Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87483.t1 | RHN59133.1 | 94.7 | 300 | 15 | 1 | 1 | 299 | 1 | 300 | 5.00E-161 | 577 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87483.t1 | P40025 | 30.2 | 159 | 103 | 2 | 9 | 159 | 48 | 206 | 4.6e-14 | 80.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87483.t1 | A0A072UHB0 | 94.7 | 300 | 15 | 1 | 1 | 299 | 25 | 324 | 3.6e-161 | 577.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87483 | MS.gene26907 | PPI |
| MS.gene87483 | MS.gene006477 | PPI |
| MS.gene87483 | MS.gene80067 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87483.t1 | MTR_4g021825 | 94.333 | 300 | 16 | 1 | 1 | 299 | 25 | 324 | 0.0 | 568 |
| MS.gene87483.t1 | MTR_7g062150 | 73.754 | 301 | 77 | 1 | 1 | 299 | 1 | 301 | 1.34e-165 | 462 |
| MS.gene87483.t1 | MTR_4g021800 | 75.601 | 291 | 63 | 3 | 10 | 299 | 13 | 296 | 1.07e-156 | 439 |
| MS.gene87483.t1 | MTR_4g021800 | 75.969 | 258 | 54 | 3 | 43 | 299 | 1 | 251 | 3.03e-137 | 388 |
| MS.gene87483.t1 | MTR_7g062150 | 72.609 | 230 | 61 | 1 | 1 | 228 | 1 | 230 | 1.31e-120 | 346 |
| MS.gene87483.t1 | MTR_4g021800 | 74.545 | 220 | 51 | 2 | 10 | 228 | 13 | 228 | 2.10e-113 | 327 |
| MS.gene87483.t1 | MTR_2g097520 | 54.608 | 293 | 118 | 3 | 10 | 299 | 11 | 291 | 1.18e-110 | 322 |
| MS.gene87483.t1 | MTR_4g064380 | 52.249 | 289 | 118 | 2 | 11 | 299 | 13 | 281 | 3.90e-105 | 308 |
| MS.gene87483.t1 | MTR_1g085570 | 48.611 | 288 | 100 | 2 | 12 | 299 | 18 | 257 | 1.15e-92 | 275 |
| MS.gene87483.t1 | MTR_1g085570 | 48.611 | 288 | 100 | 2 | 12 | 299 | 10 | 249 | 1.41e-92 | 275 |
| MS.gene87483.t1 | MTR_1g085570 | 48.443 | 289 | 100 | 3 | 12 | 299 | 10 | 250 | 1.05e-90 | 270 |
| MS.gene87483.t1 | MTR_1g085570 | 48.954 | 239 | 74 | 2 | 12 | 250 | 10 | 200 | 1.98e-75 | 230 |
| MS.gene87483.t1 | MTR_1g104610 | 41.971 | 274 | 114 | 4 | 7 | 277 | 3 | 234 | 2.39e-70 | 219 |
| MS.gene87483.t1 | MTR_1g104610 | 43.265 | 245 | 96 | 3 | 7 | 250 | 3 | 205 | 1.09e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87483.t1 | AT5G02230 | 61.921 | 302 | 90 | 3 | 1 | 299 | 1 | 280 | 1.37e-125 | 360 |
| MS.gene87483.t1 | AT5G02230 | 61.921 | 302 | 90 | 3 | 1 | 299 | 1 | 280 | 1.37e-125 | 360 |
| MS.gene87483.t1 | AT5G02230 | 61.921 | 302 | 90 | 3 | 1 | 299 | 38 | 317 | 5.48e-125 | 360 |
| MS.gene87483.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 1 | 295 | 1 | 280 | 4.84e-112 | 325 |
| MS.gene87483.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 1 | 295 | 1 | 280 | 4.84e-112 | 325 |
| MS.gene87483.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 1 | 295 | 1 | 280 | 4.84e-112 | 325 |
