Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056571.t1 | XP_003629019.1 | 99.5 | 398 | 2 | 0 | 1 | 398 | 69 | 466 | 2.30E-230 | 807.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056571.t1 | K4CI52 | 78.4 | 398 | 85 | 1 | 1 | 397 | 68 | 465 | 4.3e-185 | 648.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056571.t1 | G7L7U3 | 99.5 | 398 | 2 | 0 | 1 | 398 | 69 | 466 | 1.7e-230 | 807.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056571 | MS.gene067999 | 0.938647 | 4.76E-99 | -1.69E-46 |
| MS.gene056571 | MS.gene45444 | 0.819015 | 1.45E-52 | -1.69E-46 |
| MS.gene056571 | MS.gene45455 | 0.815977 | 7.01E-52 | -1.69E-46 |
| MS.gene056571 | MS.gene64870 | 0.808041 | 3.76E-50 | -1.69E-46 |
| MS.gene056571 | MS.gene78110 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene056571 | MS.gene82940 | 0.895487 | 9.15E-76 | -1.69E-46 |
| MS.gene056571 | MS.gene83394 | 0.911963 | 3.35E-83 | -1.69E-46 |
| MS.gene056571 | MS.gene86565 | 0.812958 | 3.26E-51 | -1.69E-46 |
| MS.gene056571 | MS.gene88661 | 0.818205 | 2.21E-52 | -1.69E-46 |
| MS.gene056571 | MS.gene88662 | 0.812651 | 3.81E-51 | -1.69E-46 |
| MS.gene056571 | MS.gene88663 | 0.817013 | 4.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 68 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATCACCCTTGAAGTTAT+TGG | 0.139263 | 8.2:+31866233 | None:intergenic |
| ATTAGCAAAGTTGGAGATTT+TGG | 0.172171 | 8.2:-31865852 | MS.gene056571:CDS |
| CCAAATGGCATGAAAGTATT+AGG | 0.192648 | 8.2:+31865905 | None:intergenic |
| TGTGCAATGGATTCAATATT+AGG | 0.194763 | 8.2:+31867195 | None:intergenic |
| GGCATGAAAGTATTAGGTTT+TGG | 0.278903 | 8.2:+31865911 | None:intergenic |
| GGCAATACTTTCCATCCTTT+TGG | 0.288647 | 8.2:+31866128 | None:intergenic |
| CCTAATACTTTCATGCCATT+TGG | 0.295762 | 8.2:-31865905 | MS.gene056571:CDS |
| TGATTTATTAGCTTCTTTCA+TGG | 0.302986 | 8.2:-31866722 | MS.gene056571:CDS |
| AGTGTTCCTGGAAGGTTTAT+TGG | 0.309326 | 8.2:+31866835 | None:intergenic |
| CTTTCATGCCATTTGGAAAT+GGG | 0.327952 | 8.2:-31865898 | MS.gene056571:CDS |
| ACTTTCATGCCATTTGGAAA+TGG | 0.329451 | 8.2:-31865899 | MS.gene056571:CDS |
| TCTGGCTCTTTGAAATTCTC+TGG | 0.344631 | 8.2:+31866080 | None:intergenic |
| GCTAGCAAAGAAAGGATGTT+AGG | 0.346961 | 8.2:-31867315 | MS.gene056571:CDS |
| GTGAAGAAATTGGTCTAAGT+TGG | 0.354708 | 8.2:-31866274 | MS.gene056571:CDS |
| ATAAAGGGGAAACAAGAAAA+TGG | 0.363545 | 8.2:-31866296 | MS.gene056571:CDS |
| TTCTTGGAATATAAGTTGAT+TGG | 0.364754 | 8.2:+31865372 | None:intergenic |
| CACAAACTTGCCTCAAATCA+TGG | 0.365239 | 8.2:-31867176 | MS.gene056571:CDS |
| ATTTGATCCTTCTAGATTTG+AGG | 0.372865 | 8.2:-31866054 | MS.gene056571:intron |
