Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89335.t1 | XP_013448940.1 | 94.3 | 439 | 25 | 0 | 1 | 439 | 72 | 510 | 5.10E-255 | 889.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89335.t1 | A0A072U016 | 94.3 | 439 | 25 | 0 | 1 | 439 | 72 | 510 | 3.7e-255 | 889.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05240 | MS.gene89335 | 0.809988 | 1.44E-50 | -1.69E-46 |
| MS.gene054277 | MS.gene89335 | 0.832102 | 1.15E-55 | -1.69E-46 |
| MS.gene054742 | MS.gene89335 | 0.847579 | 1.06E-59 | -1.69E-46 |
| MS.gene055215 | MS.gene89335 | 0.98781 | 1.27E-171 | -1.69E-46 |
| MS.gene056330 | MS.gene89335 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene89335 | 0.854058 | 1.59E-61 | -1.69E-46 |
| MS.gene056924 | MS.gene89335 | 0.808584 | 2.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89335.t1 | MTR_7g063090 | 94.305 | 439 | 25 | 0 | 1 | 439 | 72 | 510 | 0.0 | 879 |
| MS.gene89335.t1 | MTR_3g068125 | 56.429 | 420 | 169 | 6 | 20 | 437 | 81 | 488 | 1.41e-173 | 495 |
| MS.gene89335.t1 | MTR_8g028765 | 47.955 | 440 | 213 | 6 | 3 | 436 | 58 | 487 | 1.02e-138 | 406 |
| MS.gene89335.t1 | MTR_4g061590 | 44.725 | 436 | 216 | 4 | 10 | 434 | 96 | 517 | 3.43e-132 | 391 |
| MS.gene89335.t1 | MTR_5g010070 | 47.608 | 418 | 193 | 6 | 21 | 427 | 82 | 484 | 1.67e-131 | 388 |
| MS.gene89335.t1 | MTR_8g098835 | 45.084 | 417 | 203 | 5 | 10 | 414 | 94 | 496 | 6.20e-131 | 387 |
| MS.gene89335.t1 | MTR_2g095970 | 46.377 | 414 | 197 | 4 | 10 | 412 | 121 | 520 | 9.92e-131 | 388 |
| MS.gene89335.t1 | MTR_7g078320 | 48.259 | 402 | 202 | 3 | 12 | 411 | 68 | 465 | 3.04e-129 | 382 |
| MS.gene89335.t1 | MTR_4g046680 | 42.206 | 417 | 227 | 7 | 21 | 437 | 74 | 476 | 2.21e-118 | 354 |
| MS.gene89335.t1 | MTR_4g046677 | 44.928 | 414 | 215 | 7 | 21 | 430 | 63 | 467 | 1.11e-115 | 347 |
| MS.gene89335.t1 | MTR_5g008060 | 41.500 | 400 | 229 | 4 | 14 | 410 | 118 | 515 | 1.11e-106 | 326 |
| MS.gene89335.t1 | MTR_2g088940 | 42.243 | 419 | 224 | 7 | 19 | 430 | 55 | 462 | 9.78e-105 | 319 |
| MS.gene89335.t1 | MTR_2g088940 | 42.005 | 419 | 227 | 7 | 19 | 430 | 55 | 464 | 1.32e-104 | 318 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89335.t1 | AT2G37730 | 65.176 | 425 | 146 | 2 | 16 | 439 | 91 | 514 | 0.0 | 606 |
| MS.gene89335.t1 | AT3G11420 | 52.535 | 434 | 195 | 7 | 8 | 436 | 78 | 505 | 6.78e-153 | 443 |
| MS.gene89335.t1 | AT5G41460 | 50.000 | 398 | 185 | 8 | 21 | 411 | 110 | 500 | 3.12e-132 | 391 |
