Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88211.t1 | XP_013455799.1 | 98.6 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.00E+00 | 1101.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88211.t1 | Q8VCM8 | 33.1 | 537 | 307 | 14 | 20 | 532 | 28 | 536 | 1.4e-67 | 258.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88211.t1 | A0A072UVE5 | 98.6 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0e+00 | 1101.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene88211 | MS.gene28821 | PPI |
MS.gene88211 | MS.gene07068 | PPI |
MS.gene88211 | MS.gene072688 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88211.t1 | MTR_4g052530 | 98.582 | 564 | 8 | 0 | 1 | 564 | 1 | 564 | 0.0 | 1138 |
MS.gene88211.t1 | MTR_4g052530 | 95.205 | 584 | 8 | 1 | 1 | 564 | 1 | 584 | 0.0 | 1127 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88211.t1 | AT3G44330 | 74.074 | 567 | 138 | 4 | 1 | 562 | 1 | 563 | 0.0 | 855 |
Find 121 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACATTGACACCGTGTTAT+TGG | 0.199855 | 4.4:-49753544 | MS.gene88211:CDS |
AATTGTGCTCTTCAGTTTCT+TGG | 0.209041 | 4.4:-49746834 | MS.gene88211:CDS |
TCAAGTGTTGCAGAAGATTT+AGG | 0.221551 | 4.4:-49751145 | MS.gene88211:CDS |
CTTTGCGGACAACAGTAATT+TGG | 0.260388 | 4.4:-49747868 | MS.gene88211:CDS |
CACATTCTTCAGCGGTTCTT+TGG | 0.280526 | 4.4:+49754704 | None:intergenic |
TTCTAGAATTTGTTTAATAA+AGG | 0.282297 | 4.4:+49751272 | None:intergenic |
GGTGGAGATCCAACTTTCTT+TGG | 0.305838 | 4.4:+49753207 | None:intergenic |
ATGATCTAATCAGTTTATTT+CGG | 0.307918 | 4.4:-49746700 | MS.gene88211:CDS |
CCGGTGCTCTGTAGCAATTC+AGG | 0.309146 | 4.4:+49749999 | None:intergenic |
TCCACCCCTTACAAATATTC+AGG | 0.348535 | 4.4:-49753190 | MS.gene88211:intron |
TGGCATCATATGACACCTTT+GGG | 0.352355 | 4.4:-49752198 | MS.gene88211:CDS |
TGGTTGCAGGGATGGTTGCC+AGG | 0.354272 | 4.4:-49752268 | MS.gene88211:intron |
GGACAATACAATCTGCTGTT+TGG | 0.356916 | 4.4:-49751982 | MS.gene88211:CDS |
GATGAAGACGAGTGCGATTA+CGG | 0.357448 | 4.4:+49756343 | None:intergenic |
GCTCATGGGAAAATGATCTA+TGG | 0.378313 | 4.4:-49751323 | MS.gene88211:CDS |
AGCACCGGTGGTTTGGTTGA+TGG | 0.380580 | 4.4:-49749984 | MS.gene88211:CDS |
CGGGTTCCATTGTAGTTGTA+AGG | 0.382485 | 4.4:+49751943 | None:intergenic |
TGGTGCTACTCGAGGTGTTT+GGG | 0.382568 | 4.4:+49747803 | None:intergenic |
GATATCTCCGGTGTTCCGTT+TGG | 0.384689 | 4.4:-49756254 | MS.gene88211:CDS |
GACAATACAATCTGCTGTTT+GGG | 0.385785 | 4.4:-49751981 | MS.gene88211:CDS |
ACATCTGCTGTAGGTAGCTT+GGG | 0.388643 | 4.4:-49750084 | MS.gene88211:intron |
CTTGCTGTTGCTTCTAGTGT+TGG | 0.389075 | 4.4:-49746867 | MS.gene88211:CDS |
GACATCTGCTGTAGGTAGCT+TGG | 0.390955 | 4.4:-49750085 | MS.gene88211:intron |
TTGTATTGTCCTCTAGTCTT+CGG | 0.391977 | 4.4:+49751994 | None:intergenic |
CAAACACCTGAATATTTGTA+AGG | 0.392964 | 4.4:+49753184 | None:intergenic |
GCTATTTGCTTAGATAGTAT+TGG | 0.394414 | 4.4:-49751345 | MS.gene88211:CDS |
GTGGCATCATATGACACCTT+TGG | 0.400492 | 4.4:-49752199 | MS.gene88211:CDS |
TTGCTGTTGCTTCTAGTGTT+GGG | 0.402441 | 4.4:-49746866 | MS.gene88211:CDS |
ATTACCCACCATTGCGATAG+TGG | 0.410780 | 4.4:-49752218 | MS.gene88211:CDS |
TTGCAACGAGAAGTACTAGA+TGG | 0.413013 | 4.4:-49747316 | MS.gene88211:CDS |
