AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050133


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050133.t1 MTR_4g059390 98.246 285 5 0 1 285 1 285 0.0 571
MS.gene050133.t1 MTR_2g094270 85.017 287 41 2 1 285 1 287 1.31e-180 499
MS.gene050133.t1 MTR_7g101190 80.702 285 55 0 1 285 1 285 2.12e-173 480
MS.gene050133.t1 MTR_3g118010 77.695 269 54 1 16 284 14 276 1.50e-155 435
MS.gene050133.t1 MTR_2g094270 84.000 250 38 2 1 248 1 250 2.06e-154 432
MS.gene050133.t1 MTR_4g059390 99.010 202 2 0 1 202 1 202 6.67e-147 410
MS.gene050133.t1 MTR_8g098375 67.293 266 80 2 12 276 25 284 7.04e-132 375
MS.gene050133.t1 MTR_5g082070 68.015 272 80 3 7 277 23 288 4.96e-131 373
MS.gene050133.t1 MTR_5g010150 68.165 267 78 2 12 277 25 285 7.32e-131 373
MS.gene050133.t1 MTR_4g415300 66.171 269 85 1 9 277 26 288 1.22e-130 372
MS.gene050133.t1 MTR_3g070210 65.217 276 89 2 3 277 19 288 2.71e-130 371
MS.gene050133.t1 MTR_1g095070 83.163 196 33 0 89 284 23 218 1.40e-119 342
MS.gene050133.t1 MTR_3g070210 66.000 250 78 2 3 251 19 262 2.36e-116 336
MS.gene050133.t1 MTR_1g095070 84.375 160 25 0 89 248 23 182 8.32e-97 283
MS.gene050133.t1 MTR_8g098375 62.085 211 71 3 12 219 25 229 7.83e-90 267
MS.gene050133.t1 MTR_3g070210 64.179 201 65 2 3 202 19 213 4.05e-88 261
MS.gene050133.t1 MTR_5g010150 67.188 192 56 2 12 202 25 210 4.99e-87 259
MS.gene050133.t1 MTR_4g415300 64.948 194 62 1 9 202 26 213 5.54e-87 259
MS.gene050133.t1 MTR_2g101370 38.494 239 125 6 39 273 20 240 3.52e-39 137
MS.gene050133.t1 MTR_8g013680 39.224 232 119 6 39 266 19 232 3.64e-36 130
MS.gene050133.t1 MTR_5g012810 37.712 236 130 5 39 273 19 238 1.03e-34 126
MS.gene050133.t1 MTR_1g077540 36.052 233 133 6 39 270 21 238 3.87e-32 119
MS.gene050133.t1 MTR_7g103030 33.600 250 149 6 30 278 12 245 1.22e-31 118
MS.gene050133.t1 MTR_1g115405 35.366 246 135 7 30 270 12 238 2.74e-31 117
MS.gene050133.t1 MTR_4g063090 33.610 241 135 7 44 278 26 247 2.51e-30 114
MS.gene050133.t1 MTR_6g069040 36.179 246 135 6 29 270 11 238 4.45e-30 114
MS.gene050133.t1 MTR_1g006590 33.462 260 134 11 30 278 10 241 3.47e-29 111
MS.gene050133.t1 MTR_1g006490 34.263 251 130 11 30 271 10 234 4.28e-28 108
MS.gene050133.t1 MTR_7g023350 34.728 239 132 7 39 272 21 240 4.75e-27 106
MS.gene050133.t1 MTR_2g060360 34.426 244 138 8 30 270 11 235 4.39e-23 95.5
MS.gene050133.t1 MTR_5g079570 30.208 192 114 5 82 269 73 248 2.69e-19 85.5
MS.gene050133.t1 MTR_8g087710 30.222 225 132 7 37 259 37 238 5.83e-19 84.7
MS.gene050133.t1 MTR_4g075570 26.641 259 156 8 22 259 27 272 9.05e-18 82.4
MS.gene050133.t1 MTR_4g075590 27.309 249 154 8 27 261 25 260 1.11e-17 81.6
MS.gene050133.t1 MTR_5g063930 29.381 194 124 4 78 269 65 247 1.40e-17 80.9
MS.gene050133.t1 MTR_2g017660 29.487 234 138 7 39 269 39 248 2.81e-17 80.1
MS.gene050133.t1 MTR_4g084880 30.220 182 107 4 82 259 71 236 4.35e-17 79.7
MS.gene050133.t1 MTR_3g008920 28.646 192 117 5 82 269 59 234 3.56e-16 77.0
MS.gene050133.t1 MTR_8g087720 28.452 239 143 7 36 271 35 248 7.75e-16 75.9
MS.gene050133.t1 MTR_2g104940 28.899 218 131 7 43 259 84 278 1.70e-15 75.5
MS.gene050133.t1 MTR_7g010650 27.753 227 134 6 37 259 35 235 2.64e-15 74.7
MS.gene050133.t1 MTR_4g006730 27.206 272 153 9 21 282 68 304 2.71e-15 75.1
MS.gene050133.t1 MTR_2g017620 28.444 225 136 6 37 259 22 223 6.78e-15 73.2
MS.gene050133.t1 MTR_2g017620 28.444 225 136 6 37 259 36 237 8.40e-15 73.2
MS.gene050133.t1 MTR_2g017590 29.412 238 140 8 37 271 34 246 1.34e-14 72.4
MS.gene050133.t1 MTR_4g006630 28.889 180 115 4 80 259 20 186 1.84e-13 68.6
