Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88661.t1 | XP_003610152.2 | 96.7 | 180 | 6 | 0 | 3 | 182 | 96 | 275 | 6.00E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88661.t1 | Q38910 | 72.4 | 196 | 38 | 1 | 3 | 182 | 91 | 286 | 6.4e-83 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88661.t1 | G7JD11 | 96.7 | 180 | 6 | 0 | 3 | 182 | 96 | 275 | 4.4e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene88661 | 0.833262 | 5.90E-56 | -1.69E-46 |
| MS.gene055661 | MS.gene88661 | 0.809764 | 1.61E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene88661 | 0.861036 | 1.36E-63 | -1.69E-46 |
| MS.gene056571 | MS.gene88661 | 0.818205 | 2.21E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88661.t1 | MTR_4g128570 | 96.667 | 180 | 6 | 0 | 3 | 182 | 96 | 275 | 2.33e-133 | 374 |
| MS.gene88661.t1 | MTR_7g093530 | 79.581 | 191 | 25 | 1 | 3 | 179 | 89 | 279 | 2.40e-112 | 321 |
| MS.gene88661.t1 | MTR_4g128580 | 78.788 | 198 | 24 | 1 | 3 | 182 | 91 | 288 | 5.26e-112 | 320 |
| MS.gene88661.t1 | MTR_4g128410 | 78.534 | 191 | 27 | 1 | 3 | 179 | 90 | 280 | 1.83e-109 | 314 |
| MS.gene88661.t1 | MTR_4g128590 | 74.372 | 199 | 32 | 1 | 3 | 182 | 80 | 278 | 6.59e-108 | 310 |
| MS.gene88661.t1 | MTR_4g128400 | 69.948 | 193 | 44 | 1 | 3 | 181 | 93 | 285 | 1.15e-100 | 292 |
| MS.gene88661.t1 | MTR_2g038860 | 67.839 | 199 | 45 | 1 | 3 | 182 | 91 | 289 | 1.47e-97 | 284 |
| MS.gene88661.t1 | MTR_2g038705 | 67.839 | 199 | 45 | 1 | 3 | 182 | 91 | 289 | 1.47e-97 | 284 |
| MS.gene88661.t1 | MTR_4g126920 | 66.667 | 195 | 50 | 1 | 3 | 182 | 90 | 284 | 8.49e-96 | 279 |
| MS.gene88661.t1 | MTR_3g084620 | 71.351 | 185 | 45 | 1 | 3 | 179 | 93 | 277 | 1.72e-94 | 276 |
| MS.gene88661.t1 | MTR_3g084630 | 71.351 | 185 | 45 | 1 | 3 | 179 | 93 | 277 | 2.30e-94 | 276 |
| MS.gene88661.t1 | MTR_8g081040 | 68.984 | 187 | 49 | 1 | 3 | 180 | 96 | 282 | 1.08e-93 | 274 |
| MS.gene88661.t1 | MTR_8g102220 | 65.027 | 183 | 54 | 2 | 3 | 182 | 94 | 269 | 2.48e-82 | 245 |
| MS.gene88661.t1 | MTR_8g102910 | 54.359 | 195 | 71 | 2 | 3 | 179 | 85 | 279 | 3.25e-73 | 222 |
| MS.gene88661.t1 | MTR_6g088320 | 52.821 | 195 | 74 | 2 | 3 | 179 | 89 | 283 | 5.59e-72 | 219 |
| MS.gene88661.t1 | MTR_6g033055 | 55.440 | 193 | 70 | 3 | 3 | 180 | 97 | 288 | 5.00e-70 | 214 |
| MS.gene88661.t1 | MTR_6g033085 | 55.440 | 193 | 70 | 3 | 3 | 180 | 97 | 288 | 5.76e-70 | 214 |
| MS.gene88661.t1 | MTR_7g084770 | 55.208 | 192 | 70 | 3 | 3 | 179 | 97 | 287 | 1.12e-69 | 213 |