GCTACAGAGCACCGGTGGTT+TGG | 0.416449 | 4.4:-49749991 | MS.gene88211:CDS |
ATGGTGCTACTCGAGGTGTT+TGG | 0.422904 | 4.4:+49747802 | None:intergenic |
TCCTCAAAAGCAAAATAAAC+AGG | 0.426831 | 4.4:+49753570 | None:intergenic |
TATTGGTGGTAGCAAGCCTC+TGG | 0.428171 | 4.4:-49754805 | MS.gene88211:CDS |
CTCAACATGTCATTTGTTCA+AGG | 0.432371 | 4.4:-49756134 | MS.gene88211:intron |
AGCAAAGCTGAACATATATC+AGG | 0.437609 | 4.4:-49747266 | MS.gene88211:intron |
AACAGGATGTATCACCTTAC+GGG | 0.437949 | 4.4:+49751924 | None:intergenic |
ATCCTTCTTACATTCGATCA+TGG | 0.439584 | 4.4:-49747839 | MS.gene88211:CDS |
TCCAACTTTCTTTGGTTCAG+TGG | 0.446635 | 4.4:+49753215 | None:intergenic |
CCGGTGGTTTGGTTGATGGC+AGG | 0.449964 | 4.4:-49749980 | MS.gene88211:intron |
ATTGGTGGTAGCAAGCCTCT+GGG | 0.454869 | 4.4:-49754804 | MS.gene88211:CDS |
TCTTATGCTTCAGATTAACT+TGG | 0.460383 | 4.4:+49751119 | None:intergenic |
CTTAGATAGTATTGGCTCAT+GGG | 0.470218 | 4.4:-49751337 | MS.gene88211:CDS |
CTGCTGTTTGGGCTAACGTC+TGG | 0.478814 | 4.4:-49751970 | MS.gene88211:CDS |
TGGTGGTAGCAAGCCTCTGG+GGG | 0.481056 | 4.4:-49754802 | MS.gene88211:CDS |
GCTTAGATAGTATTGGCTCA+TGG | 0.482039 | 4.4:-49751338 | MS.gene88211:CDS |
TGACACCTTTGGGGCTGCTC+CGG | 0.485813 | 4.4:-49752188 | MS.gene88211:intron |
GCCACTGAACCAAAGAAAGT+TGG | 0.489173 | 4.4:-49753216 | MS.gene88211:CDS |
TCGTTGCAATTTAACTTCAT+CGG | 0.491546 | 4.4:+49747330 | None:intergenic |
AAATTTACTCACAGGTAAGT+TGG | 0.502805 | 4.4:+49754650 | None:intergenic |
CTGTTTGGGCTAACGTCTGG+TGG | 0.508872 | 4.4:-49751967 | MS.gene88211:CDS |
AGTACGAGAGAGATCAGCAC+TGG | 0.516095 | 4.4:+49756181 | None:intergenic |
TCACCATCTGTCTTCAGCCC+TGG | 0.516595 | 4.4:+49752250 | None:intergenic |
CCGCCAGTAGTTGCAGTAGC+AGG | 0.521090 | 4.4:+49753492 | None:intergenic |
AAGCATATTTATGGGCATCA+AGG | 0.529020 | 4.4:-49747906 | MS.gene88211:CDS |
GGTTGCAGGGATGGTTGCCA+GGG | 0.530391 | 4.4:-49752267 | MS.gene88211:intron |
ACGAGATCCAAACGGAACAC+CGG | 0.533618 | 4.4:+49756247 | None:intergenic |
CAGCCTGCTACTGCAACTAC+TGG | 0.535144 | 4.4:-49753495 | MS.gene88211:CDS |
AACCATGATCGAATGTAAGA+AGG | 0.541676 | 4.4:+49747837 | None:intergenic |
GCGAGTAGTAATCATGATGA+TGG | 0.542254 | 4.4:-49754729 | MS.gene88211:CDS |
ACTTGTACGACAGAGTATAT+TGG | 0.551265 | 4.4:-49754822 | MS.gene88211:intron |
ACCTGAATATTTGTAAGGGG+TGG | 0.552902 | 4.4:+49753189 | None:intergenic |
CACCCTCTCTGAACTCTCTA+CGG | 0.557086 | 4.4:-49750024 | MS.gene88211:CDS |
CGGAGTCGAAGAGGATTTCG+CGG | 0.558974 | 4.4:+49756363 | None:intergenic |
ATCAAGAAGAATGATGCCTC+TGG | 0.560007 | 4.4:-49753519 | MS.gene88211:CDS |
TGATGCCACTATCGCAATGG+TGG | 0.566504 | 4.4:+49752213 | None:intergenic |
ATCTAATCAGTTTATTTCGG+CGG | 0.568543 | 4.4:-49746697 | MS.gene88211:CDS |
CAGCAAGTCAAACGTGACAC+TGG | 0.568984 | 4.4:+49746883 | None:intergenic |
AAACACCTGAATATTTGTAA+GGG | 0.570541 | 4.4:+49753185 | None:intergenic |
AAAGAACGTACAGATCTTTG+CGG | 0.571521 | 4.4:-49747883 | MS.gene88211:CDS |
CTTATCCAATACGATATCTC+CGG | 0.573897 | 4.4:-49756266 | MS.gene88211:CDS |
TATTCGAATCCGAAGACTAG+AGG | 0.576654 | 4.4:-49752003 | MS.gene88211:CDS |
CTGCTACTGCAACTACTGGC+GGG | 0.584909 | 4.4:-49753491 | MS.gene88211:intron |
AAGAGGATTTCGCGGTTGCG+AGG | 0.587745 | 4.4:+49756371 | None:intergenic |