MS.gene050133.t1 MTR_4g006730 28.889 180 115 4 80 259 20 186 1.84e-13 68.6
MS.gene050133.t1 MTR_2g017610 30.928 194 113 7 82 271 72 248 2.12e-13 68.9
MS.gene050133.t1 MTR_1g097840 26.506 249 160 7 36 283 71 297 2.94e-13 68.9
MS.gene050133.t1 MTR_2g017570 29.534 193 117 6 82 271 72 248 4.73e-13 68.2
MS.gene050133.t1 MTR_2g017620 30.588 170 102 4 92 259 1 156 9.15e-13 65.9
MS.gene050133.t1 MTR_1g070385 26.050 238 149 6 36 271 59 271 3.66e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050133.t1 AT2G37170 79.649 285 56 1 1 285 44 326 1.30e-168 470
MS.gene050133.t1 AT5G60660 79.152 283 59 0 1 283 1 283 1.43e-168 468
MS.gene050133.t1 AT2G37170 79.649 285 56 1 1 285 1 283 5.46e-168 467
MS.gene050133.t1 AT2G37180 78.596 285 59 1 1 285 1 283 3.79e-165 459
MS.gene050133.t1 AT3G53420 77.895 285 63 0 1 285 1 285 1.14e-163 456
MS.gene050133.t1 AT3G53420 77.895 285 63 0 1 285 1 285 1.14e-163 456
MS.gene050133.t1 AT4G35100 77.224 281 57 2 6 285 4 278 4.50e-159 444
MS.gene050133.t1 AT4G35100 77.224 281 57 2 6 285 4 278 4.50e-159 444
MS.gene050133.t1 AT2G39010 74.296 284 72 1 1 284 1 283 9.75e-159 443
MS.gene050133.t1 AT3G54820 74.648 284 71 1 1 284 1 283 4.15e-158 442
MS.gene050133.t1 AT2G16850 76.344 279 59 2 6 284 4 275 5.01e-155 434
MS.gene050133.t1 AT4G00430 67.897 271 81 1 7 277 21 285 9.23e-133 377
MS.gene050133.t1 AT2G45960 68.182 264 78 1 14 277 27 284 3.10e-130 371
MS.gene050133.t1 AT4G23400 67.669 266 80 1 12 277 26 285 3.70e-124 356
MS.gene050133.t1 AT1G01620 69.084 262 75 1 16 277 29 284 5.36e-124 355
MS.gene050133.t1 AT3G61430 67.424 264 80 1 14 277 27 284 1.94e-122 351
MS.gene050133.t1 AT3G61430 67.424 264 80 1 14 277 27 284 1.94e-122 351
MS.gene050133.t1 AT2G45960 70.213 235 64 1 14 248 27 255 2.91e-117 338
MS.gene050133.t1 AT2G45960 70.213 235 64 1 14 248 27 255 3.73e-116 336
MS.gene050133.t1 AT1G01620 73.892 203 53 0 75 277 10 212 2.23e-107 310
MS.gene050133.t1 AT2G39010 72.772 202 54 1 1 202 1 201 4.78e-106 307
MS.gene050133.t1 AT4G00430 67.692 195 57 1 12 206 26 214 6.80e-90 266
MS.gene050133.t1 AT3G16240 39.669 242 120 7 39 274 19 240 5.27e-37 132
MS.gene050133.t1 AT5G47450 37.959 245 124 7 36 273 16 239 4.55e-36 129
MS.gene050133.t1 AT3G26520 35.510 245 136 8 30 270 13 239 4.81e-33 122
MS.gene050133.t1 AT1G73190 36.290 248 135 7 30 270 15 246 1.06e-32 121
MS.gene050133.t1 AT4G17340 36.842 247 118 7 39 273 19 239 2.81e-32 119
MS.gene050133.t1 AT4G01470 34.677 248 138 6 31 273 13 241 8.54e-32 118
MS.gene050133.t1 AT1G17810 35.484 248 137 7 30 270 15 246 5.03e-31 117
MS.gene050133.t1 AT2G36830 34.156 243 136 7 30 267 12 235 1.21e-30 115
MS.gene050133.t1 AT2G25810 35.081 248 129 11 30 270 10 232 3.20e-26 103
MS.gene050133.t1 AT3G47440 31.780 236 138 7 39 270 23 239 4.25e-24 98.6
MS.gene050133.t1 AT4G19030 28.030 264 159 8 3 259 22 261 3.47e-17 80.1
MS.gene050133.t1 AT1G31885 28.794 257 148 8 24 273 34 262 4.04e-17 80.5
MS.gene050133.t1 AT5G37820 28.571 189 121 4 82 269 77 252 6.96e-15 73.6
MS.gene050133.t1 AT5G37810 27.128 188 125 3 82 269 77 252 8.38e-15 73.2
MS.gene050133.t1 AT5G37820 28.571 189 121 4 82 269 113 288 1.05e-14 73.6
MS.gene050133.t1 AT1G31885 29.557 203 123 6 78 273 19 208 4.76e-14 70.9
MS.gene050133.t1 AT2G34390 26.616 263 155 10 15 269 31 263 5.27e-14 71.2
MS.gene050133.t1 AT4G10380 26.877 253 155 9 36 282 75 303 7.32e-14 70.9
MS.gene050133.t1 AT2G34390 28.141 199 123 5 78 269 36 221 1.83e-13 68.9
MS.gene050133.t1 AT3G06100 28.205 234 141 8 39 269 46 255 4.53e-12 65.5