| MS.gene87483.t1 | AT5G59480 | 53.846 | 299 | 115 | 4 | 1 | 295 | 1 | 280 | 4.84e-112 | 325 |
| MS.gene87483.t1 | AT5G59480 | 53.846 | 299 | 114 | 5 | 1 | 295 | 1 | 279 | 5.71e-110 | 320 |
| MS.gene87483.t1 | AT5G59490 | 50.658 | 304 | 107 | 4 | 1 | 299 | 1 | 266 | 2.20e-95 | 283 |
| MS.gene87483.t1 | AT5G59490 | 53.200 | 250 | 79 | 3 | 1 | 250 | 1 | 212 | 2.84e-77 | 234 |
| MS.gene87483.t1 | AT3G62040 | 49.609 | 256 | 78 | 5 | 47 | 299 | 5 | 212 | 4.56e-76 | 231 |
| MS.gene87483.t1 | AT2G32150 | 42.066 | 271 | 113 | 4 | 7 | 277 | 3 | 229 | 1.02e-73 | 227 |
| MS.gene87483.t1 | AT2G32150 | 43.460 | 237 | 93 | 3 | 14 | 250 | 7 | 202 | 3.37e-62 | 196 |
| MS.gene87483.t1 | AT2G32150 | 42.396 | 217 | 84 | 3 | 14 | 230 | 7 | 182 | 2.67e-53 | 172 |
Find 54 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAAGGCAATCATATTT+TGG | 0.184331 | 4.1:-76230636 | None:intergenic |
| ACCCTTCTTTACAAGAATTA+TGG | 0.236813 | 4.1:+76230940 | MS.gene87483:CDS |
| GATGATGACATTGAGTTTCT+AGG | 0.275326 | 4.1:+76231532 | MS.gene87483:CDS |
| AACAACTCTAGCAGGATTAA+AGG | 0.288819 | 4.1:+76230963 | MS.gene87483:CDS |
| CTGAGGCAATACCTGATCTA+TGG | 0.308840 | 4.1:+76232212 | MS.gene87483:CDS |
| AAAACTTACAAGTTTCCTAT+AGG | 0.310093 | 4.1:-76231285 | None:intergenic |
| TTCATTTCTATTCAGGCAAT+TGG | 0.316082 | 4.1:+76231070 | MS.gene87483:intron |
| ACTTTGTATCCACTCAGTTC+TGG | 0.328194 | 4.1:+76230764 | MS.gene87483:CDS |
| AAACTTACAAGTTTCCTATA+GGG | 0.346060 | 4.1:-76231284 | None:intergenic |
| CTGCTTGCACTACTACTTGT+TGG | 0.347300 | 4.1:-76231574 | None:intergenic |
| GGATTAGAAGATTGCTTTGA+AGG | 0.372172 | 4.1:+76231454 | MS.gene87483:CDS |
| TGAAACCAGACCCAGTTCTA+AGG | 0.386637 | 4.1:+76231243 | MS.gene87483:CDS |
| TGTTGATGAGCCTGCCCTAT+AGG | 0.387214 | 4.1:+76231270 | MS.gene87483:CDS |
| CTTAAGACACTAAACATACT+TGG | 0.390861 | 4.1:+76231433 | MS.gene87483:CDS |
| TTCCATAATTCTTGTAAAGA+AGG | 0.391744 | 4.1:-76230942 | None:intergenic |
| TGACTTTGGCAGGATTCCAC+TGG | 0.399710 | 4.1:-76231641 | None:intergenic |
| GGCAGGATTCCACTGGGATT+CGG | 0.404652 | 4.1:-76231634 | None:intergenic |
| AAACAATTGGTGACTTTGGC+AGG | 0.412040 | 4.1:-76231651 | None:intergenic |
| GTATTGCCTCAGGTAGGTTA+TGG | 0.426317 | 4.1:-76232201 | None:intergenic |
| ATCAGAAAATGCCATTCAAT+TGG | 0.440833 | 4.1:+76231681 | MS.gene87483:CDS |
| GAGACAACAGTAACTGCTTA+AGG | 0.446956 | 4.1:+76232283 | MS.gene87483:CDS |
| TCTGGTTTCAAGTTCTCATA+AGG | 0.450135 | 4.1:-76231230 | None:intergenic |
| TCTGATGGCTTGCAAACAAT+TGG | 0.450841 | 4.1:-76231664 | None:intergenic |
| GAGACAATGCTCCTGTGGAT+TGG | 0.472943 | 4.1:-76231502 | None:intergenic |