| MS.gene88661.t1 | MTR_7g084760 | 55.208 | 192 | 70 | 3 | 3 | 179 | 97 | 287 | 1.67e-69 | 213 |
| MS.gene88661.t1 | MTR_7g084750 | 54.167 | 192 | 72 | 3 | 3 | 179 | 97 | 287 | 7.35e-69 | 211 |
| MS.gene88661.t1 | MTR_2g089140 | 50.249 | 201 | 76 | 4 | 3 | 180 | 25 | 224 | 9.19e-69 | 209 |
| MS.gene88661.t1 | MTR_2g089140 | 50.249 | 201 | 76 | 4 | 3 | 180 | 88 | 287 | 5.01e-68 | 209 |
| MS.gene88661.t1 | MTR_3g089540 | 50.532 | 188 | 82 | 1 | 3 | 179 | 95 | 282 | 5.24e-68 | 209 |
| MS.gene88661.t1 | MTR_5g091730 | 49.462 | 186 | 85 | 1 | 3 | 179 | 93 | 278 | 6.84e-67 | 206 |
| MS.gene88661.t1 | MTR_4g045853 | 49.751 | 201 | 77 | 4 | 3 | 180 | 90 | 289 | 7.30e-66 | 204 |
| MS.gene88661.t1 | MTR_1g105900 | 50.000 | 194 | 81 | 2 | 3 | 180 | 99 | 292 | 1.41e-62 | 195 |
| MS.gene88661.t1 | MTR_4g097640 | 50.538 | 186 | 77 | 4 | 11 | 182 | 106 | 290 | 2.39e-62 | 194 |
| MS.gene88661.t1 | MTR_4g097670 | 50.538 | 186 | 77 | 4 | 11 | 182 | 106 | 290 | 2.39e-62 | 194 |
| MS.gene88661.t1 | MTR_4g097700 | 50.811 | 185 | 76 | 4 | 11 | 181 | 143 | 326 | 7.33e-62 | 194 |
| MS.gene88661.t1 | MTR_8g013055 | 46.875 | 192 | 85 | 4 | 3 | 179 | 96 | 285 | 1.33e-59 | 187 |
| MS.gene88661.t1 | MTR_1g105495 | 49.468 | 188 | 78 | 3 | 11 | 182 | 111 | 297 | 1.82e-59 | 187 |
| MS.gene88661.t1 | MTR_7g056090 | 48.837 | 172 | 69 | 5 | 11 | 167 | 106 | 273 | 3.23e-48 | 158 |
| MS.gene88661.t1 | MTR_2g049030 | 44.324 | 185 | 81 | 6 | 11 | 177 | 101 | 281 | 6.00e-46 | 152 |
| MS.gene88661.t1 | MTR_7g102260 | 42.781 | 187 | 87 | 5 | 11 | 181 | 111 | 293 | 2.44e-44 | 149 |
| MS.gene88661.t1 | MTR_4g057450 | 43.316 | 187 | 86 | 5 | 9 | 179 | 122 | 304 | 1.44e-43 | 147 |
| MS.gene88661.t1 | MTR_1g063020 | 43.784 | 185 | 84 | 7 | 11 | 179 | 114 | 294 | 5.62e-43 | 145 |
| MS.gene88661.t1 | MTR_2g095800 | 42.857 | 182 | 83 | 6 | 6 | 170 | 124 | 301 | 6.34e-43 | 145 |
| MS.gene88661.t1 | MTR_2g049130 | 42.308 | 182 | 80 | 5 | 3 | 166 | 95 | 269 | 5.16e-42 | 142 |
| MS.gene88661.t1 | MTR_1g033420 | 37.234 | 188 | 100 | 4 | 9 | 180 | 107 | 292 | 6.86e-39 | 135 |
| MS.gene88661.t1 | MTR_5g029100 | 35.263 | 190 | 100 | 6 | 11 | 179 | 87 | 274 | 1.35e-37 | 132 |
| MS.gene88661.t1 | MTR_5g029100 | 35.263 | 190 | 100 | 6 | 11 | 179 | 118 | 305 | 5.13e-37 | 131 |
| MS.gene88661.t1 | MTR_8g090100 | 35.135 | 185 | 103 | 4 | 11 | 180 | 100 | 282 | 2.08e-35 | 126 |
| MS.gene88661.t1 | MTR_8g064180 | 33.161 | 193 | 105 | 5 | 9 | 179 | 120 | 310 | 5.48e-31 | 114 |
