+AGG | + | chr5.1:16171663-16171682 | None:intergenic | 25.0% |
| ! | ATTATTCAATTTGACATGCA+GGG | - | chr5.1:16171437-16171456 | MS.gene86452:intron | 25.0% |
| ! | ATTATTCACTTTCTCAAACT+GGG | - | chr5.1:16171336-16171355 | MS.gene86452:intron | 25.0% |
| ! | CATTCTAACAATTATCCTAT+TGG | + | chr5.1:16170916-16170935 | None:intergenic | 25.0% |
| ! | CGATAAGAGTTTATAAAAAG+AGG | + | chr5.1:16171783-16171802 | None:intergenic | 25.0% |
| ! | GAGATTTCCTTAACTAAATT+TGG | + | chr5.1:16171216-16171235 | None:intergenic | 25.0% |
| ! | GCAATTGAATTACTTTACTA+CGG | + | chr5.1:16171505-16171524 | None:intergenic | 25.0% |
| ! | GTTCAATTTCATTCATGATA+GGG | + | chr5.1:16171662-16171681 | None:intergenic | 25.0% |
| ! | TCTGATAGATCAAATCTATT+TGG | - | chr5.1:16172195-16172214 | MS.gene86452:intron | 25.0% |
| ! | TGTGTTACATAGTTAAGAAA+TGG | + | chr5.1:16171592-16171611 | None:intergenic | 25.0% |
| ! | TTGAGAAAGTGAATAATCTT+CGG | + | chr5.1:16171333-16171352 | None:intergenic | 25.0% |
| !! | AATAGTATGCTTTTGTGATT+TGG | - | chr5.1:16170980-16170999 | MS.gene86452:intron | 25.0% |
| !! | TCACAAAAGCATACTATTAA+AGG | + | chr5.1:16170978-16170997 | None:intergenic | 25.0% |
| !! | TGAGTTAGTCCTAAATTTTA+AGG | + | chr5.1:16171727-16171746 | None:intergenic | 25.0% |
| !!! | AAACTACGGTTTATTTTATG+AGG | + | chr5.1:16171563-16171582 | None:intergenic | 25.0% |
| !!! | GCTGTTTTAAGTAGTTAATT+AGG | - | chr5.1:16170433-16170452 | MS.gene86452:CDS | 25.0% |
| !!! | TTGTAATCATTGGTTTGATT+TGG | - | chr5.1:16170621-16170640 | MS.gene86452:intron | 25.0% |
| ACTGAATAGTAACTACAAGT+GGG | - | chr5.1:16171003-16171022 | MS.gene86452:intron | 30.0% | |
| AGAAATGGAACAAGAAACTA+CGG | + | chr5.1:16171577-16171596 | None:intergenic | 30.0% | |
| ATCAATTCTATGCTTCATCA+AGG | - | chr5.1:16170827-16170846 | MS.gene86452:intron | 30.0% | |
| CATTATTCAATTTGACATGC+AGG | - | chr5.1:16171436-16171455 | MS.gene86452:intron | 30.0% | |
| GAAAAATCCAAGTTCAACAT+GGG | + | chr5.1:16171820-16171839 | None:intergenic | 30.0% | |
| GAATGAAATTGAACTGATAC+TGG | - | chr5.1:16171668-16171687 | MS.gene86452:intron | 30.0% | |
| GATTATTCACTTTCTCAAAC+TGG | - | chr5.1:16171335-16171354 | MS.gene86452:intron | 30.0% | |
| GTTAGACCTAAATGTTAACA+CGG | + | chr5.1:16171925-16171944 | None:intergenic | 30.0% | |
| GTTAGGCTTAAATTTGAAGA+TGG | - | chr5.1:16171977-16171996 | MS.gene86452:intron | 30.0% | |
| TGACAGTGAATTAAAGATGA+TGG | + | chr5.1:16170081-16170100 | None:intergenic | 30.0% | |
| TGATTCTGTTATATCTCATC+AGG | - | chr5.1:16170257-16170276 | MS.gene86452:intron | 30.0% | |
| TGTAGGTGATTTATAGATGT+CGG | - | chr5.1:16170766-16170785 | MS.gene86452:intron | 30.0% | |
| TGTGATTCTCTTCTTTCTAA+TGG | - | chr5.1:16172048-16172067 | MS.gene86452:intron | 30.0% | |
| TGTTGGGATATAAAAGTTTC+AGG | - | chr5.1:16170139-16170158 | MS.gene86452:CDS | 30.0% | |