| MS.gene89335.t1 | AT4G23490 | 46.353 | 425 | 201 | 6 | 17 | 427 | 105 | 516 | 4.04e-132 | 391 |
| MS.gene89335.t1 | AT4G11350 | 46.444 | 450 | 203 | 11 | 1 | 427 | 63 | 497 | 1.45e-131 | 389 |
| MS.gene89335.t1 | AT1G01570 | 46.715 | 411 | 205 | 8 | 14 | 412 | 44 | 452 | 1.24e-123 | 368 |
| MS.gene89335.t1 | AT1G01570 | 46.715 | 411 | 205 | 8 | 14 | 412 | 75 | 483 | 4.97e-123 | 367 |
| MS.gene89335.t1 | AT4G15240 | 44.499 | 409 | 214 | 5 | 21 | 426 | 78 | 476 | 1.95e-117 | 352 |
| MS.gene89335.t1 | AT1G07850 | 47.475 | 396 | 198 | 6 | 21 | 412 | 123 | 512 | 6.29e-115 | 347 |
| MS.gene89335.t1 | AT4G00295 | 49.025 | 359 | 169 | 5 | 4 | 348 | 55 | 413 | 1.45e-112 | 339 |
| MS.gene89335.t1 | AT1G05280 | 40.047 | 427 | 240 | 8 | 20 | 436 | 67 | 487 | 7.55e-107 | 325 |
| MS.gene89335.t1 | AT1G33250 | 41.476 | 393 | 223 | 5 | 22 | 410 | 130 | 519 | 1.50e-105 | 323 |
| MS.gene89335.t1 | AT5G12460 | 40.189 | 423 | 236 | 8 | 18 | 437 | 33 | 441 | 9.58e-103 | 313 |
| MS.gene89335.t1 | AT1G05280 | 43.662 | 355 | 190 | 5 | 20 | 365 | 67 | 420 | 1.30e-101 | 311 |
| MS.gene89335.t1 | AT4G11350 | 53.017 | 232 | 97 | 6 | 1 | 221 | 63 | 293 | 1.92e-74 | 236 |
Find 100 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGCAGCATTGTCTTCT+TGG | 0.142429 | 7.3:-42175756 | None:intergenic |
| CGTTCCATGTTTGGGAAAAT+TGG | 0.160263 | 7.3:-42174572 | None:intergenic |
| CAAAGTTGCATTAGTGAAAT+TGG | 0.179177 | 7.3:+42173678 | MS.gene89335:CDS |
| CTCTTTAGCTGTTGGTAAAT+AGG | 0.227432 | 7.3:-42174729 | None:intergenic |
| GATCGTTATTCTGAGTATTA+TGG | 0.235245 | 7.3:+42173639 | MS.gene89335:CDS |
| GGTCGGGTATTAAAAGTAAA+TGG | 0.275509 | 7.3:-42174803 | None:intergenic |
| GGCGGAGCTTGTGAAGATTT+TGG | 0.288835 | 7.3:+42173605 | MS.gene89335:CDS |
| CTTCGGCAGATTCTATGATT+AGG | 0.294698 | 7.3:-42173101 | None:intergenic |
| GTGTGACAAGGTTGATTATA+AGG | 0.297026 | 7.3:+42174943 | MS.gene89335:CDS |
| CTGATGAAAACCAGGTTCTT+TGG | 0.305345 | 7.3:-42173712 | None:intergenic |
| AAAAGATATGATGATGGTTC+AGG | 0.309105 | 7.3:+42174914 | MS.gene89335:CDS |
| TCTTTAGCTGTTGGTAAATA+GGG | 0.316576 | 7.3:-42174728 | None:intergenic |
| GCATCAACACGTTCCATGTT+TGG | 0.317875 | 7.3:-42174581 | None:intergenic |
| ATGGATCGGATTGAGGGTTT+TGG | 0.334021 | 7.3:+42174866 | MS.gene89335:CDS |
| TTCGGCAGATTCTATGATTA+GGG | 0.357382 | 7.3:-42173100 | None:intergenic |
| CATAATCAAATGTACTATAT+TGG | 0.358117 | 7.3:+42173492 | MS.gene89335:CDS |
