AlfalfaGEDB | MS.gene87076

M. sativa cultivar XinJiangDaYe / MS.gene87076

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87076.t1	XP_003623576.1	99.2	363	3	0	1	363	1	363	9.90E-204	719.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87076.t1	Q9ZQ31	45.2	283	138	5	26	306	117	384	5.4e-65	249.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87076.t1	G7KX34	99.2	363	3	0	1	363	1	363	7.1e-204	719.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051655	MS.gene87076	0.823233	1.55E-53	-1.69E-46
MS.gene051848	MS.gene87076	-0.806267	8.94E-50	-1.69E-46
MS.gene058223	MS.gene87076	-0.816657	4.94E-52	-1.69E-46
MS.gene059224	MS.gene87076	0.80997	1.45E-50	-1.69E-46
MS.gene059283	MS.gene87076	0.80022	1.60E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene036217	MS.gene87076	PPI
MS.gene87076	MS.gene39977	PPI
MS.gene87076	MS.gene32044	PPI
MS.gene87076	MS.gene004666	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87076.t1	MTR_7g072710	99.174	363	3	0	1	363	1	363	0.0	749
MS.gene87076.t1	MTR_7g072710	96.753	308	8	1	58	363	19	326	0.0	617
MS.gene87076.t1	MTR_3g076970	67.550	302	97	1	20	321	1	301	1.73e-152	433
MS.gene87076.t1	MTR_6g004440	57.333	300	89	2	22	321	3	263	1.26e-120	351
MS.gene87076.t1	MTR_5g019700	45.667	300	150	6	19	313	17	308	2.29e-81	254
MS.gene87076.t1	MTR_2g013900	42.759	290	153	5	29	314	145	425	1.24e-78	249
MS.gene87076.t1	MTR_8g100085	45.421	273	138	4	36	306	124	387	1.81e-78	247
MS.gene87076.t1	MTR_4g132860	44.928	276	141	4	36	309	71	337	3.30e-78	245
MS.gene87076.t1	MTR_3g034100	45.091	275	136	5	36	306	73	336	7.19e-78	244
MS.gene87076.t1	MTR_4g088745	39.731	297	160	5	33	319	32	319	6.76e-77	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87076.t1	AT5G01850	81.155	329	56	2	33	360	6	329	0.0	534
MS.gene87076.t1	AT5G01850	75.637	353	56	3	33	360	6	353	0.0	520
MS.gene87076.t1	AT3G27560	65.789	304	101	2	22	325	3	303	3.17e-148	423
MS.gene87076.t1	AT5G40540	68.276	290	89	2	32	319	13	301	7.24e-147	419
MS.gene87076.t1	AT5G50180	66.212	293	97	2	26	317	1	292	4.99e-141	404
MS.gene87076.t1	AT5G40540	66.920	263	83	1	32	290	13	275	1.42e-129	372
MS.gene87076.t1	AT5G40540	72.124	226	60	2	96	319	1	225	9.88e-118	342
MS.gene87076.t1	AT5G40540	71.707	205	55	2	117	319	1	204	1.40e-103	305
MS.gene87076.t1	AT5G66710	52.817	284	130	4	32	314	58	338	1.07e-101	306
MS.gene87076.t1	AT3G50720	44.710	293	152	5	22	310	25	311	7.64e-85	262