MS.gene050133.t1 AT4G18910 25.483 259 171 6 5 259 18 258 6.47e-12 65.1
MS.gene050133.t1 AT3G06100 29.185 233 134 10 42 269 1 207 7.69e-11 61.2

Find 89 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGGTATTGCTTGGGCTTT+TGG 0.189425 4.2:+44220311 MS.gene050133:CDS
CTGTGATGGTGTTGGAATTT+TGG 0.191069 4.2:+44220292 MS.gene050133:CDS
TCTACAACGACGGCAAAATT+TGG 0.232790 4.2:+44221464 MS.gene050133:CDS
GAGTCCCTAGCGTTTCTCTT+AGG 0.240191 4.2:-44221219 None:intergenic
GAAGGATCCAAGAGCTTTAA+TGG 0.276736 4.2:-44222166 None:intergenic
GTGATGAACAGTGGATATTC+TGG 0.300046 4.2:+44222079 MS.gene050133:intron
ATCAACCCTGCCGTGACATT+CGG 0.320599 4.2:+44220964 MS.gene050133:CDS
ATTAACCCGGCAAGAAGTTT+CGG 0.346372 4.2:+44221430 MS.gene050133:CDS
TTCTGGGTTGGTCCAATGAT+TGG 0.360668 4.2:+44222096 MS.gene050133:CDS
AAAGCATACTTTGACAGATA+TGG 0.361824 4.2:+44221090 MS.gene050133:CDS
TTAAAGCTCTTGGATCCTTC+AGG 0.374939 4.2:+44222169 MS.gene050133:CDS
CAGTCAGTACCACCAGCTTT+AGG 0.379125 4.2:-44220272 None:intergenic
ACGGAAGGTGTCCTTGATTA+GGG 0.379672 4.2:+44220999 MS.gene050133:CDS
GACGGAAGGTGTCCTTGATT+AGG 0.381530 4.2:+44220998 MS.gene050133:CDS
TTAATACCGGTGCCGGTAAT+CGG 0.383368 4.2:-44221412 None:intergenic
TACAACAAAGGCACAGCTTT+AGG 0.394600 4.2:+44221141 MS.gene050133:CDS
GCTGATCCGAAACTTCTTGC+CGG 0.395043 4.2:-44221436 None:intergenic
GCCACAGCAGCTCCAATCAT+TGG 0.399751 4.2:-44222108 None:intergenic
TACTGCACCGCCGGTATCTC+TGG 0.401254 4.2:+44220356 MS.gene050133:CDS
AGTCCCTAGCGTTTCTCTTA+GGG 0.401907 4.2:-44221218 None:intergenic
CTACAACGACGGCAAAATTT+GGG 0.406415 4.2:+44221465 MS.gene050133:CDS
TGGTCAAAACAGTGACATAA+AGG 0.409034 4.2:-44220223 None:intergenic
GGTTCAGCCATTAAAGCTCT+TGG 0.411321 4.2:+44222159 MS.gene050133:CDS
TAATACCGGTGCCGGTAATC+GGG 0.412842 4.2:-44221411 None:intergenic
TCAACCCTGCCGTGACATTC+GGG 0.414133 4.2:+44220965 MS.gene050133:CDS
ATGATTGGAGCTGCTGTGGC+TGG 0.418679 4.2:+44222111 MS.gene050133:CDS
CGGCAAAATTTGGGATGATC+AGG 0.438644 4.2:+44221474 MS.gene050133:CDS
TTGGAAACCTTTGGCAAGTC+CGG 0.439461 4.2:-44221067 None:intergenic
TTGGCTACTATCCCGATTAC+CGG 0.446732 4.2:+44221400 MS.gene050133:CDS
TCTATCAATGGTGCTGGAGG+TGG 0.446868 4.2:-44220131 None:intergenic
GCTTTAGGTGCTGAAATCAT+TGG 0.457763 4.2:+44221156 MS.gene050133:CDS
ACTTCTTGCCGGGTTAATAC+CGG 0.464164 4.2:-44221425 None:intergenic
ATTCATGATGGCTACAACAA+AGG 0.473294 4.2:+44221129 MS.gene050133:CDS
TGATGAACAGTGGATATTCT+GGG 0.485567 4.2:+44222080 MS.gene050133:intron
CTGAACCTCTTAGAATGTAT+TGG 0.489928 4.2:-44222143 None:intergenic
TACATGGCAGCACAGTGTGC+CGG 0.490463 4.2:+44221030 MS.gene050133:CDS
CTGATCCGAAACTTCTTGCC+GGG 0.491559 4.2:-44221435 None:intergenic
CTGGTGACTATAACCAATAA+TGG 0.494832 4.2:-44220243 None:intergenic
ATCCTTGTTTACTGCACCGC+CGG 0.495855 4.2:+44220347 MS.gene050133:CDS
TGCCGGGTTAATACCGGTGC+CGG 0.514335 4.2:-44221419 None:intergenic
GCCGGCGCAATCTGTGGTAC+CGG 0.516181 4.2:+44221048 MS.gene050133:CDS
CGTGACATTCGGGCTATTCG+TGG 0.516571 4.2:+44220975 MS.gene050133:CDS
AACTCCTCAACATCTATCAA+TGG 0.521123 4.2:-44220143 None:intergenic
TCAACATCTATCAATGGTGC+TGG 0.524124 4.2:-44220137 None:intergenic
GTAAAACACTGCCCTAATCA+AGG 0.525985 4.2:-44221010 None:intergenic
TACCACCAATACATTCTAAG+AGG 0.529657 4.2:+44222138 MS.gene050133:CDS
TCCAATGATTGGAGCTGCTG+TGG 0.531304 4.2:+44222107 MS.gene050133:CDS
GTAGCCATCATGAATAAAGT+TGG 0.531597 4.2:-44221121 None:intergenic
GGTGCCAACTTTATTCATGA+TGG 0.535166 4.2:+44221117 MS.gene050133:CDS
TTATAGCATACCAGAGATAC+CGG 0.539251 4.2:-44220366 None:intergenic
CTATCAATGGTGCTGGAGGT+GGG 0.552912 4.2:-44220130 None:intergenic
