Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86545.t1 | XP_003612368.2 | 95.7 | 1232 | 52 | 1 | 1 | 1231 | 1 | 1232 | 0.00E+00 | 2343.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86545.t1 | F4JN26 | 37.4 | 1277 | 631 | 28 | 1 | 1231 | 1 | 1155 | 8.6e-208 | 725.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86545.t1 | G7K187 | 95.7 | 1232 | 52 | 1 | 1 | 1231 | 1 | 1232 | 0.0e+00 | 2343.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009300 | MS.gene86545 | PPI |
| MS.gene86545 | MS.gene058795 | PPI |
| MS.gene86545 | MS.gene52850 | PPI |
| MS.gene86545 | MS.gene96593 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86545.t1 | MTR_5g024250 | 95.698 | 1232 | 52 | 1 | 1 | 1231 | 1 | 1232 | 0.0 | 2441 |
| MS.gene86545.t1 | MTR_1g088720 | 24.798 | 371 | 244 | 9 | 4 | 367 | 8 | 350 | 2.00e-24 | 111 |
| MS.gene86545.t1 | MTR_3g005810 | 31.159 | 276 | 162 | 8 | 4 | 264 | 7 | 269 | 9.81e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86545.t1 | AT4G35520 | 50.820 | 427 | 198 | 3 | 1 | 418 | 1 | 424 | 1.61e-130 | 430 |
| MS.gene86545.t1 | AT4G35520 | 54.545 | 418 | 168 | 10 | 820 | 1231 | 779 | 1180 | 7.26e-128 | 423 |
| MS.gene86545.t1 | AT4G35520 | 54.286 | 420 | 170 | 10 | 818 | 1231 | 528 | 931 | 9.50e-130 | 422 |
| MS.gene86545.t1 | AT4G35520 | 36.686 | 169 | 97 | 2 | 259 | 418 | 8 | 175 | 3.87e-25 | 113 |
| MS.gene86545.t1 | AT4G35520 | 57.714 | 350 | 146 | 1 | 1 | 350 | 1 | 348 | 7.32e-129 | 425 |
| MS.gene86545.t1 | AT4G35520 | 54.545 | 418 | 168 | 10 | 820 | 1231 | 752 | 1153 | 2.66e-128 | 423 |
| MS.gene86545.t1 | AT4G35520 | 54.545 | 418 | 168 | 10 | 820 | 1231 | 742 | 1143 | 2.25e-128 | 423 |
| MS.gene86545.t1 | AT4G35520 | 45.199 | 427 | 185 | 3 | 1 | 418 | 1 | 387 | 5.06e-106 | 362 |
| MS.gene86545.t1 | AT4G35520 | 54.545 | 418 | 168 | 10 | 820 | 1231 | 754 | 1155 | 2.26e-128 | 424 |
| MS.gene86545.t1 | AT4G35520 | 48.276 | 377 | 156 | 1 | 1 | 377 | 1 | 338 | 1.40e-104 | 358 |
| MS.gene86545.t1 | AT4G35520 | 52.535 | 434 | 170 | 11 | 818 | 1231 | 540 | 957 | 6.21e-126 | 412 |
| MS.gene86545.t1 | AT4G35520 | 42.857 | 119 | 68 | 0 | 259 | 377 | 8 | 126 | 7.28e-24 | 109 |
| MS.gene86545.t1 | AT4G35520 | 52.778 | 432 | 168 | 11 | 820 | 1231 | 742 | 1157 | 7.91e-125 | 414 |
| MS.gene86545.t1 | AT4G35520 | 45.199 | 427 | 185 | 3 | 1 | 418 | 1 | 387 | 6.19e-106 | 362 |
| MS.gene86545.t1 | AT4G35520 | 45.199 | 427 | 185 | 3 | 1 | 418 | 1 | 387 | 2.33e-106 | 361 |
| MS.gene86545.t1 | AT4G35520 | 50.000 | 346 | 156 | 9 | 820 | 1159 | 742 | 1076 | 9.03e-88 | 308 |
| MS.gene86545.t1 | AT4G09140 | 27.708 | 397 | 224 | 15 | 4 | 380 | 29 | 382 | 3.52e-23 | 107 |
| MS.gene86545.t1 | AT4G02460 | 26.485 | 404 | 231 | 14 | 4 | 386 | 17 | 375 | 5.72e-23 | 106 |
| MS.gene86545.t1 | AT4G02460 | 26.485 | 404 | 231 | 14 | 4 | 386 | 17 | 375 | 7.17e-23 | 106 |
Find 258 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATATATCTTGAATTTA+AGG | 0.086807 | 5.1:-14950484 | MS.gene86545:CDS |
| TACATCGAAATTTCTTAATT+TGG | 0.131266 | 5.1:-14952399 | MS.gene86545:CDS |
| ACAACTTTGAAGGAGATATT+TGG | 0.162274 | 5.1:+14951155 | None:intergenic |
| TGACTATCTTTGCAGGAATT+TGG | 0.205955 | 5.1:-14944946 | MS.gene86545:intron |
| ATTGATTGAAGTACCTTATT+GGG | 0.214424 | 5.1:+14951212 | None:intergenic |
| GATTGATTGAAGTACCTTAT+TGG | 0.215758 | 5.1:+14951211 | None:intergenic |
| GTGCAAGATTCCGGAGATTA+TGG | 0.216270 | 5.1:-14946511 | MS.gene86545:CDS |
