Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058795.t1 | XP_003598062.2 | 98.1 | 719 | 14 | 0 | 1 | 719 | 1 | 719 | 0.00E+00 | 1387.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058795.t1 | Q9ZRV4 | 70.7 | 716 | 206 | 1 | 4 | 719 | 26 | 737 | 7.9e-294 | 1010.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058795.t1 | G7J070 | 98.1 | 719 | 14 | 0 | 1 | 719 | 1 | 719 | 0.0e+00 | 1387.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058794 | MS.gene058795 | 0.843425 | 1.41E-58 | -1.69E-46 |
| MS.gene058795 | MS.gene52850 | 0.856941 | 2.29E-62 | -1.69E-46 |
| MS.gene058795 | MS.gene96593 | 0.803515 | 3.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044567 | MS.gene058795 | PPI |
| MS.gene04418 | MS.gene058795 | PPI |
| MS.gene20720 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene050408 | PPI |
| MS.gene40912 | MS.gene058795 | PPI |
| MS.gene86545 | MS.gene058795 | PPI |
| MS.gene05640 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene072703 | PPI |
| MS.gene049266 | MS.gene058795 | PPI |
| MS.gene07047 | MS.gene058795 | PPI |
| MS.gene035194 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene96949 | PPI |
| MS.gene058795 | MS.gene65331 | PPI |
| MS.gene058795 | MS.gene07203 | PPI |
| MS.gene04079 | MS.gene058795 | PPI |
| MS.gene005611 | MS.gene058795 | PPI |
| MS.gene08109 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene038750 | PPI |
| MS.gene060573 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene28806 | PPI |
| MS.gene058795 | MS.gene64888 | PPI |
| MS.gene06380 | MS.gene058795 | PPI |
| MS.gene23437 | MS.gene058795 | PPI |
| MS.gene72658 | MS.gene058795 | PPI |
| MS.gene013296 | MS.gene058795 | PPI |
| MS.gene058795 | MS.gene018651 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058795.t1 | MTR_3g005810 | 98.053 | 719 | 14 | 0 | 1 | 719 | 1 | 719 | 0.0 | 1471 |
| MS.gene058795.t1 | MTR_1g088720 | 30.240 | 334 | 221 | 8 | 7 | 333 | 8 | 336 | 2.87e-35 | 144 |
| MS.gene058795.t1 | MTR_5g024250 | 30.147 | 272 | 170 | 8 | 7 | 269 | 4 | 264 | 2.91e-20 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene058795.t1 | AT4G09140 | 70.670 | 716 | 206 | 1 | 4 | 719 | 26 | 737 | 0.0 | 1055 |
| MS.gene058795.t1 | AT4G09140 | 66.014 | 562 | 187 | 1 | 158 | 719 | 1 | 558 | 0.0 | 772 |
| MS.gene058795.t1 | AT4G02460 | 30.499 | 341 | 225 | 7 | 7 | 340 | 17 | 352 | 5.33e-37 | 149 |
| MS.gene058795.t1 | AT4G02460 | 30.499 | 341 | 225 | 7 | 7 | 340 | 17 | 352 | 6.44e-37 | 149 |
| MS.gene058795.t1 | AT4G35520 | 29.044 | 272 | 171 | 8 | 7 | 269 | 4 | 262 | 5.25e-22 | 102 |
| MS.gene058795.t1 | AT4G35520 | 29.044 | 272 | 171 | 8 | 7 | 269 | 4 | 262 | 5.27e-22 | 102 |
| MS.gene058795.t1 | AT4G35520 | 30.081 | 246 | 156 | 6 | 7 | 243 | 4 | 242 | 8.14e-20 | 95.1 |
| MS.gene058795.t1 | AT4G35520 | 30.081 | 246 | 156 | 6 | 7 | 243 | 4 | 242 | 8.52e-20 | 95.1 |