| MS.gene88661.t1 | MTR_8g479340 | 40.404 | 99 | 42 | 3 | 100 | 182 | 41 | 138 | 1.60e-16 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88661.t1 | AT4G25810 | 72.449 | 196 | 38 | 1 | 3 | 182 | 91 | 286 | 2.43e-106 | 306 |
| MS.gene88661.t1 | AT5G57560 | 70.352 | 199 | 42 | 1 | 1 | 182 | 86 | 284 | 1.16e-105 | 304 |
| MS.gene88661.t1 | AT4G30270 | 75.000 | 180 | 45 | 0 | 3 | 182 | 89 | 268 | 1.94e-105 | 303 |
| MS.gene88661.t1 | AT5G57550 | 67.021 | 188 | 51 | 1 | 3 | 179 | 95 | 282 | 8.35e-98 | 285 |
| MS.gene88661.t1 | AT4G30290 | 64.362 | 188 | 57 | 1 | 3 | 180 | 90 | 277 | 3.11e-93 | 273 |
| MS.gene88661.t1 | AT4G30280 | 63.298 | 188 | 59 | 1 | 3 | 180 | 95 | 282 | 1.17e-92 | 271 |
| MS.gene88661.t1 | AT5G57530 | 65.969 | 191 | 51 | 1 | 3 | 179 | 92 | 282 | 3.64e-92 | 270 |
| MS.gene88661.t1 | AT1G65310 | 63.298 | 188 | 59 | 1 | 3 | 180 | 95 | 282 | 5.82e-92 | 270 |
| MS.gene88661.t1 | AT1G65310 | 63.298 | 188 | 59 | 1 | 3 | 180 | 117 | 304 | 6.23e-92 | 270 |
| MS.gene88661.t1 | AT5G48070 | 61.702 | 188 | 62 | 1 | 3 | 180 | 95 | 282 | 3.53e-91 | 268 |
| MS.gene88661.t1 | AT5G57540 | 64.921 | 191 | 53 | 1 | 3 | 179 | 91 | 281 | 5.07e-91 | 267 |
| MS.gene88661.t1 | AT2G18800 | 61.165 | 206 | 53 | 3 | 3 | 181 | 93 | 298 | 1.20e-89 | 265 |
| MS.gene88661.t1 | AT3G23730 | 64.141 | 198 | 53 | 2 | 3 | 182 | 92 | 289 | 9.04e-89 | 262 |
| MS.gene88661.t1 | AT4G14130 | 63.077 | 195 | 57 | 1 | 3 | 182 | 93 | 287 | 2.17e-88 | 261 |
| MS.gene88661.t1 | AT4G25820 | 63.351 | 191 | 56 | 1 | 3 | 179 | 95 | 285 | 1.27e-87 | 259 |
| MS.gene88661.t1 | AT5G13870 | 57.812 | 192 | 65 | 3 | 3 | 179 | 97 | 287 | 3.72e-71 | 217 |
| MS.gene88661.t1 | AT5G13870 | 57.812 | 192 | 65 | 3 | 3 | 179 | 97 | 287 | 3.72e-71 | 217 |
| MS.gene88661.t1 | AT5G13870 | 57.812 | 192 | 65 | 3 | 3 | 179 | 97 | 287 | 3.72e-71 | 217 |
| MS.gene88661.t1 | AT2G06850 | 55.208 | 192 | 70 | 3 | 3 | 179 | 40 | 230 | 1.57e-69 | 211 |
| MS.gene88661.t1 | AT4G28850 | 51.269 | 197 | 77 | 2 | 3 | 180 | 92 | 288 | 7.72e-69 | 211 |
| MS.gene88661.t1 | AT2G06850 | 55.208 | 192 | 70 | 3 | 3 | 179 | 100 | 290 | 9.18e-69 | 211 |
| MS.gene88661.t1 | AT4G03210 | 51.031 | 194 | 77 | 3 | 3 | 179 | 64 | 256 | 2.75e-66 | 204 |
| MS.gene88661.t1 | AT4G03210 | 51.031 | 194 | 77 | 3 | 3 | 179 | 92 | 284 | 5.24e-66 | 204 |
| MS.gene88661.t1 | AT5G65730 | 50.811 | 185 | 76 | 3 | 11 | 181 | 109 | 292 | 5.57e-65 | 201 |
| MS.gene88661.t1 | AT2G14620 | 49.744 | 195 | 80 | 4 | 3 | 180 | 41 | 234 | 3.20e-61 | 190 |
| MS.gene88661.t1 | AT2G14620 | 49.744 | 195 | 80 | 4 | 3 | 180 | 52 | 245 | 3.75e-61 | 190 |