AATAGCCCGAATGTCACGGC+AGG 0.553742 4.2:-44220970 None:intergenic
ATGAAAACAGCAAATCCAAT+GGG 0.555341 4.2:-44221370 None:intergenic
CACCAGTCTGATCCTAAAGC+TGG 0.557436 4.2:+44220260 MS.gene050133:CDS
TAATTAAGCATTGCTCCTGA+AGG 0.559103 4.2:-44222184 None:intergenic
AACCTCTTAGAATGTATTGG+TGG 0.561973 4.2:-44222140 None:intergenic
CGGGCTATTCGTGGGACGGA+AGG 0.562748 4.2:+44220984 MS.gene050133:CDS
GGTACTGACTGTGATGGTGT+TGG 0.572709 4.2:+44220284 MS.gene050133:CDS
ACAGCAAATCCAATGGGAAG+TGG 0.574194 4.2:-44221364 None:intergenic
AGCACCATTGATAGATGTTG+AGG 0.575497 4.2:+44220139 MS.gene050133:CDS
TACCGGCGGTGCAGTAAACA+AGG 0.576199 4.2:-44220349 None:intergenic
GATGTTGAGGTTCAAGAACA+AGG 0.576725 4.2:+44220080 MS.gene050133:CDS
CAGTGTGCCGGCGCAATCTG+TGG 0.577018 4.2:+44221042 MS.gene050133:CDS
TTTGCCGTCGTTGTAGATCA+CGG 0.578627 4.2:-44221458 None:intergenic
CACGAATAGCCCGAATGTCA+CGG 0.582521 4.2:-44220974 None:intergenic
ATTATATGCTTACAGGAACA+TGG 0.583004 4.2:-44221242 None:intergenic
CAATATGGCTAAAGATGTTG+AGG 0.583700 4.2:+44220067 None:intergenic
ACATCTATCAATGGTGCTGG+AGG 0.589837 4.2:-44220134 None:intergenic
TACCGGCACCGGTATTAACC+CGG 0.590468 4.2:+44221417 MS.gene050133:CDS
TGTGGTACCGGACTTGCCAA+AGG 0.598591 4.2:+44221060 MS.gene050133:CDS
CATGAAAACAGCAAATCCAA+TGG 0.600094 4.2:-44221371 None:intergenic
TACTTTGACAGATATGGAGG+TGG 0.607215 4.2:+44221096 MS.gene050133:CDS
GTGACATTCGGGCTATTCGT+GGG 0.608893 4.2:+44220976 MS.gene050133:CDS
CACCAGCTTTAGGATCAGAC+TGG 0.622507 4.2:-44220262 None:intergenic
CTGACCCTAAGAGAAACGCT+AGG 0.623716 4.2:+44221214 MS.gene050133:CDS
TCCGGTACCACAGATTGCGC+CGG 0.626783 4.2:-44221049 None:intergenic
TCAGCCGTGATCTACAACGA+CGG 0.628333 4.2:+44221454 MS.gene050133:CDS
GACAGTGTAGACAAGAACAA+AGG 0.629321 4.2:-44221181 None:intergenic
GCATACTTTGACAGATATGG+AGG 0.633916 4.2:+44221093 MS.gene050133:CDS
CATTCGGGCTATTCGTGGGA+CGG 0.637960 4.2:+44220980 MS.gene050133:CDS
TTATATGCTTACAGGAACAT+GGG 0.643732 4.2:-44221241 None:intergenic
CAGTCTGATCCTAAAGCTGG+TGG 0.645930 4.2:+44220263 MS.gene050133:CDS
TGACCCTAAGAGAAACGCTA+GGG 0.652651 4.2:+44221215 MS.gene050133:CDS
GCTGGTGGTACTGACTGTGA+TGG 0.654915 4.2:+44220278 MS.gene050133:CDS
ACTATCCCGATTACCGGCAC+CGG 0.654923 4.2:+44221406 MS.gene050133:CDS
GAACAGTGGATATTCTGGGT+TGG 0.667916 4.2:+44222084 MS.gene050133:intron
ATAGCCCGAATGTCACGGCA+GGG 0.681726 4.2:-44220969 None:intergenic
ATGTTGAGGAGTTAACAAAG+TGG 0.737517 4.2:+44220153 MS.gene050133:CDS
TAGCATACCAGAGATACCGG+CGG 0.755151 4.2:-44220363 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAAATTTGCTATTAAATT+TGG + chr4.2:44220423-44220442 MS.gene050133:intron 10.0%
!!! ATAAATTTACTAGTATTTTA+TGG + chr4.2:44220873-44220892 MS.gene050133:intron 10.0%
!! TGATAAAATACAAACAAATA+TGG - chr4.2:44220714-44220733 None:intergenic 15.0%
!!! TAGTCTAGAATTTATTTTTA+AGG + chr4.2:44221673-44221692 MS.gene050133:intron 15.0%
!! AGTACTTATTATGAAGAAAA+AGG - chr4.2:44221294-44221313 None:intergenic 20.0%
!! CATTCAATTAATGATGTATA+TGG + chr4.2:44221925-44221944 MS.gene050133:intron 20.0%
!! CATTCATTAAATGATGTATA+TGG - chr4.2:44221964-44221983 None:intergenic 20.0%
!! GTTTATAATTATATGCTTAC+AGG - chr4.2:44221252-44221271 None:intergenic 20.0%
!!! ATTTTACAACCGTTTATTTA+AGG + chr4.2:44221544-44221563 MS.gene050133:intron 20.0%
!!! ATTTTGCTTATATAAATGAC+CGG + chr4.2:44221999-44222018 MS.gene050133:intron 20.0%
!!! TCACAATATGAAAGTTTTAT+AGG + chr4.2:44220649-44220668 MS.gene050133:intron 20.0%
!!! TTTTATGGATAAATGTTAGT+TGG + chr4.2:44220888-44220907 MS.gene050133:intron 20.0%