| MS.gene058795.t1 | AT4G35520 | 30.081 | 246 | 156 | 6 | 7 | 243 | 4 | 242 | 8.53e-20 | 95.1 |
| MS.gene058795.t1 | AT4G35520 | 30.081 | 246 | 156 | 6 | 7 | 243 | 4 | 242 | 1.10e-19 | 94.7 |
| MS.gene058795.t1 | AT4G02460 | 24.900 | 249 | 175 | 7 | 99 | 340 | 11 | 254 | 3.24e-13 | 73.6 |
| MS.gene058795.t1 | AT4G02460 | 24.900 | 249 | 175 | 7 | 99 | 340 | 11 | 254 | 3.27e-13 | 73.9 |
Find 146 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGCTAGGCGTTGGATTT+TGG | 0.110433 | 3.3:+1535775 | None:intergenic |
| GTCTTTGATTGTAAGGTTTA+TGG | 0.202761 | 3.3:+1535655 | None:intergenic |
| CCTGAGTTTGTGCTTAGTTT+AGG | 0.245169 | 3.3:-1527195 | MS.gene058795:CDS |
| CTGAGTTTGTGCTTAGTTTA+GGG | 0.247718 | 3.3:-1527194 | MS.gene058795:CDS |
| GTTCTAACCAACTTATTTAC+TGG | 0.258224 | 3.3:+1530598 | None:intergenic |
| TTTCAAACCACCTCCTTCTA+TGG | 0.261404 | 3.3:-1525241 | MS.gene058795:CDS |
| TTCGAAGTTGTCTGCGTTTG+AGG | 0.262755 | 3.3:-1535546 | MS.gene058795:CDS |
| TTTGCAGAGGATTACGTCTA+TGG | 0.281439 | 3.3:-1535522 | MS.gene058795:CDS |
| ACAATTGAAATATATATAAA+AGG | 0.283295 | 3.3:+1532225 | None:intergenic |
| GGTATGCTGGAGGAGTATTT+TGG | 0.292415 | 3.3:-1527297 | MS.gene058795:CDS |
| GATGCCATCAGAACAGTTTA+TGG | 0.295437 | 3.3:-1532949 | MS.gene058795:CDS |
| CGTGAAAGACTTGATTATAT+TGG | 0.303621 | 3.3:-1528339 | MS.gene058795:CDS |
| AAGGCCAATTGCATGGTTAC+AGG | 0.305312 | 3.3:-1535433 | MS.gene058795:intron |
| AGGCCCTGTGCTGCTGTAAA+AGG | 0.310412 | 3.3:-1533786 | MS.gene058795:CDS |
| ATAAAAGGCTTAGATGCTTT+AGG | 0.329580 | 3.3:+1532240 | None:intergenic |
| TGAGAATCTATTCTATAATA+TGG | 0.337500 | 3.3:-1533260 | MS.gene058795:CDS |
| TGGCATTCATATTGATGATC+AGG | 0.346186 | 3.3:-1527277 | MS.gene058795:CDS |
| TCAAACAGTTTCAGCTGCTC+TGG | 0.349043 | 3.3:-1526778 | MS.gene058795:CDS |
| GTTCGTACCTCTCTCTTTGT+TGG | 0.351550 | 3.3:+1532168 | None:intergenic |
| CAGCAAGTTCTCAGCCGTTT+TGG | 0.360552 | 3.3:-1528398 | MS.gene058795:CDS |
| GACCGCCGTCTTTGATTGTA+AGG | 0.364499 | 3.3:+1535648 | None:intergenic |
| TGTAAAAGGAACACAGATAA+TGG | 0.367128 | 3.3:-1533772 | MS.gene058795:intron |
| TTGAAATGTACGTGCATCAT+TGG | 0.368233 | 3.3:+1531569 | None:intergenic |
| TGATAACTTCCTGATTTAAG+AGG | 0.384335 | 3.3:+1531634 | None:intergenic |
| TGAGTTCTATAGAATCTTGT+AGG | 0.400669 | 3.3:+1529471 | None:intergenic |
| ATTACGTCTATGGGGTTTAG+AGG | 0.400674 | 3.3:-1535512 | MS.gene058795:CDS |
| CCTCCTTCTATGGCTACTAA+TGG | 0.417391 | 3.3:-1525231 | MS.gene058795:CDS |
| ATGCCATCAGAACAGTTTAT+GGG | 0.417980 | 3.3:-1532948 | MS.gene058795:CDS |
| TTACTTCGCCGGCGGCGATT+CGG | 0.429131 | 3.3:+1535741 | None:intergenic |
| CTAACCTGTAACCATGCAAT+TGG | 0.429908 | 3.3:+1535429 | None:intergenic |
| CTCCATGACACCATCTCTAT+AGG | 0.431084 | 3.3:+1533818 | None:intergenic |
| ATAGGTGAGCCTCTTAAATC+AGG | 0.431743 | 3.3:-1531643 | MS.gene058795:intron |
| TACTAATGGAACCTTTGTTA+AGG | 0.435371 | 3.3:-1525217 | MS.gene058795:intron |