| CGGTTATTCTGGCAATTTAC+TGG | 0.226743 | 5.1:-14948580 | MS.gene86545:CDS |
| CACTTGTAACCACTGGCTTT+GGG | 0.232639 | 5.1:-14951002 | MS.gene86545:CDS |
| TTGAATATTTAGGTATTATC+TGG | 0.241070 | 5.1:-14945458 | MS.gene86545:intron |
| GACCCTGCTTCCAAACTTCT+AGG | 0.247169 | 5.1:-14947346 | MS.gene86545:intron |
| ATCAACTACTTCATAGTTAC+AGG | 0.248733 | 5.1:-14945287 | MS.gene86545:CDS |
| CAAGCAAAGTCTTCTCATTC+AGG | 0.249081 | 5.1:+14948244 | None:intergenic |
| AACTCCAAACCGATAGCTTT+TGG | 0.249668 | 5.1:-14948206 | MS.gene86545:CDS |
| TCACTTGTAACCACTGGCTT+TGG | 0.249770 | 5.1:-14951003 | MS.gene86545:CDS |
| TCTGGATTCTTGCATCTTGC+TGG | 0.260504 | 5.1:-14946275 | MS.gene86545:CDS |
| CTTCGTCAGACCGGTTATTC+TGG | 0.261638 | 5.1:-14948591 | MS.gene86545:CDS |
| TCTTAAGGTGCGATTATGTT+TGG | 0.264068 | 5.1:-14944374 | MS.gene86545:intron |
| CATTTCTTACTGATAGTATC+AGG | 0.266001 | 5.1:+14946239 | None:intergenic |
| TTCAACAAAATGATCCATTC+AGG | 0.266010 | 5.1:-14946973 | MS.gene86545:CDS |
| AATATACTTGACATCTCTTC+TGG | 0.266206 | 5.1:-14946293 | MS.gene86545:CDS |
| CTTAAGGTGCGATTATGTTT+GGG | 0.269942 | 5.1:-14944373 | MS.gene86545:intron |
| CCTCAAAGAGAAACAAAATA+AGG | 0.270902 | 5.1:-14948622 | MS.gene86545:CDS |
| GTTTCAGTGTTTGTTGATAT+TGG | 0.273741 | 5.1:-14953515 | MS.gene86545:CDS |
| CATTTCTGAAGTCTCTTTGT+TGG | 0.291486 | 5.1:-14952321 | MS.gene86545:CDS |
| AACGATATCATAAAGCTTAC+TGG | 0.297572 | 5.1:-14950940 | MS.gene86545:CDS |
| CATAGCGGTGGACATGCTTT+TGG | 0.298068 | 5.1:+14948545 | None:intergenic |
| AAAAGGTCATCAAACAGTTC+TGG | 0.303292 | 5.1:-14949185 | MS.gene86545:CDS |
| GAAACGGAGTTCAGAGGTTC+TGG | 0.308935 | 5.1:-14947050 | MS.gene86545:CDS |
| AACAGACCCAACATTATAAA+AGG | 0.310471 | 5.1:-14947526 | MS.gene86545:CDS |
| TCCAATAGATCTTCATTGTT+GGG | 0.311658 | 5.1:+14947187 | None:intergenic |
| CTAAACAATCCTTACGATCT+TGG | 0.315143 | 5.1:+14948751 | None:intergenic |
| CCCCAACAATGAAGATCTAT+TGG | 0.321390 | 5.1:-14947188 | MS.gene86545:CDS |
| TTCTAACACACTCAGGTAAT+AGG | 0.325451 | 5.1:+14947554 | None:intergenic |
| CTCCAACAAAGCCACTTATA+TGG | 0.326027 | 5.1:-14949044 | MS.gene86545:CDS |
| ATGATACACATTTCACAAAA+AGG | 0.328678 | 5.1:-14947606 | MS.gene86545:CDS |
| ACCAATGATATTAATGATCT+TGG | 0.347298 | 5.1:-14947913 | MS.gene86545:CDS |
| CACTGTTCCTTTAGTCAACT+TGG | 0.348856 | 5.1:-14944181 | MS.gene86545:CDS |
| TTGTTTCAGAATTGATATCT+AGG | 0.349287 | 5.1:-14946537 | MS.gene86545:intron |
| CAACTTTGAAGGAGATATTT+GGG | 0.351489 | 5.1:+14951156 | None:intergenic |
| TTCAATATCAACAACTTTGA+AGG | 0.351846 | 5.1:+14951145 | None:intergenic |
| CATGCAGATATATCAAAGTT+TGG | 0.352223 | 5.1:-14948777 | MS.gene86545:intron |
| TCCAAGATCATTAATATCAT+TGG | 0.357505 | 5.1:+14947912 | None:intergenic |
| GCATACATCCCTCTGTTTCC+AGG | 0.358909 | 5.1:-14944303 | MS.gene86545:intron |
| CCGGAGATTATGGGACTAAA+TGG | 0.359448 | 5.1:-14946501 | MS.gene86545:CDS |
| GAAATAATGACAAGAACTTA+TGG | 0.365886 | 5.1:-14952299 | MS.gene86545:CDS |
| CTCCTTCTACTTCTATGAAA+TGG | 0.368433 | 5.1:+14947430 | None:intergenic |
| GCTTTAGCTCTTCAACTAGA+AGG | 0.372548 | 5.1:+14944324 | None:intergenic |
| TGGATTTGTTTCCTCCGAAC+TGG | 0.374132 | 5.1:+14951368 | None:intergenic |
| AAAATTCTGAATCCTTTAGA+AGG | 0.374608 | 5.1:-14945221 | MS.gene86545:intron |
| TTTACCTGCTTTGGCTGAAA+TGG | 0.374834 | 5.1:+14948988 | None:intergenic |
| CAACAAAGAGACTTCAGAAA+TGG | 0.375063 | 5.1:+14952322 | None:intergenic |
| ATTGAGCTACGAACAGATTC+CGG | 0.378058 | 5.1:+14953713 | None:intergenic |
