Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87637.t1 | XP_003605903.1 | 97.5 | 276 | 7 | 0 | 1 | 276 | 1 | 276 | 1.10E-151 | 545.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87637.t1 | P87027 | 45.5 | 187 | 102 | 0 | 90 | 276 | 9 | 195 | 2.5e-46 | 187.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87637.t1 | G7JDG8 | 97.5 | 276 | 7 | 0 | 1 | 276 | 1 | 276 | 8.2e-152 | 545.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054115 | MS.gene87637 | 0.819868 | 9.26E-53 | -1.69E-46 |
| MS.gene054537 | MS.gene87637 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene057690 | MS.gene87637 | 0.820718 | 5.92E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017154 | MS.gene87637 | PPI |
| MS.gene038386 | MS.gene87637 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87637.t1 | MTR_4g047870 | 97.464 | 276 | 7 | 0 | 1 | 276 | 1 | 276 | 0.0 | 564 |
| MS.gene87637.t1 | MTR_5g092060 | 63.320 | 259 | 92 | 1 | 21 | 276 | 31 | 289 | 1.85e-110 | 321 |
| MS.gene87637.t1 | MTR_3g064390 | 30.539 | 167 | 106 | 4 | 93 | 256 | 12 | 171 | 4.80e-14 | 69.7 |
| MS.gene87637.t1 | MTR_5g076590 | 29.670 | 182 | 112 | 5 | 78 | 256 | 3 | 171 | 7.16e-14 | 68.9 |
| MS.gene87637.t1 | MTR_7g103070 | 26.667 | 180 | 124 | 3 | 90 | 266 | 15 | 189 | 2.97e-13 | 67.8 |
| MS.gene87637.t1 | MTR_8g103550 | 27.879 | 165 | 113 | 2 | 93 | 256 | 11 | 170 | 6.45e-13 | 66.2 |
| MS.gene87637.t1 | MTR_4g098950 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 1.72e-12 | 65.5 |
| MS.gene87637.t1 | MTR_1g062760 | 26.667 | 180 | 123 | 4 | 90 | 266 | 13 | 186 | 1.75e-12 | 65.5 |
| MS.gene87637.t1 | MTR_5g013900 | 24.260 | 169 | 122 | 2 | 89 | 256 | 7 | 170 | 3.73e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87637.t1 | AT3G21700 | 60.606 | 297 | 91 | 5 | 1 | 276 | 1 | 292 | 1.54e-111 | 323 |
| MS.gene87637.t1 | AT3G21700 | 60.269 | 297 | 91 | 6 | 1 | 276 | 1 | 291 | 1.19e-109 | 319 |
| MS.gene87637.t1 | AT5G54840 | 52.500 | 280 | 124 | 5 | 1 | 276 | 12 | 286 | 2.41e-91 | 272 |
| MS.gene87637.t1 | AT3G21700 | 52.869 | 244 | 88 | 6 | 1 | 223 | 1 | 238 | 2.15e-68 | 212 |
| MS.gene87637.t1 | AT5G54840 | 44.444 | 198 | 101 | 5 | 1 | 194 | 12 | 204 | 1.69e-40 | 140 |
| MS.gene87637.t1 | AT5G54840 | 55.714 | 140 | 57 | 3 | 59 | 194 | 66 | 204 | 5.73e-40 | 139 |
| MS.gene87637.t1 | AT4G19640 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 1.83e-14 | 70.9 |
| MS.gene87637.t1 | AT5G45130 | 28.824 | 170 | 111 | 4 | 90 | 256 | 9 | 171 | 4.59e-14 | 69.7 |
| MS.gene87637.t1 | AT2G44610 | 25.444 | 169 | 120 | 2 | 89 | 256 | 7 | 170 | 3.32e-13 | 67.4 |
| MS.gene87637.t1 | AT5G45130 | 29.268 | 164 | 106 | 4 | 96 | 256 | 23 | 179 | 5.61e-13 | 66.6 |
| MS.gene87637.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.68e-13 | 66.2 |
| MS.gene87637.t1 | AT5G03530 | 27.222 | 180 | 122 | 4 | 90 | 266 | 12 | 185 | 8.68e-13 | 66.2 |
| MS.gene87637.t1 | AT5G59150 | 26.667 | 180 | 125 | 3 | 81 | 259 | 3 | 176 | 1.98e-12 | 65.5 |
| MS.gene87637.t1 | AT1G07410 | 24.852 | 169 | 121 | 2 | 92 | 259 | 13 | 176 | 5.19e-11 | 61.2 |
| MS.gene87637.t1 | AT4G39890 | 23.529 | 170 | 123 | 3 | 89 | 256 | 7 | 171 | 9.31e-11 | 60.5 |
Find 63 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACTTTATTTCAGTGTTC+TGG | 0.114454 | 4.1:+49242769 | MS.gene87637:intron |
| CACGTATATCCTATTGTATC+TGG | 0.293441 | 4.1:+49242275 | MS.gene87637:CDS |
| AAATGAATTGGATACTGATT+TGG | 0.296548 | 4.1:+49241821 | MS.gene87637:CDS |
| TGACTTTATTTCAGTGTTCT+GGG | 0.320506 | 4.1:+49242770 | MS.gene87637:intron |
| TTGTTGGGTGATTGCCAAAT+TGG | 0.353624 | 4.1:+49241861 | MS.gene87637:CDS |
| ATTGTTGTAGACGGCAATTC+CGG | 0.368449 | 4.1:+49242904 | MS.gene87637:intron |