! TATATTAACGAGTTTATGTG+TGG + chr4.2:44220919-44220938 MS.gene050133:intron 25.0%
AAAGCATACTTTGACAGATA+TGG + chr4.2:44221090-44221109 MS.gene050133:CDS 30.0%
AGCATAACTAACTATGTGTT+TGG + chr4.2:44221317-44221336 MS.gene050133:intron 30.0%
ATGAAAACAGCAAATCCAAT+GGG - chr4.2:44221373-44221392 None:intergenic 30.0%
ATTATATGCTTACAGGAACA+TGG - chr4.2:44221245-44221264 None:intergenic 30.0%
ATTTAAGGAGACTTAGGTTT+AGG + chr4.2:44221559-44221578 MS.gene050133:intron 30.0%
CAAAATGAGCAACTTTACAT+TGG - chr4.2:44221806-44221825 None:intergenic 30.0%
CCTAAGTCTCCTTAAATAAA+CGG - chr4.2:44221556-44221575 None:intergenic 30.0%
GTTGTAGTTACAATTAAGCT+AGG - chr4.2:44220750-44220769 None:intergenic 30.0%
TGAAGCATAATTCCATATTG+CGG + chr4.2:44220626-44220645 MS.gene050133:intron 30.0%
TTATATGCTTACAGGAACAT+GGG - chr4.2:44221244-44221263 None:intergenic 30.0%
! ATCTGTCAAAGTATGCTTTT+TGG - chr4.2:44221089-44221108 None:intergenic 30.0%
! CAATGTAAAGTTGCTCATTT+TGG + chr4.2:44221804-44221823 MS.gene050133:intron 30.0%
! GGAGGGTGTATTTAAAAATA+GGG - chr4.2:44221869-44221888 None:intergenic 30.0%
! GTGAAATGATGAAAAGGTTT+TGG + chr4.2:44221339-44221358 MS.gene050133:intron 30.0%
! GTTTTGCTTATAATAGTGAC+CGG - chr4.2:44221890-44221909 None:intergenic 30.0%
! TGTTTGGTGAAATGATGAAA+AGG + chr4.2:44221333-44221352 MS.gene050133:intron 30.0%
!!! ATTGTTTTTGTGATGAACAG+TGG + chr4.2:44222070-44222089 MS.gene050133:intron 30.0%
!!! CTATTTTTAAATACACCCTC+CGG + chr4.2:44221868-44221887 MS.gene050133:intron 30.0%
!!! TTCATCTTCTTTTTCGATCA+GGG - chr4.2:44220554-44220573 None:intergenic 30.0%
!!! TTTCATCTTCTTTTTCGATC+AGG - chr4.2:44220555-44220574 None:intergenic 30.0%
AACCTCTTAGAATGTATTGG+TGG - chr4.2:44222143-44222162 None:intergenic 35.0%
AACTCCTCAACATCTATCAA+TGG - chr4.2:44220146-44220165 None:intergenic 35.0%
ATGTTGAGGAGTTAACAAAG+TGG + chr4.2:44220153-44220172 MS.gene050133:CDS 35.0%
ATTCATGATGGCTACAACAA+AGG + chr4.2:44221129-44221148 MS.gene050133:CDS 35.0%
CATGAAAACAGCAAATCCAA+TGG - chr4.2:44221374-44221393 None:intergenic 35.0%
CCGTTTATTTAAGGAGACTT+AGG + chr4.2:44221553-44221572 MS.gene050133:intron 35.0%
CTGAACCTCTTAGAATGTAT+TGG - chr4.2:44222146-44222165 None:intergenic 35.0%
CTGAGATAGTAAAAGATTGC+AGG + chr4.2:44220509-44220528 MS.gene050133:intron 35.0%
CTGGTGACTATAACCAATAA+TGG - chr4.2:44220246-44220265 None:intergenic 35.0%
GTAGCCATCATGAATAAAGT+TGG - chr4.2:44221124-44221143 None:intergenic 35.0%
TACCACCAATACATTCTAAG+AGG + chr4.2:44222138-44222157 MS.gene050133:CDS 35.0%
TGATGAACAGTGGATATTCT+GGG + chr4.2:44222080-44222099 MS.gene050133:intron 35.0%
TGGTCAAAACAGTGACATAA+AGG - chr4.2:44220226-44220245 None:intergenic 35.0%
TTATAGCATACCAGAGATAC+CGG - chr4.2:44220369-44220388 None:intergenic 35.0%
TTATTATCACATACAGCCTC+CGG - chr4.2:44222021-44222040 None:intergenic 35.0%
TTCATATTGTGACCGCAATA+TGG - chr4.2:44220641-44220660 None:intergenic 35.0%
TTCCTTAACATGTGCATCAA+GGG - chr4.2:44221715-44221734 None:intergenic 35.0%
TTGCTTATATAAATGACCGG+AGG + chr4.2:44222002-44222021 MS.gene050133:intron 35.0%
! CGGAGGGTGTATTTAAAAAT+AGG - chr4.2:44221870-44221889 None:intergenic 35.0%
!! GTATGCTTTTTGGAAACCTT+TGG - chr4.2:44221079-44221098 None:intergenic 35.0%
!! TGGAATTTTGGGTATTGCTT+GGG + chr4.2:44220304-44220323 MS.gene050133:CDS 35.0%
!! TGTGATGGTGTTGGAATTTT+GGG + chr4.2:44220293-44220312 MS.gene050133:CDS 35.0%
!! TTGGAATTTTGGGTATTGCT+TGG + chr4.2:44220303-44220322 MS.gene050133:CDS 35.0%
!!! CATTGGATTTGCTGTTTTCA+TGG + chr4.2:44221372-44221391 MS.gene050133:CDS 35.0%
