AlfalfaGEDB | MS.gene88984

M. sativa cultivar XinJiangDaYe / MS.gene88984

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0008150 GO:0008152 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00394.25 PF07731.17 PF07732.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88984.t1	XP_013466217.1	98.5	543	7	1	1	542	1	543	0.00E+00	1095.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88984.t1	Q00624	57.1	536	219	5	7	532	6	540	3.5e-177	622.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88984.t1	A0A072VFN2	98.5	543	7	1	1	542	1	543	0.0e+00	1095.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050133	MS.gene88984	0.842884	1.97E-58	-1.69E-46
MS.gene052774	MS.gene88984	0.804556	2.04E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011879	MS.gene88984	PPI
MS.gene28548	MS.gene88984	PPI
MS.gene44958	MS.gene88984	PPI
MS.gene88984	MS.gene87346	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene88984.t1	MTR_1g026410	98.527	543	7	1	1	542	1	543	1088
MS.gene88984.t1	MTR_3g115050	84.095	547	79	2	1	542	1	544	962
MS.gene88984.t1	MTR_4g075690	76.296	540	121	2	3	542	11	543	857
MS.gene88984.t1	MTR_4g049390	74.031	516	134	0	23	538	22	537	810
MS.gene88984.t1	MTR_4g048350	72.481	516	141	1	23	538	22	536	789
MS.gene88984.t1	MTR_2g088080	71.082	536	155	0	2	537	4	539	784
MS.gene88984.t1	MTR_4g132320	69.963	536	160	1	7	542	11	545	757
MS.gene88984.t1	MTR_4g075690	74.324	444	107	2	3	446	11	447	679
MS.gene88984.t1	MTR_2g088080	70.961	458	133	0	80	537	1	458	669
MS.gene88984.t1	MTR_8g479390	60.155	517	203	2	23	538	26	540	647

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene88984.t1	AT1G76160	83.932	529	80	2	14	542	18	541	924
MS.gene88984.t1	AT1G41830	80.669	538	98	2	5	542	11	542	907
MS.gene88984.t1	AT1G21850	77.757	526	115	2	14	539	15	538	856
MS.gene88984.t1	AT1G21860	73.535	529	137	3	10	538	12	537	823
MS.gene88984.t1	AT4G22010	71.053	532	153	1	12	542	10	541	791
MS.gene88984.t1	AT4G38420	67.523	545	171	3	3	541	5	549	755
MS.gene88984.t1	AT4G28090	62.268	538	187	7	12	538	9	541	687
MS.gene88984.t1	AT5G66920	58.880	518	211	1	21	538	30	545	646
MS.gene88984.t1	AT4G38420	65.828	477	157	3	3	473	5	481	634
MS.gene88984.t1	AT1G55570	56.044	546	227	5	1	537	5	546	602