CGAGTAGTAATCATGATGAT+GGG | 0.590493 | 4.4:-49754728 | MS.gene88211:CDS |
GGAAGCGATAGCAATGGAAG+TGG | 0.595409 | 4.4:-49752069 | MS.gene88211:CDS |
CAACTACAATGGAACCCGTA+AGG | 0.596945 | 4.4:-49751938 | MS.gene88211:intron |
TGCAACGAGAAGTACTAGAT+GGG | 0.597528 | 4.4:-49747315 | MS.gene88211:CDS |
CGTAGAGAGTTCAGAGAGGG+TGG | 0.599324 | 4.4:+49750025 | None:intergenic |
GAACACCGGAGATATCGTAT+TGG | 0.602447 | 4.4:+49756261 | None:intergenic |
TGTTTGGGCTAACGTCTGGT+GGG | 0.605689 | 4.4:-49751966 | MS.gene88211:CDS |
TTGGTGGTAGCAAGCCTCTG+GGG | 0.607148 | 4.4:-49754803 | MS.gene88211:CDS |
CTAGCAAGACGAGATCCAAA+CGG | 0.609460 | 4.4:+49756239 | None:intergenic |
GTGCGATTACGGAGTCGAAG+AGG | 0.609499 | 4.4:+49756354 | None:intergenic |
TGCAGTAGCAGGCTGACCAG+AGG | 0.611293 | 4.4:+49753503 | None:intergenic |
GGTGGTAGCAAGCCTCTGGG+GGG | 0.611979 | 4.4:-49754801 | MS.gene88211:CDS |
GCCTGCGTCGACCTCTGTGA+CGG | 0.615505 | 4.4:-49756314 | MS.gene88211:CDS |
CGAAATGAAGAGAAGCGGCA+TGG | 0.615550 | 4.4:+49756207 | None:intergenic |
TAATTGTAGGCGTTATCAGT+GGG | 0.618232 | 4.4:-49752090 | MS.gene88211:intron |
GGTGGGCCTTACAACTACAA+TGG | 0.619306 | 4.4:-49751949 | MS.gene88211:CDS |
TGCCGTAGAGAGTTCAGAGA+GGG | 0.620583 | 4.4:+49750022 | None:intergenic |
AGAACCGCTGAAGAATGTGT+TGG | 0.621201 | 4.4:-49754700 | MS.gene88211:CDS |
CCTGCCATCAACCAAACCAC+CGG | 0.622459 | 4.4:+49749980 | None:intergenic |
CTTCTTGATATCCAATAACA+CGG | 0.623420 | 4.4:+49753533 | None:intergenic |
AGATATCGTATTGGATAAGA+CGG | 0.626065 | 4.4:+49756270 | None:intergenic |
AACACCTGAATATTTGTAAG+GGG | 0.627059 | 4.4:+49753186 | None:intergenic |
GCCGTCACAGAGGTCGACGC+AGG | 0.628037 | 4.4:+49756313 | None:intergenic |
GTAATTGTAGGCGTTATCAG+TGG | 0.631414 | 4.4:-49752091 | MS.gene88211:intron |
CCTGAATTGCTACAGAGCAC+CGG | 0.633915 | 4.4:-49749999 | MS.gene88211:CDS |
ACATACCGGAGCAGCCCCAA+AGG | 0.637663 | 4.4:+49752183 | None:intergenic |
GGCATCATATGACACCTTTG+GGG | 0.639014 | 4.4:-49752197 | MS.gene88211:CDS |
ACTAATTGCTGAGTCTCTTG+CGG | 0.641944 | 4.4:-49749844 | MS.gene88211:intron |
CCTGCTACTGCAACTACTGG+CGG | 0.643000 | 4.4:-49753492 | MS.gene88211:CDS |
TGTACGACAGAGTATATTGG+TGG | 0.643856 | 4.4:-49754819 | MS.gene88211:intron |
GATGCCACTATCGCAATGGT+GGG | 0.644935 | 4.4:+49752214 | None:intergenic |
TAGCAATGGAAGTGGCATTG+TGG | 0.650973 | 4.4:-49752061 | MS.gene88211:CDS |
GGGAGCGAAATGAAGAGAAG+CGG | 0.652359 | 4.4:+49756202 | None:intergenic |
TCATCCAACACATTCTTCAG+CGG | 0.659873 | 4.4:+49754696 | None:intergenic |
AGAGGTCGACGCAGGCGACG+AGG | 0.660068 | 4.4:+49756321 | None:intergenic |
GAATTGCTACAGAGCACCGG+TGG | 0.660576 | 4.4:-49749996 | MS.gene88211:CDS |
TTGCCAGGGCTGAAGACAGA+TGG | 0.664980 | 4.4:-49752253 | MS.gene88211:CDS |
CTACGGTGGCGCCGTCACAG+AGG | 0.667503 | 4.4:+49756303 | None:intergenic |
GACATGTTGAGCTCACGAAG+AGG | 0.668393 | 4.4:+49756146 | None:intergenic |
AAGACGGTAAACATCGACTA+CGG | 0.671668 | 4.4:+49756286 | None:intergenic |
GTTTCTTGGTCATCACTACG+AGG | 0.684593 | 4.4:-49746820 | MS.gene88211:CDS |
TTTCTTGGTCATCACTACGA+GGG | 0.687354 | 4.4:-49746819 | MS.gene88211:intron |
GTACGAGAGAGATCAGCACT+GGG | 0.694728 | 4.4:+49756182 | None:intergenic |
ATATGATGCCACTATCGCAA+TGG | 0.698292 | 4.4:+49752210 | None:intergenic |