!!! GTCACTGTTTTGACCATTAT+TGG + chr4.2:44220230-44220249 MS.gene050133:CDS 35.0%
AGCACCATTGATAGATGTTG+AGG + chr4.2:44220139-44220158 MS.gene050133:CDS 40.0%
ATGGCATGCAACCACAATTA+GGG - chr4.2:44220695-44220714 None:intergenic 40.0%
ATTAACCCGGCAAGAAGTTT+CGG + chr4.2:44221430-44221449 MS.gene050133:CDS 40.0%
CTACAACGACGGCAAAATTT+GGG + chr4.2:44221465-44221484 MS.gene050133:CDS 40.0%
GACAGTGTAGACAAGAACAA+AGG - chr4.2:44221184-44221203 None:intergenic 40.0%
GATGTTGAGGTTCAAGAACA+AGG + chr4.2:44220080-44220099 MS.gene050133:CDS 40.0%
GCATACTTTGACAGATATGG+AGG + chr4.2:44221093-44221112 MS.gene050133:CDS 40.0%
GGTGCCAACTTTATTCATGA+TGG + chr4.2:44221117-44221136 MS.gene050133:CDS 40.0%
GTAAAACACTGCCCTAATCA+AGG - chr4.2:44221013-44221032 None:intergenic 40.0%
GTGATGAACAGTGGATATTC+TGG + chr4.2:44222079-44222098 MS.gene050133:intron 40.0%
GTTCCTTAACATGTGCATCA+AGG - chr4.2:44221716-44221735 None:intergenic 40.0%
TACTTTGACAGATATGGAGG+TGG + chr4.2:44221096-44221115 MS.gene050133:CDS 40.0%
TATGGCATGCAACCACAATT+AGG - chr4.2:44220696-44220715 None:intergenic 40.0%
TCAACATCTATCAATGGTGC+TGG - chr4.2:44220140-44220159 None:intergenic 40.0%
TCTACAACGACGGCAAAATT+TGG + chr4.2:44221464-44221483 MS.gene050133:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr4.2:44221886-44221905 None:intergenic 40.0%
TTAAAGCTCTTGGATCCTTC+AGG + chr4.2:44222169-44222188 MS.gene050133:CDS 40.0%
TTCCTTAACATGTGCCCTTA+GGG + chr4.2:44221828-44221847 MS.gene050133:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr4.2:44221887-44221906 None:intergenic 40.0%
TTTCCTTAACATGTGCCCTT+AGG + chr4.2:44221827-44221846 MS.gene050133:intron 40.0%
! GAAGGATCCAAGAGCTTTAA+TGG - chr4.2:44222169-44222188 None:intergenic 40.0%
! GATTAGGGCAGTGTTTTACA+TGG + chr4.2:44221014-44221033 MS.gene050133:CDS 40.0%
! TACAACAAAGGCACAGCTTT+AGG + chr4.2:44221141-44221160 MS.gene050133:CDS 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - chr4.2:44221845-44221864 None:intergenic 40.0%
!! CTGTGATGGTGTTGGAATTT+TGG + chr4.2:44220292-44220311 MS.gene050133:CDS 40.0%
!! GCTTTAGGTGCTGAAATCAT+TGG + chr4.2:44221156-44221175 MS.gene050133:CDS 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - chr4.2:44221846-44221865 None:intergenic 40.0%
!!! TGCTGTTTTCATGGTTCACT+TGG + chr4.2:44221381-44221400 MS.gene050133:CDS 40.0%
ACAGCAAATCCAATGGGAAG+TGG - chr4.2:44221367-44221386 None:intergenic 45.0%
ACTTCTTGCCGGGTTAATAC+CGG - chr4.2:44221428-44221447 None:intergenic 45.0%
AGTCCCTAGCGTTTCTCTTA+GGG - chr4.2:44221221-44221240 None:intergenic 45.0%
ATGTGTGGAATTGTGATCCC+AGG + chr4.2:44220934-44220953 MS.gene050133:intron 45.0%
CGACATAGCAACCCTAATTG+TGG + chr4.2:44220681-44220700 MS.gene050133:intron 45.0%
GAACAGTGGATATTCTGGGT+TGG + chr4.2:44222084-44222103 MS.gene050133:intron 45.0%
GGTTCAGCCATTAAAGCTCT+TGG + chr4.2:44222159-44222178 MS.gene050133:CDS 45.0%
TGACCCTAAGAGAAACGCTA+GGG + chr4.2:44221215-44221234 MS.gene050133:CDS 45.0%
TGCCCTTGATGCACATGTTA+AGG + chr4.2:44221710-44221729 MS.gene050133:intron 45.0%
TTGGAAACCTTTGGCAAGTC+CGG - chr4.2:44221070-44221089 None:intergenic 45.0%
TTGGCTACTATCCCGATTAC+CGG + chr4.2:44221400-44221419 MS.gene050133:CDS 45.0%
TTTGCCGTCGTTGTAGATCA+CGG - chr4.2:44221461-44221480 None:intergenic 45.0%
! ACATCTATCAATGGTGCTGG+AGG - chr4.2:44220137-44220156 None:intergenic 45.0%
! CGGCAAAATTTGGGATGATC+AGG + chr4.2:44221474-44221493 MS.gene050133:CDS 45.0%
!! ACGGAAGGTGTCCTTGATTA+GGG + chr4.2:44220999-44221018 MS.gene050133:CDS 45.0%
!! TTAATACCGGTGCCGGTAAT+CGG - chr4.2:44221415-44221434 None:intergenic 45.0%