| AACCTATCTAGATGCTGAAC+AGG | 0.381349 | 5.1:-14945420 | MS.gene86545:CDS |
| TCTAGGGAAGTGCAAGATTC+CGG | 0.388056 | 5.1:-14946520 | MS.gene86545:CDS |
| AATACTTTCCTATATCCATT+TGG | 0.389721 | 5.1:+14952272 | None:intergenic |
| CAGTAAATTGCCAGAATAAC+CGG | 0.392348 | 5.1:+14948581 | None:intergenic |
| AACCATATAAGTGGCTTTGT+TGG | 0.392990 | 5.1:+14949042 | None:intergenic |
| CAGGGAACAGATTAAAGATT+GGG | 0.394408 | 5.1:-14945268 | MS.gene86545:CDS |
| CAGGTCCCTTGCAAACGAAC+TGG | 0.395404 | 5.1:+14950612 | None:intergenic |
| AACCCTTGCTGTTATTGATC+AGG | 0.398168 | 5.1:-14946153 | MS.gene86545:intron |
| AATATTATCATAGAAACTTT+CGG | 0.404601 | 5.1:+14948440 | None:intergenic |
| ATCGAAATTTCTTAATTTGG+CGG | 0.404648 | 5.1:-14952396 | MS.gene86545:CDS |
| TACTCGAGATGGGCTGGAAT+TGG | 0.405515 | 5.1:-14953194 | MS.gene86545:CDS |
| ATTGTCTCCCTCTAGATTCA+TGG | 0.408060 | 5.1:-14948050 | MS.gene86545:CDS |
| CTGAATTGGAAGCCCCAATA+AGG | 0.417478 | 5.1:-14951225 | MS.gene86545:intron |
| AGAAAGGAAGTAGGCACAAC+AGG | 0.420276 | 5.1:-14952119 | MS.gene86545:intron |
| AACCACTGGCTTTGGGGTGG+AGG | 0.425969 | 5.1:-14950995 | MS.gene86545:CDS |
| TACTCCAAAAGCTATCGGTT+TGG | 0.428894 | 5.1:+14948202 | None:intergenic |
| TAAAGAAATATTCAACAGAT+TGG | 0.428963 | 5.1:-14947647 | MS.gene86545:CDS |
| ATGACAATCATCAGTGCTAC+AGG | 0.429264 | 5.1:-14948692 | MS.gene86545:CDS |
| AGGGTTCTGCCAGCCATGAT+TGG | 0.431893 | 5.1:+14946170 | None:intergenic |
| CATGTCAAGGAATGCTAACC+AGG | 0.437046 | 5.1:-14947728 | MS.gene86545:CDS |
| CTTAAATTCAAGATATATGC+AGG | 0.440812 | 5.1:+14950485 | None:intergenic |
| AAGCTTACTGGATACATATC+AGG | 0.441992 | 5.1:-14950928 | MS.gene86545:CDS |
| TTCCAATAGATCTTCATTGT+TGG | 0.442789 | 5.1:+14947186 | None:intergenic |
| TTCATTTAGCTTGTCTGAAG+TGG | 0.442895 | 5.1:+14948716 | None:intergenic |
| ATGGACGGCCAAATGGATAT+AGG | 0.443464 | 5.1:-14952280 | MS.gene86545:CDS |
| TTTAAATCAGCCTCCCGAAA+TGG | 0.444086 | 5.1:-14947398 | MS.gene86545:CDS |
| ATGCAGGTACTGCCAGAGAT+TGG | 0.445165 | 5.1:-14945312 | MS.gene86545:intron |
| CTCCATTTCATAGAAGTAGA+AGG | 0.445805 | 5.1:-14947432 | MS.gene86545:CDS |
| TTCATTGTGCAGTGTGCTCA+TGG | 0.448403 | 5.1:-14944213 | MS.gene86545:intron |
| CACTCAGGTAATAGGCAGTC+TGG | 0.454013 | 5.1:+14947562 | None:intergenic |
| TCATAGAAACTTTCGGCAGC+AGG | 0.454172 | 5.1:+14948447 | None:intergenic |
| AAGAGAAAAGCAACCTGGAT+TGG | 0.454580 | 5.1:+14951348 | None:intergenic |
| GTAGAGCAACTCTTTAGAAA+AGG | 0.454936 | 5.1:+14948282 | None:intergenic |
| GGTTATGAGTGCCATGGGTT+CGG | 0.455266 | 5.1:-14948339 | MS.gene86545:CDS |
| TGGTATTCAGCAACACAAAC+AGG | 0.455374 | 5.1:-14948030 | MS.gene86545:CDS |
| TGCAAGATTCCGGAGATTAT+GGG | 0.455509 | 5.1:-14946510 | MS.gene86545:CDS |
| TGACTTAAAAGCTTATGAAC+AGG | 0.455665 | 5.1:+14950593 | None:intergenic |
| GGCGACGATAAGACCTTTAC+CGG | 0.456254 | 5.1:-14953732 | MS.gene86545:CDS |
| GCAACACAAACAGGTAACTT+TGG | 0.459066 | 5.1:-14948021 | MS.gene86545:CDS |
| ATCTTCTTGAACCATATAAG+TGG | 0.459616 | 5.1:+14949033 | None:intergenic |
| AAAGGTCATCAAACAGTTCT+GGG | 0.460494 | 5.1:-14949184 | MS.gene86545:CDS |
| TATGAATCACCTTCATATCC+AGG | 0.462141 | 5.1:+14950893 | None:intergenic |
| AATGACGCTGCTGAGATTGA+AGG | 0.462435 | 5.1:-14947013 | MS.gene86545:CDS |
| TATTCAACAGATTGGTTGAC+TGG | 0.463602 | 5.1:-14947639 | MS.gene86545:CDS |
| ATCCACCTGATGAAGAACTT+TGG | 0.466886 | 5.1:+14946205 | None:intergenic |
