Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28821.t1 | XP_003625987.2 | 98.3 | 1196 | 19 | 1 | 1 | 1195 | 1 | 1196 | 0.00E+00 | 2355.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28821.t1 | Q6GQT9 | 29.5 | 1259 | 762 | 35 | 6 | 1194 | 8 | 1211 | 1.7e-144 | 515.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28821.t1 | G7KTM5 | 98.3 | 1196 | 19 | 1 | 1 | 1195 | 1 | 1196 | 0.0e+00 | 2355.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene28821 | MS.gene66726 | PPI |
| MS.gene044787 | MS.gene28821 | PPI |
| MS.gene88211 | MS.gene28821 | PPI |
| MS.gene28821 | MS.gene03874 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28821.t1 | MTR_7g109730 | 98.328 | 1196 | 19 | 1 | 1 | 1195 | 1 | 1196 | 0.0 | 2405 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28821.t1 | AT3G62360 | 64.322 | 1194 | 413 | 6 | 8 | 1195 | 11 | 1197 | 0.0 | 1595 |
| MS.gene28821.t1 | AT3G62360 | 62.745 | 1224 | 413 | 7 | 8 | 1195 | 11 | 1227 | 0.0 | 1581 |
Find 278 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGTCTCGCCTCCTCTTTC+TGG | 0.156683 | 7.4:-5770062 | MS.gene28821:CDS |
| TCCTTTGTAATTAAAGTTAA+TGG | 0.170602 | 7.4:-5786196 | MS.gene28821:CDS |
| TGTTGATGCTTAACATTAAC+TGG | 0.181984 | 7.4:+5778028 | None:intergenic |
| ATTGACTCATGTGTCTTCTT+TGG | 0.185010 | 7.4:-5772174 | MS.gene28821:CDS |
| TCTTCTATTGAAGCCATATT+TGG | 0.188138 | 7.4:+5775201 | None:intergenic |
| CTCTTTCTGGTGTTCATATC+AGG | 0.197336 | 7.4:-5770049 | MS.gene28821:CDS |
| CTTGAAGTTGATGTGGTTCC+CGG | 0.219229 | 7.4:+5764528 | None:intergenic |
| GTTATTCTTGTAGGTGGAAT+TGG | 0.221904 | 7.4:-5779096 | MS.gene28821:intron |
| TTTGGCATCCGTTTGTTTCC+TGG | 0.227971 | 7.4:+5786822 | None:intergenic |
| ATGCTTCTTCCTTGCTTCTA+TGG | 0.234325 | 7.4:+5775415 | None:intergenic |
| TATAGAAACAACTCAGTATC+TGG | 0.258710 | 7.4:-5768254 | MS.gene28821:CDS |
| GCATTACAAGTTCAAGATAT+TGG | 0.260827 | 7.4:-5775396 | MS.gene28821:CDS |
| TTCAACTGAAACTCCTCCTT+TGG | 0.261974 | 7.4:+5765522 | None:intergenic |
| TGCTCAGGTATTGCCAAATA+TGG | 0.266920 | 7.4:-5775214 | MS.gene28821:intron |
| GGACAAATAAATGTCCTTTC+CGG | 0.267562 | 7.4:-5771971 | MS.gene28821:CDS |
| GCTTCTGCTGATTCCATCTA+TGG | 0.268002 | 7.4:-5787058 | MS.gene28821:CDS |
| GTTACTTACATGATGTTCTC+TGG | 0.268353 | 7.4:+5770246 | None:intergenic |
| GGAGAAAAGCATCTTATTAA+AGG | 0.271049 | 7.4:-5771992 | MS.gene28821:CDS |
| AAAACTAAATTCATGTATTC+CGG | 0.272345 | 7.4:+5772197 | None:intergenic |
| TCTTCCATGGTCACTGATTC+GGG | 0.276213 | 7.4:+5772509 | None:intergenic |
| ATGCTATCAAAGTCGCTAAA+AGG | 0.278501 | 7.4:-5765408 | MS.gene28821:CDS |
| TTGACTCATGTGTCTTCTTT+GGG | 0.279133 | 7.4:-5772173 | MS.gene28821:CDS |
| GGCTTAGTCACTCTGTTATC+TGG | 0.280904 | 7.4:-5765550 | MS.gene28821:CDS |
| ATAAATTCTTACAGTGCTAT+TGG | 0.282828 | 7.4:-5765571 | MS.gene28821:intron |
| TTCCAGGGAAACCCTATATT+AGG | 0.283328 | 7.4:-5778674 | MS.gene28821:intron |
| CTGTCTTTGAGTATTCTGTT+TGG | 0.284849 | 7.4:-5771832 | MS.gene28821:CDS |
| ATGATCTTTGTGGTTTAGTT+AGG | 0.292647 | 7.4:-5775161 | MS.gene28821:CDS |
| CAGTGACCATGGAAGATAAT+TGG | 0.300405 | 7.4:-5772502 | MS.gene28821:CDS |
| CAAGATATTGGAGAATTATA+TGG | 0.302070 | 7.4:-5775384 | MS.gene28821:intron |
| TGTTAACTGTTACAGGTAAC+TGG | 0.308644 | 7.4:-5776328 | MS.gene28821:intron |
| GAAACAAACGGATGCCAAAT+TGG | 0.314612 | 7.4:-5786818 | MS.gene28821:CDS |
| TGGAATTGGGCTTTGGAAAT+GGG | 0.315488 | 7.4:-5779082 | MS.gene28821:CDS |