| TTCACTCAAAATTAGCTTGT+TGG | 0.369785 | 4.1:+49241845 | MS.gene87637:CDS |
| TCACTCAAAATTAGCTTGTT+GGG | 0.374517 | 4.1:+49241846 | MS.gene87637:CDS |
| ATGGTCCATTGCATATCAAT+AGG | 0.376812 | 4.1:-49242965 | None:intergenic |
| CACCGACTGCTTGCCTGCTC+AGG | 0.383389 | 4.1:+49241675 | MS.gene87637:CDS |
| ATCTCCGCGGGCTTCGCTGT+TGG | 0.390597 | 4.1:+49241755 | MS.gene87637:CDS |
| ACCGGGCTGCTTTCCTGAGC+AGG | 0.395730 | 4.1:-49241688 | None:intergenic |
| GCCTGCTCAGGAAAGCAGCC+CGG | 0.410028 | 4.1:+49241687 | MS.gene87637:CDS |
| CCAGCTTCCAATGGCATGTA+AGG | 0.422047 | 4.1:+49242410 | MS.gene87637:CDS |
| GGTACAAAGAAGCAAGGAAA+TGG | 0.432118 | 4.1:+49242795 | MS.gene87637:CDS |
| CAAGTCGATGCACATTAAAC+AGG | 0.439545 | 4.1:+49242466 | MS.gene87637:CDS |
| AGAAGCAAGGAAATGGAATC+AGG | 0.446817 | 4.1:+49242802 | MS.gene87637:CDS |
| TTGTACTTCCCAGATACAAT+AGG | 0.464379 | 4.1:-49242284 | None:intergenic |
| CAAAACTCTTCGACTTACCT+TGG | 0.467610 | 4.1:+49244876 | MS.gene87637:CDS |
| CTGAATGAAATCATCAAACT+TGG | 0.473260 | 4.1:-49242939 | None:intergenic |
| ACGGCAATTCCGGTGTTGAT+AGG | 0.475548 | 4.1:+49242914 | MS.gene87637:CDS |
| TTCAGCATTGCCATCTCCGC+GGG | 0.486533 | 4.1:+49241743 | MS.gene87637:CDS |
| AACAGCGAAGCCCGCGGAGA+TGG | 0.486569 | 4.1:-49241753 | None:intergenic |
| ACTCCTTCGCGCTGCGAAGG+AGG | 0.493460 | 4.1:+49241604 | MS.gene87637:CDS |
| GAGGAAAGGACCAAATCAAA+TGG | 0.496937 | 4.1:+49242228 | MS.gene87637:CDS |
| GTCACTCCTTCGCGCTGCGA+AGG | 0.504957 | 4.1:+49241601 | MS.gene87637:CDS |
| CCTTACATGCCATTGGAAGC+TGG | 0.517454 | 4.1:-49242410 | None:intergenic |
| GTGGAAAGGAATCTAAATGT+TGG | 0.519478 | 4.1:+49244902 | MS.gene87637:CDS |
| AGATTCCTTTCCACTGTCCA+AGG | 0.525285 | 4.1:-49244893 | None:intergenic |
| TTTATTTCAGTGTTCTGGGA+TGG | 0.525629 | 4.1:+49242774 | MS.gene87637:intron |
| ACTGAGTCCTTACATGCCAT+TGG | 0.527947 | 4.1:-49242417 | None:intergenic |
| TGGTCCATTGCATATCAATA+GGG | 0.535828 | 4.1:-49242964 | None:intergenic |
| GTGTTGCAGGTGAAATATGT+TGG | 0.547304 | 4.1:+49242178 | MS.gene87637:intron |
| CTTCGACTTACCTTGGACAG+TGG | 0.548530 | 4.1:+49244883 | MS.gene87637:CDS |
| AGCTCCCTATTGATATGCAA+TGG | 0.560194 | 4.1:+49242960 | MS.gene87637:CDS |
| TGTTGCAGGTGAAATATGTT+GGG | 0.562818 | 4.1:+49242179 | MS.gene87637:intron |
| TTCCTGAGCAGGCAAGCAGT+CGG | 0.563126 | 4.1:-49241677 | None:intergenic |
| ACGTATATCCTATTGTATCT+GGG | 0.564779 | 4.1:+49242276 | MS.gene87637:CDS |
| AAATCAAATGGACAAAACAT+TGG | 0.567322 | 4.1:+49242240 | MS.gene87637:CDS |
| AAGAGCAGGGAGTGGAACAG+AGG | 0.569125 | 4.1:+49242209 | MS.gene87637:CDS |
| TATTGTATCTGGGAAGTACA+AGG | 0.574671 | 4.1:+49242286 | MS.gene87637:CDS |
| ACTTACCTTGGACAGTGGAA+AGG | 0.576381 | 4.1:+49244888 | MS.gene87637:CDS |
| ATCTCCGGAGCAACGATACA+CGG | 0.577259 | 4.1:-49241635 | None:intergenic |
| AAGCCTCCTTCGCAGCGCGA+AGG | 0.580558 | 4.1:-49241607 | None:intergenic |
| ACAGCCGTGTATCGTTGCTC+CGG | 0.583287 | 4.1:+49241631 | MS.gene87637:CDS |
| GAGCTCGAAGAATACATCTC+CGG | 0.586436 | 4.1:-49241650 | None:intergenic |
| TTGCAGAGAAGTTTCGACGC+TGG | 0.592971 | 4.1:-49241781 | None:intergenic |
| CAGGGAGTGGAACAGAGGAA+AGG | 0.595988 | 4.1:+49242214 | MS.gene87637:CDS |
| ATCAGAAGACCAGCTTCCAA+TGG | 0.601240 | 4.1:+49242401 | MS.gene87637:CDS |
| GGAGATGGCAATGCTGAATG+TGG | 0.604089 | 4.1:-49241738 | None:intergenic |
| ATTCAGCATTGCCATCTCCG+CGG | 0.613287 | 4.1:+49241742 | MS.gene87637:CDS |
| GCAATGGACCATCGCTAGTG+AGG | 0.615352 | 4.1:+49242976 | MS.gene87637:CDS |
| CTGTACGTAGCATTAGCACC+GGG | 0.621249 | 4.1:-49241705 | None:intergenic |
| GCTGTACGTAGCATTAGCAC+CGG | 0.623329 | 4.1:-49241706 | None:intergenic |