| TTACAGTTCTATGTGGGTCA+AGG | 0.487086 | 4.1:-76231720 | None:intergenic |
| GACTTTGGCAGGATTCCACT+GGG | 0.488788 | 4.1:-76231640 | None:intergenic |
| TCCATAATTCTTGTAAAGAA+GGG | 0.493278 | 4.1:-76230941 | None:intergenic |
| TTGCAAACAATTGGTGACTT+TGG | 0.496086 | 4.1:-76231655 | None:intergenic |
| GGCACACCACAGAGAGTTCA+AGG | 0.504267 | 4.1:+76232154 | MS.gene87483:CDS |
| AAGTCAGCCTCCCATAGATC+AGG | 0.505327 | 4.1:-76232223 | None:intergenic |
| TTACAAGTTTCCTATAGGGC+AGG | 0.511447 | 4.1:-76231280 | None:intergenic |
| AATTATGGAACAACTCTAGC+AGG | 0.515956 | 4.1:+76230955 | MS.gene87483:CDS |
| CATAGATCAGGTATTGCCTC+AGG | 0.516288 | 4.1:-76232211 | None:intergenic |
| AGTATTGATCACAGACTACA+TGG | 0.525680 | 4.1:+76230873 | MS.gene87483:intron |
| AGTTCTATGTGGGTCAAGGT+TGG | 0.539209 | 4.1:-76231716 | None:intergenic |
| TGAGGCAATACCTGATCTAT+GGG | 0.540080 | 4.1:+76232213 | MS.gene87483:CDS |
| AAGTCAGAAGTTATGTACAC+TGG | 0.544272 | 4.1:+76232247 | MS.gene87483:CDS |
| TCAAGGTGCAGATTATGCAT+TGG | 0.546977 | 4.1:+76232171 | MS.gene87483:CDS |
| TTGACTATGATGAACTTCAC+AGG | 0.551155 | 4.1:+76231101 | MS.gene87483:CDS |
| AGTGGGACTCGACACTGTGC+TGG | 0.555191 | 4.1:+76231874 | MS.gene87483:CDS |
| TGGGATTCGGCTGAGCAAGA+TGG | 0.580421 | 4.1:-76231621 | None:intergenic |
| AGACTCTTAATCCAATCCAC+AGG | 0.582574 | 4.1:+76231491 | MS.gene87483:CDS |
| CATCTGAGACAATGCTCCTG+TGG | 0.586854 | 4.1:-76231507 | None:intergenic |
| AGTGTCCGCAACATACAAGC+TGG | 0.586963 | 4.1:+76231845 | MS.gene87483:CDS |
| AGTCAGAAGTTATGTACACT+GGG | 0.610600 | 4.1:+76232248 | MS.gene87483:CDS |
| CATACAAGCTGGAAAACAAG+TGG | 0.628481 | 4.1:+76231856 | MS.gene87483:CDS |
| GGCAATACCTGATCTATGGG+AGG | 0.662711 | 4.1:+76232216 | MS.gene87483:CDS |
| TCTGCAAGACCAGAACTGAG+TGG | 0.680329 | 4.1:-76230773 | None:intergenic |
| ATACAAGCTGGAAAACAAGT+GGG | 0.683793 | 4.1:+76231857 | MS.gene87483:CDS |
| CTTGCTCAGCCGAATCCCAG+TGG | 0.684389 | 4.1:+76231625 | MS.gene87483:CDS |
| TTACTGTTGTCTCTACAGCA+AGG | 0.685440 | 4.1:-76232273 | None:intergenic |
| TCTGCACCTTGAACTCTCTG+TGG | 0.705341 | 4.1:-76232160 | None:intergenic |
| GATCAGGTATTGCCTCAGGT+AGG | 0.713314 | 4.1:-76232207 | None:intergenic |
| AAGCATCCATAACCTACCTG+AGG | 0.713962 | 4.1:+76232195 | MS.gene87483:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATATGAAAATTTCAATT+TGG | - | chr4.1:76230696-76230715 | None:intergenic | 15.0% |
| !!! | TAAGTTTTTTATAACCAAAA+TGG | + | chr4.1:76231300-76231319 | MS.gene87483:intron | 15.0% |
| !! | ATAGAAATGAAACAATAAAC+AGG | - | chr4.1:76231061-76231080 | None:intergenic | 20.0% |