| TTCTACTTCGTTGTAATCAT+TGG | - | chr5.1:16170611-16170630 | MS.gene86452:intron | 30.0% | |
| TTGGTCCGTGTATTAATATT+GGG | - | chr5.1:16171874-16171893 | MS.gene86452:intron | 30.0% | |
| TTTGTTTGACAGAAGTAAGA+AGG | - | chr5.1:16172438-16172457 | MS.gene86452:CDS | 30.0% | |
| ! | ACTCTAAAAGCTATCTCATA+TGG | + | chr5.1:16171177-16171196 | None:intergenic | 30.0% |
| ! | ATTTGGCTTATTCACTTTGA+AGG | - | chr5.1:16172212-16172231 | MS.gene86452:intron | 30.0% |
| ! | CATGTAGATCTCTATCTTTT+AGG | - | chr5.1:16172084-16172103 | MS.gene86452:intron | 30.0% |
| ! | GTTTTTCTGATGTATTGTGT+AGG | - | chr5.1:16170749-16170768 | MS.gene86452:intron | 30.0% |
| !! | AAATCCTACTGACTTTGATA+AGG | + | chr5.1:16172269-16172288 | None:intergenic | 30.0% |
| !! | AGATCTCTATCTTTTAGGAA+CGG | - | chr5.1:16172089-16172108 | MS.gene86452:intron | 30.0% |
| !! | GATGATGGTGTTATAGTAAA+TGG | + | chr5.1:16170066-16170085 | None:intergenic | 30.0% |
| !! | TTGCTATTCTTGGAGTTTTT+GGG | - | chr5.1:16170793-16170812 | MS.gene86452:intron | 30.0% |
| !!! | ATCATGTAGTCTTGTTTTCT+TGG | + | chr5.1:16170941-16170960 | None:intergenic | 30.0% |
| AAAAGCTATCTCATATGGTG+AGG | + | chr5.1:16171172-16171191 | None:intergenic | 35.0% | |
| AACAGAATCAAAACCCGAAT+TGG | + | chr5.1:16170247-16170266 | None:intergenic | 35.0% | |
| AATGAACTGAAAACCAAGGT+TGG | - | chr5.1:16172385-16172404 | MS.gene86452:CDS | 35.0% | |
| ACTTTCCTTAATTCGTACCA+AGG | + | chr5.1:16171270-16171289 | None:intergenic | 35.0% | |
| AGTGAATGAACTGAAAACCA+AGG | - | chr5.1:16172381-16172400 | MS.gene86452:CDS | 35.0% | |
| CAATGACAACACTAACACAA+AGG | + | chr5.1:16172011-16172030 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACGAAAT+CGG | - | chr5.1:16171739-16171758 | MS.gene86452:intron | 35.0% | |
| CTAACTCATCGTTACAAAAC+TGG | + | chr5.1:16171962-16171981 | None:intergenic | 35.0% | |
| CTGATACCGTGTTAACATTT+AGG | - | chr5.1:16171916-16171935 | MS.gene86452:intron | 35.0% | |
| CTGGAACCCAAATTTAGTTA+AGG | - | chr5.1:16171206-16171225 | MS.gene86452:intron | 35.0% | |
| CTTCAACTCTTATGGCAAAA+GGG | - | chr5.1:16170110-16170129 | MS.gene86452:CDS | 35.0% | |
| CTTGGTCCGTGTATTAATAT+TGG | - | chr5.1:16171873-16171892 | MS.gene86452:intron | 35.0% | |
| CTTTCCTTAATTCGTACCAA+GGG | + | chr5.1:16171269-16171288 | None:intergenic | 35.0% | |
| GACTGAATAGTAACTACAAG+TGG | - | chr5.1:16171002-16171021 | MS.gene86452:intron | 35.0% | |
| GGAAAAATCCAAGTTCAACA+TGG | + | chr5.1:16171821-16171840 | None:intergenic | 35.0% | |
| GGCTACCCAATATTAATACA+CGG | + | chr5.1:16171882-16171901 | None:intergenic | 35.0% | |
| TAAAAGCTAGCTCATCATTG+AGG | + | chr5.1:16171034-16171053 | None:intergenic | 35.0% | |
| TCAAAGTCAGTAGGATTTAG+TGG | - | chr5.1:16172271-16172290 | MS.gene86452:CDS | 35.0% | |
| TCAACCTTATCAAAGTCAGT+AGG | - | chr5.1:16172262-16172281 | MS.gene86452:intron | 35.0% | |