| MS.gene88661.t1 | AT4G37800 | 50.270 | 185 | 77 | 3 | 11 | 181 | 108 | 291 | 5.91e-61 | 191 |
| MS.gene88661.t1 | AT2G14620 | 49.744 | 195 | 80 | 4 | 3 | 180 | 102 | 295 | 1.57e-60 | 190 |
| MS.gene88661.t1 | AT1G11545 | 48.969 | 194 | 80 | 4 | 7 | 182 | 110 | 302 | 1.25e-59 | 188 |
| MS.gene88661.t1 | AT4G13090 | 46.907 | 194 | 84 | 4 | 3 | 179 | 97 | 288 | 2.01e-56 | 179 |
| MS.gene88661.t1 | AT3G25050 | 46.392 | 194 | 83 | 5 | 3 | 179 | 100 | 289 | 4.24e-54 | 174 |
| MS.gene88661.t1 | AT4G13080 | 46.597 | 191 | 85 | 5 | 3 | 179 | 104 | 291 | 1.40e-53 | 172 |
| MS.gene88661.t1 | AT3G44990 | 44.318 | 176 | 79 | 5 | 11 | 170 | 113 | 285 | 2.32e-44 | 149 |
| MS.gene88661.t1 | AT2G36870 | 43.243 | 185 | 85 | 5 | 11 | 179 | 117 | 297 | 4.35e-43 | 145 |
| MS.gene88661.t1 | AT1G32170 | 37.566 | 189 | 97 | 5 | 11 | 180 | 108 | 294 | 1.18e-42 | 145 |
| MS.gene88661.t1 | AT1G14720 | 35.263 | 190 | 104 | 4 | 9 | 181 | 105 | 292 | 5.54e-38 | 133 |
| MS.gene88661.t1 | AT2G01850 | 34.737 | 190 | 105 | 4 | 9 | 181 | 105 | 292 | 5.26e-37 | 130 |
| MS.gene88661.t1 | AT4G18990 | 33.000 | 200 | 102 | 5 | 11 | 180 | 42 | 239 | 2.45e-35 | 125 |
| MS.gene88661.t1 | AT4G18990 | 34.500 | 200 | 99 | 5 | 11 | 180 | 116 | 313 | 1.50e-34 | 125 |
| MS.gene88661.t1 | AT1G10550 | 33.846 | 195 | 101 | 5 | 11 | 179 | 117 | 309 | 7.38e-33 | 119 |
| MS.gene88661.t1 | AT3G48580 | 34.921 | 189 | 98 | 6 | 3 | 179 | 39 | 214 | 1.40e-31 | 114 |
| MS.gene88661.t1 | AT3G48580 | 34.921 | 189 | 98 | 6 | 3 | 179 | 98 | 273 | 5.62e-31 | 114 |
| MS.gene88661.t1 | AT2G36870 | 56.452 | 62 | 22 | 1 | 11 | 67 | 117 | 178 | 1.31e-18 | 79.3 |
| MS.gene88661.t1 | AT3G48580 | 28.042 | 189 | 91 | 7 | 3 | 179 | 98 | 253 | 2.14e-14 | 69.3 |
Find 41 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTCATTGGTTGATTCTT+TGG | 0.185511 | 8.1:+4403413 | None:intergenic |
| ATGTTCTTGAATTCTCTTAT+TGG | 0.197118 | 8.1:+4403458 | None:intergenic |
| TTCACACCTACTCCATTCTT+TGG | 0.237903 | 8.1:-4403657 | MS.gene88661:CDS |
| TGAAATTGACTTTGAATTCT+TGG | 0.248522 | 8.1:-4403785 | MS.gene88661:CDS |
| TGTCATCAAAAGGATCAAAT+TGG | 0.258251 | 8.1:-4403810 | MS.gene88661:CDS |
| CTCCATTCACTGCATCTTAT+AGG | 0.269112 | 8.1:-4403319 | MS.gene88661:CDS |
| GAAATTGACTTTGAATTCTT+GGG | 0.327454 | 8.1:-4403784 | MS.gene88661:CDS |
| GAGAGCAACAATTCCATCTA+TGG | 0.342180 | 8.1:-4403699 | MS.gene88661:CDS |
| TGAGGATATACTCAAGTCTA+TGG | 0.355078 | 8.1:-4403397 | MS.gene88661:CDS |