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Find 72 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCAGTGAGGTCAAAT+GGG	0.506452	7.4:-31719951	MS.gene87076:CDS
AAAATTGGTGAAGGTGCTCA+TGG	0.527411	7.4:-31719853	MS.gene87076:CDS
AAATTGGACATTCCTTCAAA+AGG	0.479722	7.4:+31718119	None:intergenic
AACAGGAACTTACCGATGGA+TGG	0.590170	7.4:-31718704	MS.gene87076:CDS
AAGCAAACTTTCCTTTGTTC+CGG	0.295037	7.4:+31717369	None:intergenic
AAGGTTGACGTCTATAGCTT+TGG	0.366123	7.4:-31718176	MS.gene87076:CDS
ACATAGAAGTTGTTGAAGAG+AGG	0.489038	7.4:-31719981	MS.gene87076:CDS
ACATGAATGTCTAAAGGATT+AGG	0.416587	7.4:+31719108	None:intergenic
ACCCGACAATGAACCTAAGG+CGG	0.655170	7.4:-31717432	MS.gene87076:CDS
AGAACCCGACAATGAACCTA+AGG	0.598015	7.4:-31717435	MS.gene87076:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTTGATCACGAAGTT+CGG	+	chr7.4:31719462-31719481	None:intergenic	30.0%
AAATTGGACATTCCTTCAAA+AGG	+	chr7.4:31719212-31719231	None:intergenic	30.0%
ACATGAATGTCTAAAGGATT+AGG	+	chr7.4:31718223-31718242	None:intergenic	30.0%
ATAGCTACATGAATGTCTAA+AGG	+	chr7.4:31718229-31718248	None:intergenic	30.0%
ATAGTTACTGATAAGTGGAT+TGG	-	chr7.4:31719347-31719366	MS.gene87076:intron	30.0%
ATGGAAAAGTTTATCAAGGA+AGG	-	chr7.4:31717494-31717513	MS.gene87076:CDS	30.0%
ATTAAACTGTGTATCCAAAC+AGG	-	chr7.4:31717758-31717777	MS.gene87076:intron	30.0%
ATTAAAGATAATCGCTGCAA+TGG	+	chr7.4:31717979-31717998	None:intergenic	30.0%
CCCAAAATATTCCTAATTTG+AGG	+	chr7.4:31719319-31719338	None:intergenic	30.0%
CTGATTGATGAATAAACACT+CGG	+	chr7.4:31719281-31719300	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	31717328	31720022	31717328	ID=MS.gene87076
chr7.4	mRNA	31717328	31720022	31717328	ID=MS.gene87076.t1;Parent=MS.gene87076
chr7.4	exon	31719835	31720022	31719835	ID=MS.gene87076.t1.exon1;Parent=MS.gene87076.t1
chr7.4	CDS	31719835	31720022	31719835	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1
chr7.4	exon	31719382	31719514	31719382	ID=MS.gene87076.t1.exon2;Parent=MS.gene87076.t1
chr7.4	CDS	31719382	31719514	31719382	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1
chr7.4	exon	31719025	31719220	31719025	ID=MS.gene87076.t1.exon3;Parent=MS.gene87076.t1
chr7.4	CDS	31719025	31719220	31719025	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1
chr7.4	exon	31718696	31718820	31718696	ID=MS.gene87076.t1.exon4;Parent=MS.gene87076.t1
chr7.4	CDS	31718696	31718820	31718696	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1
chr7.4	exon	31718091	31718249	31718091	ID=MS.gene87076.t1.exon5;Parent=MS.gene87076.t1
chr7.4	CDS	31718091	31718249	31718091	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1
chr7.4	exon	31717328	31717618	31717328	ID=MS.gene87076.t1.exon6;Parent=MS.gene87076.t1
chr7.4	CDS	31717328	31717618	31717328	ID=cds.MS.gene87076.t1;Parent=MS.gene87076.t1