| ATCTTCCATGGTCACTGATT+CGG | 0.315998 | 7.4:+5772508 | None:intergenic |
| CTCTGTAGGTTCTCTATATC+TGG | 0.316967 | 7.4:-5785783 | MS.gene28821:intron |
| TTTAATGTCTAGGTTCTTCC+TGG | 0.320833 | 7.4:-5774288 | MS.gene28821:intron |
| TGTCTTTGAGTATTCTGTTT+GGG | 0.321332 | 7.4:-5771831 | MS.gene28821:CDS |
| TTGTAGCCCATCCATCTAAA+AGG | 0.322595 | 7.4:-5772013 | MS.gene28821:intron |
| GTGGAATTGGGCTTTGGAAA+TGG | 0.325253 | 7.4:-5779083 | MS.gene28821:CDS |
| AATATATGGACTCCTAATAT+AGG | 0.326208 | 7.4:+5778662 | None:intergenic |
| GACATGTGAATAATCCAATT+TGG | 0.330019 | 7.4:+5786804 | None:intergenic |
| TGAACTAGTGCCCTACTATA+AGG | 0.331374 | 7.4:-5778089 | MS.gene28821:CDS |
| CCTCTGAATACAAGAATATA+TGG | 0.332768 | 7.4:+5778648 | None:intergenic |
| AGTCGCTAAAAGGGATGTTA+TGG | 0.333306 | 7.4:-5765398 | MS.gene28821:CDS |
| AACTGAGGATATCAAGGGTT+TGG | 0.335214 | 7.4:-5765235 | MS.gene28821:CDS |
| ACTTGGAAGAAGTTCGAAAT+TGG | 0.340693 | 7.4:+5765069 | None:intergenic |
| TCCAGATTCTCTTTCTGTTA+AGG | 0.346413 | 7.4:-5765350 | MS.gene28821:intron |
| GATATGAAAGTTGAAGTTAA+AGG | 0.347337 | 7.4:-5779265 | MS.gene28821:CDS |
| CAAGCAATTGAGCTCGAATC+AGG | 0.350823 | 7.4:-5767739 | MS.gene28821:CDS |
| CATGAGTCCAGCAGCATTAT+CGG | 0.352438 | 7.4:+5774233 | None:intergenic |
| GTATTTGATAGTTTGTTTCC+TGG | 0.354735 | 7.4:-5768215 | MS.gene28821:CDS |
| ATCGCAGGCGAGTTCATCTT+TGG | 0.358289 | 7.4:-5786851 | MS.gene28821:intron |
| AGGCCACGCGAGTAGCTTAC+AGG | 0.361880 | 7.4:-5767693 | MS.gene28821:intron |
| AAGAAACAAACAGATGGAAA+TGG | 0.362628 | 7.4:-5774991 | MS.gene28821:CDS |
| CATATATGTGTTGAATTTCC+CGG | 0.363064 | 7.4:-5772216 | MS.gene28821:CDS |
| TTATTCTTGTAGGTGGAATT+GGG | 0.367599 | 7.4:-5779095 | MS.gene28821:intron |
| TTTCCCGTGGGACTTGAGTA+TGG | 0.368060 | 7.4:+5771871 | None:intergenic |
| CAACTTACAATTGTCATATC+TGG | 0.370044 | 7.4:+5765192 | None:intergenic |
| GTTGAACTATTGTCTCCTTC+TGG | 0.372002 | 7.4:-5785693 | MS.gene28821:CDS |
| TTATCTTTGAGTGGTGATAA+TGG | 0.375443 | 7.4:-5768278 | MS.gene28821:CDS |
| CAACTGTGAATTTGAAGATT+CGG | 0.376310 | 7.4:-5772343 | MS.gene28821:CDS |
| TTGATAGCATAGACAGTATC+AGG | 0.378590 | 7.4:+5765421 | None:intergenic |
| TCAACTGAAACTCCTCCTTT+GGG | 0.387705 | 7.4:+5765523 | None:intergenic |
| TGATGTTGGTTATAATGTTC+AGG | 0.391109 | 7.4:-5769919 | MS.gene28821:CDS |
| ACATTAACTGGGACACTAGA+TGG | 0.394404 | 7.4:+5778040 | None:intergenic |
| CACAAAGGAGCCATCAGTTC+CGG | 0.394925 | 7.4:+5769959 | None:intergenic |
| ACCTTAACAGAAAGAGAATC+TGG | 0.399447 | 7.4:+5765349 | None:intergenic |
| TCTATATCTGGTAGAGTTGT+GGG | 0.404597 | 7.4:-5785771 | MS.gene28821:CDS |
| TTGTTTACAAATGTAATTCC+AGG | 0.405641 | 7.4:-5785627 | MS.gene28821:intron |
| GCAATTATAAGAGGAAATAC+TGG | 0.406420 | 7.4:+5764730 | None:intergenic |
| AAATGGGAATTTCTGCTTTG+AGG | 0.407460 | 7.4:-5774974 | MS.gene28821:intron |
| GAATCCACCGCAGCCATAGA+TGG | 0.409957 | 7.4:+5787045 | None:intergenic |
| AAGAAATAACAAACCTTCTC+AGG | 0.410403 | 7.4:+5786151 | None:intergenic |
| AAATTCACAGTTGACCCATC+TGG | 0.413826 | 7.4:+5772353 | None:intergenic |
| TGTTTGCAAGGTTCTGCTAA+TGG | 0.419182 | 7.4:-5778608 | MS.gene28821:CDS |
| ATCTCCACTCATGATGTTGA+TGG | 0.419839 | 7.4:-5772389 | MS.gene28821:CDS |
| GTTATCATTTAAAACAAGTT+GGG | 0.421416 | 7.4:-5768388 | MS.gene28821:CDS |
| TTGTAGGTGGAATTGGGCTT+TGG | 0.422980 | 7.4:-5779089 | MS.gene28821:intron |