| TCTTCAACTCTTATGGCAAA+AGG | - | chr5.1:16170109-16170128 | MS.gene86452:CDS | 35.0% | |
| TGACTTTGATAAGGTTGACT+AGG | + | chr5.1:16172260-16172279 | None:intergenic | 35.0% | |
| TTAACCCTTGGTACGAATTA+AGG | - | chr5.1:16171262-16171281 | MS.gene86452:intron | 35.0% | |
| ! | CTATCAGAAGGTTTTTGATC+TGG | + | chr5.1:16172183-16172202 | None:intergenic | 35.0% |
| ! | TTAATTAGCCTCATTCAGCT+TGG | + | chr5.1:16172542-16172561 | None:intergenic | 35.0% |
| !! | CAGTTTTGTAACGATGAGTT+AGG | - | chr5.1:16171960-16171979 | MS.gene86452:intron | 35.0% |
| !!! | AGAGTCTTTTTTGGGATACT+TGG | - | chr5.1:16171475-16171494 | MS.gene86452:intron | 35.0% |
| !!! | ATTTGTCGCAGAGTCTTTTT+TGG | - | chr5.1:16171466-16171485 | MS.gene86452:intron | 35.0% |
| !!! | CAATGATGAGCTAGCTTTTA+GGG | - | chr5.1:16171034-16171053 | MS.gene86452:intron | 35.0% |
| !!! | CTTGCTATTCTTGGAGTTTT+TGG | - | chr5.1:16170792-16170811 | MS.gene86452:intron | 35.0% |
| !!! | CTTTTAGAGTTGAGTTAAGC+TGG | - | chr5.1:16171187-16171206 | MS.gene86452:intron | 35.0% |
| !!! | TCAATGATGAGCTAGCTTTT+AGG | - | chr5.1:16171033-16171052 | MS.gene86452:intron | 35.0% |
| !!! | TTTGTCGCAGAGTCTTTTTT+GGG | - | chr5.1:16171467-16171486 | MS.gene86452:intron | 35.0% |
| AAAAGACTCTGCGACAAATG+TGG | + | chr5.1:16171465-16171484 | None:intergenic | 40.0% | |
| AAGTTCAACATGGGATAGGT+AGG | + | chr5.1:16171811-16171830 | None:intergenic | 40.0% | |
| ACGCCTAGTACTATTGAACT+TGG | - | chr5.1:16171855-16171874 | MS.gene86452:intron | 40.0% | |
| AGACATGTGTTGAGAGTTTG+TGG | - | chr5.1:16170587-16170606 | MS.gene86452:intron | 40.0% | |
| ATCCAAGTTCAACATGGGAT+AGG | + | chr5.1:16171815-16171834 | None:intergenic | 40.0% | |
| CAATTGCTGATAGAAGCTCT+TGG | - | chr5.1:16171518-16171537 | MS.gene86452:intron | 40.0% | |
| CACATGTCTTACAACCAGTT+TGG | + | chr5.1:16170576-16170595 | None:intergenic | 40.0% | |
| CCAATTCGTAAGTACATGTC+AGG | - | chr5.1:16171238-16171257 | MS.gene86452:intron | 40.0% | |
| CCCGAATTGGAAGAAACATA+CGG | + | chr5.1:16170234-16170253 | None:intergenic | 40.0% | |
| CCGTATGTTTCTTCCAATTC+GGG | - | chr5.1:16170231-16170250 | MS.gene86452:intron | 40.0% | |
| CCTGACATGTACTTACGAAT+TGG | + | chr5.1:16171241-16171260 | None:intergenic | 40.0% | |
| GACAACACTAACACAAAGGT+AGG | + | chr5.1:16172007-16172026 | None:intergenic | 40.0% | |
| GCCGTATGTTTCTTCCAATT+CGG | - | chr5.1:16170230-16170249 | MS.gene86452:intron | 40.0% | |
| GGACCAAGTTCAATAGTACT+AGG | + | chr5.1:16171861-16171880 | None:intergenic | 40.0% | |
| GTCTTACAACCAGTTTGGAT+CGG | + | chr5.1:16170571-16170590 | None:intergenic | 40.0% | |
| TACCTATCCCATGTTGAACT+TGG | - | chr5.1:16171810-16171829 | MS.gene86452:intron | 40.0% | |
| TCAAATAAGCCGATCCAAAC+TGG | - | chr5.1:16170559-16170578 | MS.gene86452:intron | 40.0% | |