Gene Sequence

>MS.gene87076

ATGAGTTTCAGAGAGAGGAACATAGAAGTTGTTGAAGAGAGGGAATGTGAAAAGTCAGTGAGGTCAAATGGGTCATTAACAAATACTACACAGTTTACAATTGATGAGAATCTTCTGGTTGATCCTAAATTGCTCTTTATTGGCTCCAAAATTGGTGAAGGTGCTCATGGAAAAGTTTATCAAGGAAGGTTAGTTGCAAAGGCTTGTGTGTATAATCTATTTGAGCTTATTTACTAATATAAGTATTTGTGAGATTGTTTAGGAGAGCTTATGAAAATAGCTTATGACATATCTATAAGCTGTTTTCAAATTATTTCCATAAGCTCTCCAGTATAGCTTATTTAAACAGCTTATTTGAAAACAATTTGACTTTATTTTATCAGTTATTATACAAATATCTTATGCATAAGTACTTATATGATAAGTGCTTATTAAACTGTGTATCCAAACAGGGTCTTATCTGACGTATCTTTTTTACTTATGAACAACTGACTTAATATTTTTCCAGATATGTAGATCAAATTGTTGCTATCAAAGTTCTGCAGCGTGGGACTACGTCAGAAGAAAGAGCTTCTCTTGAAAATCGTTTTGCACGGGAAGTTAATATGATGTCTCGTGTCCATCATGACAATCTTGTAAAGGTAAATGCCATTGCAGCGATTATCTTTAATGTATTTTTGTAGTTATGCTCTACTGAGTACTGTATCTATGTTATATGTATGTGATTGGTGGTTTCCTCTGATATAAAATAATGATCTCATTAAGTTGATTTTTGTTTTCTTATTATTATTCGTTTTTGCAGTTTATCGGAGCATGCAAGGATCCGCTGATGGTGATAGTTACAGAGCTATTACCTGGAATGTCACTGCGAAAATATTTAACGAGCATCCGTCCTAATCCTTTAGACATTCATGTAGCTATAAACTTTGCCCTTGATATCGCTCGAGCCATGGATTGGCTGCACGCTAACGGGATCATACATAGAGATCTAAAACCCGGTATTGTTATGTATATGTAGTAGATATTATGTACACTTGATAAATTGTATGTAGACGTTATGTTATGGATTTCATGCTTAATGTTAGAACATTGCTATCTAATGGTAATAGTTTTTGGCATTAATAGCAGAAGTTAAATTGAGGTATATAGTGATGAGTTCTAAACTTAACAAGTTTTATGTTTTTGCAACTGTCACAATGCAGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGTCTTGCTAGAGAAGAGTCGGTGACTGAAATGATGACTGCAGAAACAGGAACTTACCGATGGATGGCACCAGAGGTATGCTGTCTTTTTGGAACGTGAAATGTAAAAAGAGTAAAAAGAGAAAATCCTGCCTATGCATAGCCTTGCTATGCATAGCCGTTCCCAAGCCCGGATGAACGGAGAGGGTTGTGTTAGGCCTCGACAGCCAATGTAAAACTTTGTTGAATCTCTATGACATGGACCAAATATGAATGACGTAATTTGATACATGTAGCCAACCCCACTTGGTGGGGAAAAGCTTGGTTGTTGTTGTTGACTCAATTGTTTTACTGACAACCATCTAAAATTGTGCTCTAGCGGGTCCAATCATGATGGCACTTTTTGGTGCTTAAGTATCATTTAGCAAATTCTCGTATAATCTGTAATTTATGGAATTAACATATTTTTTTCTTTCTTTCTGGATTTCCTGATAATACTTTGTATCCATAGAATTTCTTATATGACAGTTCATGTTCTTGCAGTTGTACAGTACTGTAACACTGCGTCAAGGAGAGAAAAAACACTATAACAACAAGGTTGACGTCTATAGCTTTGGGATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGGTATTAAATTCGAAATAACCGAGTGTTTATTCATCAATCAGCTGGTTATATTTTTGCCTCAAATTAGGAATATTTTGGGTATGGCTCATAGTTACTGATAAGTGGATTGGGTTATGGCTCATAGTAAACTTTAAGTTTGAAATAATAAAAAGGAACTGTAGTCTGCAGCCGCTCTGCAGTTGGAAACAACCATAATCGGCCGAACTTCGTGATCAAACTTTTTGTGTTTATTGTTTGCGTTTTTTCGTATCTTTATTCTTTTTGAACCAGGGTTCCTTTCCTAACAAAACGTTTGTGCAAATTTCTCTACAATGATTTGAGGATAGTTGTAGTAGACCTTATTCATGTTATGCATGTCGTTGAAGGATTGAAGTTAATATATTAGTTTGCACACTTTCAAAGCAAATTTTTGCAAGTTATTGGGATTGTTGCTATTTGTTAATCATGAAATGGTTTGAATTTGAGATTGCAGCAAGAGAGGCCGAAAATTCCTGATGATATATCACCTGATCTTGCTTTCGTCATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGCTTTAGTCAGATAATCCGGATGCTCAATGAGTTTCTCTTCACACTCTCGCCACTATCTCCTCCCTTACCAGAACCCGACAATGAACCTAAGGCGGCAACAACAAGTAATAATGGTGCCATTACTGAATTTTCTGCCCGGAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTATTTTCTTCAAAAAGGATAAAAAACTAA

Protein sequence

>MS.gene87076.t1

MSFRERNIEVVEERECEKSVRSNGSLTNTTQFTIDENLLVDPKLLFIGSKIGEGAHGKVYQGRYVDQIVAIKVLQRGTTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPNPLDIHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKIPDDISPDLAFVIQSCWVEDPNLRPSFSQIIRMLNEFLFTLSPLSPPLPEPDNEPKAATTSNNGAITEFSARNKGKFAFLRQLFSSKRIKN