| TAGGATGCAGTGCACTCTAT+TGG | 0.390519 | 8.1:+4403152 | None:intergenic |
| CAGTTGGATCAAACCATAGA+TGG | 0.393171 | 8.1:+4403686 | None:intergenic |
| TGCACTCTATTGGAAGGCCT+TGG | 0.405324 | 8.1:+4403162 | None:intergenic |
| GCACTCTATTGGAAGGCCTT+GGG | 0.408314 | 8.1:+4403163 | None:intergenic |
| ACTTGTTGAATCCAACTCTT+GGG | 0.425232 | 8.1:+4403256 | None:intergenic |
| AGACTTGAGTATATCCTCAT+TGG | 0.432038 | 8.1:+4403401 | None:intergenic |
| GTCTATGGAATGCTGATGAT+TGG | 0.434923 | 8.1:-4403382 | MS.gene88661:CDS |
| GACTTGTTGAATCCAACTCT+TGG | 0.435704 | 8.1:+4403255 | None:intergenic |
| GTCATCAAAAGGATCAAATT+GGG | 0.451206 | 8.1:-4403809 | MS.gene88661:CDS |
| GGCATGCAGTTGTCATCAAA+AGG | 0.488525 | 8.1:-4403820 | MS.gene88661:CDS |
| GAATTCTTGGGGAATGTAAG+TGG | 0.491509 | 8.1:-4403772 | MS.gene88661:CDS |
| TTCAAGAACATGGAATCAAA+AGG | 0.493604 | 8.1:-4403446 | MS.gene88661:CDS |
| TTCCTATAAGATGCAGTGAA+TGG | 0.501342 | 8.1:+4403317 | None:intergenic |
| GCGGTCTTGTCAAGACAGAT+TGG | 0.512024 | 8.1:-4403349 | MS.gene88661:CDS |
| AATGTGTTTAGTCAAGGAAA+AGG | 0.525149 | 8.1:-4403727 | MS.gene88661:CDS |
| TCTATGGAATGCTGATGATT+GGG | 0.538637 | 8.1:-4403381 | MS.gene88661:CDS |
| CACTCTATTGGAAGGCCTTG+GGG | 0.539602 | 8.1:+4403164 | None:intergenic |
| GCGTTGAGGATTCCAAAGAA+TGG | 0.542490 | 8.1:+4403645 | None:intergenic |
| CACACCAATGTGTTTAGTCA+AGG | 0.543031 | 8.1:-4403733 | MS.gene88661:CDS |
| AAATTGACTTTGAATTCTTG+GGG | 0.549232 | 8.1:-4403783 | MS.gene88661:CDS |
| ACATTGGTGTGAAGAGTGTA+TGG | 0.556406 | 8.1:+4403745 | None:intergenic |
| AGGATTCCAAAGAATGGAGT+AGG | 0.588075 | 8.1:+4403651 | None:intergenic |
| AGACTACTTCATCTAATGCA+TGG | 0.591786 | 8.1:-4403283 | MS.gene88661:CDS |
| TAGGTGTGAAAATCAGCAGT+TGG | 0.604383 | 8.1:+4403670 | None:intergenic |
| ATGCAGTGCACTCTATTGGA+AGG | 0.605313 | 8.1:+4403156 | None:intergenic |
| AATAAGAGAATTCAAGAACA+TGG | 0.612760 | 8.1:-4403456 | MS.gene88661:CDS |
| GATGATTGGGCAACAAGAGG+CGG | 0.625561 | 8.1:-4403368 | MS.gene88661:CDS |
| GCTGATGATTGGGCAACAAG+AGG | 0.626727 | 8.1:-4403371 | MS.gene88661:CDS |
| GGTGCTTACACAATGCGTTG+AGG | 0.644219 | 8.1:+4403631 | None:intergenic |
| TTCCAAAGAATCAACCAATG+AGG | 0.645428 | 8.1:-4403415 | MS.gene88661:CDS |
| AAGTCAACAAAGATTGAGTG+AGG | 0.654429 | 8.1:-4403237 | MS.gene88661:CDS |
| GACCTCAAAAGATTTCCCCA+AGG | 0.701224 | 8.1:-4403179 | MS.gene88661:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAAAAAAAAAATCAAT+TGG | - | chr8.1:4403422-4403441 | MS.gene88661:CDS | 10.0% |