| CTCAAAGAGAAACAAAATAA+GGG | 0.467320 | 5.1:-14948621 | MS.gene86545:CDS |
| TGGATATAGGAAAGTATTGA+AGG | 0.472768 | 5.1:-14952267 | MS.gene86545:intron |
| TCGAGATGAGGATTCTTGAT+AGG | 0.472904 | 5.1:+14947960 | None:intergenic |
| CTACGAACAGATTCCGGTAA+AGG | 0.473028 | 5.1:+14953719 | None:intergenic |
| AGAACTTATGGACGGCCAAA+TGG | 0.473558 | 5.1:-14952287 | MS.gene86545:CDS |
| ACAGGGAACAGATTAAAGAT+TGG | 0.476385 | 5.1:-14945269 | MS.gene86545:CDS |
| TGGAATTACTCGAGATGGGC+TGG | 0.478152 | 5.1:-14953200 | MS.gene86545:CDS |
| TTGTTGGGGCTAAGAGCGTC+AGG | 0.478488 | 5.1:+14947202 | None:intergenic |
| TCAAAGTTGTTGATATTGAA+AGG | 0.484148 | 5.1:-14951142 | MS.gene86545:intron |
| CATAATCAAATAGCCAAGCT+TGG | 0.487009 | 5.1:-14944150 | MS.gene86545:CDS |
| AAATGTGTATCATGGAAATC+AGG | 0.487329 | 5.1:+14947616 | None:intergenic |
| CTTTAGCTCTTCAACTAGAA+GGG | 0.488271 | 5.1:+14944325 | None:intergenic |
| AATACTAAACTTCATTGAAA+AGG | 0.489534 | 5.1:-14949202 | MS.gene86545:CDS |
| TTGCTTACTCCAAAAGCTAT+CGG | 0.489893 | 5.1:+14948197 | None:intergenic |
| GGATGCCAAAGTTCTTCATC+AGG | 0.491605 | 5.1:-14946210 | MS.gene86545:CDS |
| CATATAAGTGGCTTTGTTGG+AGG | 0.492033 | 5.1:+14949045 | None:intergenic |
| GATAACAATGATTTATTGCA+AGG | 0.492434 | 5.1:-14948495 | MS.gene86545:CDS |
| CTTGTTCATCAGTCCAAGCT+TGG | 0.495904 | 5.1:+14944137 | None:intergenic |
| CCTCGATGCTCGCGCTACAA+AGG | 0.496323 | 5.1:-14953630 | MS.gene86545:intron |
| ACCTGCTTTGGCTGAAATGG+TGG | 0.497376 | 5.1:+14948991 | None:intergenic |
| GAATTGGTGGGAGAAAGATA+TGG | 0.497867 | 5.1:-14953178 | MS.gene86545:intron |
| TCGAGATGGGCTGGAATTGG+TGG | 0.499643 | 5.1:-14953191 | MS.gene86545:CDS |
| CCACTGTCACTTGTAACCAC+TGG | 0.501918 | 5.1:-14951009 | MS.gene86545:CDS |
| AGGGTCGGATGCTAGACCGC+TGG | 0.502251 | 5.1:+14947363 | None:intergenic |
| ATCATAGAACTAATGTGAAA+CGG | 0.504755 | 5.1:-14947066 | MS.gene86545:intron |
| AACTTGAGGTGCATGGATCC+TGG | 0.505219 | 5.1:+14947710 | None:intergenic |
| ATCGGTTATCAAACTCTGAA+TGG | 0.506997 | 5.1:-14947990 | MS.gene86545:CDS |
| GTAACTTTGGTTCTGATGAT+CGG | 0.510715 | 5.1:-14948008 | MS.gene86545:CDS |
| CTCCTGTTCAGCATCTAGAT+AGG | 0.511106 | 5.1:+14945418 | None:intergenic |
| GGAGGTGGAATTACTCGAGA+TGG | 0.511633 | 5.1:-14953205 | MS.gene86545:CDS |
| AACAGATTAAAGATTGGGGC+TGG | 0.512814 | 5.1:-14945263 | MS.gene86545:CDS |
| CCAATAGATCTTCATTGTTG+GGG | 0.514398 | 5.1:+14947188 | None:intergenic |
| TTGAAGGTTATGAGTGCCAT+GGG | 0.514841 | 5.1:-14948344 | MS.gene86545:CDS |
| CAACTCCCAGTTCGTTTGCA+AGG | 0.515346 | 5.1:-14950618 | MS.gene86545:CDS |
| CTGTGAGATATACCTTCTAA+AGG | 0.516124 | 5.1:+14945209 | None:intergenic |
| GTTTGGAAGCCAAGATCGTA+AGG | 0.516892 | 5.1:-14948760 | MS.gene86545:CDS |
| TACTTAAAAGTAGTTGATGA+TGG | 0.517169 | 5.1:-14953485 | MS.gene86545:intron |
| GGGTGCAAGTGTATATATCT+TGG | 0.517916 | 5.1:-14952155 | MS.gene86545:CDS |
| GCTCAAAACATATAAAGAGC+GGG | 0.517968 | 5.1:+14950457 | None:intergenic |
| TTGCAATACCCTGGATATGA+AGG | 0.518092 | 5.1:-14950902 | MS.gene86545:intron |
| AAACCTAGAAGTTTGGAAGC+AGG | 0.519365 | 5.1:+14947343 | None:intergenic |
| TGCAACTTCTACACAGGGAC+GGG | 0.520833 | 5.1:+14948131 | None:intergenic |
| GGTTATGATGTAGAGATTGG+TGG | 0.521108 | 5.1:-14948318 | MS.gene86545:CDS |
| ACATTGAACTCACCCCTGAA+TGG | 0.521481 | 5.1:+14946959 | None:intergenic |
| TATTCTACAACCAACCAGTT+CGG | 0.522442 | 5.1:-14951382 | MS.gene86545:CDS |
| ACTGGAAGACTTGCGTCAAA+AGG | 0.523475 | 5.1:-14945541 | MS.gene86545:intron |