| !! | TTATTGTTTCATTTCTATTC+AGG | + | chr4.1:76231063-76231082 | MS.gene87483:intron | 20.0% |
| !!! | TTATTCTATTGATTCCATTT+TGG | - | chr4.1:76231317-76231336 | None:intergenic | 20.0% |
| ! | AAAACTTACAAGTTTCCTAT+AGG | - | chr4.1:76231288-76231307 | None:intergenic | 25.0% |
| ! | AAACTTACAAGTTTCCTATA+GGG | - | chr4.1:76231287-76231306 | None:intergenic | 25.0% |
| ! | AAATGGAAATACCATTTAAC+AGG | - | chr4.1:76231016-76231035 | None:intergenic | 25.0% |
| ! | AAGTAACAGATAGATCATAA+AGG | - | chr4.1:76231755-76231774 | None:intergenic | 25.0% |
| ! | ACTATATCACTACTGTTTAT+AGG | - | chr4.1:76231959-76231978 | None:intergenic | 25.0% |
| ! | AGTAACAGATAGATCATAAA+GGG | - | chr4.1:76231754-76231773 | None:intergenic | 25.0% |
| ! | CCATTTAACAGGAAAATATA+AGG | - | chr4.1:76231005-76231024 | None:intergenic | 25.0% |
| ! | GCATATTCAAAATCTGAAAA+TGG | - | chr4.1:76231033-76231052 | None:intergenic | 25.0% |
| ! | TATGAAATGTTGTCAAATAG+CGG | - | chr4.1:76231983-76232002 | None:intergenic | 25.0% |
| ! | TCCATAATTCTTGTAAAGAA+GGG | - | chr4.1:76230944-76230963 | None:intergenic | 25.0% |
| ! | TGAAATACTTACCAAAAAGA+AGG | - | chr4.1:76230653-76230672 | None:intergenic | 25.0% |
| ! | TTCCATAATTCTTGTAAAGA+AGG | - | chr4.1:76230945-76230964 | None:intergenic | 25.0% |
| !! | AAAAGAAGGCAATCATATTT+TGG | - | chr4.1:76230639-76230658 | None:intergenic | 25.0% |
| !! | AAATATGATTGCCTTCTTTT+TGG | + | chr4.1:76230639-76230658 | MS.gene87483:CDS | 25.0% |
| !! | ATTTTCTTACAGTTCTATGT+GGG | - | chr4.1:76231729-76231748 | None:intergenic | 25.0% |
| !! | CAAGTAATTTTTATGAGTTG+TGG | - | chr4.1:76232114-76232133 | None:intergenic | 25.0% |
| !! | CATAAATCATCAGATTTTCT+TGG | - | chr4.1:76230919-76230938 | None:intergenic | 25.0% |
| !! | CCTTATATTTTCCTGTTAAA+TGG | + | chr4.1:76231002-76231021 | MS.gene87483:intron | 25.0% |
| AAGAACAACTGAAAATGACA+TGG | - | chr4.1:76231818-76231837 | None:intergenic | 30.0% | |
| ACCCTTCTTTACAAGAATTA+TGG | + | chr4.1:76230940-76230959 | MS.gene87483:CDS | 30.0% | |
| ATCAGAAAATGCCATTCAAT+TGG | + | chr4.1:76231681-76231700 | MS.gene87483:CDS | 30.0% | |
| CTAGCAGTTTATTTAAACAG+CGG | - | chr4.1:76232069-76232088 | None:intergenic | 30.0% | |
| CTTAAGACACTAAACATACT+TGG | + | chr4.1:76231433-76231452 | MS.gene87483:CDS | 30.0% | |
| TTCATTTCTATTCAGGCAAT+TGG | + | chr4.1:76231070-76231089 | MS.gene87483:intron | 30.0% | |
| ! | AATTGAATGGCATTTTCTGA+TGG | - | chr4.1:76231682-76231701 | None:intergenic | 30.0% |
| ! | ATCAACATTTTCCTTAGAAC+TGG | - | chr4.1:76231257-76231276 | None:intergenic | 30.0% |
| ! | GATTTTCTTACAGTTCTATG+TGG | - | chr4.1:76231730-76231749 | None:intergenic | 30.0% |
