Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89095.t1 | XP_024632990.1 | 97.9 | 901 | 19 | 0 | 1 | 901 | 1 | 901 | 0.00E+00 | 1694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89095.t1 | Q8VZM1 | 74.7 | 901 | 222 | 3 | 1 | 901 | 1 | 895 | 0.0e+00 | 1284.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89095.t1 | A0A396JN32 | 97.9 | 901 | 19 | 0 | 1 | 901 | 1 | 901 | 0.0e+00 | 1694.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051102 | MS.gene89095 | 0.802293 | 6.01E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene89095 | 0.803915 | 2.78E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene89095 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene89095 | 0.83768 | 4.51E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene89095 | 0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene89095 | 0.808454 | 3.07E-50 | -1.69E-46 |
| MS.gene057869 | MS.gene89095 | 0.846848 | 1.68E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene89095 | 0.813183 | 2.91E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene89095 | 0.814113 | 1.82E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene89095 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene89095 | 0.817947 | 2.53E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89095.t1 | MTR_2g102435 | 98.238 | 908 | 9 | 1 | 1 | 901 | 1 | 908 | 0.0 | 1846 |
| MS.gene89095.t1 | MTR_2g102435 | 98.573 | 841 | 5 | 1 | 1 | 834 | 1 | 841 | 0.0 | 1707 |
| MS.gene89095.t1 | MTR_4g011890 | 81.687 | 901 | 163 | 1 | 1 | 901 | 1 | 899 | 0.0 | 1468 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89095.t1 | AT1G80410 | 75.694 | 901 | 213 | 4 | 1 | 901 | 1 | 895 | 0.0 | 1366 |
| MS.gene89095.t1 | AT1G80410 | 75.778 | 900 | 212 | 4 | 1 | 900 | 1 | 894 | 0.0 | 1363 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGAATCCAGACAATTAT+AGG | 0.203088 | 2.4:-2628049 | MS.gene89095:intron |
| CATTCATGGATCCCACTTTA+TGG | 0.203341 | 2.4:+2621407 | None:intergenic |
| ATTGCAGTTCATAAACTTCT+TGG | 0.221702 | 2.4:-2620229 | MS.gene89095:CDS |
| CCTATAATTGTCTGGATTCA+TGG | 0.238309 | 2.4:+2628049 | None:intergenic |
| CCTTATTGTCCAGGTGGTTT+TGG | 0.254259 | 2.4:-2624413 | MS.gene89095:intron |
| TTTGAAGAGATTGGCCTCTT+TGG | 0.254697 | 2.4:+2631842 | None:intergenic |
| TTTGTATTGTTTGGTTTCAT+AGG | 0.271126 | 2.4:+2630888 | None:intergenic |
| TGAAACCAAACAATACAAAA+AGG | 0.271737 | 2.4:-2630884 | MS.gene89095:CDS |
| ATATGCAAGACCACCGTAAA+TGG | 0.288770 | 2.4:-2619660 | MS.gene89095:CDS |
| TTTGTGGACTTTGTTCTTGT+TGG | 0.301744 | 2.4:-2625760 | MS.gene89095:CDS |
| CATGTTTGCTGGCATGTTTA+TGG | 0.306259 | 2.4:-2630295 | MS.gene89095:CDS |
| TTGATGCATAGAGCTGCTTT+TGG | 0.307269 | 2.4:-2621014 | MS.gene89095:CDS |
| GCTCAAATGCGAGATTTATC+TGG | 0.312933 | 2.4:-2629511 | MS.gene89095:CDS |
| TTTAAAGCAATTACTAAGAT+TGG | 0.316884 | 2.4:-2621659 | MS.gene89095:CDS |