| TCTCATATGGTGAGGTTTGT+AGG | + | chr5.1:16171164-16171183 | None:intergenic | 40.0% | |
| TTCAATAGTACTAGGCGTGA+GGG | + | chr5.1:16171853-16171872 | None:intergenic | 40.0% | |
| TTCCAATGTTTCTCCTTCTC+AGG | - | chr5.1:16172330-16172349 | MS.gene86452:CDS | 40.0% | |
| TTCCTGAGAAGGAGAAACAT+TGG | + | chr5.1:16172335-16172354 | None:intergenic | 40.0% | |
| ! | AAGTTGGAAGGCATAGAAGA+AGG | - | chr5.1:16170291-16170310 | MS.gene86452:intron | 40.0% |
| ! | AGAAGCATAGCAAATCCACA+GGG | + | chr5.1:16172477-16172496 | None:intergenic | 40.0% |
| ! | ATAGTGATGCTGCTTCTGAT+TGG | - | chr5.1:16172415-16172434 | MS.gene86452:CDS | 40.0% |
| ! | ATTTACAGGGATCTAGGACT+AGG | + | chr5.1:16171104-16171123 | None:intergenic | 40.0% |
| ! | CCATACAAACCGATTTCGTA+AGG | + | chr5.1:16171751-16171770 | None:intergenic | 40.0% |
| !! | CATAGAAGAAGGCATTGAGA+AGG | - | chr5.1:16170302-16170321 | MS.gene86452:intron | 40.0% |
| !! | CCTTACGAAATCGGTTTGTA+TGG | - | chr5.1:16171748-16171767 | MS.gene86452:CDS | 40.0% |
| !! | GTGATGCTAGTCTTTGGAAT+GGG | - | chr5.1:16172111-16172130 | MS.gene86452:intron | 40.0% |
| !! | TGTCGGTTTCTTGCTATTCT+TGG | - | chr5.1:16170783-16170802 | MS.gene86452:intron | 40.0% |
| !!! | GGAGTTTTTGGGTCTTTGAT+TGG | - | chr5.1:16170804-16170823 | MS.gene86452:intron | 40.0% |
| ATATCTCATCAGGAGATGCC+AGG | - | chr5.1:16170267-16170286 | MS.gene86452:intron | 45.0% | |
| ATTGGGTAGCCTGAATCGAT+AGG | - | chr5.1:16171891-16171910 | MS.gene86452:intron | 45.0% | |
| CACAGGACTGCACATTTACA+GGG | + | chr5.1:16171117-16171136 | None:intergenic | 45.0% | |
| CTGCACATTTACAGGGATCT+AGG | + | chr5.1:16171110-16171129 | None:intergenic | 45.0% | |
| CTTCTCAGGAACGACCAAAA+TGG | - | chr5.1:16172344-16172363 | MS.gene86452:CDS | 45.0% | |
| GAAGAAACATACGGCGATGA+AGG | + | chr5.1:16170225-16170244 | None:intergenic | 45.0% | |
| GAAGCAGCATCACTATCACA+TGG | + | chr5.1:16172411-16172430 | None:intergenic | 45.0% | |
| GAAGCATAGCAAATCCACAG+GGG | + | chr5.1:16172476-16172495 | None:intergenic | 45.0% | |
| GATGAAACTGTCTCAGGCAT+TGG | - | chr5.1:16170032-16170051 | MS.gene86452:CDS | 45.0% | |
| GGTTTGTAGGACTAGACATC+CGG | + | chr5.1:16171151-16171170 | None:intergenic | 45.0% | |
| GTTCAATAGTACTAGGCGTG+AGG | + | chr5.1:16171854-16171873 | None:intergenic | 45.0% | |
| TACATGTCAGGCTTAACCCT+TGG | - | chr5.1:16171250-16171269 | MS.gene86452:intron | 45.0% | |
| TATCTCATCAGGAGATGCCA+GGG | - | chr5.1:16170268-16170287 | MS.gene86452:intron | 45.0% | |
| TCAATAGTACTAGGCGTGAG+GGG | + | chr5.1:16171852-16171871 | None:intergenic | 45.0% | |
| TCACAGGACTGCACATTTAC+AGG | + | chr5.1:16171118-16171137 | None:intergenic | 45.0% | |
| ! | CAGAAGCATAGCAAATCCAC+AGG | + | chr5.1:16172478-16172497 | None:intergenic | 45.0% |
| ! | TTTGCTGTCCAAGCTGAATG+AGG | - | chr5.1:16172531-16172550 | MS.gene86452:CDS | 45.0% |