| GTGTTGGCAGAGACTTTATA+TGG | 0.362541 | 7.3:-42173297 | None:intergenic |
| AAACAAAATGTGAGAGATAT+TGG | 0.369336 | 7.3:-42173136 | None:intergenic |
| CATCAACACGTTCCATGTTT+GGG | 0.372831 | 7.3:-42174580 | None:intergenic |
| AACACCGTAACGAGGTTGTC+GGG | 0.384605 | 7.3:-42173456 | None:intergenic |
| GATATACGTGGTAACCCTTA+TGG | 0.391314 | 7.3:+42174488 | MS.gene89335:CDS |
| ATTGGTCAATATCAATATCA+TGG | 0.414518 | 7.3:+42174684 | MS.gene89335:CDS |
| AGAGATATTGGTCGGCTCTT+CGG | 0.417149 | 7.3:-42173124 | None:intergenic |
| TCAAGATCCGTGTGTGAAAC+CGG | 0.425631 | 7.3:+42174832 | MS.gene89335:CDS |
| GTCGGGTATTAAAAGTAAAT+GGG | 0.428065 | 7.3:-42174802 | None:intergenic |
| GTTTGCTATAAGCTACCCTT+TGG | 0.435594 | 7.3:+42173581 | MS.gene89335:CDS |
| TTATATGGCGGTGACGTCTC+TGG | 0.439119 | 7.3:-42173282 | None:intergenic |
| ACCATGGCTTATGGCGGCGG+AGG | 0.439626 | 7.3:+42173558 | MS.gene89335:CDS |
| CATTTAAAACGTGGAAGACT+TGG | 0.440818 | 7.3:+42174771 | MS.gene89335:CDS |
| GAGATAATCAACAATGTAGA+TGG | 0.448839 | 7.3:+42175774 | MS.gene89335:CDS |
| AATGAGACCAATGGTGCAAC+TGG | 0.459226 | 7.3:-42174527 | None:intergenic |
| ATTGGTCGGCTCTTCGGCTT+CGG | 0.461534 | 7.3:-42173118 | None:intergenic |
| TAATGTGAGGTGGTTTGTAA+TGG | 0.468209 | 7.3:+42173410 | MS.gene89335:CDS |
| AACAGCTAAAGAGCTTGAAA+TGG | 0.468515 | 7.3:+42174739 | MS.gene89335:CDS |
| GCTAGTAACATCATACAAAT+CGG | 0.470667 | 7.3:+42174613 | MS.gene89335:CDS |
| AAAGATATGATGATGGTTCA+GGG | 0.471625 | 7.3:+42174915 | MS.gene89335:CDS |
| AACATCATACAAATCGGATC+CGG | 0.473625 | 7.3:+42174619 | MS.gene89335:CDS |
| AGCACATCCAGTTGCACCAT+TGG | 0.473959 | 7.3:+42174520 | MS.gene89335:CDS |
| GGTCATAGCAAAATGATTGT+TGG | 0.474890 | 7.3:-42174652 | None:intergenic |
| TACACCATGGCTTATGGCGG+CGG | 0.480790 | 7.3:+42173555 | MS.gene89335:CDS |
| TTGGTCAATATCAATATCAT+GGG | 0.486919 | 7.3:+42174685 | MS.gene89335:CDS |
| ACACACGGATCTTGACTAAC+GGG | 0.488417 | 7.3:-42174824 | None:intergenic |
| ATTTCAAGCTCTTTAGCTGT+TGG | 0.490697 | 7.3:-42174737 | None:intergenic |
| GTCTAGCCACACGAAGCCTC+TGG | 0.494645 | 7.3:-42173232 | None:intergenic |
| GGTCGGGGATTGACCCGGTC+CGG | 0.495472 | 7.3:+42174887 | MS.gene89335:CDS |
| CTTCCCCGACAACCTCGTTA+CGG | 0.497124 | 7.3:+42173452 | MS.gene89335:CDS |
| AATGTGAGGTGGTTTGTAAT+GGG | 0.497788 | 7.3:+42173411 | MS.gene89335:CDS |
| TTTGCCTCATTATTGGAAAG+AGG | 0.503193 | 7.3:+42175009 | MS.gene89335:CDS |
| CGATCCATAAAATACACAAC+CGG | 0.503463 | 7.3:-42174851 | None:intergenic |