| GACAGCCTCAGCTCTTCTAT+TGG | 0.317316 | 2.4:+2620968 | None:intergenic |
| TTGAAGAGATTGGCCTCTTT+GGG | 0.323622 | 2.4:+2631843 | None:intergenic |
| ACCAAACAACGATGAGAATC+AGG | 0.328847 | 2.4:+2621625 | None:intergenic |
| GTTGGGTTATATTCAGAAAA+TGG | 0.332435 | 2.4:-2627617 | MS.gene89095:CDS |
| TGTTCAGGTCTCTTTGTTAG+AGG | 0.332845 | 2.4:-2628315 | MS.gene89095:intron |
| TTGAGTTAGAGAATTCTATT+AGG | 0.334284 | 2.4:-2626766 | MS.gene89095:CDS |
| AACAATGAGTTTGAAGAGAT+TGG | 0.335974 | 2.4:+2631833 | None:intergenic |
| TGATTGCTTCCCTGTATTCT+CGG | 0.336107 | 2.4:+2630254 | None:intergenic |
| ACGTGATCTATCTCTCTTAC+AGG | 0.341032 | 2.4:-2630182 | MS.gene89095:intron |
| TACTTCCGCCAAGGGGATCT+TGG | 0.344936 | 2.4:-2624198 | MS.gene89095:CDS |
| GAAGAATTCACCTGATTCAT+TGG | 0.350252 | 2.4:-2622002 | MS.gene89095:CDS |
| ACAGCCTCAGCTCTTCTATT+GGG | 0.350871 | 2.4:+2620969 | None:intergenic |
| AAGCAGCTGCTGGAGCTATC+AGG | 0.351044 | 2.4:-2624014 | MS.gene89095:intron |
| CCCTGATTCTCATCGTTGTT+TGG | 0.355385 | 2.4:-2621626 | MS.gene89095:intron |
| AAGCAGCAGATAGTTATATT+AGG | 0.355736 | 2.4:-2627092 | MS.gene89095:CDS |
| ACTGAAGCATGCTGGTGATT+TGG | 0.360920 | 2.4:-2624636 | MS.gene89095:CDS |
| ACGCATGCTGCAGGCTGATC+AGG | 0.362641 | 2.4:-2624537 | MS.gene89095:intron |
| AAGCTGAGCGTCAAACTATA+AGG | 0.364374 | 2.4:-2621342 | MS.gene89095:intron |
| GTCAGTCACAGGAGCATTCA+TGG | 0.366173 | 2.4:+2621393 | None:intergenic |
| ACCTTAAGAGTCATGTTTGC+TGG | 0.373822 | 2.4:-2630306 | MS.gene89095:CDS |
| CCCCGAGGATCTGGATCAAC+AGG | 0.377169 | 2.4:+2622844 | None:intergenic |
| TAGAAAGTGCGATTTCATAT+TGG | 0.378054 | 2.4:+2625623 | None:intergenic |
| TCCTCCTCAGCTGTTGACTT+TGG | 0.383700 | 2.4:+2623095 | None:intergenic |
| GATTTGTACATACCTTAGTT+AGG | 0.386456 | 2.4:+2627064 | None:intergenic |
| AGTCTTTAAGTGTCCATTCC+CGG | 0.389184 | 2.4:+2620254 | None:intergenic |
| GACTTTGTTCTTGTTGGCTC+AGG | 0.397278 | 2.4:-2625754 | MS.gene89095:intron |
| ATCGGTCCGACCGAGAATAC+AGG | 0.398414 | 2.4:-2630264 | MS.gene89095:CDS |
| ATCGAAAGCTATTGAAATTC+TGG | 0.398827 | 2.4:-2628755 | MS.gene89095:CDS |
| AAATTTCACCTATAATTGTC+TGG | 0.400605 | 2.4:+2628041 | None:intergenic |
| TATAGAAACTTTATCGATGA+AGG | 0.409029 | 2.4:-2630486 | MS.gene89095:intron |
| AGTCAAATCATCGCATGAAC+TGG | 0.409600 | 2.4:-2629453 | MS.gene89095:CDS |
| ACCTGTTGATCCAGATCCTC+GGG | 0.411505 | 2.4:-2622845 | MS.gene89095:CDS |
| TCTAAAAGCAATGGCGCGCT+TGG | 0.412286 | 2.4:-2620283 | MS.gene89095:intron |
| ATGGCTAGAACTACCATTTA+CGG | 0.413854 | 2.4:+2619647 | None:intergenic |
| TAAGCGGTCATCTGCTGTTA+AGG | 0.415951 | 2.4:-2627531 | MS.gene89095:intron |
| ATGGCGCGCTTGGACCAATC+CGG | 0.416357 | 2.4:-2620273 | MS.gene89095:CDS |
| TCACCTTGAAGAAAATCTAA+TGG | 0.423111 | 2.4:+2627126 | None:intergenic |
| GCTAGTGGGATATCAAAGTC+TGG | 0.423291 | 2.4:-2622883 | MS.gene89095:CDS |