| AGCCATTACCTCACTAGCGA+TGG | 0.627900 | 4.1:-49242984 | None:intergenic |
| GACAAAACATTGGTTGTGAG+TGG | 0.635995 | 4.1:+49242250 | MS.gene87637:CDS |
| ACAGGCAAGAACATATGCAA+AGG | 0.636144 | 4.1:+49244778 | MS.gene87637:intron |
| TGGGATGGTACAAAGAAGCA+AGG | 0.641092 | 4.1:+49242789 | MS.gene87637:CDS |
| AACTTGGTTCCTATCAACAC+CGG | 0.647380 | 4.1:-49242923 | None:intergenic |
| GAATCCAACAGCGAAGCCCG+CGG | 0.660029 | 4.1:-49241759 | None:intergenic |
| TGCACTTGAAAAGAACAAAG+TGG | 0.664540 | 4.1:-49244810 | None:intergenic |
| GAGATGGCAATGCTGAATGT+GGG | 0.664888 | 4.1:-49241737 | None:intergenic |
| AATGGCATGTAAGGACTCAG+TGG | 0.696623 | 4.1:+49242419 | MS.gene87637:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr4.1:49244148-49244167 | None:intergenic | 10.0% |
| !! | AATATTATATATGATATGAA+GGG | + | chr4.1:49242370-49242389 | MS.gene87637:intron | 10.0% |
| !! | ATGAATATAAATTTATAAGA+GGG | + | chr4.1:49243354-49243373 | MS.gene87637:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr4.1:49244149-49244168 | None:intergenic | 10.0% |
| !! | TAATATTATATATGATATGA+AGG | + | chr4.1:49242369-49242388 | MS.gene87637:intron | 10.0% |
| !! | TATGAATATAAATTTATAAG+AGG | + | chr4.1:49243353-49243372 | MS.gene87637:intron | 10.0% |
| !! | AATTAGAGTTATATTGTATT+GGG | - | chr4.1:49244083-49244102 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr4.1:49244147-49244166 | None:intergenic | 15.0% |
| !! | ATATTATATATGATATGAAG+GGG | + | chr4.1:49242371-49242390 | MS.gene87637:intron | 15.0% |
| !! | ATTCATGATCAATTTAATTA+TGG | + | chr4.1:49244288-49244307 | MS.gene87637:intron | 15.0% |
| !! | CATATACTATAAAGTTAAAT+TGG | - | chr4.1:49243580-49243599 | None:intergenic | 15.0% |
| !! | GTTTGTAAATAAATGATTAT+GGG | - | chr4.1:49244680-49244699 | None:intergenic | 15.0% |
| !! | TAATTAGAGTTATATTGTAT+TGG | - | chr4.1:49244084-49244103 | None:intergenic | 15.0% |
| !! | TCAATGTTTATCTTAAAATA+TGG | - | chr4.1:49243427-49243446 | None:intergenic | 15.0% |
| !! | TGTTTGTAAATAAATGATTA+TGG | - | chr4.1:49244681-49244700 | None:intergenic | 15.0% |
| !! | TTAAAAATTATTAGTTGTGT+CGG | + | chr4.1:49242030-49242049 | MS.gene87637:intron | 15.0% |
| !! | TTAAGAATGAAAAAATGATT+CGG | - | chr4.1:49243268-49243287 | None:intergenic | 15.0% |
| !!! | ATTTTCCTTTCAATTATATT+TGG | + | chr4.1:49242698-49242717 | MS.gene87637:intron | 15.0% |
| !!! | GAAAAACCAAATTTAAAATA+TGG | - | chr4.1:49244468-49244487 | None:intergenic | 15.0% |
| !!! | TTTTGATGTTTAATAATCAT+AGG | - | chr4.1:49243638-49243657 | None:intergenic | 15.0% |
| !! | AAAGTGGAATATATTGAATT+GGG | - | chr4.1:49244124-49244143 | None:intergenic | 20.0% |
| !! | AAATTAGTAATAGTGTCAAT+AGG | - | chr4.1:49243774-49243793 | None:intergenic | 20.0% |
| !! | AATTTCTACTGAAAATTGAT+TGG | + | chr4.1:49242848-49242867 | MS.gene87637:intron | 20.0% |
| !! | ACTATTACTAATTTCTTTGT+AGG | + | chr4.1:49243780-49243799 | MS.gene87637:intron | 20.0% |
| !! | CGATCTAATAATTATTAATG+TGG | - | chr4.1:49244433-49244452 | None:intergenic | 20.0% |
| !! | CTATTACTAATTTCTTTGTA+GGG | + | chr4.1:49243781-49243800 | MS.gene87637:intron | 20.0% |
| !! | CTGAAATAAAGTCAAAAAAT+TGG | - | chr4.1:49242764-49242783 | None:intergenic | 20.0% |
| !! | TAAATAAATGATTATGGGTT+GGG | - | chr4.1:49244675-49244694 | None:intergenic | 20.0% |
| !! | TTAAGTGTAATTACAAGTTT+CGG | - | chr4.1:49241998-49242017 | None:intergenic | 20.0% |
| !! | TTTCACCAAATATAATTGAA+AGG | - | chr4.1:49242706-49242725 | None:intergenic | 20.0% |
| !!! | AACGATCCATATTTTAAATT+TGG | + | chr4.1:49244459-49244478 | MS.gene87637:intron | 20.0% |