!! TTCTGGGTTGGTCCAATGAT+TGG + chr4.2:44222096-44222115 MS.gene050133:CDS 45.0%
!! TTGGGTATTGCTTGGGCTTT+TGG + chr4.2:44220311-44220330 MS.gene050133:CDS 45.0%
!! TAATTAATAATTTAATGATA+TGG - chr4.2:44221507-44221526 None:intergenic 5.0%
ATCAACCCTGCCGTGACATT+CGG + chr4.2:44220964-44220983 MS.gene050133:CDS 50.0%
CACCAGTCTGATCCTAAAGC+TGG + chr4.2:44220260-44220279 MS.gene050133:CDS 50.0%
CACGAATAGCCCGAATGTCA+CGG - chr4.2:44220977-44220996 None:intergenic 50.0%
CAGTCAGTACCACCAGCTTT+AGG - chr4.2:44220275-44220294 None:intergenic 50.0%
CAGTCTGATCCTAAAGCTGG+TGG + chr4.2:44220263-44220282 MS.gene050133:CDS 50.0%
CTGACCCTAAGAGAAACGCT+AGG + chr4.2:44221214-44221233 MS.gene050133:CDS 50.0%
CTGATCCGAAACTTCTTGCC+GGG - chr4.2:44221438-44221457 None:intergenic 50.0%
GAGTCCCTAGCGTTTCTCTT+AGG - chr4.2:44221222-44221241 None:intergenic 50.0%
GCTGATCCGAAACTTCTTGC+CGG - chr4.2:44221439-44221458 None:intergenic 50.0%
GTGACATTCGGGCTATTCGT+GGG + chr4.2:44220976-44220995 MS.gene050133:CDS 50.0%
TAGCATACCAGAGATACCGG+CGG - chr4.2:44220366-44220385 None:intergenic 50.0%
TCAGCCGTGATCTACAACGA+CGG + chr4.2:44221454-44221473 MS.gene050133:CDS 50.0%
TCCAATGATTGGAGCTGCTG+TGG + chr4.2:44222107-44222126 MS.gene050133:CDS 50.0%
TGTGGAATTGTGATCCCAGG+AGG + chr4.2:44220937-44220956 MS.gene050133:intron 50.0%
! ATCCTTGTTTACTGCACCGC+CGG + chr4.2:44220347-44220366 MS.gene050133:CDS 50.0%
! CTATCAATGGTGCTGGAGGT+GGG - chr4.2:44220133-44220152 None:intergenic 50.0%
! GGTATTGCTTGGGCTTTTGG+TGG + chr4.2:44220314-44220333 MS.gene050133:CDS 50.0%
! TCTATCAATGGTGCTGGAGG+TGG - chr4.2:44220134-44220153 None:intergenic 50.0%
! TGCCCTAAGGGCACATGTTA+AGG - chr4.2:44221833-44221852 None:intergenic 50.0%
!! CACCAGCTTTAGGATCAGAC+TGG - chr4.2:44220265-44220284 None:intergenic 50.0%
!! GACGGAAGGTGTCCTTGATT+AGG + chr4.2:44220998-44221017 MS.gene050133:CDS 50.0%
!! GGTACTGACTGTGATGGTGT+TGG + chr4.2:44220284-44220303 MS.gene050133:CDS 50.0%
!! GTTTTGGCACCACTTCCCAT+TGG + chr4.2:44221355-44221374 MS.gene050133:CDS 50.0%
!! TAATACCGGTGCCGGTAATC+GGG - chr4.2:44221414-44221433 None:intergenic 50.0%
AATAGCCCGAATGTCACGGC+AGG - chr4.2:44220973-44220992 None:intergenic 55.0%
ACTATCCCGATTACCGGCAC+CGG + chr4.2:44221406-44221425 MS.gene050133:CDS 55.0%
ATAGCCCGAATGTCACGGCA+GGG - chr4.2:44220972-44220991 None:intergenic 55.0%
ATGATTGGAGCTGCTGTGGC+TGG + chr4.2:44222111-44222130 MS.gene050133:CDS 55.0%
CATTCGGGCTATTCGTGGGA+CGG + chr4.2:44220980-44220999 MS.gene050133:CDS 55.0%
CGTGACATTCGGGCTATTCG+TGG + chr4.2:44220975-44220994 MS.gene050133:CDS 55.0%
GCCACAGCAGCTCCAATCAT+TGG - chr4.2:44222111-44222130 None:intergenic 55.0%
TACATGGCAGCACAGTGTGC+CGG + chr4.2:44221030-44221049 MS.gene050133:CDS 55.0%
TACCGGCGGTGCAGTAAACA+AGG - chr4.2:44220352-44220371 None:intergenic 55.0%
TCAACCCTGCCGTGACATTC+GGG + chr4.2:44220965-44220984 MS.gene050133:CDS 55.0%
! TGTGGTACCGGACTTGCCAA+AGG + chr4.2:44221060-44221079 MS.gene050133:CDS 55.0%
!! CAGGGTTGATGTGTCCTCCT+GGG - chr4.2:44220954-44220973 None:intergenic 55.0%
!! GCTGGTGGTACTGACTGTGA+TGG + chr4.2:44220278-44220297 MS.gene050133:CDS 55.0%
!! TACCGGCACCGGTATTAACC+CGG + chr4.2:44221417-44221436 MS.gene050133:CDS 55.0%
TACTGCACCGCCGGTATCTC+TGG + chr4.2:44220356-44220375 MS.gene050133:CDS 60.0%
TCCGGTACCACAGATTGCGC+CGG - chr4.2:44221052-44221071 None:intergenic 60.0%
TGCCGGGTTAATACCGGTGC+CGG - chr4.2:44221422-44221441 None:intergenic 60.0%
!! GCAGGGTTGATGTGTCCTCC+TGG - chr4.2:44220955-44220974 None:intergenic 60.0%
CGGGCTATTCGTGGGACGGA+AGG + chr4.2:44220984-44221003 MS.gene050133:CDS 65.0%