| AACTCCCAGTTCGTTTGCAA+GGG | 0.524126 | 5.1:-14950617 | MS.gene86545:CDS |
| AGTAGTTGATAACCAATCTC+TGG | 0.524732 | 5.1:+14945300 | None:intergenic |
| TTCGGTTATGATGTAGAGAT+TGG | 0.525279 | 5.1:-14948321 | MS.gene86545:CDS |
| TGTAACCACTGGCTTTGGGG+TGG | 0.527919 | 5.1:-14950998 | MS.gene86545:CDS |
| GAAGAACTTCTCGCATAAGA+AGG | 0.530402 | 5.1:+14948417 | None:intergenic |
| CAACATTATAAAAGGCGAAA+GGG | 0.532410 | 5.1:-14947518 | MS.gene86545:CDS |
| TGGCATTGATGATGATAGAA+AGG | 0.533656 | 5.1:-14952135 | MS.gene86545:CDS |
| GGGTCGGATGCTAGACCGCT+GGG | 0.537874 | 5.1:+14947364 | None:intergenic |
| TCCACTATTTGCAAAACTTG+AGG | 0.543285 | 5.1:+14947696 | None:intergenic |
| AAATTAAATGAAGAAGATGC+TGG | 0.543458 | 5.1:-14948384 | MS.gene86545:CDS |
| ATGGATACAGAGATACTGTA+AGG | 0.543591 | 5.1:+14950760 | None:intergenic |
| GCCACCATTTCAGCCAAAGC+AGG | 0.544008 | 5.1:-14948992 | MS.gene86545:intron |
| TCAACAAAATGATCCATTCA+GGG | 0.544139 | 5.1:-14946972 | MS.gene86545:CDS |
| TGTTTCAGAATTGATATCTA+GGG | 0.546621 | 5.1:-14946536 | MS.gene86545:intron |
| CCATTTAGTCCCATAATCTC+CGG | 0.546747 | 5.1:+14946501 | None:intergenic |
| TTTGCAAAACTTGAGGTGCA+TGG | 0.547477 | 5.1:+14947703 | None:intergenic |
| ACTTGTAACCACTGGCTTTG+GGG | 0.548380 | 5.1:-14951001 | MS.gene86545:CDS |
| TCTAGATGCTGAACAGGAGC+TGG | 0.549469 | 5.1:-14945414 | MS.gene86545:intron |
| AAATTCATTCCAATCATGGC+TGG | 0.550857 | 5.1:-14946179 | MS.gene86545:CDS |
| ATCATCAACAATGCCACCCT+CGG | 0.553332 | 5.1:-14944602 | MS.gene86545:CDS |
| GTGATCTGTGAATCATTTGA+AGG | 0.554622 | 5.1:-14948360 | MS.gene86545:CDS |
| GGTATTATCTGGAGAAGCAA+AGG | 0.556103 | 5.1:-14945447 | MS.gene86545:CDS |
| GGAGGCCATCTTCGTCAGAC+CGG | 0.556644 | 5.1:-14948600 | MS.gene86545:CDS |
| AAACGGAGTTCAGAGGTTCT+GGG | 0.556723 | 5.1:-14947049 | MS.gene86545:CDS |
| AACCTAGAAGTTTGGAAGCA+GGG | 0.559255 | 5.1:+14947344 | None:intergenic |
| ATCAGGTCCTTGCAATACCC+TGG | 0.559752 | 5.1:-14950911 | MS.gene86545:CDS |
| AGCTCAAGTAACAAGTGGCA+TGG | 0.560858 | 5.1:-14944114 | MS.gene86545:CDS |
| TGTTCCTTTAGTCAACTTGG+AGG | 0.562952 | 5.1:-14944178 | MS.gene86545:CDS |
| AGATTGACACCTAAAATACA+TGG | 0.563124 | 5.1:+14944776 | None:intergenic |
| TTAAGGTGCGATTATGTTTG+GGG | 0.564590 | 5.1:-14944372 | MS.gene86545:intron |
| GTTATGATGTAGAGATTGGT+GGG | 0.564818 | 5.1:-14948317 | MS.gene86545:CDS |
| TTTGGAGTAAGCAAAACCTA+GGG | 0.566038 | 5.1:-14948188 | MS.gene86545:CDS |
| ATGACGCTGCTGAGATTGAA+GGG | 0.566125 | 5.1:-14947012 | MS.gene86545:CDS |
| AATAACCGGTCTGACGAAGA+TGG | 0.566285 | 5.1:+14948595 | None:intergenic |
| GATGATGATAGAAAGGAAGT+AGG | 0.569154 | 5.1:-14952128 | MS.gene86545:CDS |
| TTTGAAGGTTATGAGTGCCA+TGG | 0.569684 | 5.1:-14948345 | MS.gene86545:CDS |
| AGTGCCTCCAAGTTGACTAA+AGG | 0.574131 | 5.1:+14944174 | None:intergenic |
| TTGCAACTTCTACACAGGGA+CGG | 0.575314 | 5.1:+14948130 | None:intergenic |
| AAGAGTTGCTCTACACAAAG+AGG | 0.577971 | 5.1:-14948273 | MS.gene86545:CDS |
| GACAACATAACTGGAGTTTG+AGG | 0.579541 | 5.1:+14946466 | None:intergenic |
| GGAGGAAACAAATCCAATCC+AGG | 0.580368 | 5.1:-14951361 | MS.gene86545:intron |
| TTGATTGAAGTACCTTATTG+GGG | 0.583424 | 5.1:+14951213 | None:intergenic |
| CTTCTACTTCTATGAAATGG+AGG | 0.585489 | 5.1:+14947433 | None:intergenic |
| AGGTCCCTTGCAAACGAACT+GGG | 0.587913 | 5.1:+14950613 | None:intergenic |
| AATGACAATCGCTCTTGTTG+CGG | 0.589049 | 5.1:-14944904 | MS.gene86545:intron |