| ATTGTAAGTTGTCATGTTGA+AGG | 0.424855 | 7.4:-5765180 | MS.gene28821:CDS |
| ATATATGGACTCCTAATATA+GGG | 0.425298 | 7.4:+5778663 | None:intergenic |
| CGGAACTGATGGCTCCTTTG+TGG | 0.426816 | 7.4:-5769958 | MS.gene28821:CDS |
| AACTGTGAATTTGAAGATTC+GGG | 0.426894 | 7.4:-5772342 | MS.gene28821:intron |
| TGGCTGCGGTGGATTCGTTC+AGG | 0.426968 | 7.4:-5787038 | MS.gene28821:intron |
| AACATCTGATGGTAGAAATC+AGG | 0.427976 | 7.4:-5765134 | MS.gene28821:CDS |
| CTCTATATCTGGTAGAGTTG+TGG | 0.428279 | 7.4:-5785772 | MS.gene28821:CDS |
| AATTGACACATCGAATCTAT+TGG | 0.432871 | 7.4:-5772136 | MS.gene28821:intron |
| ACTAGAAATGCAATTATAAG+AGG | 0.433487 | 7.4:+5764721 | None:intergenic |
| AAACTAAATTCATGTATTCC+GGG | 0.438085 | 7.4:+5772198 | None:intergenic |
| ATGTGGGCCCACTGAGATAC+AGG | 0.441245 | 7.4:-5764930 | MS.gene28821:CDS |
| GAAACCGTAACAGATTCATC+TGG | 0.443386 | 7.4:-5765469 | MS.gene28821:CDS |
| TATTAGGTGGCTTTGACTCA+TGG | 0.446176 | 7.4:-5775036 | MS.gene28821:intron |
| CAGTATCGTACCTTCAAAAC+AGG | 0.446959 | 7.4:+5768176 | None:intergenic |
| TCGAGCTCAATTGCTTGTGC+TGG | 0.446973 | 7.4:+5767745 | None:intergenic |
| GGAAGAAGTTCGAAATTGGC+AGG | 0.447899 | 7.4:+5765073 | None:intergenic |
| GGTTATCATTTAAAACAAGT+TGG | 0.450986 | 7.4:-5768389 | MS.gene28821:CDS |
| GTTGATGTGGTTCCCGGCGC+AGG | 0.451338 | 7.4:+5764534 | None:intergenic |
| ATGTTATTCCTGGAAAATAC+AGG | 0.453422 | 7.4:-5772731 | MS.gene28821:CDS |
| TCCTTTAGTTGTCAGAAGCT+TGG | 0.456340 | 7.4:-5768359 | MS.gene28821:CDS |
| TGTATCTCAGTGGGCCCACA+TGG | 0.456400 | 7.4:+5764932 | None:intergenic |
| CGGTTGGGTGTATATATTGA+AGG | 0.456654 | 7.4:-5770086 | MS.gene28821:CDS |
| GGACGCAGATAGAACATTCC+AGG | 0.457889 | 7.4:+5768197 | None:intergenic |
| GTTGTTGATATTTATCATGA+AGG | 0.462716 | 7.4:-5771920 | MS.gene28821:CDS |
| GAACTAGTGCCCTACTATAA+GGG | 0.463860 | 7.4:-5778088 | MS.gene28821:CDS |
| TGTAAGCTACTCGCGTGGCC+TGG | 0.464472 | 7.4:+5767695 | None:intergenic |
| ACCAAGCTTCTGACAACTAA+AGG | 0.466079 | 7.4:+5768358 | None:intergenic |
| GTCGCTAAAAGGGATGTTAT+GGG | 0.466092 | 7.4:-5765397 | MS.gene28821:CDS |
| GGTAGAGTTGTGGGAGCTGC+AGG | 0.467417 | 7.4:-5785762 | MS.gene28821:CDS |
| AGAAACAAACAGATGGAAAT+GGG | 0.467802 | 7.4:-5774990 | MS.gene28821:CDS |
| ATGGACCTGATGGGTGGTCA+TGG | 0.468727 | 7.4:-5786177 | MS.gene28821:CDS |
| TGCTATCAAAGTCGCTAAAA+GGG | 0.468824 | 7.4:-5765407 | MS.gene28821:CDS |
| ATAAGAGGAAATACTGGTGC+TGG | 0.469643 | 7.4:+5764736 | None:intergenic |
| ATTCCCAGATGAATCTGTTA+CGG | 0.470421 | 7.4:+5765465 | None:intergenic |
| GCCGTTTCATATGATCTTTG+TGG | 0.471905 | 7.4:-5775171 | MS.gene28821:CDS |
| ATCTGTGACTCTTGTCAAGC+AGG | 0.472527 | 7.4:-5772823 | MS.gene28821:CDS |
| CAAATCTAAGTGAGCTTGAT+GGG | 0.474246 | 7.4:+5764998 | None:intergenic |
| AAAAGCTTACCTTTGTTCCT+CGG | 0.476231 | 7.4:-5771796 | MS.gene28821:CDS |
| TTCGAACTTCTTCCAAGTGA+AGG | 0.478479 | 7.4:-5765064 | MS.gene28821:CDS |
| GAAATTCAACACATATATGT+TGG | 0.479231 | 7.4:+5772220 | None:intergenic |
| TTACTTACATGATGTTCTCT+GGG | 0.479658 | 7.4:+5770247 | None:intergenic |
| TATTCTGTTTGGGCCAATCC+AGG | 0.481303 | 7.4:-5771821 | MS.gene28821:CDS |
| TCAGTCTTGACTTCATCATC+AGG | 0.482782 | 7.4:-5785657 | MS.gene28821:CDS |
| AGGTTATTACAAGCTTGATC+AGG | 0.485867 | 7.4:-5776206 | MS.gene28821:intron |
| TCAAATCTAAGTGAGCTTGA+TGG | 0.486532 | 7.4:+5764997 | None:intergenic |