| AGAACAAATGACTATAATAA+AGG | 0.374050 | 8.2:-31866312 | MS.gene056571:CDS |
| CAAGAAAATGGTGAAGAAAT+TGG | 0.375367 | 8.2:-31866284 | MS.gene056571:CDS |
| GAACAAATGACTATAATAAA+GGG | 0.404088 | 8.2:-31866311 | MS.gene056571:CDS |
| GCCTTGTGAAATAGTGTTCC+TGG | 0.410273 | 8.2:+31866823 | None:intergenic |
| AACATCCTTTCTTTGCTAGC+TGG | 0.414458 | 8.2:+31867318 | None:intergenic |
| GTATACCAACCTGTACTTTG+TGG | 0.418077 | 8.2:+31865811 | None:intergenic |
| TCAATGCCAATAAACCTTCC+AGG | 0.433850 | 8.2:-31866841 | MS.gene056571:CDS |
| TGATAGAAGTGCAACGTTGA+AGG | 0.435786 | 8.2:+31866939 | None:intergenic |
| TGATGTATATTTCTGAATAG+TGG | 0.440668 | 8.2:+31866107 | None:intergenic |
| ATAATTACCTCAAATCTAGA+AGG | 0.440840 | 8.2:+31866047 | None:intergenic |
| CAAATATCAGATAATATCAT+TGG | 0.441003 | 8.2:-31866673 | MS.gene056571:CDS |
| AATTTCCATCCCATGATTTG+AGG | 0.443137 | 8.2:+31867166 | None:intergenic |
| TACTTACTGTGACTGATTCA+AGG | 0.448318 | 8.2:+31866572 | None:intergenic |
| AAAATATGCCAATAACTTCA+AGG | 0.450013 | 8.2:-31866241 | MS.gene056571:CDS |
| ACAGAAGATGTTGAATATCA+AGG | 0.451206 | 8.2:-31866161 | MS.gene056571:CDS |
| AACTTTGCTAATTCATTGCC+AGG | 0.456588 | 8.2:+31865863 | None:intergenic |
| TGGCAATGAATTAGCAAAGT+TGG | 0.470749 | 8.2:-31865861 | MS.gene056571:CDS |
| CAAGGGTATCTTATACCAAA+AGG | 0.475982 | 8.2:-31866143 | MS.gene056571:CDS |
| TCTTTGCTAGCTGGAAATGT+TGG | 0.477910 | 8.2:+31867327 | None:intergenic |
| TGAAGAAATTGGTCTAAGTT+GGG | 0.481892 | 8.2:-31866273 | MS.gene056571:CDS |
| CTAGCAAAGAAAGGATGTTA+GGG | 0.495783 | 8.2:-31867314 | MS.gene056571:CDS |
| TGTTACTACACACTTGAGAA+AGG | 0.504038 | 8.2:-31866871 | MS.gene056571:CDS |
| TTTGATGGCTTCAGGCATGA+AGG | 0.511262 | 8.2:+31867227 | None:intergenic |
| CATTTCCAGCTAGCAAAGAA+AGG | 0.523009 | 8.2:-31867323 | MS.gene056571:CDS |
| CAGAAGATGTTGAATATCAA+GGG | 0.526313 | 8.2:-31866160 | MS.gene056571:CDS |
| TCTTTCATGGATGAGAAAGC+AGG | 0.537178 | 8.2:-31866709 | MS.gene056571:CDS |
| GCATGGACCCCATTTCCAAA+TGG | 0.541992 | 8.2:+31865890 | None:intergenic |
| CAACTGCTAGTGTGCTTACG+TGG | 0.546658 | 8.2:-31866627 | MS.gene056571:CDS |
| AATGGGGTCCATGCATGTCC+TGG | 0.552357 | 8.2:-31865881 | MS.gene056571:CDS |
| TTTCATGCCATTTGGAAATG+GGG | 0.553496 | 8.2:-31865897 | MS.gene056571:CDS |
| GTTACTACACACTTGAGAAA+GGG | 0.556324 | 8.2:-31866870 | MS.gene056571:CDS |
| GGTATCTTATACCAAAAGGA+TGG | 0.558937 | 8.2:-31866139 | MS.gene056571:CDS |
| AAATATGCCAATAACTTCAA+GGG | 0.559129 | 8.2:-31866240 | MS.gene056571:CDS |
| TTCACAAGGCAATGAAAGCA+AGG | 0.565279 | 8.2:-31866810 | MS.gene056571:CDS |
| ACAAACTTGCCTCAAATCAT+GGG | 0.572422 | 8.2:-31867175 | MS.gene056571:CDS |