| AGTATGAATGAAAATCAAAT+TGG | 0.433591 | 2.4:+2624118 | None:intergenic |
| GATTAAATTCTTCCATAAAG+TGG | 0.441252 | 2.4:-2621419 | MS.gene89095:CDS |
| ACTTCCGCCAAGGGGATCTT+GGG | 0.444899 | 2.4:-2624197 | MS.gene89095:CDS |
| AAGTGTGTCTCCAATGAATC+AGG | 0.448584 | 2.4:+2621992 | None:intergenic |
| TCTAATCGATCTATTTCATC+AGG | 0.452007 | 2.4:+2627584 | None:intergenic |
| TTAAGTGTCCATTCCCGGAT+TGG | 0.455748 | 2.4:+2620259 | None:intergenic |
| TCCTCAGCTGTTGACTTTGG+AGG | 0.456717 | 2.4:+2623098 | None:intergenic |
| CGTAAGATTTCAATATTGTC+AGG | 0.457212 | 2.4:+2630202 | None:intergenic |
| TAAATCTGAAGCATATGAAC+TGG | 0.458052 | 2.4:-2630438 | MS.gene89095:CDS |
| CCCGTACTCCACATACTTTG+AGG | 0.459572 | 2.4:-2619724 | MS.gene89095:CDS |
| ATGTTTATGGTCTTCTCTAT+CGG | 0.460906 | 2.4:-2630282 | MS.gene89095:CDS |
| TGCTTCCCTGTATTCTCGGT+CGG | 0.462655 | 2.4:+2630258 | None:intergenic |
| CCGTACTCCACATACTTTGA+GGG | 0.467306 | 2.4:-2619723 | MS.gene89095:CDS |
| TGCAGATGAAGCTAGGTGTA+TGG | 0.469186 | 2.4:-2624597 | MS.gene89095:CDS |
| GTAATTAAACTAACCTTCCC+AGG | 0.469208 | 2.4:+2626922 | None:intergenic |
| AAGGCCTTCAACGATGTGTT+GGG | 0.474165 | 2.4:-2627634 | MS.gene89095:CDS |
| AAAAGCGTACCTCCATGATC+TGG | 0.474294 | 2.4:+2630826 | None:intergenic |
| GGCAACATACCTTCAATCCT+TGG | 0.475403 | 2.4:+2630411 | None:intergenic |
| GGGTTTGACATTAAATTGCA+TGG | 0.476059 | 2.4:-2630465 | MS.gene89095:CDS |
| AATCATCGCATGAACTGGAT+TGG | 0.481801 | 2.4:-2629448 | MS.gene89095:CDS |
| CAACGTTATCACCCGGTGAA+TGG | 0.484949 | 2.4:+2619628 | None:intergenic |
| CTGTAAGCAGTCAGCTGCAC+GGG | 0.486688 | 2.4:-2621184 | MS.gene89095:intron |
| GTGGAATCTGCCACATCAAA+CGG | 0.487761 | 2.4:-2619606 | MS.gene89095:CDS |
| CCCTCAAAGTATGTGGAGTA+CGG | 0.488830 | 2.4:+2619723 | None:intergenic |
| CGCTTGGACCAATCCGGGAA+TGG | 0.493217 | 2.4:-2620267 | MS.gene89095:CDS |
| GCCAGCAAACATGACTCTTA+AGG | 0.493533 | 2.4:+2630305 | None:intergenic |
| CTGCATTTGCAGATGAAGCT+AGG | 0.497985 | 2.4:-2624604 | MS.gene89095:CDS |
| AATGACATTGCGTACATATG+TGG | 0.500998 | 2.4:-2624085 | MS.gene89095:CDS |
| GAAATTCTGGAAGCATATGA+AGG | 0.501912 | 2.4:-2628742 | MS.gene89095:CDS |
| AACCTGTTGATCCAGATCCT+CGG | 0.503841 | 2.4:-2622846 | MS.gene89095:CDS |
| GAAGGCCTTCAACGATGTGT+TGG | 0.504909 | 2.4:-2627635 | MS.gene89095:CDS |
| TATTAGGCCTCTCCTAACTA+AGG | 0.506385 | 2.4:-2627076 | MS.gene89095:intron |
| GAGGCTGTCAAGTTGATTGA+AGG | 0.508013 | 2.4:-2620954 | MS.gene89095:CDS |
| CTGTGTGAAACGCATGCTGC+AGG | 0.509300 | 2.4:-2624546 | MS.gene89095:CDS |
| ATAACCCAACACATCGTTGA+AGG | 0.509961 | 2.4:+2627630 | None:intergenic |
| TTTCTGAGCAGGAGGCAACT+TGG | 0.512661 | 2.4:+2623061 | None:intergenic |
| ATTAAATTCTTCCATAAAGT+GGG | 0.514002 | 2.4:-2621418 | MS.gene89095:CDS |
| GAGAATTCTATTAGGACGAC+CGG | 0.515037 | 2.4:-2626758 | MS.gene89095:CDS |