| GCCACCAGAGTTCGCTATAG+TGG | 0.506114 | 7.3:-42173197 | None:intergenic |
| AATCAAATGTACTATATTGG+TGG | 0.512900 | 7.3:+42173495 | MS.gene89335:CDS |
| TTTAAATACACATGTTGGTA+CGG | 0.517569 | 7.3:+42173327 | MS.gene89335:CDS |
| TGTGCTGCTAGTAAGCCATA+AGG | 0.519343 | 7.3:-42174503 | None:intergenic |
| CGGATCTTGACTAACGGGTC+GGG | 0.525035 | 7.3:-42174819 | None:intergenic |
| TGCTATAAGCTACCCTTTGG+CGG | 0.527490 | 7.3:+42173584 | MS.gene89335:CDS |
| TTCACAAGCTCCGCCGCCAA+AGG | 0.528886 | 7.3:-42173597 | None:intergenic |
| TCACAAGCTCCGCCGCCAAA+GGG | 0.532160 | 7.3:-42173596 | None:intergenic |
| GTTGATTATAAGGTGGCTCA+TGG | 0.535895 | 7.3:+42174953 | MS.gene89335:CDS |
| CACACACGGATCTTGACTAA+CGG | 0.540512 | 7.3:-42174825 | None:intergenic |
| CATACCTCTTTCCAATAATG+AGG | 0.541220 | 7.3:-42175013 | None:intergenic |
| GTGCTGCTAGTAAGCCATAA+GGG | 0.553826 | 7.3:-42174502 | None:intergenic |
| TCGGCGGCTCTTCAGCTACA+TGG | 0.555386 | 7.3:+42173163 | MS.gene89335:CDS |
| ATTACATCACTTAGACTATG+TGG | 0.555409 | 7.3:+42174547 | MS.gene89335:CDS |
| CCCTCCGCCGCCATAAGCCA+TGG | 0.563703 | 7.3:-42173559 | None:intergenic |
| ACATCATACAAATCGGATCC+GGG | 0.564580 | 7.3:+42174620 | MS.gene89335:CDS |
| TATAAGCTACCCTTTGGCGG+CGG | 0.564991 | 7.3:+42173587 | MS.gene89335:CDS |
| ACGGATCTTGACTAACGGGT+CGG | 0.569910 | 7.3:-42174820 | None:intergenic |
| GTTCAGATTACCAAAGAACC+TGG | 0.570984 | 7.3:+42173702 | MS.gene89335:CDS |
| TACACAACCGGTTTCACACA+CGG | 0.573621 | 7.3:-42174839 | None:intergenic |
| CAACACCGTAACGAGGTTGT+CGG | 0.582802 | 7.3:-42173457 | None:intergenic |
| CCATGGCTTATGGCGGCGGA+GGG | 0.583286 | 7.3:+42173559 | MS.gene89335:CDS |
| CATCGTTTAAATACACATGT+TGG | 0.586906 | 7.3:+42173322 | MS.gene89335:CDS |
| CAATAATGAGGCAAAAGCAT+AGG | 0.587166 | 7.3:-42175001 | None:intergenic |
| GGTTATAAAAGATATGATGA+TGG | 0.594197 | 7.3:+42174908 | MS.gene89335:CDS |
| GTGATCAATGTCAAAATCAG+AGG | 0.606553 | 7.3:+42175810 | MS.gene89335:CDS |
| AATTAGGGTTAGATAATGTG+AGG | 0.609265 | 7.3:+42173397 | MS.gene89335:CDS |
| ATATGATGATGGTTCAGGGA+AGG | 0.617134 | 7.3:+42174919 | MS.gene89335:CDS |
| AAATGTACCTGATGAAAACC+AGG | 0.619010 | 7.3:-42173720 | None:intergenic |
| AAAATGTGAGAGATATTGGT+CGG | 0.626298 | 7.3:-42173132 | None:intergenic |
| GAGGTTGTCGGGGAAGAAGA+CGG | 0.628561 | 7.3:-42173445 | None:intergenic |
| TTCAGGGAAGGAGTGTGACA+AGG | 0.630094 | 7.3:+42174931 | MS.gene89335:CDS |
| GTCGCCACTATAGCGAACTC+TGG | 0.630700 | 7.3:+42173193 | MS.gene89335:CDS |