| GACCAGATCGAAGTTGTAGA+AGG | 0.489153 | 7.4:+5765022 | None:intergenic |
| AAATTCAACACATATATGTT+GGG | 0.489978 | 7.4:+5772221 | None:intergenic |
| TCTTTGTGGTTTAGTTAGGA+TGG | 0.491868 | 7.4:-5775157 | MS.gene28821:CDS |
| AAAGCTTACCTTTGTTCCTC+GGG | 0.492249 | 7.4:-5771795 | MS.gene28821:CDS |
| GGAATTGGGCTTTGGAAATG+GGG | 0.493886 | 7.4:-5779081 | MS.gene28821:CDS |
| GGAATAAAATAGTACCCGTT+AGG | 0.496115 | 7.4:+5786347 | None:intergenic |
| GCTTCAAACCGTGGATGGAT+TGG | 0.500914 | 7.4:-5786393 | MS.gene28821:CDS |
| ATGAGTCCAGCAGCATTATC+GGG | 0.503144 | 7.4:+5774234 | None:intergenic |
| CAGTGGGTCTGTTGTTGCAC+AGG | 0.503400 | 7.4:-5779021 | MS.gene28821:intron |
| ACTGATGGCTCCTTTGTGGC+AGG | 0.503999 | 7.4:-5769954 | MS.gene28821:CDS |
| TCCATTAACTTTAATTACAA+AGG | 0.504858 | 7.4:+5786195 | None:intergenic |
| GGTTGGAACTGAGGATATCA+AGG | 0.505962 | 7.4:-5765241 | MS.gene28821:CDS |
| ATAGAAACAACTCAGTATCT+GGG | 0.506259 | 7.4:-5768253 | MS.gene28821:CDS |
| ATCGCAACATCAATATAAGA+TGG | 0.506969 | 7.4:+5774204 | None:intergenic |
| GATTGATGATCAGCTGAAGC+AGG | 0.507779 | 7.4:-5764908 | MS.gene28821:intron |
| AACCGTGGATGGATTGGTAA+AGG | 0.509918 | 7.4:-5786387 | MS.gene28821:CDS |
| TCAGTTCTGTTATCTTTGAG+TGG | 0.510093 | 7.4:-5768287 | MS.gene28821:CDS |
| AACAACTCAGTATCTGGGGC+TGG | 0.511207 | 7.4:-5768248 | MS.gene28821:CDS |
| GAACACAATGTGCTCCTAAC+GGG | 0.513649 | 7.4:-5786361 | MS.gene28821:CDS |
| AGTTGTCATGTTGAAGGAAA+CGG | 0.513703 | 7.4:-5765174 | MS.gene28821:CDS |
| GGATCCCATGACCACCCATC+AGG | 0.514368 | 7.4:+5786172 | None:intergenic |
| GCTGGAGACAGCAGTATCAC+TGG | 0.515052 | 7.4:-5770017 | MS.gene28821:CDS |
| TCGAACTTCTTCCAAGTGAA+GGG | 0.516414 | 7.4:-5765063 | MS.gene28821:CDS |
| GCTACTCCCGATAATGCTGC+TGG | 0.517169 | 7.4:-5774240 | MS.gene28821:CDS |
| GATATTTATCATGAAGGAGC+TGG | 0.518777 | 7.4:-5771914 | MS.gene28821:CDS |
| AGCTCAATTGCTTGTGCTGG+AGG | 0.519171 | 7.4:+5767748 | None:intergenic |
| CCATGGAAGATAATTGGTGC+TGG | 0.519866 | 7.4:-5772496 | MS.gene28821:CDS |
| CACCTTCTACAACTTCGATC+TGG | 0.522791 | 7.4:-5765024 | MS.gene28821:CDS |
| AACAATTCCTTCGAAGTCCT+CGG | 0.524755 | 7.4:+5772442 | None:intergenic |
| GGTGTCAAGATCATAGTTGA+TGG | 0.525320 | 7.4:-5776256 | MS.gene28821:CDS |
| TGAAGGGCTTATCGAAGGGC+AGG | 0.529646 | 7.4:-5765047 | MS.gene28821:CDS |
| CTCAAAGATAACAGAACTGA+AGG | 0.529828 | 7.4:+5768290 | None:intergenic |
| AAGAAGTTCGAAATTGGCAG+GGG | 0.530875 | 7.4:+5765075 | None:intergenic |
| GTCCCTGGGTATAGTATCAG+TGG | 0.533507 | 7.4:-5779038 | MS.gene28821:CDS |
| GTTCATCTTTGGTGAAGTCC+AGG | 0.533922 | 7.4:-5786840 | MS.gene28821:CDS |
| ACCACAAAGATCATATGAAA+CGG | 0.534172 | 7.4:+5775170 | None:intergenic |
| GAAGCCCGGTCAGTGTCAAA+AGG | 0.534333 | 7.4:-5765502 | MS.gene28821:CDS |
| TGATATCATTGAGGTCGACT+TGG | 0.534767 | 7.4:-5764971 | MS.gene28821:CDS |
| GAAACGACCACCGGAACTGA+TGG | 0.535181 | 7.4:-5769969 | MS.gene28821:CDS |
| GTTGAGCTTCAAACCGTGGA+TGG | 0.535663 | 7.4:-5786398 | MS.gene28821:CDS |
| GGTGAAGTCCAGGAAACAAA+CGG | 0.538937 | 7.4:-5786830 | MS.gene28821:CDS |
| GTGACTCTTGTCAAGCAGGC+TGG | 0.539074 | 7.4:-5772819 | MS.gene28821:CDS |
| AGCTTCATAGATGTAAATGT+TGG | 0.539175 | 7.4:-5772467 | MS.gene28821:CDS |
| AACTCAGTATCTGGGGCTGG+AGG | 0.539419 | 7.4:-5768245 | MS.gene28821:CDS |
| ATCCTTTACCAATCCATCCA+CGG | 0.540905 | 7.4:+5786385 | None:intergenic |
| CTGAAACTCCTCCTTTGGGT+TGG | 0.542791 | 7.4:+5765527 | None:intergenic |