| GAGGTGGAATTACTCGAGAT+GGG | 0.591799 | 5.1:-14953204 | MS.gene86545:CDS |
| CCAACATTATAAAAGGCGAA+AGG | 0.592678 | 5.1:-14947519 | MS.gene86545:CDS |
| TAGAAGTTTGGAAGCAGGGT+CGG | 0.592890 | 5.1:+14947348 | None:intergenic |
| ATTTCTTACTGATAGTATCA+GGG | 0.593444 | 5.1:+14946240 | None:intergenic |
| TTTGTTTCCTCCGAACTGGT+TGG | 0.594493 | 5.1:+14951372 | None:intergenic |
| TTGACTAAAGGAACAGTGGT+TGG | 0.596025 | 5.1:+14944186 | None:intergenic |
| CGAGATGGGCTGGAATTGGT+GGG | 0.596864 | 5.1:-14953190 | MS.gene86545:CDS |
| GAGCATCTAGATGCAGTACA+AGG | 0.601266 | 5.1:-14947801 | MS.gene86545:CDS |
| AACGGAGTTCAGAGGTTCTG+GGG | 0.602590 | 5.1:-14947048 | MS.gene86545:CDS |
| ATAATCTCACCTGGAAACAG+AGG | 0.602946 | 5.1:+14944294 | None:intergenic |
| ACTTCAGTTATGACATGTCA+AGG | 0.604592 | 5.1:-14947741 | MS.gene86545:CDS |
| ATGAATCACCTTCATATCCA+GGG | 0.605531 | 5.1:+14950894 | None:intergenic |
| TTCAAGATATATGCAGGGCA+TGG | 0.607221 | 5.1:+14950491 | None:intergenic |
| TGGAGACGAAAGAATCAGAC+TGG | 0.608130 | 5.1:-14945559 | MS.gene86545:CDS |
| GACCTGATCAATAACAGCAA+GGG | 0.609846 | 5.1:+14946151 | None:intergenic |
| CTCAAAACATATAAAGAGCG+GGG | 0.609938 | 5.1:+14950458 | None:intergenic |
| GGTTTGAGCATCGTAACTCG+TGG | 0.611142 | 5.1:-14950559 | MS.gene86545:CDS |
| TGCCAAAGTTCTTCATCAGG+TGG | 0.611303 | 5.1:-14946207 | MS.gene86545:CDS |
| ACTAGAAGGGAGCATTCTGA+TGG | 0.612665 | 5.1:+14944338 | None:intergenic |
| CTGTTGATTACTTACATCGA+GGG | 0.615245 | 5.1:-14948653 | MS.gene86545:CDS |
| CTGAATACCATGAATCTAGA+GGG | 0.615850 | 5.1:+14948043 | None:intergenic |
| CGACTTCACAAGAATCGTTG+AGG | 0.618882 | 5.1:-14953669 | MS.gene86545:CDS |
| GGAGTAAGCAAAACCTAGGG+GGG | 0.619378 | 5.1:-14948185 | MS.gene86545:CDS |
| CTACATCATAACCGAACCCA+TGG | 0.620434 | 5.1:+14948328 | None:intergenic |
| GCTGAATACCATGAATCTAG+AGG | 0.621627 | 5.1:+14948042 | None:intergenic |
| TAATCTCACCTGGAAACAGA+GGG | 0.622362 | 5.1:+14944295 | None:intergenic |
| TGTCTGAAGTGGAAAAGAAG+AGG | 0.623855 | 5.1:+14948727 | None:intergenic |
| CAATCAAGAAATGTGTGATG+CGG | 0.624369 | 5.1:-14951193 | MS.gene86545:CDS |
| TTTAGGAGTCGTACAACCGA+GGG | 0.628386 | 5.1:+14944586 | None:intergenic |
| AGCTCAAAACATATAAAGAG+CGG | 0.628689 | 5.1:+14950456 | None:intergenic |
| TCAACTACTTCATAGTTACA+GGG | 0.628877 | 5.1:-14945286 | MS.gene86545:CDS |
| CTAAATTCAAAATCGTGCAG+AGG | 0.632682 | 5.1:-14944568 | MS.gene86545:intron |
| TCATTGTGCAGTGTGCTCAT+GGG | 0.633237 | 5.1:-14944212 | MS.gene86545:intron |
| CATTTCATAGAAGTAGAAGG+AGG | 0.633795 | 5.1:-14947429 | MS.gene86545:CDS |
| TTCATATCCAGGGTATTGCA+AGG | 0.634101 | 5.1:+14950904 | None:intergenic |
| TGGAGTAAGCAAAACCTAGG+GGG | 0.636676 | 5.1:-14948186 | MS.gene86545:CDS |
| CAATGCAGTAGCTCGAGATG+AGG | 0.637844 | 5.1:+14947948 | None:intergenic |
| TAATGTGAAACGGAGTTCAG+AGG | 0.639049 | 5.1:-14947056 | MS.gene86545:CDS |
| ACAAGAGCTCAAGTAACAAG+TGG | 0.645352 | 5.1:-14944119 | MS.gene86545:CDS |
| TGACAATCATCAGTGCTACA+GGG | 0.650522 | 5.1:-14948691 | MS.gene86545:CDS |
| AGGGAACAGATTAAAGATTG+GGG | 0.650828 | 5.1:-14945267 | MS.gene86545:CDS |
| ATTTAGGAGTCGTACAACCG+AGG | 0.651899 | 5.1:+14944585 | None:intergenic |
| GACCTCCACCCCAAAGCCAG+TGG | 0.655193 | 5.1:+14950993 | None:intergenic |
| TAATGACAAGAACTTATGGA+CGG | 0.657018 | 5.1:-14952295 | MS.gene86545:CDS |
| TTAAATTCAAGATATATGCA+GGG | 0.659067 | 5.1:+14950486 | None:intergenic |
| AGACCTGATCAATAACAGCA+AGG | 0.659668 | 5.1:+14946150 | None:intergenic |