| !!! | CAATCTTCTAAAAATTAAGA+TGG | - | chr4.1:49243082-49243101 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGTAAAT+GGG | - | chr4.1:49244014-49244033 | None:intergenic | 20.0% |
| !!! | TATTCATCTTTTCTCAATAA+AGG | - | chr4.1:49243553-49243572 | None:intergenic | 20.0% |
| !!! | TCAGGTAACATATATTATTT+TGG | + | chr4.1:49242820-49242839 | MS.gene87637:intron | 20.0% |
| !!! | TGACTTTTGTCAAAATATTA+TGG | + | chr4.1:49244243-49244262 | MS.gene87637:intron | 20.0% |
| ! | AAATCAAATGGACAAAACAT+TGG | + | chr4.1:49242240-49242259 | MS.gene87637:CDS | 25.0% |
| ! | ACATGTAAGACTAATCAATT+TGG | + | chr4.1:49243520-49243539 | MS.gene87637:intron | 25.0% |
| ! | CATTTGAACATTGAATTAAC+AGG | + | chr4.1:49244760-49244779 | MS.gene87637:intron | 25.0% |
| ! | GAAAGTGGAATATATTGAAT+TGG | - | chr4.1:49244125-49244144 | None:intergenic | 25.0% |
| ! | GTAAATAAATGATTATGGGT+TGG | - | chr4.1:49244676-49244695 | None:intergenic | 25.0% |
| ! | TAGGAATGACAAAACAATAA+AGG | - | chr4.1:49243619-49243638 | None:intergenic | 25.0% |
| ! | TTATTTACCAATTTGGTCAA+TGG | - | chr4.1:49244355-49244374 | None:intergenic | 25.0% |
| !! | AAATGAATTGGATACTGATT+TGG | + | chr4.1:49241821-49241840 | MS.gene87637:CDS | 25.0% |
| !! | AATGTTTTGTCCATTTGATT+TGG | - | chr4.1:49242241-49242260 | None:intergenic | 25.0% |
| !! | TCAGACTTTTGTCTAAAAAA+TGG | + | chr4.1:49241579-49241598 | MS.gene87637:CDS | 25.0% |
| !! | TGTTTTTCACACAAATGAAT+TGG | + | chr4.1:49241809-49241828 | MS.gene87637:CDS | 25.0% |
| !!! | AAAAACTGGTTTTTCCAATT+TGG | - | chr4.1:49241878-49241897 | None:intergenic | 25.0% |
| !!! | AACAGGTAATTTTTCGATTT+CGG | + | chr4.1:49242483-49242502 | MS.gene87637:intron | 25.0% |
| !!! | AATTGGAAAAACCAGTTTTT+TGG | + | chr4.1:49241878-49241897 | MS.gene87637:CDS | 25.0% |
| !!! | GGACACTTTTTTTTAGTAAA+TGG | - | chr4.1:49244015-49244034 | None:intergenic | 25.0% |
| !!! | TAACAACGTTTTATTCCAAA+AGG | + | chr4.1:49243466-49243485 | MS.gene87637:intron | 25.0% |
| !!! | TAGAGTGTTATTTACCAATT+TGG | - | chr4.1:49244362-49244381 | None:intergenic | 25.0% |
| !!! | TCTTTTAAGTTGATTCTGTA+AGG | + | chr4.1:49243388-49243407 | MS.gene87637:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+AGG | - | chr4.1:49244036-49244055 | None:intergenic | 25.0% |
| ACGTATATCCTATTGTATCT+GGG | + | chr4.1:49242276-49242295 | MS.gene87637:CDS | 30.0% | |
| AGGTAACGTGTAAAGAAAAT+AGG | - | chr4.1:49243754-49243773 | None:intergenic | 30.0% | |
| AGTAGTCATTAGACTAAGAT+TGG | - | chr4.1:49244519-49244538 | None:intergenic | 30.0% | |
| CAAATTTGTGGTATATGCAT+GGG | - | chr4.1:49243900-49243919 | None:intergenic | 30.0% | |
| CTAAAAAAGGACCAAATTTG+TGG | - | chr4.1:49243912-49243931 | None:intergenic | 30.0% | |
| CTGAATGAAATCATCAAACT+TGG | - | chr4.1:49242942-49242961 | None:intergenic | 30.0% | |
| GGTAACGTGTAAAGAAAATA+GGG | - | chr4.1:49243753-49243772 | None:intergenic | 30.0% | |
| GTAACGTGTAAAGAAAATAG+GGG | - | chr4.1:49243752-49243771 | None:intergenic | 30.0% | |
| GTCTCACATTAAATGAGATA+AGG | + | chr4.1:49243326-49243345 | MS.gene87637:intron | 30.0% | |
| TATATATGATATGAAGGGGA+TGG | + | chr4.1:49242375-49242394 | MS.gene87637:intron | 30.0% | |
| TCATATACGTACCAAAAAAC+TGG | - | chr4.1:49241892-49241911 | None:intergenic | 30.0% | |
| TCATTTGTGTGAAAAACAGA+CGG | - | chr4.1:49241807-49241826 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr4.1:49244140-49244159 | None:intergenic | 30.0% | |
| TTGTTGAAAAAATGTGTTGC+AGG | + | chr4.1:49242165-49242184 | MS.gene87637:intron | 30.0% | |
| ! | GTCTTACATGTAGATTTTGT+AGG | - | chr4.1:49243511-49243530 | None:intergenic | 30.0% |
| ! | TAGATTTTGTAGGCTTCTTA+TGG | - | chr4.1:49243501-49243520 | None:intergenic | 30.0% |
| ! | TGACTTTATTTCAGTGTTCT+GGG | + | chr4.1:49242770-49242789 | MS.gene87637:intron | 30.0% |