| CAATCCCTCACCAGATGGAT+TGG | 0.436586 | 3.3:+1526722 | None:intergenic |
| TTTATGTTTCTCAGATAGAC+TGG | 0.439450 | 3.3:-1532316 | MS.gene058795:intron |
| TTTACAGCAGCACAGGGCCT+AGG | 0.449578 | 3.3:+1533789 | None:intergenic |
| CGACTGATTCCGCTAGGCGT+TGG | 0.453854 | 3.3:+1535768 | None:intergenic |
| GAAAACAAAGGCTGGTATGC+TGG | 0.453883 | 3.3:-1527310 | MS.gene058795:CDS |
| GAAGACACTACAAAATTCTT+CGG | 0.456465 | 3.3:-1533227 | MS.gene058795:CDS |
| GTTCCATTAGTAGCCATAGA+AGG | 0.456923 | 3.3:+1525228 | None:intergenic |
| TTGCATGGGCCCAGCGTGAA+TGG | 0.464113 | 3.3:-1525302 | MS.gene058795:CDS |
| CATCTATCCTGTAGGAATGA+TGG | 0.469466 | 3.3:-1528755 | MS.gene058795:intron |
| TTTCTGAAGCTGAGATTGCA+TGG | 0.470561 | 3.3:-1525317 | MS.gene058795:CDS |
| TTAGCTGAATGGCATTGAAA+TGG | 0.472900 | 3.3:+1528375 | None:intergenic |
| CCGATGTTGCCCAATCCATC+TGG | 0.474634 | 3.3:-1526732 | MS.gene058795:CDS |
| TTCCCATACCCGGTGGGGTA+GGG | 0.475091 | 3.3:+1530728 | None:intergenic |
| GGCATTCATATTGATGATCA+GGG | 0.480584 | 3.3:-1527276 | MS.gene058795:CDS |
| AATATAATCAAGTCTTTCAC+GGG | 0.482818 | 3.3:+1528341 | None:intergenic |
| TCAGGGATGCGATCCATGTC+CGG | 0.485690 | 3.3:+1527213 | None:intergenic |
| TACCCGGTGGGGTAGGGCTG+AGG | 0.486411 | 3.3:+1530734 | None:intergenic |
| TTCTGAAGCTGAGATTGCAT+GGG | 0.487761 | 3.3:-1525316 | MS.gene058795:CDS |
| CCTAAACTAAGCACAAACTC+AGG | 0.490379 | 3.3:+1527195 | None:intergenic |
| CTTGATTATATTGGCACTGA+AGG | 0.492658 | 3.3:-1528330 | MS.gene058795:CDS |
| TTGCAGAGGATTACGTCTAT+GGG | 0.495592 | 3.3:-1535521 | MS.gene058795:CDS |
| TCATACTTGTGGCAGACAGC+TGG | 0.499733 | 3.3:-1530799 | MS.gene058795:intron |
| TGGCATTGAAATGGCCAAAA+CGG | 0.505388 | 3.3:+1528384 | None:intergenic |
| GAGAATGCCTGTGATAATAC+TGG | 0.506862 | 3.3:-1526657 | MS.gene058795:intron |
| TAGAGATGGTGTCATGGAGC+AGG | 0.507145 | 3.3:-1533814 | MS.gene058795:CDS |
| CAATATAATCAAGTCTTTCA+CGG | 0.507914 | 3.3:+1528340 | None:intergenic |
| CAAACAGTTTCAGCTGCTCT+GGG | 0.509172 | 3.3:-1526777 | MS.gene058795:CDS |
| TGTCAATTTCTCTTGCAGAA+AGG | 0.511158 | 3.3:-1533149 | MS.gene058795:intron |
| GGCTGGATCACTTAGCTGAA+TGG | 0.514732 | 3.3:+1528364 | None:intergenic |
| GTATGCCGTTCACACAAAAT+CGG | 0.514882 | 3.3:+1535572 | None:intergenic |
| ACTGTTACTACTATTACTAA+AGG | 0.515263 | 3.3:-1535452 | MS.gene058795:CDS |
| AATCCCTCACCAGATGGATT+GGG | 0.516217 | 3.3:+1526723 | None:intergenic |
| TGGGCGTTGGATTACTTCGC+CGG | 0.519195 | 3.3:+1535730 | None:intergenic |
| ATTGACATTGGTATGATGTA+TGG | 0.519238 | 3.3:+1533165 | None:intergenic |
| GGATGATTACTCAAAGATAG+TGG | 0.524793 | 3.3:-1533206 | MS.gene058795:CDS |
| GAAAGTGCCAGTAAATAAGT+TGG | 0.524800 | 3.3:-1530605 | MS.gene058795:CDS |
| TTGCAAATGTTGTAAACTTG+AGG | 0.530370 | 3.3:-1528654 | MS.gene058795:intron |
| TTTCCCATACCCGGTGGGGT+AGG | 0.533882 | 3.3:+1530727 | None:intergenic |
| GATCCATGTCCGGAGTATAC+TGG | 0.534406 | 3.3:+1527223 | None:intergenic |