| ! | GCATGTCGACAAAATTTTAA+AGG | + | chr4.1:76230797-76230816 | MS.gene87483:CDS | 30.0% |
| ! | TCAACATTTTCCTTAGAACT+GGG | - | chr4.1:76231256-76231275 | None:intergenic | 30.0% |
| ! | TCATTTTCAGTTGTTCTTTG+AGG | + | chr4.1:76231820-76231839 | MS.gene87483:intron | 30.0% |
| !! | TATTTTGAGAGCCAATTGAA+TGG | - | chr4.1:76231695-76231714 | None:intergenic | 30.0% |
| !!! | AGGCAATCATATTTTGGTTT+TGG | - | chr4.1:76230633-76230652 | None:intergenic | 30.0% |
| AACAACTCTAGCAGGATTAA+AGG | + | chr4.1:76230963-76230982 | MS.gene87483:CDS | 35.0% | |
| AAGTCAGAAGTTATGTACAC+TGG | + | chr4.1:76232247-76232266 | MS.gene87483:CDS | 35.0% | |
| AATTATGGAACAACTCTAGC+AGG | + | chr4.1:76230955-76230974 | MS.gene87483:CDS | 35.0% | |
| AGTCAGAAGTTATGTACACT+GGG | + | chr4.1:76232248-76232267 | MS.gene87483:CDS | 35.0% | |
| ATACAAGCTGGAAAACAAGT+GGG | + | chr4.1:76231857-76231876 | MS.gene87483:CDS | 35.0% | |
| ATGAGTTGTGGCTCATTAAA+AGG | - | chr4.1:76232102-76232121 | None:intergenic | 35.0% | |
| CAGGAAAATATAAGGATAGC+TGG | - | chr4.1:76230997-76231016 | None:intergenic | 35.0% | |
| CTCTATCTCAAACTGCTAAA+GGG | + | chr4.1:76231142-76231161 | MS.gene87483:intron | 35.0% | |
| GATGATGACATTGAGTTTCT+AGG | + | chr4.1:76231532-76231551 | MS.gene87483:CDS | 35.0% | |
| GGATTAGAAGATTGCTTTGA+AGG | + | chr4.1:76231454-76231473 | MS.gene87483:CDS | 35.0% | |
| GTTATAGAGCTATTACGTAG+TGG | - | chr4.1:76232047-76232066 | None:intergenic | 35.0% | |
| TCTCTATCTCAAACTGCTAA+AGG | + | chr4.1:76231141-76231160 | MS.gene87483:intron | 35.0% | |
| TGCTAAAGGGTTGTGATAAA+GGG | + | chr4.1:76231155-76231174 | MS.gene87483:intron | 35.0% | |
| TTGACTATGATGAACTTCAC+AGG | + | chr4.1:76231101-76231120 | MS.gene87483:CDS | 35.0% | |
| ! | TTGCAAACAATTGGTGACTT+TGG | - | chr4.1:76231658-76231677 | None:intergenic | 35.0% |
| ! | TTGCTTGCTTAGTTCTTCAT+TGG | + | chr4.1:76231790-76231809 | MS.gene87483:intron | 35.0% |
| !! | AGTATTGATCACAGACTACA+TGG | + | chr4.1:76230873-76230892 | MS.gene87483:intron | 35.0% |
| !! | TCTGGTTTCAAGTTCTCATA+AGG | - | chr4.1:76231233-76231252 | None:intergenic | 35.0% |
| !!! | ATTTTGGTTTTGGTGTGAAG+AGG | - | chr4.1:76230623-76230642 | None:intergenic | 35.0% |
| !!! | CTCTTTGCAGTTTTGTTCAT+GGG | + | chr4.1:76231201-76231220 | MS.gene87483:intron | 35.0% |
| !!! | TCTCTTTGCAGTTTTGTTCA+TGG | + | chr4.1:76231200-76231219 | MS.gene87483:intron | 35.0% |
| ACTTTGTATCCACTCAGTTC+TGG | + | chr4.1:76230764-76230783 | MS.gene87483:CDS | 40.0% | |
| AGACTCTTAATCCAATCCAC+AGG | + | chr4.1:76231491-76231510 | MS.gene87483:CDS | 40.0% | |