| TATCATGAAGGAGCTGGCGT+TGG | 0.546808 | 7.4:-5771908 | MS.gene28821:CDS |
| GAGGAGTTTCAGTTGAAGCC+CGG | 0.549081 | 7.4:-5765516 | MS.gene28821:CDS |
| TGATGGAAACGACATGGGAG+TGG | 0.550160 | 7.4:-5776281 | MS.gene28821:CDS |
| CACTATTTATCAGCATCCCC+AGG | 0.556200 | 7.4:-5764693 | MS.gene28821:intron |
| AAACAGAAATTCACTACGCT+CGG | 0.556546 | 7.4:+5772758 | None:intergenic |
| CCACAAAAGAAACAAACAGA+TGG | 0.556619 | 7.4:-5774997 | MS.gene28821:CDS |
| AGGTCTATTACTGACAATCA+AGG | 0.558543 | 7.4:-5776226 | MS.gene28821:CDS |
| CCAGCACCAATTATCTTCCA+TGG | 0.560254 | 7.4:+5772496 | None:intergenic |
| ATTTGAATCTGATATCATTG+AGG | 0.563041 | 7.4:-5764980 | MS.gene28821:CDS |
| CCTTCGATAAGCCCTTCACT+TGG | 0.563336 | 7.4:+5765052 | None:intergenic |
| CCTTTGTTCCTCGGGACTCG+AGG | 0.563826 | 7.4:-5771787 | MS.gene28821:intron |
| ATTAAAGTTAATGGACCTGA+TGG | 0.563941 | 7.4:-5786187 | MS.gene28821:CDS |
| TGGACCTGATGGGTGGTCAT+GGG | 0.566074 | 7.4:-5786176 | MS.gene28821:CDS |
| TCCCTGGGTATAGTATCAGT+GGG | 0.570104 | 7.4:-5779037 | MS.gene28821:CDS |
| TATTTGTTTCATCTTTCCCG+TGG | 0.573213 | 7.4:+5771858 | None:intergenic |
| TACGATAGACATACCTGCGC+CGG | 0.573282 | 7.4:-5764547 | MS.gene28821:CDS |
| TTATAATGTTCAGGCTTCAA+AGG | 0.574139 | 7.4:-5769910 | MS.gene28821:intron |
| CCTCGAGTCCCGAGGAACAA+AGG | 0.577692 | 7.4:+5771787 | None:intergenic |
| CCATATATTCTTGTATTCAG+AGG | 0.578070 | 7.4:-5778648 | MS.gene28821:CDS |
| TTCTGACAACTAAAGGAATG+AGG | 0.578856 | 7.4:+5768365 | None:intergenic |
| AGGCAATGCATCATGTAAGC+CGG | 0.579548 | 7.4:+5771952 | None:intergenic |
| GCTGATTCCATCTATGGCTG+CGG | 0.580408 | 7.4:-5787052 | MS.gene28821:CDS |
| GTGGGACTTGAGTATGGCCA+TGG | 0.580898 | 7.4:+5771877 | None:intergenic |
| CCAAGTGAAGGGCTTATCGA+AGG | 0.581387 | 7.4:-5765052 | MS.gene28821:CDS |
| AAGCAATTGAGCTCGAATCA+GGG | 0.581839 | 7.4:-5767738 | MS.gene28821:CDS |
| GAAGAAGTTCGAAATTGGCA+GGG | 0.582032 | 7.4:+5765074 | None:intergenic |
| TTGTGAGGAATAGTAAACAT+AGG | 0.582720 | 7.4:+5787098 | None:intergenic |
| CTGATATGAACACCAGAAAG+AGG | 0.582789 | 7.4:+5770050 | None:intergenic |
| CTGTTATCTGGCCAACCCAA+AGG | 0.584972 | 7.4:-5765538 | MS.gene28821:CDS |
| CCTGTGGTAGTTGACAATCA+AGG | 0.585283 | 7.4:-5785949 | MS.gene28821:CDS |
| TCCTGGAAAATACAGGCTTG+AGG | 0.585866 | 7.4:-5772724 | MS.gene28821:intron |
| ATGTTTCCAGGTTGGAACTG+AGG | 0.588059 | 7.4:-5765250 | MS.gene28821:intron |
| CATCAATCCTGTATCTCAGT+GGG | 0.588309 | 7.4:+5764923 | None:intergenic |
| TGAGCTTCGTAAACATCTGA+TGG | 0.589751 | 7.4:-5765145 | MS.gene28821:CDS |
| ATGCATCATGTAAGCCGGAA+AGG | 0.590807 | 7.4:+5771957 | None:intergenic |
| GATTCCATCTATGGCTGCGG+TGG | 0.592582 | 7.4:-5787049 | MS.gene28821:CDS |
| AGAACACAATGTGCTCCTAA+CGG | 0.592633 | 7.4:-5786362 | MS.gene28821:CDS |
| TGCTTCTATGGTATAGTGTG+TGG | 0.593669 | 7.4:+5775427 | None:intergenic |
| AAACCGTAACAGATTCATCT+GGG | 0.594409 | 7.4:-5765468 | MS.gene28821:CDS |
| ATTGAATGCGAACTTTCCAT+CGG | 0.594509 | 7.4:+5778544 | None:intergenic |
| ACAAGAGTCACAGATACAGA+TGG | 0.594583 | 7.4:+5772831 | None:intergenic |
| CCTTGATTGTCAACTACCAC+AGG | 0.598295 | 7.4:+5785949 | None:intergenic |
| AGTATCACTGGACTTAAAAG+TGG | 0.598637 | 7.4:-5770005 | MS.gene28821:CDS |
| AGAGTTGTGGGAGCTGCAGG+CGG | 0.599360 | 7.4:-5785759 | MS.gene28821:CDS |
| ACTCAGTATCTGGGGCTGGA+GGG | 0.601748 | 7.4:-5768244 | MS.gene28821:CDS |
| GGTCCTCTGTATGATGATGT+TGG | 0.602538 | 7.4:-5769933 | MS.gene28821:CDS |