| TATTGGTGCAGCATTATGAC+AGG | 0.515257 | 2.4:-2625651 | MS.gene89095:intron |
| TGGCGCGCTTGGACCAATCC+GGG | 0.515296 | 2.4:-2620272 | MS.gene89095:CDS |
| TCTTGAGGAGTTGCAGAAGA+AGG | 0.518804 | 2.4:-2628270 | MS.gene89095:CDS |
| ACTGGTTCGCCAAGGATTGA+AGG | 0.521602 | 2.4:-2630420 | MS.gene89095:intron |
| TTGTGTATATCTTACCTCCC+AGG | 0.522407 | 2.4:+2626728 | None:intergenic |
| GCCGTGCTATTCACAAAAGA+CGG | 0.528019 | 2.4:-2624379 | MS.gene89095:CDS |
| AGAGTTCAAATGATGTGAAA+CGG | 0.533746 | 2.4:+2629420 | None:intergenic |
| CTGACAGTGAGAAACTCGTT+TGG | 0.534164 | 2.4:-2621375 | MS.gene89095:CDS |
| CCGTGCTATTCACAAAAGAC+GGG | 0.534821 | 2.4:-2624378 | MS.gene89095:CDS |
| GAAAGATCTGAGAATAGAGA+TGG | 0.540795 | 2.4:+2626961 | None:intergenic |
| TGGTAGTTCTAGCCATTCAC+CGG | 0.540956 | 2.4:-2619640 | MS.gene89095:CDS |
| ATGCAGCATCTTGATCATCA+AGG | 0.544689 | 2.4:+2620200 | None:intergenic |
| CCTCAAAGTATGTGGAGTAC+GGG | 0.547267 | 2.4:+2619724 | None:intergenic |
| AGGACGACCGGTCAATACCC+TGG | 0.549573 | 2.4:-2626746 | MS.gene89095:CDS |
| TCCAAAGTCAACAGCTGAGG+AGG | 0.549595 | 2.4:-2623096 | MS.gene89095:CDS |
| AAGCTTGGTCGCTTAGAAGA+AGG | 0.551258 | 2.4:-2628098 | MS.gene89095:CDS |
| ATAGAAACTTTATCGATGAA+GGG | 0.552129 | 2.4:-2630485 | MS.gene89095:intron |
| GATACCCTGTACAAAACACT+TGG | 0.553474 | 2.4:-2627563 | MS.gene89095:CDS |
| ATAGGTTGAAGATCCATTGT+TGG | 0.554394 | 2.4:-2622053 | MS.gene89095:intron |
| CTTCTTTATACAATCACCCT+GGG | 0.554688 | 2.4:-2626939 | MS.gene89095:CDS |
| GTCTCTTTGTTAGAGGAATG+TGG | 0.555782 | 2.4:-2628308 | MS.gene89095:CDS |
| TGTGTATATCTTACCTCCCA+GGG | 0.556962 | 2.4:+2626729 | None:intergenic |
| TTTATACAATCACCCTGGGA+AGG | 0.557847 | 2.4:-2626935 | MS.gene89095:intron |
| AATGAAGAATCAAGTGCTAG+TGG | 0.558556 | 2.4:-2622898 | MS.gene89095:CDS |
| TCGGTCCGACCGAGAATACA+GGG | 0.558689 | 2.4:-2630263 | MS.gene89095:CDS |
| ACCACATGCACTGCATGTCA+TGG | 0.560741 | 2.4:+2624338 | None:intergenic |
| TTGACTACCCTCAAAGTATG+TGG | 0.562300 | 2.4:+2619716 | None:intergenic |
| TCTTCTTTATACAATCACCC+TGG | 0.564622 | 2.4:-2626940 | MS.gene89095:CDS |
| GTTTCACTAATAGTCAAGCT+TGG | 0.567959 | 2.4:-2628113 | MS.gene89095:CDS |
| AGAAGGCGAGAAATTGTACC+AGG | 0.569067 | 2.4:-2628081 | MS.gene89095:CDS |
| AGTTTCTCACTGTCAGTCAC+AGG | 0.569951 | 2.4:+2621382 | None:intergenic |
| TATCTGGCTTTGTTGAGACT+CGG | 0.575446 | 2.4:-2629495 | MS.gene89095:CDS |
| CTGAAAGCTACTTCCGCCAA+GGG | 0.579891 | 2.4:-2624206 | MS.gene89095:CDS |
| TAAGAACATTACCTTGACAC+AGG | 0.582424 | 2.4:+2620918 | None:intergenic |
| GGACGACCGGTCAATACCCT+GGG | 0.584275 | 2.4:-2626745 | MS.gene89095:CDS |
| GTACATACCTTAGTTAGGAG+AGG | 0.585549 | 2.4:+2627069 | None:intergenic |
| GAAGCTAGGTGTATGGATCT+CGG | 0.586254 | 2.4:-2624590 | MS.gene89095:CDS |
| CGCACTTTCTAAAATCAATG+AGG | 0.587661 | 2.4:-2625611 | MS.gene89095:CDS |
| TTGATGCTCAGATATTATGA+AGG | 0.590942 | 2.4:-2627653 | MS.gene89095:intron |