| ! | TTATGGAATTGAACTCCTTT+TGG | - | chr4.1:49243484-49243503 | None:intergenic | 30.0% |
| ! | TTGACTTTATTTCAGTGTTC+TGG | + | chr4.1:49242769-49242788 | MS.gene87637:intron | 30.0% |
| ! | TTGATGATCATTGATCCTAA+GGG | + | chr4.1:49244638-49244657 | MS.gene87637:intron | 30.0% |
| ! | TTTGATGATCATTGATCCTA+AGG | + | chr4.1:49244637-49244656 | MS.gene87637:intron | 30.0% |
| !! | ACTGCTTATAATGGATTATG+GGG | - | chr4.1:49244608-49244627 | None:intergenic | 30.0% |
| !! | CTTTCTAGTTAGTGTATGTT+TGG | + | chr4.1:49243011-49243030 | MS.gene87637:intron | 30.0% |
| !! | GACTGCTTATAATGGATTAT+GGG | - | chr4.1:49244609-49244628 | None:intergenic | 30.0% |
| !! | TCACTCAAAATTAGCTTGTT+GGG | + | chr4.1:49241846-49241865 | MS.gene87637:CDS | 30.0% |
| !! | TGACTGCTTATAATGGATTA+TGG | - | chr4.1:49244610-49244629 | None:intergenic | 30.0% |
| !! | TTCACTCAAAATTAGCTTGT+TGG | + | chr4.1:49241845-49241864 | MS.gene87637:CDS | 30.0% |
| AAGATTGAAAATCCGTCTTG+AGG | + | chr4.1:49243095-49243114 | MS.gene87637:intron | 35.0% | |
| AATCGATGGTAATTGGACAT+TGG | + | chr4.1:49242523-49242542 | MS.gene87637:intron | 35.0% | |
| ACATGCACATGCACTAAAAA+AGG | - | chr4.1:49243925-49243944 | None:intergenic | 35.0% | |
| AGTAAATGGGTCAGATATTC+CGG | - | chr4.1:49244001-49244020 | None:intergenic | 35.0% | |
| ATGGTCCATTGCATATCAAT+AGG | - | chr4.1:49242968-49242987 | None:intergenic | 35.0% | |
| CAACGTCAATTCAGATGAAA+GGG | + | chr4.1:49243690-49243709 | MS.gene87637:intron | 35.0% | |
| CACGTATATCCTATTGTATC+TGG | + | chr4.1:49242275-49242294 | MS.gene87637:CDS | 35.0% | |
| CCAAATTTGTGGTATATGCA+TGG | - | chr4.1:49243901-49243920 | None:intergenic | 35.0% | |
| CCATGCATATACCACAAATT+TGG | + | chr4.1:49243898-49243917 | MS.gene87637:intron | 35.0% | |
| GGATCAATGATCATCAAACA+TGG | - | chr4.1:49244635-49244654 | None:intergenic | 35.0% | |
| GTGAAATCCATTGACCAAAT+TGG | + | chr4.1:49244345-49244364 | MS.gene87637:intron | 35.0% | |
| GTGGAAAGGAATCTAAATGT+TGG | + | chr4.1:49244902-49244921 | MS.gene87637:CDS | 35.0% | |
| TAACTACATTAGTCCGATCT+CGG | - | chr4.1:49242550-49242569 | None:intergenic | 35.0% | |
| TCTAATTGGAACACTATGTG+CGG | - | chr4.1:49243836-49243855 | None:intergenic | 35.0% | |
| TGCACTTGAAAAGAACAAAG+TGG | - | chr4.1:49244813-49244832 | None:intergenic | 35.0% | |
| TGGTCCATTGCATATCAATA+GGG | - | chr4.1:49242967-49242986 | None:intergenic | 35.0% | |
| TGTGTTCAATCTATGAAGCA+CGG | + | chr4.1:49241922-49241941 | MS.gene87637:intron | 35.0% | |
| TGTTGCAGGTGAAATATGTT+GGG | + | chr4.1:49242179-49242198 | MS.gene87637:intron | 35.0% | |
| TTAGTGTATGTTTGGTTGAG+CGG | + | chr4.1:49243019-49243038 | MS.gene87637:intron | 35.0% | |
| TTATTAATGTGGTGAGTGTG+TGG | - | chr4.1:49244422-49244441 | None:intergenic | 35.0% | |
| TTCAGATGAAAGGGATTGAT+AGG | + | chr4.1:49243699-49243718 | MS.gene87637:intron | 35.0% | |
| TTGTACTTCCCAGATACAAT+AGG | - | chr4.1:49242287-49242306 | None:intergenic | 35.0% | |
| TTGTGGGAAATTATCAACTC+TGG | + | chr4.1:49242645-49242664 | MS.gene87637:intron | 35.0% | |
| ! | AGCAGGTGATTGATTCTAAT+TGG | - | chr4.1:49243850-49243869 | None:intergenic | 35.0% |
| ! | AGTTGATTCTGTAAGGTTGT+AGG | + | chr4.1:49243395-49243414 | MS.gene87637:intron | 35.0% |
| ! | TATTGTATCTGGGAAGTACA+AGG | + | chr4.1:49242286-49242305 | MS.gene87637:CDS | 35.0% |
| ! | TTTTAGTGCATGTGCATGTT+TGG | + | chr4.1:49243926-49243945 | MS.gene87637:intron | 35.0% |
| !! | TAAATGATTATGGGTTGGGT+AGG | - | chr4.1:49244671-49244690 | None:intergenic | 35.0% |
| !! | TATTAGTTGTGTCGGCTTAT+CGG | + | chr4.1:49242038-49242057 | MS.gene87637:intron | 35.0% |
| !! | TCCAATTACCATCGATTTGT+CGG | - | chr4.1:49242520-49242539 | None:intergenic | 35.0% |