| CATACAAGCTGGAAAACAAG+TGG | + | chr4.1:76231856-76231875 | MS.gene87483:CDS | 40.0% | |
| CTGCTAAAGGGTTGTGATAA+AGG | + | chr4.1:76231154-76231173 | MS.gene87483:intron | 40.0% | |
| TCAAGGTGCAGATTATGCAT+TGG | + | chr4.1:76232171-76232190 | MS.gene87483:CDS | 40.0% | |
| TGAGGCAATACCTGATCTAT+GGG | + | chr4.1:76232213-76232232 | MS.gene87483:CDS | 40.0% | |
| TTACAAGTTTCCTATAGGGC+AGG | - | chr4.1:76231283-76231302 | None:intergenic | 40.0% | |
| TTACAGTTCTATGTGGGTCA+AGG | - | chr4.1:76231723-76231742 | None:intergenic | 40.0% | |
| TTACTGTTGTCTCTACAGCA+AGG | - | chr4.1:76232276-76232295 | None:intergenic | 40.0% | |
| ! | AAACAATTGGTGACTTTGGC+AGG | - | chr4.1:76231654-76231673 | None:intergenic | 40.0% |
| ! | ATTTTCCTTAGAACTGGGTC+TGG | - | chr4.1:76231251-76231270 | None:intergenic | 40.0% |
| ! | GTTTTCCAGCTTGTATGTTG+CGG | - | chr4.1:76231853-76231872 | None:intergenic | 40.0% |
| ! | TCTGATGGCTTGCAAACAAT+TGG | - | chr4.1:76231667-76231686 | None:intergenic | 40.0% |
| AAGCATCCATAACCTACCTG+AGG | + | chr4.1:76232195-76232214 | MS.gene87483:CDS | 45.0% | |
| AGTTCTATGTGGGTCAAGGT+TGG | - | chr4.1:76231719-76231738 | None:intergenic | 45.0% | |
| CTGAGGCAATACCTGATCTA+TGG | + | chr4.1:76232212-76232231 | MS.gene87483:CDS | 45.0% | |
| CTGCTTGCACTACTACTTGT+TGG | - | chr4.1:76231577-76231596 | None:intergenic | 45.0% | |
| GTATTGCCTCAGGTAGGTTA+TGG | - | chr4.1:76232204-76232223 | None:intergenic | 45.0% | |
| GTTGATTGCACCATCCAGAT+TGG | + | chr4.1:76232133-76232152 | MS.gene87483:intron | 45.0% | |
| TGAAACCAGACCCAGTTCTA+AGG | + | chr4.1:76231243-76231262 | MS.gene87483:CDS | 45.0% | |
| ! | ACACTGTGCTGGTAAGTCAT+TGG | + | chr4.1:76231885-76231904 | MS.gene87483:intron | 45.0% |
| ! | CATAGATCAGGTATTGCCTC+AGG | - | chr4.1:76232214-76232233 | None:intergenic | 45.0% |
| AAGTCAGCCTCCCATAGATC+AGG | - | chr4.1:76232226-76232245 | None:intergenic | 50.0% | |
| AGTGTCCGCAACATACAAGC+TGG | + | chr4.1:76231845-76231864 | MS.gene87483:CDS | 50.0% | |
| GACTTTGGCAGGATTCCACT+GGG | - | chr4.1:76231643-76231662 | None:intergenic | 50.0% | |
| GAGACAATGCTCCTGTGGAT+TGG | - | chr4.1:76231505-76231524 | None:intergenic | 50.0% | |
| GGCAATACCTGATCTATGGG+AGG | + | chr4.1:76232216-76232235 | MS.gene87483:CDS | 50.0% | |
| TCTGCAAGACCAGAACTGAG+TGG | - | chr4.1:76230776-76230795 | None:intergenic | 50.0% | |
| TCTGCACCTTGAACTCTCTG+TGG | - | chr4.1:76232163-76232182 | None:intergenic | 50.0% | |
| TGACTTTGGCAGGATTCCAC+TGG | - | chr4.1:76231644-76231663 | None:intergenic | 50.0% | |
| ! | CATCTGAGACAATGCTCCTG+TGG | - | chr4.1:76231510-76231529 | None:intergenic | 50.0% |