| TGCTTCTCTTCCTCCCAAAG+AGG | 0.591397 | 2.4:-2631856 | MS.gene89095:CDS |
| AGTGCTATCGAAATGCACTA+AGG | 0.592014 | 2.4:-2630231 | MS.gene89095:CDS |
| CATTGATCTATACTCTGCCA+AGG | 0.592355 | 2.4:-2625566 | MS.gene89095:intron |
| CTAGTGGGATATCAAAGTCT+GGG | 0.592509 | 2.4:-2622882 | MS.gene89095:CDS |
| AGTCGGATACTGAAGCATGC+TGG | 0.596408 | 2.4:-2624644 | MS.gene89095:CDS |
| GAAAATGAACGGATTGAGCA+TGG | 0.597771 | 2.4:-2628694 | MS.gene89095:CDS |
| GATTCATGGAAAGCAATGCC+TGG | 0.598332 | 2.4:+2628063 | None:intergenic |
| GCTTGGATATAAAGAACAAG+AGG | 0.601096 | 2.4:-2628135 | MS.gene89095:CDS |
| ACAGCCCAAGATCCCCTTGG+CGG | 0.605056 | 2.4:+2624193 | None:intergenic |
| GCTGAAAGCTACTTCCGCCA+AGG | 0.605952 | 2.4:-2624207 | MS.gene89095:CDS |
| GAGTATAGATCAATGACAGT+AGG | 0.608324 | 2.4:+2625574 | None:intergenic |
| ATGAAGAATCAAGTGCTAGT+GGG | 0.610647 | 2.4:-2622897 | MS.gene89095:CDS |
| TTAACAGATTAATACCTGGA+AGG | 0.610922 | 2.4:+2621925 | None:intergenic |
| TTACCTCCCAGGGTATTGAC+CGG | 0.611377 | 2.4:+2626739 | None:intergenic |
| ATTATCCTCCAGAAAATGAA+CGG | 0.612529 | 2.4:-2628705 | MS.gene89095:CDS |
| TCCTCCAAAGTCAACAGCTG+AGG | 0.613649 | 2.4:-2623099 | MS.gene89095:CDS |
| TCTGTAAGCAGTCAGCTGCA+CGG | 0.615237 | 2.4:-2621185 | MS.gene89095:intron |
| AAGAGATTGGCCTCTTTGGG+AGG | 0.615281 | 2.4:+2631846 | None:intergenic |
| GCGGAAGTAGCTTTCAGCAG+AGG | 0.615510 | 2.4:+2624212 | None:intergenic |
| CAACAAATAACCCTGTGTCA+AGG | 0.618378 | 2.4:-2620929 | MS.gene89095:intron |
| TGCTAGTTTGCCGTTTGATG+TGG | 0.618979 | 2.4:+2619596 | None:intergenic |
| ATTGAGAGCAGAGTTGGGCG+AGG | 0.623382 | 2.4:+2619686 | None:intergenic |
| GAGACAGCCCAAGATCCCCT+TGG | 0.625283 | 2.4:+2624190 | None:intergenic |
| AAATTCTGGAAGCATATGAA+GGG | 0.625919 | 2.4:-2628741 | MS.gene89095:CDS |
| GCATATGAACTGGTTCGCCA+AGG | 0.627386 | 2.4:-2630428 | MS.gene89095:CDS |
| AGATCCCAATAGAAGAGCTG+AGG | 0.627427 | 2.4:-2620973 | MS.gene89095:CDS |
| CCAAACAACGATGAGAATCA+GGG | 0.630162 | 2.4:+2621626 | None:intergenic |
| GTGCAGCATTATGACAGGCG+CGG | 0.630371 | 2.4:-2625646 | MS.gene89095:intron |
| TAATTAAACTAACCTTCCCA+GGG | 0.634244 | 2.4:+2626923 | None:intergenic |
| GCACGGGAAATCTCTTCTTG+AGG | 0.643619 | 2.4:-2621168 | MS.gene89095:CDS |
| CACTTGGGCAGCAATTTAAG+CGG | 0.644541 | 2.4:-2627547 | MS.gene89095:CDS |
| GGTAGTTCTAGCCATTCACC+GGG | 0.665168 | 2.4:-2619639 | MS.gene89095:CDS |
| AAGAACATTACCTTGACACA+GGG | 0.665893 | 2.4:+2620919 | None:intergenic |
| GATTCCACAACGTTATCACC+CGG | 0.667897 | 2.4:+2619621 | None:intergenic |
| TCCATGACATGCAGTGCATG+TGG | 0.669899 | 2.4:-2624339 | MS.gene89095:intron |
| TTCACCGGGTGATAACGTTG+TGG | 0.670577 | 2.4:-2619625 | MS.gene89095:CDS |
| CGTGCTATTCACAAAAGACG+GGG | 0.674671 | 2.4:-2624377 | MS.gene89095:CDS |
| CTGTTGATCCAGATCCTCGG+GGG | 0.682883 | 2.4:-2622843 | MS.gene89095:CDS |