| GAGTAAGCAAAACCTAGGGG+GGG | 0.660417 | 5.1:-14948184 | MS.gene86545:CDS |
| AGGAGTCGTACAACCGAGGG+TGG | 0.660860 | 5.1:+14944589 | None:intergenic |
| CAACAAAATGATCCATTCAG+GGG | 0.663093 | 5.1:-14946971 | MS.gene86545:intron |
| GAGATTATGGGACTAAATGG+AGG | 0.664788 | 5.1:-14946498 | MS.gene86545:CDS |
| AAAGAGAAACAAAATAAGGG+AGG | 0.666982 | 5.1:-14948618 | MS.gene86545:CDS |
| CCAGTGGTTACAAGTGACAG+TGG | 0.669527 | 5.1:+14951009 | None:intergenic |
| TCTACAACCAACCAGTTCGG+AGG | 0.673318 | 5.1:-14951379 | MS.gene86545:CDS |
| ACGGAGTTCAGAGGTTCTGG+GGG | 0.673977 | 5.1:-14947047 | MS.gene86545:CDS |
| CTTCAGCTAGCTGATACTGA+CGG | 0.676315 | 5.1:-14944625 | MS.gene86545:intron |
| CAAGTTGACTAAAGGAACAG+TGG | 0.677062 | 5.1:+14944182 | None:intergenic |
| TGGGAGAGAAGCATAGCTTG+TGG | 0.677167 | 5.1:-14949165 | MS.gene86545:intron |
| AATGCTACGAGTGAAAACTT+CGG | 0.679690 | 5.1:-14952368 | MS.gene86545:CDS |
| TCTGTTGATTACTTACATCG+AGG | 0.679989 | 5.1:-14948654 | MS.gene86545:CDS |
| TCAAAACATATAAAGAGCGG+GGG | 0.683425 | 5.1:+14950459 | None:intergenic |
| TTGGAGTAAGCAAAACCTAG+GGG | 0.687311 | 5.1:-14948187 | MS.gene86545:CDS |
| GAAGAACTTTGGCATCCTCG+AGG | 0.706267 | 5.1:+14946216 | None:intergenic |
| TATGCGAGAAGTTCTTCACG+TGG | 0.708464 | 5.1:-14948411 | MS.gene86545:CDS |
| TCGATGTAAGTAATCAACAG+AGG | 0.724205 | 5.1:+14948656 | None:intergenic |
| TTGGGGCTAAGAGCGTCAGG+AGG | 0.725154 | 5.1:+14947205 | None:intergenic |
| CAATCATCAGTGCTACAGGG+AGG | 0.729888 | 5.1:-14948688 | MS.gene86545:CDS |
| CCTTTGTAGCGCGAGCATCG+AGG | 0.736933 | 5.1:+14953630 | None:intergenic |
| ATGGTAGCTAAAAGACCCAG+CGG | 0.738543 | 5.1:-14947379 | MS.gene86545:CDS |
| TATCAGTAAGAAATGCCTCG+AGG | 0.751021 | 5.1:-14946231 | MS.gene86545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 14944050 | 14953756 | 14944050 | ID=MS.gene86545 |
| chr5.1 | mRNA | 14944050 | 14953756 | 14944050 | ID=MS.gene86545.t1;Parent=MS.gene86545 |
| chr5.1 | exon | 14953631 | 14953756 | 14953631 | ID=MS.gene86545.t1.exon1;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14953631 | 14953756 | 14953631 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14953486 | 14953537 | 14953486 | ID=MS.gene86545.t1.exon2;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14953486 | 14953537 | 14953486 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14953179 | 14953226 | 14953179 | ID=MS.gene86545.t1.exon3;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14953179 | 14953226 | 14953179 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14952268 | 14952422 | 14952268 | ID=MS.gene86545.t1.exon4;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14952268 | 14952422 | 14952268 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14952120 | 14952177 | 14952120 | ID=MS.gene86545.t1.exon5;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14952120 | 14952177 | 14952120 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14951362 | 14951419 | 14951362 | ID=MS.gene86545.t1.exon6;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14951362 | 14951419 | 14951362 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14951143 | 14951235 | 14951143 | ID=MS.gene86545.t1.exon7;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14951143 | 14951235 | 14951143 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14950903 | 14951068 | 14950903 | ID=MS.gene86545.t1.exon8;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14950903 | 14951068 | 14950903 