| ATCAATAACAACTATGACCC+TGG | 0.540120 | 3.3:-1529422 | MS.gene058795:intron |
| GTCGTCAACCGAATCGCCGC+CGG | 0.544875 | 3.3:-1535749 | MS.gene058795:CDS |
| TAACCTCAGCCCTACCCCAC+CGG | 0.548727 | 3.3:-1530737 | MS.gene058795:CDS |
| TTGTATTGACCATTCACGCT+GGG | 0.551512 | 3.3:+1525293 | None:intergenic |
| TATATTGGCACTGAAGGAAG+AGG | 0.554059 | 3.3:-1528324 | MS.gene058795:CDS |
| TAGGCGTGTAATCTGCCTGC+AGG | 0.557560 | 3.3:+1530562 | None:intergenic |
| ACAGATTCATTAGATCCTGC+AGG | 0.558475 | 3.3:-1530577 | MS.gene058795:CDS |
| TATCATTGAGAAGATACAAT+CGG | 0.558745 | 3.3:-1531616 | MS.gene058795:CDS |
| CAAGTCTCCGACGACGGTCA+CGG | 0.563967 | 3.3:-1535614 | MS.gene058795:CDS |
| CTGATTCAAGTCTCCGACGA+CGG | 0.566433 | 3.3:-1535620 | MS.gene058795:CDS |
| CGCAAACATTACCTTAACAA+AGG | 0.567048 | 3.3:+1525206 | None:intergenic |
| GATCTGCTGAAAACAAAGGC+TGG | 0.567731 | 3.3:-1527318 | MS.gene058795:CDS |
| ACATTGACATCAATATTCTC+AGG | 0.568147 | 3.3:+1532195 | None:intergenic |
| TTACGGCGGAGACTGGGCGT+TGG | 0.569135 | 3.3:+1535717 | None:intergenic |
| AAAAGCAATCCCTCACCAGA+TGG | 0.569149 | 3.3:+1526717 | None:intergenic |
| CCAGATGGATTGGGCAACAT+CGG | 0.571394 | 3.3:+1526732 | None:intergenic |
| GTAAAGCACTGCACATATGT+TGG | 0.572709 | 3.3:-1528727 | MS.gene058795:CDS |
| TCTGCAAGAGAAATTGACAT+TGG | 0.573051 | 3.3:+1533153 | None:intergenic |
| GACCCCATAAACTGTTCTGA+TGG | 0.573196 | 3.3:+1532945 | None:intergenic |
| ATTACTAAAGGCCAATTGCA+TGG | 0.575626 | 3.3:-1535440 | MS.gene058795:CDS |
| GTCCATACCAGTATTATCAC+AGG | 0.577956 | 3.3:+1526650 | None:intergenic |
| TCTCAGATAGACTGGTTGAG+TGG | 0.579246 | 3.3:-1532308 | MS.gene058795:intron |
| GTATACTGGTCAAGTATCAC+AGG | 0.580775 | 3.3:+1527237 | None:intergenic |
| AAACATTTCCCATACCCGGT+GGG | 0.580830 | 3.3:+1530722 | None:intergenic |
| AACCTCAGCCCTACCCCACC+GGG | 0.583112 | 3.3:-1530736 | MS.gene058795:intron |
| GTGTCACTTTGAATGCAGTA+AGG | 0.584850 | 3.3:-1530504 | MS.gene058795:intron |
| GGCATCAAGCCTTGATGATG+TGG | 0.587629 | 3.3:+1532966 | None:intergenic |
| CGGTGATTGAATCAACATTG+AGG | 0.588119 | 3.3:-1531596 | MS.gene058795:CDS |
| GATGGATTGGGCAACATCGG+TGG | 0.588877 | 3.3:+1526735 | None:intergenic |
| CTCTCGTACTAATAAGAGCA+AGG | 0.589552 | 3.3:-1530764 | MS.gene058795:CDS |
| GCACTGCACATATGTTGGAA+TGG | 0.589828 | 3.3:-1528722 | MS.gene058795:CDS |
| AACATTTCCCATACCCGGTG+GGG | 0.591924 | 3.3:+1530723 | None:intergenic |
| GCTTGCTAGTATGACTTATG+TGG | 0.595892 | 3.3:-1535483 | MS.gene058795:CDS |
| ATTATCACAGGCATTCTCCA+TGG | 0.601535 | 3.3:+1526662 | None:intergenic |
| GTGTCATGGAGCAGGAACCT+AGG | 0.602402 | 3.3:-1533806 | MS.gene058795:CDS |
| AAGGTTTATGGAAGTTGATG+CGG | 0.604314 | 3.3:+1535667 | None:intergenic |
| CTGCGTTTGAGGATTTGCAG+AGG | 0.605477 | 3.3:-1535535 | MS.gene058795:CDS |
| GGTTGACGACTGATTCCGCT+AGG | 0.605700 | 3.3:+1535762 | None:intergenic |