| !! | TTTATTTCAGTGTTCTGGGA+TGG | + | chr4.1:49242774-49242793 | MS.gene87637:intron | 35.0% |
| AACTTGGTTCCTATCAACAC+CGG | - | chr4.1:49242926-49242945 | None:intergenic | 40.0% | |
| ACAGGCAAGAACATATGCAA+AGG | + | chr4.1:49244778-49244797 | MS.gene87637:intron | 40.0% | |
| AGAAGCAAGGAAATGGAATC+AGG | + | chr4.1:49242802-49242821 | MS.gene87637:CDS | 40.0% | |
| AGCTCCCTATTGATATGCAA+TGG | + | chr4.1:49242960-49242979 | MS.gene87637:CDS | 40.0% | |
| ATCACCTGCTTATAGCATAG+TGG | + | chr4.1:49243860-49243879 | MS.gene87637:intron | 40.0% | |
| ATTGTTGTAGACGGCAATTC+CGG | + | chr4.1:49242904-49242923 | MS.gene87637:intron | 40.0% | |
| CAAAACTCTTCGACTTACCT+TGG | + | chr4.1:49244876-49244895 | MS.gene87637:CDS | 40.0% | |
| CAAACTGTCTCAGATATTCC+GGG | + | chr4.1:49244184-49244203 | MS.gene87637:intron | 40.0% | |
| CAAGTCGATGCACATTAAAC+AGG | + | chr4.1:49242466-49242485 | MS.gene87637:CDS | 40.0% | |
| CACATATACCAGACACAACA+CGG | - | chr4.1:49242075-49242094 | None:intergenic | 40.0% | |
| CCAAACTGTCTCAGATATTC+CGG | + | chr4.1:49244183-49244202 | MS.gene87637:intron | 40.0% | |
| CGTTTGTTTGAATTGGCGTT+AGG | - | chr4.1:49243245-49243264 | None:intergenic | 40.0% | |
| GAGGAAAGGACCAAATCAAA+TGG | + | chr4.1:49242228-49242247 | MS.gene87637:CDS | 40.0% | |
| GATTCGGCGTTTGTTTGAAT+TGG | - | chr4.1:49243252-49243271 | None:intergenic | 40.0% | |
| GCAACGTCAATTCAGATGAA+AGG | + | chr4.1:49243689-49243708 | MS.gene87637:intron | 40.0% | |
| GGTACAAAGAAGCAAGGAAA+TGG | + | chr4.1:49242795-49242814 | MS.gene87637:CDS | 40.0% | |
| GTAAATGGGTCAGATATTCC+GGG | - | chr4.1:49244000-49244019 | None:intergenic | 40.0% | |
| GTGTCTGGTATATGTGTTCA+AGG | + | chr4.1:49242079-49242098 | MS.gene87637:intron | 40.0% | |
| GTGTGCTTGATTGTTGTAGA+CGG | + | chr4.1:49242895-49242914 | MS.gene87637:intron | 40.0% | |
| GTGTTGCAGGTGAAATATGT+TGG | + | chr4.1:49242178-49242197 | MS.gene87637:intron | 40.0% | |
| GTTGGGAATGAAAAAGAGCA+GGG | + | chr4.1:49242196-49242215 | MS.gene87637:CDS | 40.0% | |
| TCCTGATTTCACTGAAAACG+CGG | - | chr4.1:49243167-49243186 | None:intergenic | 40.0% | |
| TGTTGGGAATGAAAAAGAGC+AGG | + | chr4.1:49242195-49242214 | MS.gene87637:CDS | 40.0% | |
| TTGTTGGGTGATTGCCAAAT+TGG | + | chr4.1:49241861-49241880 | MS.gene87637:CDS | 40.0% | |
| ! | ATGTGTTGCTGGGTAATTGT+GGG | + | chr4.1:49242629-49242648 | MS.gene87637:intron | 40.0% |
| ! | CATGGACTGACTGCTTATAA+TGG | - | chr4.1:49244617-49244636 | None:intergenic | 40.0% |
| ! | GACAAAACATTGGTTGTGAG+TGG | + | chr4.1:49242250-49242269 | MS.gene87637:CDS | 40.0% |
| !! | ACATAGATGTCGATTTGCTC+TGG | + | chr4.1:49244388-49244407 | MS.gene87637:intron | 40.0% |
| AATGGCATGTAAGGACTCAG+TGG | + | chr4.1:49242419-49242438 | MS.gene87637:CDS | 45.0% | |
| ACTGAGTCCTTACATGCCAT+TGG | - | chr4.1:49242420-49242439 | None:intergenic | 45.0% | |
| ACTTACCTTGGACAGTGGAA+AGG | + | chr4.1:49244888-49244907 | MS.gene87637:CDS | 45.0% | |
| AGATTCCTTTCCACTGTCCA+AGG | - | chr4.1:49244896-49244915 | None:intergenic | 45.0% | |
| ATATGCATGGGATCCACAAG+TGG | - | chr4.1:49243888-49243907 | None:intergenic | 45.0% | |
| ATCAGAAGACCAGCTTCCAA+TGG | + | chr4.1:49242401-49242420 | MS.gene87637:CDS | 45.0% | |
| ATTGGACATTGGACCGAGAT+CGG | + | chr4.1:49242534-49242553 | MS.gene87637:intron | 45.0% | |
| CAATTACCCAGCAACACATG+TGG | - | chr4.1:49242628-49242647 | None:intergenic | 45.0% | |
| GAATGAAAAAGAGCAGGGAG+TGG | + | chr4.1:49242201-49242220 | MS.gene87637:CDS | 45.0% | |
| GAGATGGCAATGCTGAATGT+GGG | - | chr4.1:49241740-49241759 | None:intergenic | 45.0% | |
| GAGCTCGAAGAATACATCTC+CGG | - | chr4.1:49241653-49241672 | None:intergenic | 45.0% | |