| TAGGGTTAGATAATGTGAGG+TGG | 0.632426 | 7.3:+42173400 | MS.gene89335:CDS |
| GTATTTAAACGATGACGTGT+TGG | 0.635519 | 7.3:-42173313 | None:intergenic |
| CATACAAATCGGATCCGGGT+CGG | 0.636300 | 7.3:+42174624 | MS.gene89335:CDS |
| TAGCCACACGAAGCCTCTGG+TGG | 0.644538 | 7.3:-42173229 | None:intergenic |
| ACACCGTAACGAGGTTGTCG+GGG | 0.648576 | 7.3:-42173455 | None:intergenic |
| ATTTCGACAACACCGTAACG+AGG | 0.653291 | 7.3:-42173464 | None:intergenic |
| GCCACTATAGCGAACTCTGG+TGG | 0.653872 | 7.3:+42173196 | MS.gene89335:CDS |
| TTTCCCAAACATTTAAAACG+TGG | 0.662282 | 7.3:+42174762 | MS.gene89335:CDS |
| TGACAAGGTTGATTATAAGG+TGG | 0.676439 | 7.3:+42174946 | MS.gene89335:CDS |
| TGGCGTCAAAACACCACCAG+AGG | 0.678981 | 7.3:+42173216 | MS.gene89335:CDS |
| TTTGTTGTAAATTTCTAACG+AGG | 0.679187 | 7.3:-42175858 | None:intergenic |
| GATTGTTGGATAGTCCGACC+CGG | 0.683447 | 7.3:-42174638 | None:intergenic |
| ACACCACCAGAGGCTTCGTG+TGG | 0.687181 | 7.3:+42173226 | MS.gene89335:CDS |
| AAGTGATGTAATGAGACCAA+TGG | 0.694770 | 7.3:-42174536 | None:intergenic |
| TGGTCAATATCAATATCATG+GGG | 0.701871 | 7.3:+42174686 | MS.gene89335:CDS |
| TCGGGTATTAAAAGTAAATG+GGG | 0.708683 | 7.3:-42174801 | None:intergenic |
| TTGGCAGAGACTTTATATGG+CGG | 0.715228 | 7.3:-42173294 | None:intergenic |
| TTAATGCAGGTAGATATACG+TGG | 0.808611 | 7.3:+42174476 | MS.gene89335:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATTAGCTAAAA+TGG | - | chr7.3:42174450-42174469 | None:intergenic | 10.0% |
| !! | AATAAATACGTAATAATTAA+TGG | - | chr7.3:42173916-42173935 | None:intergenic | 10.0% |
| !! | ATTAACATAATAATTATATG+TGG | + | chr7.3:42175078-42175097 | MS.gene89335:intron | 10.0% |
| !! | TTAACATAATAATTATATGT+GGG | + | chr7.3:42175079-42175098 | MS.gene89335:intron | 10.0% |
| !!! | AATACTTTTTTTTTGAATAA+AGG | - | chr7.3:42174042-42174061 | None:intergenic | 10.0% |
| !!! | AGTAAATATTTTTTTTTGAA+GGG | - | chr7.3:42174070-42174089 | None:intergenic | 10.0% |
| !!! | AGTTTTTAATTTAATTAATG+CGG | + | chr7.3:42175314-42175333 | MS.gene89335:intron | 10.0% |
| !!! | ATTTTATTTTTACACATTAT+TGG | + | chr7.3:42173809-42173828 | MS.gene89335:intron | 10.0% |
| !!! | TTCTTTATTTTTATTACTAA+TGG | - | chr7.3:42175445-42175464 | None:intergenic | 10.0% |
| !!! | TTTATTTGATTTTCTTTTTT+TGG | - | chr7.3:42174226-42174245 | None:intergenic | 10.0% |
| !! | AAAATATATCATACCAATAA+AGG | - | chr7.3:42174262-42174281 | None:intergenic | 15.0% |