| TTAGTAGCCATAGAAGGAGG+TGG | 0.606651 | 3.3:+1525234 | None:intergenic |
| CTAAACTAAGCACAAACTCA+GGG | 0.607686 | 3.3:+1527196 | None:intergenic |
| ATCCTATAGAGATGGTGTCA+TGG | 0.613728 | 3.3:-1533820 | MS.gene058795:CDS |
| TTGCCCAATCCATCTGGTGA+GGG | 0.615762 | 3.3:-1526726 | MS.gene058795:CDS |
| AGGTTGATTGGGATGATGAA+AGG | 0.616203 | 3.3:-1526809 | MS.gene058795:CDS |
| ATACAGTAGCCACATCATCA+AGG | 0.617880 | 3.3:-1532975 | MS.gene058795:CDS |
| GCCTACATGCAAGTTATACC+TGG | 0.618767 | 3.3:-1530544 | MS.gene058795:CDS |
| TTTAGGGTATCCTATAGAGA+TGG | 0.620969 | 3.3:-1533828 | MS.gene058795:intron |
| GTTGCCCAATCCATCTGGTG+AGG | 0.621707 | 3.3:-1526727 | MS.gene058795:CDS |
| TCGAATACCGTGACCGTCGT+CGG | 0.623101 | 3.3:+1535607 | None:intergenic |
| CTTGCTCTTATTAGTACGAG+AGG | 0.624813 | 3.3:+1530765 | None:intergenic |
| TATTCTATAATATGGCTGCA+AGG | 0.627616 | 3.3:-1533252 | MS.gene058795:CDS |
| GTTGTATTGACCATTCACGC+TGG | 0.629559 | 3.3:+1525292 | None:intergenic |
| TGACCAGTATACTCCGGACA+TGG | 0.629857 | 3.3:-1527226 | MS.gene058795:CDS |
| AGATAGTGGATGTTGTCAGT+CGG | 0.631946 | 3.3:-1533192 | MS.gene058795:CDS |
| CACAGATCTGCTGAAAACAA+AGG | 0.634034 | 3.3:-1527322 | MS.gene058795:CDS |
| ATAAACCTTACAATCAAAGA+CGG | 0.639285 | 3.3:-1535653 | MS.gene058795:CDS |
| TGCCATCAGAACAGTTTATG+GGG | 0.642839 | 3.3:-1532947 | MS.gene058795:CDS |
| TACATGCAAGTTATACCTGG+TGG | 0.650299 | 3.3:-1530541 | MS.gene058795:CDS |
| TGGAAGTTGATGCGGCGTCG+AGG | 0.655630 | 3.3:+1535675 | None:intergenic |
| ACCAGGTATAACTTGCATGT+AGG | 0.658521 | 3.3:+1530543 | None:intergenic |
| TGCAGAGGATTACGTCTATG+GGG | 0.660337 | 3.3:-1535520 | MS.gene058795:CDS |
| GCTCCTTCGTTGTCTAACTG+AGG | 0.662697 | 3.3:+1529493 | None:intergenic |
| AACAAAGGCTGGTATGCTGG+AGG | 0.667613 | 3.3:-1527307 | MS.gene058795:CDS |
| CCATTAGTAGCCATAGAAGG+AGG | 0.673543 | 3.3:+1525231 | None:intergenic |
| ACCCAAAATCCAACGCCTAG+CGG | 0.675566 | 3.3:-1535777 | MS.gene058795:CDS |
| GATACTTGACCAGTATACTC+CGG | 0.679952 | 3.3:-1527232 | MS.gene058795:CDS |
| TGTGCATCCAACAAAGAGAG+AGG | 0.681638 | 3.3:-1532175 | MS.gene058795:intron |
| TTGACATCAATATTCTCAGG+AGG | 0.686791 | 3.3:+1532198 | None:intergenic |
| ATATAATCAAGTCTTTCACG+GGG | 0.688244 | 3.3:+1528342 | None:intergenic |
| GCGTTGGATTACTTCGCCGG+CGG | 0.693192 | 3.3:+1535733 | None:intergenic |
| GATCCTCAGTTAGACAACGA+AGG | 0.703074 | 3.3:-1529496 | MS.gene058795:CDS |
| AACCTTACAATCAAAGACGG+CGG | 0.709529 | 3.3:-1535650 | MS.gene058795:CDS |
| TGCTGCCAAGAAAATCACGA+TGG | 0.717164 | 3.3:-1532827 | MS.gene058795:CDS |
| TCGTACTAATAAGAGCAAGG+AGG | 0.754469 | 3.3:-1530761 | MS.gene058795:CDS |
| TATAATCAAGTCTTTCACGG+GGG | 0.793097 | 3.3:+1528343 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 1523961 | 1535810 | 1523961 | ID=MS.gene058795 |
| chr3.3 | mRNA | 1523961 | 1535810 | 1523961 | ID=MS.gene058795.t1;Parent=MS.gene058795 |