| !! | ACTAATATATAAACATGTGA+CGG | - | chr8.1:4403377-4403396 | MS.gene88661:CDS | 20.0% |
| !! | TCATCAATAATCAATTCATT+GGG | + | chr8.1:4403449-4403468 | None:intergenic | 20.0% |
| !! | TTCATCAATAATCAATTCAT+TGG | + | chr8.1:4403450-4403469 | None:intergenic | 20.0% |
| ! | AATAAGAGAATTCAAGAACA+TGG | - | chr8.1:4403512-4403531 | MS.gene88661:intron | 25.0% |
| ! | ATGTTCTTGAATTCTCTTAT+TGG | + | chr8.1:4403513-4403532 | None:intergenic | 25.0% |
| !! | AAATTGACTTTGAATTCTTG+GGG | - | chr8.1:4403185-4403204 | MS.gene88661:CDS | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+GGG | - | chr8.1:4403184-4403203 | MS.gene88661:CDS | 25.0% |
| !! | TGAAATTGACTTTGAATTCT+TGG | - | chr8.1:4403183-4403202 | MS.gene88661:CDS | 25.0% |
| AATGTGTTTAGTCAAGGAAA+AGG | - | chr8.1:4403241-4403260 | MS.gene88661:CDS | 30.0% | |
| GTCATCAAAAGGATCAAATT+GGG | - | chr8.1:4403159-4403178 | MS.gene88661:CDS | 30.0% | |
| TGTCATCAAAAGGATCAAAT+TGG | - | chr8.1:4403158-4403177 | MS.gene88661:CDS | 30.0% | |
| TTCAAGAACATGGAATCAAA+AGG | - | chr8.1:4403522-4403541 | MS.gene88661:intron | 30.0% | |
| ! | AATTGAATGCAGTTTTTCTG+TGG | - | chr8.1:4403479-4403498 | MS.gene88661:CDS | 30.0% |
| ! | TTTTCCTTGACTAAACACAT+TGG | + | chr8.1:4403242-4403261 | None:intergenic | 30.0% |
| AAGTCAACAAAGATTGAGTG+AGG | - | chr8.1:4403731-4403750 | MS.gene88661:CDS | 35.0% | |
| AGACTACTTCATCTAATGCA+TGG | - | chr8.1:4403685-4403704 | MS.gene88661:CDS | 35.0% | |
| AGACTTGAGTATATCCTCAT+TGG | + | chr8.1:4403570-4403589 | None:intergenic | 35.0% | |
| TCTATGGAATGCTGATGATT+GGG | - | chr8.1:4403587-4403606 | MS.gene88661:intron | 35.0% | |
| TGAGGATATACTCAAGTCTA+TGG | - | chr8.1:4403571-4403590 | MS.gene88661:intron | 35.0% | |
| TTCCAAAGAATCAACCAATG+AGG | - | chr8.1:4403553-4403572 | MS.gene88661:intron | 35.0% | |
| TTCCTATAAGATGCAGTGAA+TGG | + | chr8.1:4403654-4403673 | None:intergenic | 35.0% | |
| ! | ACTTGTTGAATCCAACTCTT+GGG | + | chr8.1:4403715-4403734 | None:intergenic | 35.0% |
| ! | ATCCTCATTGGTTGATTCTT+TGG | + | chr8.1:4403558-4403577 | None:intergenic | 35.0% |
| AGGATTCCAAAGAATGGAGT+AGG | + | chr8.1:4403320-4403339 | None:intergenic | 40.0% | |
| CACACCAATGTGTTTAGTCA+AGG | - | chr8.1:4403235-4403254 | MS.gene88661:CDS | 40.0% | |
| CAGTTGGATCAAACCATAGA+TGG | + | chr8.1:4403285-4403304 | None:intergenic | 40.0% | |
| CTCCATTCACTGCATCTTAT+AGG | - | chr8.1:4403649-4403668 | MS.gene88661:CDS | 40.0% | |
| GAATTCTTGGGGAATGTAAG+TGG | - | chr8.1:4403196-4403215 | MS.gene88661:CDS | 40.0% | |