| ATCATCTAACCACAAAGTAC+AGG | 0.575666 | 8.2:-31865820 | MS.gene056571:intron |
| TTGTGTAGGTGGTCTGTGGT+CGG | 0.586459 | 8.2:-31865447 | MS.gene056571:intron |
| GTGACTGATTCAAGGACACT+AGG | 0.588112 | 8.2:+31866580 | None:intergenic |
| ATTCATTGCCAGGACATGCA+TGG | 0.589044 | 8.2:+31865873 | None:intergenic |
| TGTGAAATAGTGTTCCTGGA+AGG | 0.589402 | 8.2:+31866827 | None:intergenic |
| ACTTGCCTCAAATCATGGGA+TGG | 0.610730 | 8.2:-31867171 | MS.gene056571:CDS |
| AACAAATGACTATAATAAAG+GGG | 0.621233 | 8.2:-31866310 | MS.gene056571:CDS |
| TTTGAGGCAAGTTTGTGCAA+TGG | 0.622370 | 8.2:+31867182 | None:intergenic |
| TTTATTGTGTAGGTGGTCTG+TGG | 0.628040 | 8.2:-31865451 | MS.gene056571:intron |
| ACGTGGATTGTGAAGTACCT+TGG | 0.630057 | 8.2:-31866610 | MS.gene056571:CDS |
| TCCAGGAACACTATTTCACA+AGG | 0.635436 | 8.2:-31866824 | MS.gene056571:CDS |
| GATACAAGAGACTCTAAGAG+TGG | 0.675243 | 8.2:-31866216 | MS.gene056571:CDS |
| GGACTTGAAATCATCACACA+AGG | 0.680405 | 8.2:+31867393 | None:intergenic |
| AACAAATCATCTCAACAAGG+AGG | 0.708600 | 8.2:-31866765 | MS.gene056571:CDS |
| TAGAACAAATCATCTCAACA+AGG | 0.717944 | 8.2:-31866768 | MS.gene056571:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATTAATATCAATAAAA+GGG | - | chr8.2:31866334-31866353 | MS.gene056571:intron | 10.0% |
| !!! | CATTATTATAATTTTAAACT+AGG | + | chr8.2:31867294-31867313 | None:intergenic | 10.0% |
| !! | CTACAATTAATATCAATAAA+AGG | - | chr8.2:31866333-31866352 | MS.gene056571:intron | 15.0% |
| !! | TTTAGTAAAACTACAAAATT+TGG | - | chr8.2:31866404-31866423 | MS.gene056571:intron | 15.0% |
| !!! | TTTTAAGCTTATAAATGTTA+TGG | - | chr8.2:31866446-31866465 | MS.gene056571:intron | 15.0% |
| !! | AACAAATGACTATAATAAAG+GGG | - | chr8.2:31866488-31866507 | MS.gene056571:intron | 20.0% |
| !! | AGAACAAATGACTATAATAA+AGG | - | chr8.2:31866486-31866505 | MS.gene056571:intron | 20.0% |
| !! | CAAAATTTGATGTTTGATAA+AGG | + | chr8.2:31866379-31866398 | None:intergenic | 20.0% |
| !! | CAAATATCAGATAATATCAT+TGG | - | chr8.2:31866125-31866144 | MS.gene056571:CDS | 20.0% |
| !! | GAACAAATGACTATAATAAA+GGG | - | chr8.2:31866487-31866506 | MS.gene056571:intron | 20.0% |
| !!! | ATAGATTCTGTTAACAATTT+TGG | - | chr8.2:31866855-31866874 | MS.gene056571:CDS | 20.0% |
| !!! | TTTAGAAATATTCTAAAGTG+TGG | - | chr8.2:31867315-31867334 | MS.gene056571:CDS | 20.0% |
| ! | AAAATATGCCAATAACTTCA+AGG | - | chr8.2:31866557-31866576 | MS.gene056571:intron | 25.0% |
| ! | AAAATTTGCCAATGATTAGA+AGG | + | chr8.2:31866271-31866290 | None:intergenic | 25.0% |
| ! | AAATATGCCAATAACTTCAA+GGG | - | chr8.2:31866558-31866577 | MS.gene056571:intron | 25.0% |