| GCCGACAAATCGATGGTAAT+TGG | + | chr4.1:49242516-49242535 | MS.gene87637:intron | 45.0% | |
| TGGGATGGTACAAAGAAGCA+AGG | + | chr4.1:49242789-49242808 | MS.gene87637:CDS | 45.0% | |
| ! | CATGTGTTGCTGGGTAATTG+TGG | + | chr4.1:49242628-49242647 | MS.gene87637:intron | 45.0% |
| ! | CCGGAATATCTGAGACAGTT+TGG | - | chr4.1:49244186-49244205 | None:intergenic | 45.0% |
| ! | TCCGCGTTTTCAGTGAAATC+AGG | + | chr4.1:49243163-49243182 | MS.gene87637:intron | 45.0% |
| !! | AAATTAAAATCATATAAATA+TGG | + | chr4.1:49244581-49244600 | MS.gene87637:intron | 5.0% |
| AAATCATACTCCCTCCGTCC+CGG | - | chr4.1:49244205-49244224 | None:intergenic | 50.0% | |
| AGAATTTACTCCCTCCGTCC+CGG | + | chr4.1:49243979-49243998 | MS.gene87637:intron | 50.0% | |
| AGCCATTACCTCACTAGCGA+TGG | - | chr4.1:49242987-49243006 | None:intergenic | 50.0% | |
| ATCGGGACACGACTAATCTG+AGG | - | chr4.1:49241953-49241972 | None:intergenic | 50.0% | |
| ATCTCCGGAGCAACGATACA+CGG | - | chr4.1:49241638-49241657 | None:intergenic | 50.0% | |
| ATGGGTCAGATATTCCGGGA+CGG | - | chr4.1:49243996-49244015 | None:intergenic | 50.0% | |
| ATTCAGCATTGCCATCTCCG+CGG | + | chr4.1:49241742-49241761 | MS.gene87637:CDS | 50.0% | |
| CCAGCTTCCAATGGCATGTA+AGG | + | chr4.1:49242410-49242429 | MS.gene87637:CDS | 50.0% | |
| CCTTACATGCCATTGGAAGC+TGG | - | chr4.1:49242413-49242432 | None:intergenic | 50.0% | |
| CTGTACGTAGCATTAGCACC+GGG | - | chr4.1:49241708-49241727 | None:intergenic | 50.0% | |
| CTGTCTCAGATATTCCGGGA+CGG | + | chr4.1:49244188-49244207 | MS.gene87637:intron | 50.0% | |
| CTTCGACTTACCTTGGACAG+TGG | + | chr4.1:49244883-49244902 | MS.gene87637:CDS | 50.0% | |
| GAAAATCCGTCTTGAGGCTG+TGG | + | chr4.1:49243101-49243120 | MS.gene87637:intron | 50.0% | |
| GAATTCACGCATTCACGCAG+AGG | - | chr4.1:49244556-49244575 | None:intergenic | 50.0% | |
| GACCATCGCTAGTGAGGTAA+TGG | + | chr4.1:49242982-49243001 | MS.gene87637:intron | 50.0% | |
| GCGTGAATGCGTGAATTCAC+TGG | + | chr4.1:49244558-49244577 | MS.gene87637:intron | 50.0% | |
| GCTGTACGTAGCATTAGCAC+CGG | - | chr4.1:49241709-49241728 | None:intergenic | 50.0% | |
| GGAGATGGCAATGCTGAATG+TGG | - | chr4.1:49241741-49241760 | None:intergenic | 50.0% | |
| GGCACCACTATGCTATAAGC+AGG | - | chr4.1:49243867-49243886 | None:intergenic | 50.0% | |
| GTGTGTAGCCGACAAATCGA+TGG | + | chr4.1:49242509-49242528 | MS.gene87637:intron | 50.0% | |
| TGACACGACGTGTCTGACAT+CGG | - | chr4.1:49241971-49241990 | None:intergenic | 50.0% | |
| TTGCAGAGAAGTTTCGACGC+TGG | - | chr4.1:49241784-49241803 | None:intergenic | 50.0% | |
| !! | ACGGCAATTCCGGTGTTGAT+AGG | + | chr4.1:49242914-49242933 | MS.gene87637:CDS | 50.0% |
| !! | GTCGTGATTTTGACCTCACG+TGG | - | chr4.1:49243138-49243157 | None:intergenic | 50.0% |
| !! | GTGTCGGCTTATCGGCTTAT+CGG | + | chr4.1:49242046-49242065 | MS.gene87637:intron | 50.0% |
| !! | TAGCATAGTGGTGCCACTTG+TGG | + | chr4.1:49243872-49243891 | MS.gene87637:intron | 50.0% |
| AAGAGCAGGGAGTGGAACAG+AGG | + | chr4.1:49242209-49242228 | MS.gene87637:CDS | 55.0% | |
| AATCCGTCTTGAGGCTGTGG+CGG | + | chr4.1:49243104-49243123 | MS.gene87637:intron | 55.0% | |
| ACAGCCGTGTATCGTTGCTC+CGG | + | chr4.1:49241631-49241650 | MS.gene87637:CDS | 55.0% | |
| CAGCAACACATGTGGCTGGT+GGG | - | chr4.1:49242620-49242639 | None:intergenic | 55.0% | |
| CAGGGAGTGGAACAGAGGAA+AGG | + | chr4.1:49242214-49242233 | MS.gene87637:CDS | 55.0% | |
| CTCAGATATTCCGGGACGGA+GGG | + | chr4.1:49244192-49244211 | MS.gene87637:intron | 55.0% | |
| GACACGACGTGTCTGACATC+GGG | - | chr4.1:49241970-49241989 | None:intergenic | 55.0% | |
| GCAATGGACCATCGCTAGTG+AGG | + | chr4.1:49242976-49242995 | MS.gene87637:CDS | 55.0% | |