| CTAATACTTGAAACGACCAC+CGG | 0.604363 | 7.4:-5769978 | MS.gene28821:CDS |
| GTGGTCATGGGATCCTGAGA+AGG | 0.604450 | 7.4:-5786164 | MS.gene28821:intron |
| GTTACATAAATCAACCAGAT+GGG | 0.605567 | 7.4:-5772367 | MS.gene28821:CDS |
| ACGATAGACATACCTGCGCC+GGG | 0.605634 | 7.4:-5764546 | MS.gene28821:CDS |
| GGTTACATAAATCAACCAGA+TGG | 0.607485 | 7.4:-5772368 | MS.gene28821:CDS |
| TTCCATGGTCACTGATTCGG+GGG | 0.607686 | 7.4:+5772511 | None:intergenic |
| CCCAACCGACAAGAAAATGT+AGG | 0.607780 | 7.4:+5770101 | None:intergenic |
| GCATTCAATTCAATACCTTG+TGG | 0.608043 | 7.4:-5778530 | MS.gene28821:intron |
| CACGCTGTATCAGATGCCGA+TGG | 0.609383 | 7.4:-5778560 | MS.gene28821:CDS |
| TGGAAACGACATGGGAGTGG+AGG | 0.611254 | 7.4:-5776278 | MS.gene28821:CDS |
| CTCAGATCGGAAATGTCGAT+CGG | 0.614098 | 7.4:-5787130 | None:intergenic |
| GGAAACGACATGGGAGTGGA+GGG | 0.615099 | 7.4:-5776277 | MS.gene28821:CDS |
| CTTATCTGTATAGGTTCCTG+TGG | 0.615542 | 7.4:-5785965 | MS.gene28821:intron |
| AGATGTAAATGTTGGAGCCG+AGG | 0.616032 | 7.4:-5772459 | MS.gene28821:CDS |
| TCATGTTGAAGGAAACGGTA+CGG | 0.617690 | 7.4:-5765169 | MS.gene28821:CDS |
| TGGCCATACTCAAGTCCCAC+GGG | 0.618469 | 7.4:-5771874 | MS.gene28821:CDS |
| TGTAGTTGATGGAAACGACA+TGG | 0.619360 | 7.4:-5776287 | MS.gene28821:CDS |
| GTATCTCAGTGGGCCCACAT+GGG | 0.619772 | 7.4:+5764933 | None:intergenic |
| CTGAAATTGAATAAGTTGTG+AGG | 0.620052 | 7.4:+5787083 | None:intergenic |
| ATTTGTTTCATCTTTCCCGT+GGG | 0.620563 | 7.4:+5771859 | None:intergenic |
| TCATAGTTGATGGTCATGAA+AGG | 0.623919 | 7.4:-5776246 | MS.gene28821:CDS |
| CAAGTGAAGGGCTTATCGAA+GGG | 0.624792 | 7.4:-5765051 | MS.gene28821:CDS |
| CTTCCATGGTCACTGATTCG+GGG | 0.625526 | 7.4:+5772510 | None:intergenic |
| TGAAGTTAAAGGTTCAACAC+AGG | 0.625903 | 7.4:-5779254 | MS.gene28821:intron |
| TCCGAGGTAGAATGTTTGCA+AGG | 0.626426 | 7.4:-5778620 | MS.gene28821:CDS |
| CATGGAAGATAATTGGTGCT+GGG | 0.626700 | 7.4:-5772495 | MS.gene28821:CDS |
| GTTGGAACTGAGGATATCAA+GGG | 0.626948 | 7.4:-5765240 | MS.gene28821:CDS |
| GTTGGAGCCGAGGACTTCGA+AGG | 0.629183 | 7.4:-5772449 | MS.gene28821:CDS |
| TTAAAGTTAATGGACCTGAT+GGG | 0.630255 | 7.4:-5786186 | MS.gene28821:CDS |
| AGCAATTGAGCTCGAATCAG+GGG | 0.632098 | 7.4:-5767737 | MS.gene28821:CDS |
| GTTGATGCTTAACATTAACT+GGG | 0.634397 | 7.4:+5778029 | None:intergenic |
| ACCTTGCAAACATTCTACCT+CGG | 0.635423 | 7.4:+5778619 | None:intergenic |
| GTAACCATCAACATCATGAG+TGG | 0.639513 | 7.4:+5772385 | None:intergenic |
| ACCCACTGATACTATACCCA+GGG | 0.642433 | 7.4:+5779036 | None:intergenic |
| GAAAATTCAACATTCAACAA+TGG | 0.642979 | 7.4:+5774174 | None:intergenic |
| GCTGACAAGCGATATTCACC+AGG | 0.644183 | 7.4:+5774270 | None:intergenic |
| CCGTGGTGCTGTAGTCTGCA+AGG | 0.644204 | 7.4:-5772865 | MS.gene28821:CDS |
| AAAGGAGCCATCAGTTCCGG+TGG | 0.646213 | 7.4:+5769962 | None:intergenic |
| GACCCACTGATACTATACCC+AGG | 0.649163 | 7.4:+5779035 | None:intergenic |
| TAGAAACAACTCAGTATCTG+GGG | 0.651855 | 7.4:-5768252 | MS.gene28821:CDS |
| CAGAGAGCTACTTCTTGTCG+TGG | 0.655387 | 7.4:+5778584 | None:intergenic |
| CACACTATACCATAGAAGCA+AGG | 0.657779 | 7.4:-5775424 | MS.gene28821:CDS |
| TTATCTGGCCAACCCAAAGG+AGG | 0.657923 | 7.4:-5765535 | MS.gene28821:CDS |
| TAGGCTTTGGTCAATGTCCG+TGG | 0.660231 | 7.4:-5772882 | MS.gene28821:CDS |
| TGGCGTTGGTGATAATGCCA+TGG | 0.660482 | 7.4:-5771894 | MS.gene28821:CDS |