| !! | CATTTTGGTCGTTCCTGAGA+AGG | + | chr5.1:16172346-16172365 | None:intergenic | 45.0% |
| !! | CGAAATCGGTTTGTATGGTG+AGG | - | chr5.1:16171753-16171772 | MS.gene86452:CDS | 45.0% |
| !! | GGTGATGCTAGTCTTTGGAA+TGG | - | chr5.1:16172110-16172129 | MS.gene86452:intron | 45.0% |
| !! | GTATCAGAGCCTATCGATTC+AGG | + | chr5.1:16171903-16171922 | None:intergenic | 45.0% |
| ATCCGGAGCGTGAAATTCAC+AGG | + | chr5.1:16171134-16171153 | None:intergenic | 50.0% | |
| CAATAGTACTAGGCGTGAGG+GGG | + | chr5.1:16171851-16171870 | None:intergenic | 50.0% | |
| CACTATCACATGGCCAACCT+TGG | + | chr5.1:16172401-16172420 | None:intergenic | 50.0% | |
| CGCATCAAAGTACAGCAGAG+AGG | + | chr5.1:16172308-16172327 | None:intergenic | 50.0% | |
| GGCAAAAGGGTCTCTGTGTT+GGG | - | chr5.1:16170123-16170142 | MS.gene86452:CDS | 50.0% | |
| GGCTACTATTCAAACCCCTG+TGG | - | chr5.1:16172459-16172478 | MS.gene86452:CDS | 50.0% | |
| GTCCTGTGAATTTCACGCTC+CGG | - | chr5.1:16171129-16171148 | MS.gene86452:intron | 50.0% | |
| TCTATGCCTTCCAACTTCCC+TGG | + | chr5.1:16170288-16170307 | None:intergenic | 50.0% | |
| TGGCAAAAGGGTCTCTGTGT+TGG | - | chr5.1:16170122-16170141 | MS.gene86452:CDS | 50.0% | |
| !! | GGAACGGTGATGCTAGTCTT+TGG | - | chr5.1:16172105-16172124 | MS.gene86452:intron | 50.0% |
| GAGATGCCAGGGAAGTTGGA+AGG | - | chr5.1:16170279-16170298 | MS.gene86452:intron | 55.0% | |
| TAGGCGTGAGGGGGTCTATT+GGG | + | chr5.1:16171842-16171861 | None:intergenic | 55.0% | |
| TCAGGAGATGCCAGGGAAGT+TGG | - | chr5.1:16170275-16170294 | MS.gene86452:intron | 55.0% | |
| CTAGGCGTGAGGGGGTCTAT+TGG | + | chr5.1:16171843-16171862 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 16170030 | 16172561 | 16170030 | ID=MS.gene86452 |
| chr5.1 | mRNA | 16170030 | 16172561 | 16170030 | ID=MS.gene86452.t1;Parent=MS.gene86452 |
| chr5.1 | exon | 16172268 | 16172561 | 16172268 | ID=MS.gene86452.t1.exon1;Parent=MS.gene86452.t1 |
| chr5.1 | CDS | 16172268 | 16172561 | 16172268 | ID=cds.MS.gene86452.t1;Parent=MS.gene86452.t1 |
| chr5.1 | exon | 16171743 | 16171820 | 16171743 | ID=MS.gene86452.t1.exon2;Parent=MS.gene86452.t1 |
| chr5.1 | CDS | 16171743 | 16171820 | 16171743 | ID=cds.MS.gene86452.t1;Parent=MS.gene86452.t1 |
| chr5.1 | exon | 16171052 | 16171133 | 16171052 | ID=MS.gene86452.t1.exon3;Parent=MS.gene86452.t1 |
| chr5.1 | CDS | 16171052 | 16171133 | 16171052 | ID=cds.MS.gene86452.t1;Parent=MS.gene86452.t1 |
| chr5.1 | exon | 16170358 | 16170500 | 16170358 | ID=MS.gene86452.t1.exon4;Parent=MS.gene86452.t1 |
| chr5.1 | CDS | 16170358 | 16170500 | 16170358 | ID=cds.MS.gene86452.t1;Parent=MS.gene86452.t1 |
| chr5.1 | exon | 16170030 | 16170239 | 16170030 | ID=MS.gene86452.t1.exon5;Parent=MS.gene86452.t1 |
| chr5.1 | CDS | 16170030 | 16170239 | 16170030 | ID=cds.MS.gene86452.t1;Parent=MS.gene86452.t1 |
| Gene Sequence |
| Protein sequence |