| ! | ATAATTACCTCAAATCTAGA+AGG | + | chr8.2:31866754-31866773 | None:intergenic | 25.0% |
| ! | ATATCTTTGATTCTGAATCT+CGG | - | chr8.2:31867184-31867203 | MS.gene056571:CDS | 25.0% |
| ! | ATTGTTAACAGAATCTATCA+AGG | + | chr8.2:31866853-31866872 | None:intergenic | 25.0% |
| ! | ATTTAAACATGCATTAACTC+TGG | + | chr8.2:31867054-31867073 | None:intergenic | 25.0% |
| ! | ATTTCGTTTATCTAAGTTGT+TGG | - | chr8.2:31867143-31867162 | MS.gene056571:CDS | 25.0% |
| ! | TAATCAAAGTTCACAATAGT+CGG | + | chr8.2:31867227-31867246 | None:intergenic | 25.0% |
| ! | TTTCGTTTATCTAAGTTGTT+GGG | - | chr8.2:31867144-31867163 | MS.gene056571:CDS | 25.0% |
| !! | TACTTACTGTTTTCATTTCA+AGG | + | chr8.2:31865671-31865690 | None:intergenic | 25.0% |
| !! | TGATGTATATTTCTGAATAG+TGG | + | chr8.2:31866694-31866713 | None:intergenic | 25.0% |
| !! | TGATTTATTAGCTTCTTTCA+TGG | - | chr8.2:31866076-31866095 | MS.gene056571:CDS | 25.0% |
| !!! | TTCTTGGAATATAAGTTGAT+TGG | + | chr8.2:31867429-31867448 | None:intergenic | 25.0% |
| AAAAAGAAAAGGCAGGAATT+TGG | + | chr8.2:31866798-31866817 | None:intergenic | 30.0% | |
| AAAAGAAAAGGCAGGAATTT+GGG | + | chr8.2:31866797-31866816 | None:intergenic | 30.0% | |
| ACAGAAGATGTTGAATATCA+AGG | - | chr8.2:31866637-31866656 | MS.gene056571:CDS | 30.0% | |
| AGGACAAAGACAAAAAGAAA+AGG | + | chr8.2:31866809-31866828 | None:intergenic | 30.0% | |
| ATAAAGGGGAAACAAGAAAA+TGG | - | chr8.2:31866502-31866521 | MS.gene056571:intron | 30.0% | |
| ATTTGATCCTTCTAGATTTG+AGG | - | chr8.2:31866744-31866763 | MS.gene056571:CDS | 30.0% | |
| CAAGAAAATGGTGAAGAAAT+TGG | - | chr8.2:31866514-31866533 | MS.gene056571:intron | 30.0% | |
| CAGAAGATGTTGAATATCAA+GGG | - | chr8.2:31866638-31866657 | MS.gene056571:CDS | 30.0% | |
| CCAATGATTAGAAGGATAAA+AGG | + | chr8.2:31866263-31866282 | None:intergenic | 30.0% | |
| GAAAAAAACGGAATTCAGTA+TGG | - | chr8.2:31867375-31867394 | MS.gene056571:CDS | 30.0% | |
| GCTATTATTTATTGTGTAGG+TGG | - | chr8.2:31867340-31867359 | MS.gene056571:CDS | 30.0% | |
| GCTGCTATTATTTATTGTGT+AGG | - | chr8.2:31867337-31867356 | MS.gene056571:CDS | 30.0% | |
| TAGAACAAATCATCTCAACA+AGG | - | chr8.2:31866030-31866049 | MS.gene056571:intron | 30.0% | |
| TGATTAGAAGGATAAAAGGT+AGG | + | chr8.2:31866259-31866278 | None:intergenic | 30.0% | |
| ! | ATGTTCAAGTCTCACATTTT+AGG | - | chr8.2:31865378-31865397 | MS.gene056571:CDS | 30.0% |
| ! | ATTAGCAAAGTTGGAGATTT+TGG | - | chr8.2:31866946-31866965 | MS.gene056571:CDS | 30.0% |
| ! | ATTAGGAACAATGCTTTTGA+TGG | + | chr8.2:31865589-31865608 | None:intergenic | 30.0% |
| ! | CAAGCAATTTTCTTTCATCA+AGG | - | chr8.2:31865510-31865529 | MS.gene056571:intron | 30.0% |