| ATGGCCATACTCAAGTCCCA+CGG | 0.662322 | 7.4:-5771875 | MS.gene28821:CDS |
| GTAGGTTGAGCTTCAAACCG+TGG | 0.663440 | 7.4:-5786402 | MS.gene28821:intron |
| GTAGTTGATGGAAACGACAT+GGG | 0.665582 | 7.4:-5776286 | MS.gene28821:CDS |
| AAGTTAATGGACCTGATGGG+TGG | 0.666461 | 7.4:-5786183 | MS.gene28821:CDS |
| TCTGGGAATTATCGTCTGAG+AGG | 0.666597 | 7.4:-5765451 | MS.gene28821:CDS |
| GATGACACAAGATCGCCAGA+AGG | 0.666773 | 7.4:+5785678 | None:intergenic |
| TTAGTTAGGATGGTTAGTAG+CGG | 0.666821 | 7.4:-5775147 | MS.gene28821:CDS |
| TAGTAGCGGTCAGAAAGCAA+CGG | 0.675411 | 7.4:-5775133 | MS.gene28821:intron |
| CAACTTCAAGAAAAGATGCG+AGG | 0.676910 | 7.4:-5764515 | MS.gene28821:CDS |
| CAGAAATTCACTACGCTCGG+AGG | 0.677987 | 7.4:+5772761 | None:intergenic |
| GTATTCAGAGGATGTGTCCG+AGG | 0.678153 | 7.4:-5778636 | MS.gene28821:CDS |
| TCATCAATCCTGTATCTCAG+TGG | 0.679879 | 7.4:+5764922 | None:intergenic |
| ATACAGAGGACCTGCCACAA+AGG | 0.685844 | 7.4:+5769944 | None:intergenic |
| ATATGAACACCAGAAAGAGG+AGG | 0.692528 | 7.4:+5770053 | None:intergenic |
| AAACCTGTAAGCTACTCGCG+TGG | 0.699670 | 7.4:+5767690 | None:intergenic |
| AGAAGTTCGAAATTGGCAGG+GGG | 0.705475 | 7.4:+5765076 | None:intergenic |
| CCTTGCAGACTACAGCACCA+CGG | 0.708504 | 7.4:+5772865 | None:intergenic |
| TAACCAACATCATCATACAG+AGG | 0.720625 | 7.4:+5769930 | None:intergenic |
| AAAATGTACCTCGAGTCCCG+AGG | 0.736060 | 7.4:+5771779 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 5764485 | 5787140 | 5764485 | ID=MS.gene28821 |
| chr7.4 | mRNA | 5764485 | 5787140 | 5764485 | ID=MS.gene28821.t1;Parent=MS.gene28821 |
| chr7.4 | exon | 5787039 | 5787140 | 5787039 | ID=MS.gene28821.t1.exon1;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5787039 | 5787140 | 5787039 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5786801 | 5786866 | 5786801 | ID=MS.gene28821.t1.exon2;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5786801 | 5786866 | 5786801 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5786334 | 5786420 | 5786334 | ID=MS.gene28821.t1.exon3;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5786334 | 5786420 | 5786334 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5786165 | 5786221 | 5786165 | ID=MS.gene28821.t1.exon4;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5786165 | 5786221 | 5786165 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5785910 | 5785974 | 5785910 | ID=MS.gene28821.t1.exon5;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5785910 | 5785974 | 5785910 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5785628 | 5785797 | 5785628 | ID=MS.gene28821.t1.exon6;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5785628 | 5785797 | 5785628 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5779255 | 5779316 | 5779255 | ID=MS.gene28821.t1.exon7;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5779255 | 5779316 | 5779255 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5779022 | 5779105 | 5779022 | ID=MS.gene28821.t1.exon8;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5779022 | 5779105 | 5779022 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5778531 | 5778690 | 5778531 | ID=MS.gene28821.t1.exon9;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5778531 | 5778690 | 5778531 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5778003 | 5778118 | 5778003 | ID=MS.gene28821.t1.exon10;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5778003 | 5778118 | 5778003 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5776207 | 5776335 | 5776207 | ID=MS.gene28821.t1.exon11;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5776207 | 5776335 | 5776207 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5775385 | 5775456 | 5775385 | ID=MS.gene28821.t1.exon12;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5775385 | 5775456 | 5775385 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5775134 | 5775229 | 5775134 | ID=MS.gene28821.t1.exon13;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5775134 | 5775229 | 5775134 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5774975 | 5775052 | 5774975 | ID=MS.gene28821.t1.exon14;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5774975 | 5775052 | 5774975 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5774170 | 5774298 | 5774170 | ID=MS.gene28821.t1.exon15;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5774170 | 5774298 | 5774170 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5772725 | 5772901 | 5772725 | ID=MS.gene28821.t1.exon16;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5772725 | 5772901 | 5772725 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5772343 | 5772546 | 5772343 | ID=MS.gene28821.t1.exon17;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5772343 | 5772546 | 5772343 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5772137 | 5772250 | 5772137 | ID=MS.gene28821.t1.exon18;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5772137 | 5772250 | 5772137 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5771788 | 5772029 | 5771788 | ID=MS.gene28821.t1.exon19;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5771788 | 5772029 | 5771788 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5770255 | 5770300 | 5770255 | ID=MS.gene28821.t1.exon20;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5770255 | 5770300 | 5770255 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5769911 | 5770159 | 5769911 | ID=MS.gene28821.t1.exon21;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5769911 | 5770159 | 5769911 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5768187 | 5768414 | 5768187 | ID=MS.gene28821.t1.exon22;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5768187 | 5768414 | 5768187 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5767694 | 5767785 | 5767694 | ID=MS.gene28821.t1.exon23;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5767694 | 5767785 | 5767694 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5765351 | 5765579 | 5765351 | ID=MS.gene28821.t1.exon24;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5765351 | 5765579 | 5765351 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5764909 | 5765262 | 5764909 | ID=MS.gene28821.t1.exon25;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5764909 | 5765262 | 5764909 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5764694 | 5764767 | 5764694 | ID=MS.gene28821.t1.exon26;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5764694 | 5764767 | 5764694 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| chr7.4 | exon | 5764485 | 5764590 | 5764485 | ID=MS.gene28821.t1.exon27;Parent=MS.gene28821.t1 |
| chr7.4 | CDS | 5764485 | 5764590 | 5764485 | ID=cds.MS.gene28821.t1;Parent=MS.gene28821.t1 |
| Gene Sequence |
| Protein sequence |