| GAGAGCAACAATTCCATCTA+TGG | - | chr8.1:4403269-4403288 | MS.gene88661:CDS | 40.0% | |
| GTCTATGGAATGCTGATGAT+TGG | - | chr8.1:4403586-4403605 | MS.gene88661:intron | 40.0% | |
| TAGGTGTGAAAATCAGCAGT+TGG | + | chr8.1:4403301-4403320 | None:intergenic | 40.0% | |
| TTCACACCTACTCCATTCTT+TGG | - | chr8.1:4403311-4403330 | MS.gene88661:CDS | 40.0% | |
| ! | ACATTGGTGTGAAGAGTGTA+TGG | + | chr8.1:4403226-4403245 | None:intergenic | 40.0% |
| ! | GAATGCAGTTTTTCTGTGGA+TGG | - | chr8.1:4403483-4403502 | MS.gene88661:intron | 40.0% |
| !! | GACTTGTTGAATCCAACTCT+TGG | + | chr8.1:4403716-4403735 | None:intergenic | 40.0% |
| AACGCATTGTGTAAGCACCT+CGG | - | chr8.1:4403341-4403360 | MS.gene88661:CDS | 45.0% | |
| ATGCAGTGCACTCTATTGGA+AGG | + | chr8.1:4403815-4403834 | None:intergenic | 45.0% | |
| GACCTCAAAAGATTTCCCCA+AGG | - | chr8.1:4403789-4403808 | MS.gene88661:CDS | 45.0% | |
| GCGTTGAGGATTCCAAAGAA+TGG | + | chr8.1:4403326-4403345 | None:intergenic | 45.0% | |
| TAGGATGCAGTGCACTCTAT+TGG | + | chr8.1:4403819-4403838 | None:intergenic | 45.0% | |
| TAGTGTCAATATCGTGTCCG+AGG | + | chr8.1:4403361-4403380 | None:intergenic | 45.0% | |
| ! | TGCATGGTTTTCCCAAGAGT+TGG | - | chr8.1:4403701-4403720 | MS.gene88661:CDS | 45.0% |
| CACTCTATTGGAAGGCCTTG+GGG | + | chr8.1:4403807-4403826 | None:intergenic | 50.0% | |
| GATGATTGGGCAACAAGAGG+CGG | - | chr8.1:4403600-4403619 | MS.gene88661:intron | 50.0% | |
| GCACTCTATTGGAAGGCCTT+GGG | + | chr8.1:4403808-4403827 | None:intergenic | 50.0% | |
| GCTGATGATTGGGCAACAAG+AGG | - | chr8.1:4403597-4403616 | MS.gene88661:intron | 50.0% | |
| GGTGCTTACACAATGCGTTG+AGG | + | chr8.1:4403340-4403359 | None:intergenic | 50.0% | |
| TGCACTCTATTGGAAGGCCT+TGG | + | chr8.1:4403809-4403828 | None:intergenic | 50.0% | |
| ! | GCGGTCTTGTCAAGACAGAT+TGG | - | chr8.1:4403619-4403638 | MS.gene88661:intron | 50.0% |
| ! | GGCCTTGGGGAAATCTTTTG+AGG | + | chr8.1:4403794-4403813 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 4403151 | 4403839 | 4403151 | ID=MS.gene88661 |
| chr8.1 | mRNA | 4403151 | 4403839 | 4403151 | ID=MS.gene88661.t1;Parent=MS.gene88661 |
| chr8.1 | exon | 4403640 | 4403839 | 4403640 | ID=MS.gene88661.t1.exon1;Parent=MS.gene88661.t1 |
| chr8.1 | CDS | 4403640 | 4403839 | 4403640 | ID=cds.MS.gene88661.t1;Parent=MS.gene88661.t1 |
| chr8.1 | exon | 4403151 | 4403499 | 4403151 | ID=MS.gene88661.t1.exon2;Parent=MS.gene88661.t1 |
| chr8.1 | CDS | 4403151 | 4403499 | 4403151 | ID=cds.MS.gene88661.t1;Parent=MS.gene88661.t1 |
| Gene Sequence |
| Protein sequence |