| ! | CCTTTTATCCTTCTAATCAT+TGG | - | chr8.2:31866260-31866279 | MS.gene056571:CDS | 30.0% |
| ! | CTAGAAGGATCAAATTTTTC+TGG | + | chr8.2:31866739-31866758 | None:intergenic | 30.0% |
| ! | GTTATGGTTATGTCTTTTGT+AGG | - | chr8.2:31866462-31866481 | MS.gene056571:intron | 30.0% |
| ! | GTTGCACTTCTATCAATTTT+TGG | - | chr8.2:31865867-31865886 | MS.gene056571:CDS | 30.0% |
| ! | TGAAGAAATTGGTCTAAGTT+GGG | - | chr8.2:31866525-31866544 | MS.gene056571:intron | 30.0% |
| ! | TGTGCAATGGATTCAATATT+AGG | + | chr8.2:31865606-31865625 | None:intergenic | 30.0% |
| ! | TGTTTTCATTTCAAGGTAAG+TGG | + | chr8.2:31865664-31865683 | None:intergenic | 30.0% |
| ! | TTGATTGGTAAACCATTTTG+AGG | + | chr8.2:31867414-31867433 | None:intergenic | 30.0% |
| !! | ATTCTGTTAACAATTTTGGC+AGG | - | chr8.2:31866859-31866878 | MS.gene056571:CDS | 30.0% |
| AACAAATCATCTCAACAAGG+AGG | - | chr8.2:31866033-31866052 | MS.gene056571:intron | 35.0% | |
| AACTTTGCTAATTCATTGCC+AGG | + | chr8.2:31866938-31866957 | None:intergenic | 35.0% | |
| AATCAGTCACAGTAAGTATC+TGG | - | chr8.2:31866231-31866250 | MS.gene056571:CDS | 35.0% | |
| AATTTCCATCCCATGATTTG+AGG | + | chr8.2:31865635-31865654 | None:intergenic | 35.0% | |
| ACAAACTTGCCTCAAATCAT+GGG | - | chr8.2:31865623-31865642 | MS.gene056571:intron | 35.0% | |
| ATCAGTCACAGTAAGTATCT+GGG | - | chr8.2:31866232-31866251 | MS.gene056571:CDS | 35.0% | |
| ATCATCTAACCACAAAGTAC+AGG | - | chr8.2:31866978-31866997 | MS.gene056571:intron | 35.0% | |
| ATTTGGCATGTACTTGTGTT+TGG | - | chr8.2:31866421-31866440 | MS.gene056571:intron | 35.0% | |
| CAAAGACAAAAAGAAAAGGC+AGG | + | chr8.2:31866805-31866824 | None:intergenic | 35.0% | |
| CCTAATACTTTCATGCCATT+TGG | - | chr8.2:31866893-31866912 | MS.gene056571:CDS | 35.0% | |
| CTAGCAAAGAAAGGATGTTA+GGG | - | chr8.2:31865484-31865503 | MS.gene056571:intron | 35.0% | |
| GGTATCTTATACCAAAAGGA+TGG | - | chr8.2:31866659-31866678 | MS.gene056571:CDS | 35.0% | |
| GTGCACTTTGAATAGTACAA+AGG | + | chr8.2:31866829-31866848 | None:intergenic | 35.0% | |
| GTTACTACACACTTGAGAAA+GGG | - | chr8.2:31865928-31865947 | MS.gene056571:intron | 35.0% | |
| TGGCAATGAATTAGCAAAGT+TGG | - | chr8.2:31866937-31866956 | MS.gene056571:CDS | 35.0% | |
| TGTATCACCCTTGAAGTTAT+TGG | + | chr8.2:31866568-31866587 | None:intergenic | 35.0% | |
| TGTTACTACACACTTGAGAA+AGG | - | chr8.2:31865927-31865946 | MS.gene056571:intron | 35.0% | |
| ! | ACTTTCATGCCATTTGGAAA+TGG | - | chr8.2:31866899-31866918 | MS.gene056571:CDS | 35.0% |
| ! | CTTTCATGCCATTTGGAAAT+GGG | - | chr8.2:31866900-31866919 | MS.gene056571:CDS | 35.0% |
| ! | GTGAAGAAATTGGTCTAAGT+TGG | - | chr8.2:31866524-31866543 | MS.gene056571:intron | 35.0% |