| GTCAGATATTCCGGGACGGA+GGG | - | chr4.1:49243992-49244011 | None:intergenic | 55.0% | |
| TACCCAGCAACACATGTGGC+TGG | - | chr4.1:49242624-49242643 | None:intergenic | 55.0% | |
| TCTCAGATATTCCGGGACGG+AGG | + | chr4.1:49244191-49244210 | MS.gene87637:intron | 55.0% | |
| TGGGTAGGCTTGTCTCCCTT+AGG | - | chr4.1:49244656-49244675 | None:intergenic | 55.0% | |
| TTCAGCATTGCCATCTCCGC+GGG | + | chr4.1:49241743-49241762 | MS.gene87637:CDS | 55.0% | |
| TTCCTGAGCAGGCAAGCAGT+CGG | - | chr4.1:49241680-49241699 | None:intergenic | 55.0% | |
| ! | ATCGGTGTCCGTGTTGTGTC+TGG | + | chr4.1:49242064-49242083 | MS.gene87637:intron | 55.0% |
| ! | CACCAGCCACATGTGTTGCT+GGG | + | chr4.1:49242619-49242638 | MS.gene87637:intron | 55.0% |
| CCACCAGCCACATGTGTTGC+TGG | + | chr4.1:49242618-49242637 | MS.gene87637:intron | 60.0% | |
| CCAGCAACACATGTGGCTGG+TGG | - | chr4.1:49242621-49242640 | None:intergenic | 60.0% | |
| GAATCCAACAGCGAAGCCCG+CGG | - | chr4.1:49241762-49241781 | None:intergenic | 60.0% | |
| GGTCAGATATTCCGGGACGG+AGG | - | chr4.1:49243993-49244012 | None:intergenic | 60.0% | |
| AACAGCGAAGCCCGCGGAGA+TGG | - | chr4.1:49241756-49241775 | None:intergenic | 65.0% | |
| AAGCCTCCTTCGCAGCGCGA+AGG | - | chr4.1:49241610-49241629 | None:intergenic | 65.0% | |
| ACTCCTTCGCGCTGCGAAGG+AGG | + | chr4.1:49241604-49241623 | MS.gene87637:CDS | 65.0% | |
| ATCTCCGCGGGCTTCGCTGT+TGG | + | chr4.1:49241755-49241774 | MS.gene87637:CDS | 65.0% | |
| CCACCGCCACAGCCTCAAGA+CGG | - | chr4.1:49243110-49243129 | None:intergenic | 65.0% | |
| CGTCTTGAGGCTGTGGCGGT+GGG | + | chr4.1:49243108-49243127 | MS.gene87637:intron | 65.0% | |
| GCCTGCTCAGGAAAGCAGCC+CGG | + | chr4.1:49241687-49241706 | MS.gene87637:CDS | 65.0% | |
| GGCGGTGGGAATTCCACGTG+AGG | + | chr4.1:49243122-49243141 | MS.gene87637:intron | 65.0% | |
| GTCACTCCTTCGCGCTGCGA+AGG | + | chr4.1:49241601-49241620 | MS.gene87637:CDS | 65.0% | |
| ! | ACCGGGCTGCTTTCCTGAGC+AGG | - | chr4.1:49241691-49241710 | None:intergenic | 65.0% |
| ! | CACCGACTGCTTGCCTGCTC+AGG | + | chr4.1:49241675-49241694 | MS.gene87637:CDS | 65.0% |
| CCGTCTTGAGGCTGTGGCGG+TGG | + | chr4.1:49243107-49243126 | MS.gene87637:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 49241576 | 49244946 | 49241576 | ID=MS.gene87637 |
| chr4.1 | mRNA | 49241576 | 49244946 | 49241576 | ID=MS.gene87637.t1;Parent=MS.gene87637 |
| chr4.1 | exon | 49241576 | 49241899 | 49241576 | ID=MS.gene87637.t1.exon1;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49241576 | 49241899 | 49241576 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| chr4.1 | exon | 49242187 | 49242307 | 49242187 | ID=MS.gene87637.t1.exon2;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49242187 | 49242307 | 49242187 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| chr4.1 | exon | 49242391 | 49242487 | 49242391 | ID=MS.gene87637.t1.exon3;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49242391 | 49242487 | 49242391 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| chr4.1 | exon | 49242784 | 49242823 | 49242784 | ID=MS.gene87637.t1.exon4;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49242784 | 49242823 | 49242784 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| chr4.1 | exon | 49242914 | 49242997 | 49242914 | ID=MS.gene87637.t1.exon5;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49242914 | 49242997 | 49242914 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| chr4.1 | exon | 49244782 | 49244946 | 49244782 | ID=MS.gene87637.t1.exon6;Parent=MS.gene87637.t1 |
| chr4.1 | CDS | 49244782 | 49244946 | 49244782 | ID=cds.MS.gene87637.t1;Parent=MS.gene87637.t1 |
| Gene Sequence |
| Protein sequence |