| ! | GATCAGGTATTGCCTCAGGT+AGG | - | chr4.1:76232210-76232229 | None:intergenic | 50.0% |
| ! | TGTTGATGAGCCTGCCCTAT+AGG | + | chr4.1:76231270-76231289 | MS.gene87483:CDS | 50.0% |
| CTCTCTGTGGTGTGCCAATC+TGG | - | chr4.1:76232150-76232169 | None:intergenic | 55.0% | |
| CTGTGGTGTGCCAATCTGGA+TGG | - | chr4.1:76232146-76232165 | None:intergenic | 55.0% | |
| GGCACACCACAGAGAGTTCA+AGG | + | chr4.1:76232154-76232173 | MS.gene87483:CDS | 55.0% | |
| GGCAGGATTCCACTGGGATT+CGG | - | chr4.1:76231637-76231656 | None:intergenic | 55.0% | |
| TGGGATTCGGCTGAGCAAGA+TGG | - | chr4.1:76231624-76231643 | None:intergenic | 55.0% | |
| AGTGGGACTCGACACTGTGC+TGG | + | chr4.1:76231874-76231893 | MS.gene87483:CDS | 60.0% | |
| CTTGCTCAGCCGAATCCCAG+TGG | + | chr4.1:76231625-76231644 | MS.gene87483:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 76230606 | 76232303 | 76230606 | ID=MS.gene87483 |
| chr4.1 | mRNA | 76230606 | 76232303 | 76230606 | ID=MS.gene87483.t1;Parent=MS.gene87483 |
| chr4.1 | exon | 76230606 | 76230660 | 76230606 | ID=MS.gene87483.t1.exon1;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76230606 | 76230660 | 76230606 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76230753 | 76230818 | 76230753 | ID=MS.gene87483.t1.exon2;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76230753 | 76230818 | 76230753 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76230887 | 76230984 | 76230887 | ID=MS.gene87483.t1.exon3;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76230887 | 76230984 | 76230887 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76231085 | 76231122 | 76231085 | ID=MS.gene87483.t1.exon4;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76231085 | 76231122 | 76231085 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76231211 | 76231298 | 76231211 | ID=MS.gene87483.t1.exon5;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76231211 | 76231298 | 76231211 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76231403 | 76231738 | 76231403 | ID=MS.gene87483.t1.exon6;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76231403 | 76231738 | 76231403 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76231830 | 76231895 | 76231830 | ID=MS.gene87483.t1.exon7;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76231830 | 76231895 | 76231830 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| chr4.1 | exon | 76232151 | 76232303 | 76232151 | ID=MS.gene87483.t1.exon8;Parent=MS.gene87483.t1 |
| chr4.1 | CDS | 76232151 | 76232303 | 76232151 | ID=cds.MS.gene87483.t1;Parent=MS.gene87483.t1 |
| Gene Sequence |
| Protein sequence |