| chr3.3 | exon | 1535434 | 1535810 | 1535434 | ID=MS.gene058795.t1.exon1;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1535434 | 1535810 | 1535434 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1533773 | 1533845 | 1533773 | ID=MS.gene058795.t1.exon2;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1533773 | 1533845 | 1533773 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1533150 | 1533284 | 1533150 | ID=MS.gene058795.t1.exon3;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1533150 | 1533284 | 1533150 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1532812 | 1533022 | 1532812 | ID=MS.gene058795.t1.exon4;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1532812 | 1533022 | 1532812 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1532176 | 1532324 | 1532176 | ID=MS.gene058795.t1.exon5;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1532176 | 1532324 | 1532176 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1531563 | 1531661 | 1531563 | ID=MS.gene058795.t1.exon6;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1531563 | 1531661 | 1531563 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1530737 | 1530806 | 1530737 | ID=MS.gene058795.t1.exon7;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1530737 | 1530806 | 1530737 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1530505 | 1530640 | 1530505 | ID=MS.gene058795.t1.exon8;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1530505 | 1530640 | 1530505 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1529423 | 1529517 | 1529423 | ID=MS.gene058795.t1.exon9;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1529423 | 1529517 | 1529423 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1528655 | 1528763 | 1528655 | ID=MS.gene058795.t1.exon10;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1528655 | 1528763 | 1528655 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1528271 | 1528436 | 1528271 | ID=MS.gene058795.t1.exon11;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1528271 | 1528436 | 1528271 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1527188 | 1527349 | 1527188 | ID=MS.gene058795.t1.exon12;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1527188 | 1527349 | 1527188 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1526658 | 1526829 | 1526658 | ID=MS.gene058795.t1.exon13;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1526658 | 1526829 | 1526658 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1525218 | 1525378 | 1525218 | ID=MS.gene058795.t1.exon14;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1525218 | 1525378 | 1525218 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| chr3.3 | exon | 1523961 | 1524005 | 1523961 | ID=MS.gene058795.t1.exon15;Parent=MS.gene058795.t1 |
| chr3.3 | CDS | 1523961 | 1524005 | 1523961 | ID=cds.MS.gene058795.t1;Parent=MS.gene058795.t1 |
| Gene Sequence |
| Protein sequence |