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14950768 | 14950783 | 14950768 | ID=MS.gene86545.t1.exon9;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14950768 | 14950783 | 14950768 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14950424 | 14950644 | 14950424 | ID=MS.gene86545.t1.exon10;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14950424 | 14950644 | 14950424 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14949166 | 14949235 | 14949166 | ID=MS.gene86545.t1.exon11;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14949166 | 14949235 | 14949166 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14948993 | 14949073 | 14948993 | ID=MS.gene86545.t1.exon12;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14948993 | 14949073 | 14948993 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14947347 | 14948792 | 14947347 | ID=MS.gene86545.t1.exon13;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14947347 | 14948792 | 14947347 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14947178 | 14947256 | 14947178 | ID=MS.gene86545.t1.exon14;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14947178 | 14947256 | 14947178 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14946972 | 14947081 | 14946972 | ID=MS.gene86545.t1.exon15;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14946972 | 14947081 | 14946972 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14946477 | 14946550 | 14946477 | ID=MS.gene86545.t1.exon16;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14946477 | 14946550 | 14946477 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14946154 | 14946348 | 14946154 | ID=MS.gene86545.t1.exon17;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14946154 | 14946348 | 14946154 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14945542 | 14945586 | 14945542 | ID=MS.gene86545.t1.exon18;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14945542 | 14945586 | 14945542 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14945415 | 14945468 | 14945415 | ID=MS.gene86545.t1.exon19;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14945415 | 14945468 | 14945415 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14945222 | 14945328 | 14945222 | ID=MS.gene86545.t1.exon20;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14945222 | 14945328 | 14945222 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14944905 | 14944953 | 14944905 | ID=MS.gene86545.t1.exon21;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14944905 | 14944953 | 14944905 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14944742 | 14944801 | 14944742 | ID=MS.gene86545.t1.exon22;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14944742 | 14944801 | 14944742 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14944569 | 14944641 | 14944569 | ID=MS.gene86545.t1.exon23;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14944569 | 14944641 | 14944569 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14944304 | 14944389 | 14944304 | ID=MS.gene86545.t1.exon24;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14944304 | 14944389 | 14944304 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| chr5.1 | exon | 14944050 | 14944223 | 14944050 | ID=MS.gene86545.t1.exon25;Parent=MS.gene86545.t1 |
| chr5.1 | CDS | 14944050 | 14944223 | 14944050 | ID=cds.MS.gene86545.t1;Parent=MS.gene86545.t1 |
| Gene Sequence |
| Protein sequence |