GCCGGCGCAATCTGTGGTAC+CGG + chr4.2:44221048-44221067 MS.gene050133:CDS 65.0%
! CAGTGTGCCGGCGCAATCTG+TGG + chr4.2:44221042-44221061 MS.gene050133:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 44220071 44222203 44220071 ID=MS.gene050133
chr4.2 mRNA 44220071 44222203 44220071 ID=MS.gene050133.t1;Parent=MS.gene050133
chr4.2 exon 44220071 44220377 44220071 ID=MS.gene050133.t1.exon1;Parent=MS.gene050133.t1
chr4.2 CDS 44220071 44220377 44220071 ID=cds.MS.gene050133.t1;Parent=MS.gene050133.t1
chr4.2 exon 44220956 44221251 44220956 ID=MS.gene050133.t1.exon2;Parent=MS.gene050133.t1
chr4.2 CDS 44220956 44221251 44220956 ID=cds.MS.gene050133.t1;Parent=MS.gene050133.t1
chr4.2 exon 44221355 44221495 44221355 ID=MS.gene050133.t1.exon3;Parent=MS.gene050133.t1
chr4.2 CDS 44221355 44221495 44221355 ID=cds.MS.gene050133.t1;Parent=MS.gene050133.t1
chr4.2 exon 44222090 44222203 44222090 ID=MS.gene050133.t1.exon4;Parent=MS.gene050133.t1
chr4.2 CDS 44222090 44222203 44222090 ID=cds.MS.gene050133.t1;Parent=MS.gene050133.t1
Gene Sequence

>MS.gene050133

ATGGCTAAAGATGTTGAGGTTCAAGAACAAGGAGAATACTCAGCTAAAGACTATCAAGACCCACCTCCAGCACCATTGATAGATGTTGAGGAGTTAACAAAGTGGTCATTTTATAGAGCTCTTATAGCTGAGTTTGTTGCAACACTTCTCTTCCTTTATGTCACTGTTTTGACCATTATTGGTTATAGTCACCAGTCTGATCCTAAAGCTGGTGGTACTGACTGTGATGGTGTTGGAATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGTATGCTATAACTTCTTCTCACTCTCTTACACATGCAAAGACTTTATAAAATTTGCTATTAAATTTGGATATATGTTTGTATAAATCACTTAATGAGTTAGAATATTCGTAAAATAGTTCAATAACTGCAGCTGAGATAGTAAAAGATTGCAGGAACATTTGATATATTGAGACCCTGATCGAAAAAGAAGATGAAATAAACATTTTCGTATAACTATGAAGATGAAATAAACATTTTCGTATAATTATGAAGCATAATTCCATATTGCGGTCACAATATGAAAGTTTTATAGGTCTTTGCAACGACATAGCAACCCTAATTGTGGTTGCATGCCATATTTGTTTGTATTTTATCACAATATCAAAGTTCCTAGCTTAATTGTAACTACAACTAAAAATATGTTTTGAAGCTACTTTTTATAAGCTATTAGAAAAAGTTTACTAAATTAAGATCAGAAGAGTTTATGAAAATGTTGCAAGCTTTTTTTTTATTTTATAAATTTACTAGTATTTTATGGATAAATGTTAGTTGGTAGTATGTTATATTAACGAGTTTATGTGTGGAATTGTGATCCCAGGAGGACACATCAACCCTGCCGTGACATTCGGGCTATTCGTGGGACGGAAGGTGTCCTTGATTAGGGCAGTGTTTTACATGGCAGCACAGTGTGCCGGCGCAATCTGTGGTACCGGACTTGCCAAAGGTTTCCAAAAAGCATACTTTGACAGATATGGAGGTGGTGCCAACTTTATTCATGATGGCTACAACAAAGGCACAGCTTTAGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCTACTGACCCTAAGAGAAACGCTAGGGACTCCCATGTTCCTGTAAGCATATAATTATAAACTCAATTAACACACTCATCACCTTTTTCTTCATAATAAGTACTTTAAGCATAACTAACTATGTGTTTGGTGAAATGATGAAAAGGTTTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACTATCCCGATTACCGGCACCGGTATTAACCCGGCAAGAAGTTTCGGATCAGCCGTGATCTACAACGACGGCAAAATTTGGGATGATCAGGTAAACATCCATATCATTAAATTATTAATTAAAGTGACACTAATAACTATTTTACAACCGTTTATTTAAGGAGACTTAGGTTTAGGTCTCTTGTCTTATATTAGAGACAAACTTTATATTTTTCAGTTTTTTGTTTTTTGTTTAGTGCTAAAACAATCGTTTTCTTGAATTTTACAATAGTCTAGAATTTATTTTTAAGGCAAATGTTAACTTGTGCCCTTGATGCACATGTTAAGGAACTTATTATAGAAATATATGTATCAAAAGTCGTGTAATCAACTTTTTAAAAATTAAATTATCATGTTTTCCAATGTAAAGTTGCTCATTTTGGTTTCCTTAACATGTGCCCTTAGGGCACAAGTTAACATGACCCTATTTTTAAATACACCCTCCGGTCACTATTATAAGCAAAACTTTGCATTTTAGATTCATTCAATTAATGATGTATATGGTCTTTATTATAGACCATATACATCATTTAATGAATGAATTTAAAATGCAAAATTTTGCTTATATAAATGACCGGAGGCTGTATGTGATAATAATATTCTAATACATAATTAACTTTTGTTGAATTGTTTTTGTGATGAACAGTGGATATTCTGGGTTGGTCCAATGATTGGAGCTGCTGTGGCTGGAATCTACCACCAATACATTCTAAGAGGTTCAGCCATTAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA

Protein sequence

>MS.gene050133.t1

MAKDVEVQEQGEYSAKDYQDPPPAPLIDVEELTKWSFYRALIAEFVATLLFLYVTVLTIIGYSHQSDPKAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVFYMAAQCAGAICGTGLAKGFQKAYFDRYGGGANFIHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVIYNDGKIWDDQWIFWVGPMIGAAVAGIYHQYILRGSAIKALGSFRSNA