| ! | TACTTACTGTGACTGATTCA+AGG | + | chr8.2:31866229-31866248 | None:intergenic | 35.0% |
| ! | TTTCATGCCATTTGGAAATG+GGG | - | chr8.2:31866901-31866920 | MS.gene056571:CDS | 35.0% |
| !! | AACACAAATTTTGCTGCTTC+TGG | + | chr8.2:31865429-31865448 | None:intergenic | 35.0% |
| !! | CAAGGGTATCTTATACCAAA+AGG | - | chr8.2:31866655-31866674 | MS.gene056571:CDS | 35.0% |
| !! | CCAAATGGCATGAAAGTATT+AGG | + | chr8.2:31866896-31866915 | None:intergenic | 35.0% |
| !!! | GGCATGAAAGTATTAGGTTT+TGG | + | chr8.2:31866890-31866909 | None:intergenic | 35.0% |
| AACATCCTTTCTTTGCTAGC+TGG | + | chr8.2:31865483-31865502 | None:intergenic | 40.0% | |
| AGTGTTCCTGGAAGGTTTAT+TGG | + | chr8.2:31865966-31865985 | None:intergenic | 40.0% | |
| CACAAACTTGCCTCAAATCA+TGG | - | chr8.2:31865622-31865641 | MS.gene056571:intron | 40.0% | |
| CATTTCCAGCTAGCAAAGAA+AGG | - | chr8.2:31865475-31865494 | MS.gene056571:intron | 40.0% | |
| GCTAGCAAAGAAAGGATGTT+AGG | - | chr8.2:31865483-31865502 | MS.gene056571:intron | 40.0% | |
| GGACTTGAAATCATCACACA+AGG | + | chr8.2:31865408-31865427 | None:intergenic | 40.0% | |
| GTATACCAACCTGTACTTTG+TGG | + | chr8.2:31866990-31867009 | None:intergenic | 40.0% | |
| TCAATGCCAATAAACCTTCC+AGG | - | chr8.2:31865957-31865976 | MS.gene056571:intron | 40.0% | |
| TCCAGGAACACTATTTCACA+AGG | - | chr8.2:31865974-31865993 | MS.gene056571:intron | 40.0% | |
| TCTAACCACAAAGTACAGGT+TGG | - | chr8.2:31866982-31867001 | MS.gene056571:intron | 40.0% | |
| TCTGTGGTCGGTGAAAAAAA+CGG | - | chr8.2:31867363-31867382 | MS.gene056571:CDS | 40.0% | |
| TCTTTCATGGATGAGAAAGC+AGG | - | chr8.2:31866089-31866108 | MS.gene056571:CDS | 40.0% | |
| TCTTTGCTAGCTGGAAATGT+TGG | + | chr8.2:31865474-31865493 | None:intergenic | 40.0% | |
| TGTGAAATAGTGTTCCTGGA+AGG | + | chr8.2:31865974-31865993 | None:intergenic | 40.0% | |
| TTCACAAGGCAATGAAAGCA+AGG | - | chr8.2:31865988-31866007 | MS.gene056571:intron | 40.0% | |
| TTTATTGTGTAGGTGGTCTG+TGG | - | chr8.2:31867347-31867366 | MS.gene056571:CDS | 40.0% | |
| ! | CCTTTTGCTCTACCTCAAAA+TGG | - | chr8.2:31867399-31867418 | MS.gene056571:CDS | 40.0% |
| ! | GATACAAGAGACTCTAAGAG+TGG | - | chr8.2:31866582-31866601 | MS.gene056571:CDS | 40.0% |
| ! | GGCAATACTTTCCATCCTTT+TGG | + | chr8.2:31866673-31866692 | None:intergenic | 40.0% |
| ! | TGATAGAAGTGCAACGTTGA+AGG | + | chr8.2:31865862-31865881 | None:intergenic | 40.0% |
| ! | TTTGAGGCAAGTTTGTGCAA+TGG | + | chr8.2:31865619-31865638 | None:intergenic | 40.0% |
| !! | ACAATGCTTTTGATGGCTTC+AGG | + | chr8.2:31865582-31865601 | None:intergenic | 40.0% |
| !! | TCTGGCTCTTTGAAATTCTC+TGG | + | chr8.2:31866721-31866740 | None:intergenic | 40.0% |