| ATACCCTGTACAAAACACTT+GGG | 0.694875 | 2.4:-2627562 | MS.gene89095:CDS |
| CGACCGGTCAATACCCTGGG+AGG | 0.697296 | 2.4:-2626742 | MS.gene89095:intron |
| TGTTGATCCAGATCCTCGGG+GGG | 0.715221 | 2.4:-2622842 | MS.gene89095:CDS |
| GCTAGAACTACCATTTACGG+TGG | 0.715343 | 2.4:+2619650 | None:intergenic |
| TGAAAGCTACTTCCGCCAAG+GGG | 0.721495 | 2.4:-2624205 | MS.gene89095:CDS |
| ACATGCACTGCATGTCATGG+AGG | 0.744439 | 2.4:+2624341 | None:intergenic |
| CCTGTTGATCCAGATCCTCG+GGG | 0.759458 | 2.4:-2622844 | MS.gene89095:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2619572 | 2631883 | 2619572 | ID=MS.gene89095 |
| chr2.4 | mRNA | 2619572 | 2631883 | 2619572 | ID=MS.gene89095.t1;Parent=MS.gene89095 |
| chr2.4 | exon | 2631833 | 2631883 | 2631833 | ID=MS.gene89095.t1.exon1;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2631833 | 2631883 | 2631833 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2630836 | 2630914 | 2630836 | ID=MS.gene89095.t1.exon2;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2630836 | 2630914 | 2630836 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2630421 | 2630503 | 2630421 | ID=MS.gene89095.t1.exon3;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2630421 | 2630503 | 2630421 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2630183 | 2630332 | 2630183 | ID=MS.gene89095.t1.exon4;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2630183 | 2630332 | 2630183 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2629418 | 2629533 | 2629418 | ID=MS.gene89095.t1.exon5;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2629418 | 2629533 | 2629418 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2628675 | 2628780 | 2628675 | ID=MS.gene89095.t1.exon6;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2628675 | 2628780 | 2628675 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2628259 | 2628330 | 2628259 | ID=MS.gene89095.t1.exon7;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2628259 | 2628330 | 2628259 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2628050 | 2628165 | 2628050 | ID=MS.gene89095.t1.exon8;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2628050 | 2628165 | 2628050 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2627532 | 2627664 | 2627532 | ID=MS.gene89095.t1.exon9;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2627532 | 2627664 | 2627532 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2627077 | 2627154 | 2627077 | ID=MS.gene89095.t1.exon10;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2627077 | 2627154 | 2627077 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2626936 | 2626989 | 2626936 | ID=MS.gene89095.t1.exon11;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2626936 | 2626989 | 2626936 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2626743 | 2626813 | 2626743 | ID=MS.gene89095.t1.exon12;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2626743 | 2626813 | 2626743 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2625755 | 2625809 | 2625755 | ID=MS.gene89095.t1.exon13;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2625755 | 2625809 | 2625755 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2625567 | 2625662 | 2625567 | ID=MS.gene89095.t1.exon14;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2625567 | 2625662 | 2625567 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2624538 | 2624666 | 2624538 | ID=MS.gene89095.t1.exon15;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2624538 | 2624666 | 2624538 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2624340 | 2624422 | 2624340 | ID=MS.gene89095.t1.exon16;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2624340 | 2624422 | 2624340 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2624015 | 2624245 | 2624015 | ID=MS.gene89095.t1.exon17;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2624015 | 2624245 | 2624015 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2623013 | 2623145 | 2623013 | ID=MS.gene89095.t1.exon18;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2623013 | 2623145 | 2623013 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2622828 | 2622935 | 2622828 | ID=MS.gene89095.t1.exon19;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2622828 | 2622935 | 2622828 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2621940 | 2622071 | 2621940 | ID=MS.gene89095.t1.exon20;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2621940 | 2622071 | 2621940 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2621627 | 2621683 | 2621627 | ID=MS.gene89095.t1.exon21;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2621627 | 2621683 | 2621627 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2621343 | 2621440 | 2621343 | ID=MS.gene89095.t1.exon22;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2621343 | 2621440 | 2621343 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2621138 | 2621196 | 2621138 | ID=MS.gene89095.t1.exon23;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2621138 | 2621196 | 2621138 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2620930 | 2621041 | 2620930 | ID=MS.gene89095.t1.exon24;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2620930 | 2621041 | 2620930 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2620197 | 2620297 | 2620197 | ID=MS.gene89095.t1.exon25;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2620197 | 2620297 | 2620197 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| chr2.4 | exon | 2619572 | 2619774 | 2619572 | ID=MS.gene89095.t1.exon26;Parent=MS.gene89095.t1 |
| chr2.4 | CDS | 2619572 | 2619774 | 2619572 | ID=cds.MS.gene89095.t1;Parent=MS.gene89095.t1 |
| Gene Sequence |
| Protein sequence |