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Find 165 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCTTTCCAGGTGGAA+TGG	0.489538	1.4:+418375	None:intergenic
AACAAGTTACCTTTCCCTGA+TGG	0.521178	1.4:-418063	MS.gene88984:CDS
AACGTCAAGGGAGGAGTAGG+TGG	0.614850	1.4:+417758	None:intergenic
AACTCTGCAGGTCCAGTTTC+AGG	0.260810	1.4:-417612	MS.gene88984:CDS
AAGAAGTCAGCCAGCTTAAG+AGG	0.378912	1.4:+417363	None:intergenic
AAGGACAGTGTAATCACCAG+CGG	0.694966	1.4:+418216	None:intergenic
AAGTGGATAAATGTCACCAT+AGG	0.607359	1.4:+419443	None:intergenic
AAGTTCTTTCCAGGTGGAAT+GGG	0.445944	1.4:+418376	None:intergenic
AATCCTGTACTCACCTCCAC+CGG	0.553249	1.4:-417651	MS.gene88984:CDS
AATGGAGCGGGCTTGGTTCA+AGG	0.421159	1.4:+417551	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATGACATAAAAACAGGAA+TGG	-	chr1.4:417907-417926	MS.gene88984:intron	30.0%
ACATGACATGACATAAAAAC+AGG	-	chr1.4:417902-417921	MS.gene88984:intron	30.0%
ACTAACCATGAAATGAGAAA+AGG	+	chr1.4:417171-417190	None:intergenic	30.0%
ACTACTATTTCACGTAATCA+AGG	+	chr1.4:417785-417804	None:intergenic	30.0%
AGGCTTAGAATATCAAATGT+GGG	-	chr1.4:418497-418516	MS.gene88984:intron	30.0%
AGTAATGCATTCTTAGGAAT+AGG	+	chr1.4:419509-419528	None:intergenic	30.0%
ATATGAAGATATCAAACGTG+TGG	+	chr1.4:417332-417351	None:intergenic	30.0%
ATGTATGTAAAGTTCTTTCC+AGG	+	chr1.4:417994-418013	None:intergenic	30.0%
CATTGATAAGAATTCCATCA+GGG	+	chr1.4:418312-418331	None:intergenic	30.0%
CTTCAAGTGAAAGATCAAAT+TGG	-	chr1.4:418015-418034	MS.gene88984:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	416812	419568	416812	ID=MS.gene88984
chr1.4	mRNA	416812	419568	416812	ID=MS.gene88984.t1;Parent=MS.gene88984
chr1.4	exon	419428	419568	419428	ID=MS.gene88984.t1.exon1;Parent=MS.gene88984.t1
chr1.4	CDS	419428	419568	419428	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1
chr1.4	exon	419196	419305	419196	ID=MS.gene88984.t1.exon2;Parent=MS.gene88984.t1
chr1.4	CDS	419196	419305	419196	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1
chr1.4	exon	418186	418456	418186	ID=MS.gene88984.t1.exon3;Parent=MS.gene88984.t1
chr1.4	CDS	418186	418456	418186	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1
chr1.4	exon	418010	418112	418010	ID=MS.gene88984.t1.exon4;Parent=MS.gene88984.t1
chr1.4	CDS	418010	418112	418010	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1
chr1.4	exon	417183	417894	417183	ID=MS.gene88984.t1.exon5;Parent=MS.gene88984.t1
chr1.4	CDS	417183	417894	417183	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1
chr1.4	exon	416812	417103	416812	ID=MS.gene88984.t1.exon6;Parent=MS.gene88984.t1
chr1.4	CDS	416812	417103	416812	ID=cds.MS.gene88984.t1;Parent=MS.gene88984.t1