| !!! | CCATTTTGAGGTAGAGCAAA+AGG | + | chr8.2:31867402-31867421 | None:intergenic | 40.0% |
| ACTTGCCTCAAATCATGGGA+TGG | - | chr8.2:31865627-31865646 | MS.gene056571:intron | 45.0% | |
| ATTCATTGCCAGGACATGCA+TGG | + | chr8.2:31866928-31866947 | None:intergenic | 45.0% | |
| GCCTTGTGAAATAGTGTTCC+TGG | + | chr8.2:31865978-31865997 | None:intergenic | 45.0% | |
| TCTGGCGACGATTCGAAATT+AGG | + | chr8.2:31867036-31867055 | None:intergenic | 45.0% | |
| ! | ACGTGGATTGTGAAGTACCT+TGG | - | chr8.2:31866188-31866207 | MS.gene056571:CDS | 45.0% |
| ! | GGACACTAGGATTTTCACCA+AGG | + | chr8.2:31866208-31866227 | None:intergenic | 45.0% |
| ! | GTGACTGATTCAAGGACACT+AGG | + | chr8.2:31866221-31866240 | None:intergenic | 45.0% |
| ! | TTTGATGGCTTCAGGCATGA+AGG | + | chr8.2:31865574-31865593 | None:intergenic | 45.0% |
| !!! | TTTTTTACAAAATAAATAAT+GGG | - | chr8.2:31865797-31865816 | MS.gene056571:intron | 5.0% |
| !!! | TTTTTTTACAAAATAAATAA+TGG | - | chr8.2:31865796-31865815 | MS.gene056571:intron | 5.0% |
| CAACTGCTAGTGTGCTTACG+TGG | - | chr8.2:31866171-31866190 | MS.gene056571:CDS | 50.0% | |
| GCATGGACCCCATTTCCAAA+TGG | + | chr8.2:31866911-31866930 | None:intergenic | 50.0% | |
| TTGTGTAGGTGGTCTGTGGT+CGG | - | chr8.2:31867351-31867370 | MS.gene056571:CDS | 50.0% | |
| AATGGGGTCCATGCATGTCC+TGG | - | chr8.2:31866917-31866936 | MS.gene056571:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 31865368 | 31867452 | 31865368 | ID=MS.gene056571 |
| chr8.2 | mRNA | 31865368 | 31867452 | 31865368 | ID=MS.gene056571.t1;Parent=MS.gene056571 |
| chr8.2 | exon | 31867137 | 31867452 | 31867137 | ID=MS.gene056571.t1.exon1;Parent=MS.gene056571.t1 |
| chr8.2 | CDS | 31867137 | 31867452 | 31867137 | ID=cds.MS.gene056571.t1;Parent=MS.gene056571.t1 |
| chr8.2 | exon | 31866579 | 31866965 | 31866579 | ID=MS.gene056571.t1.exon2;Parent=MS.gene056571.t1 |
| chr8.2 | CDS | 31866579 | 31866965 | 31866579 | ID=cds.MS.gene056571.t1;Parent=MS.gene056571.t1 |
| chr8.2 | exon | 31866055 | 31866336 | 31866055 | ID=MS.gene056571.t1.exon3;Parent=MS.gene056571.t1 |
| chr8.2 | CDS | 31866055 | 31866336 | 31866055 | ID=cds.MS.gene056571.t1;Parent=MS.gene056571.t1 |
| chr8.2 | exon | 31865821 | 31865939 | 31865821 | ID=MS.gene056571.t1.exon4;Parent=MS.gene056571.t1 |
| chr8.2 | CDS | 31865821 | 31865939 | 31865821 | ID=cds.MS.gene056571.t1;Parent=MS.gene056571.t1 |
| chr8.2 | exon | 31865368 | 31865461 | 31865368 | ID=MS.gene056571.t1.exon5;Parent=MS.gene056571.t1 |
| chr8.2 | CDS | 31865368 | 31865461 | 31865368 | ID=cds.MS.gene056571.t1;Parent=MS.gene056571.t1 |
| Gene Sequence |
| Protein sequence |