TCAGTGGGAAGCGATAGCAA+TGG | 0.705355 | 4.4:-49752075 | MS.gene88211:CDS |
ACGGTAAACATCGACTACGG+TGG | 0.743044 | 4.4:+49756289 | None:intergenic |
GTGCCGTAGAGAGTTCAGAG+AGG | 0.752779 | 4.4:+49750021 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 49746667 | 49756414 | 49746667 | ID=MS.gene88211 |
chr4.4 | mRNA | 49746667 | 49756414 | 49746667 | ID=MS.gene88211.t1;Parent=MS.gene88211 |
chr4.4 | exon | 49756135 | 49756414 | 49756135 | ID=MS.gene88211.t1.exon1;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49756135 | 49756414 | 49756135 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49754662 | 49754831 | 49754662 | ID=MS.gene88211.t1.exon2;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49754662 | 49754831 | 49754662 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49753492 | 49753595 | 49753492 | ID=MS.gene88211.t1.exon3;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49753492 | 49753595 | 49753492 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49753191 | 49753257 | 49753191 | ID=MS.gene88211.t1.exon4;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49753191 | 49753257 | 49753191 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49752189 | 49752281 | 49752189 | ID=MS.gene88211.t1.exon5;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49752189 | 49752281 | 49752189 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49751939 | 49752103 | 49751939 | ID=MS.gene88211.t1.exon6;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49751939 | 49752103 | 49751939 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49751272 | 49751412 | 49751272 | ID=MS.gene88211.t1.exon7;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49751272 | 49751412 | 49751272 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49751096 | 49751173 | 49751096 | ID=MS.gene88211.t1.exon8;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49751096 | 49751173 | 49751096 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49749981 | 49750093 | 49749981 | ID=MS.gene88211.t1.exon9;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49749981 | 49750093 | 49749981 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49749845 | 49749905 | 49749845 | ID=MS.gene88211.t1.exon10;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49749845 | 49749905 | 49749845 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49747761 | 49747928 | 49747761 | ID=MS.gene88211.t1.exon11;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49747761 | 49747928 | 49747761 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49747267 | 49747368 | 49747267 | ID=MS.gene88211.t1.exon12;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49747267 | 49747368 | 49747267 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49746820 | 49746909 | 49746820 | ID=MS.gene88211.t1.exon13;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49746820 | 49746909 | 49746820 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
chr4.4 | exon | 49746667 | 49746729 | 49746667 | ID=MS.gene88211.t1.exon14;Parent=MS.gene88211.t1 |
chr4.4 | CDS | 49746667 | 49746729 | 49746667 | ID=cds.MS.gene88211.t1;Parent=MS.gene88211.t1 |
Gene Sequence |
Protein sequence |