Gene Sequence

>MS.gene88984

ATGGCACTGAACTTGGTGTTATTATGTGTTAGTGTTTACCTCTTTGCCATCACTACTACTATTGTTGCTGAAGATCCATACAGGTTCTTCAACTGGAACGTTACCTATGGTGACATTTATCCACTTGGTGTTCGCCAACAGGTATATTTATATTTCACTTTCATCCTTATACCTTATTGGATCTGAATCATTTTGATTAATTAATTGATTCATCAACTAGATAGACCAAAGTTAATTTGTTATGTTTTGTGACAAACTTGCAGGGAATACTTATCAATGGCCAATTCCCAGGACCAGACATTCATTCTGTGACAAATGATAATCTCATTATCAATGTCTTCAACAGCTTGGACGAACCTTTTCTCATTTCATGGTTAGTTAGTACCTTTCACATTTCTTTTTTCATCCATCCTAGCCTCTATCTATGTGTAAATAACAAAAAGAATTAAACACGAAAGCATGTTATGTTGTTAGAGTTGGTTTCTTTTAATGATGTTCCTGTTAGTTAGTTAGCTAGCCACACGTTTGATATCTTCATATTCATCATATCATACTACCTAGTACTACTACATTTTGGGATGTTTGTTTGTTGGGTCACACCACTTGTATTGTGTTGTGTGGCTGCAAAGGATAGGAAAATGATGAAACCTTACAAAACACACATACTATACTATCTTATCTCTTGTAGTACTATGCTGGTCATGGTGGGTCAATCCATTCCACCCAGATCTGCTAGCTTCACTTTTATATTCATTTATATGGAGATGGAAGACATTTTCACAAGTAATATTAATATTCAATTCCAAATTAAGTAATTGGCCAGCACTGCAATTTGGCTTTCTATACTTGCTTGCTTGCTTGCCTGCCTGCCTGCCTGCCTCAAAAGTCTTTTTAATTGGGTGGACCCCATTTACTTTATTCATGCTTTGCTGTTCTCCTCTAGCTAACCATCAAATTGAGCTAATTATCTCCTTGATTACGTGAAATAGTAGTATATTAGGGACCACTACTTTTTAAATTATTGTGAATTTGTGATAATACTAACTGATAAGACATATAACCTTGCAATTGATTAATAAATGATGACATGACATGACATGACATAAAAACAGGAATGGAGTCCAGCAAAGAAGGAACTCATACGAAGATGGAGTGTTTGGAACAACATGTCCCATTCCACCTGGAAAGAACTTTACATACATACTTCAAGTGAAAGATCAAATTGGTAGTTTCTATTATTTCCCATCTCTTGGATTCCACAAAGCTGCTGGTGGTTTTGGAGGAATTAGAATCCTAAGTACGCCAAGAATTCCAGTTCCCTTCGATGATCCCGCTGGTGATTACACTGTCCTTATTGGTGATTGGTACAAGTCCAACCACACGGTAACTAATCATTTACTATCTTCATCATCAATTTCATTTTCAATAAAATTGATTGTATTGTATTATGTGACAGGATTTGAAGGCCCAACTTGATAACGGAAACAAGTTACCTTTCCCTGATGGAATTCTTATCAATGGTCGTGGGTCTGGAGGATCATCTCTCAATGTGGAGCAAGGTACTGCATTACCTACATGAATAAGACTCATATAATGTTTCATTTGGCTTTCCTCAACATTAGTACTAAATTTGACACAACTAATATTTTTTGGCCCTTGTCATTGATGTTACAGGAAAGACTTACAGGCTTAGAATATCAAATGTGGGATCGGAAAATTCACTCAACTTTCGCATACAGAATCACAAGATGAAGCTGGTAGAAGTGGAAGGAACACACACCCTCCAAACCACCTACTCCTCCCTTGACGTTCACGTGGGTCAATCATACTCAGTTCTAGTAACCGCGGATCAACCTGGTCAAGACTATTATATTGTTGTTTCCTCTCGATTTACCAATCCTGTACTCACCTCCACCGGAATTCTTCGCTACAGCAACTCTGCAGGTCCAGTTTCAGGTCCACCCCCTGGTGGACCCACCATCCAAATTGATTGGTCCTTGAACCAAGCCCGCTCCATTAGGACAAACCTGACAGCAAGTGGACCAAGACCAAACCCGCAAGGATCATACCATTATGGCATGATAAACTTAACGAGGACAATTGTGCTATCAAGTTCAGCTGGACAAGTTAATGGGAAACAAAGATACGCAATTAACAGTGTGTCTTATGTTGCCCCCGATACTCCTCTTAAGCTGGCTGACTTCTTCAAGATAGCAGGTGTTTACCGTCCTGGAAGCATCTCTGATAGACCTAGTGGTGGTGGTATTTATCTCGACACTTCTGTTATGCAAACTGACTATAGAACATTTGTTGAGATTGTTTTCCAAAATGATGAAGACATCCTTCAGAGCTATCATCTTGATGGCTACTCTTTCTTTGTTGTTGGGTGAGTATGATTTTCCATCATATAGATCATTTTCATTTCTTTAAAATCAGTCTAATCTATATATGAATGTTGCATGCAGTATGGATGGAGGACAATGGACAAGTGATAAAAGGAACCAGTACAATCTTAGAGACGCAGTTTCGCGTTCCACCACTCAGGTATATCCAAAGTCATGGACTGCTATCTATGTTGCACTTGACAATGTAGGAATGTGGAACTTGAGGTCAGAATTTTGGGCACGACAATATCTCGGGCAACAGTTTTATATGCGTGTATACACAACATCAACATCACTCAGAGATGAATACCCTATTCCTAAGAATGCATTACTTTGTGGTAGGGCAACTGGAAGACATACTCGACCCCTTTGA

Protein sequence

>MS.gene88984.t1

MALNLVLLCVSVYLFAITTTIVAEDPYRFFNWNVTYGDIYPLGVRQQGILINGQFPGPDIHSVTNDNLIINVFNSLDEPFLISWNGVQQRRNSYEDGVFGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLGFHKAAGGFGGIRILSTPRIPVPFDDPAGDYTVLIGDWYKSNHTDLKAQLDNGNKLPFPDGILINGRGSGGSSLNVEQGKTYRLRISNVGSENSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPGQDYYIVVSSRFTNPVLTSTGILRYSNSAGPVSGPPPGGPTIQIDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINLTRTIVLSSSAGQVNGKQRYAINSVSYVAPDTPLKLADFFKIAGVYRPGSISDRPSGGGIYLDTSVMQTDYRTFVEIVFQNDEDILQSYHLDGYSFFVVGMDGGQWTSDKRNQYNLRDAVSRSTTQVYPKSWTAIYVALDNVGMWNLRSEFWARQYLGQQFYMRVYTTSTSLRDEYPIPKNALLCGRATGRHTRPL