| !! | ATAAAGAAAAAAGAACAAAT+TGG | - | chr7.3:42175051-42175070 | None:intergenic | 15.0% |
| !! | TAAAGAAAAAAGAACAAATT+GGG | - | chr7.3:42175050-42175069 | None:intergenic | 15.0% |
| !!! | ATATTTTTTGGAATGTAAAA+TGG | - | chr7.3:42174426-42174445 | None:intergenic | 15.0% |
| !!! | ATTTATTTATTGATTAATGC+AGG | + | chr7.3:42174463-42174482 | MS.gene89335:intron | 15.0% |
| !!! | GAGTAAATATTTTTTTTTGA+AGG | - | chr7.3:42174071-42174090 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTTTTTTTTGACA+AGG | + | chr7.3:42174128-42174147 | MS.gene89335:intron | 15.0% |
| !!! | TAATTTTTGGAAAATGATAA+AGG | - | chr7.3:42175697-42175716 | None:intergenic | 15.0% |
| !! | AGATTGAAATTTGGATTAAT+AGG | + | chr7.3:42175731-42175750 | MS.gene89335:intron | 20.0% |
| !! | CATAATCAAATGTACTATAT+TGG | + | chr7.3:42173492-42173511 | MS.gene89335:CDS | 20.0% |
| !! | CTTTAATGATAAATCAGAAA+AGG | + | chr7.3:42175571-42175590 | MS.gene89335:intron | 20.0% |
| !!! | AAAAGGTAACTTTTGATTTA+TGG | + | chr7.3:42175588-42175607 | MS.gene89335:intron | 20.0% |
| !!! | ACATCATGAATCAAATTTTT+CGG | + | chr7.3:42173840-42173859 | MS.gene89335:intron | 20.0% |
| !!! | AGCTAAAATGGAATATTTTT+TGG | - | chr7.3:42174438-42174457 | None:intergenic | 20.0% |
| !!! | ATCATCATATCTTTTATAAC+CGG | - | chr7.3:42174909-42174928 | None:intergenic | 20.0% |
| !!! | CTTTTCTGATTTATCATTAA+AGG | - | chr7.3:42175573-42175592 | None:intergenic | 20.0% |
| !!! | TACACTAATTTTCTCAAATT+AGG | - | chr7.3:42175378-42175397 | None:intergenic | 20.0% |
| !!! | TAGTTGCTAATATTTCATTT+TGG | + | chr7.3:42175247-42175266 | MS.gene89335:intron | 20.0% |
| !!! | TTTAATTTAATTAATGCGGA+TGG | + | chr7.3:42175318-42175337 | MS.gene89335:intron | 20.0% |
| !!! | TTTTTCTCTTGAATATTCAT+TGG | + | chr7.3:42173770-42173789 | MS.gene89335:intron | 20.0% |
| ! | AAACAAAATGTGAGAGATAT+TGG | - | chr7.3:42173139-42173158 | None:intergenic | 25.0% |
| ! | AAATGTTAATGAGTGTTCTA+TGG | + | chr7.3:42175512-42175531 | MS.gene89335:intron | 25.0% |
| ! | AAGGATAGTAAATACTTGAA+CGG | - | chr7.3:42174023-42174042 | None:intergenic | 25.0% |
| ! | AATCAAATGTACTATATTGG+TGG | + | chr7.3:42173495-42173514 | MS.gene89335:CDS | 25.0% |
| ! | ACTAAATTATCATGTTCAAG+AGG | - | chr7.3:42175231-42175250 | None:intergenic | 25.0% |
| ! | ATCCAAATTTCAATCTAGTT+AGG | - | chr7.3:42175727-42175746 | None:intergenic | 25.0% |
| ! | ATCGATTGAATTCTCTATAA+AGG | + | chr7.3:42173876-42173895 | MS.gene89335:intron | 25.0% |
| ! | ATCGTCGAAAACTAAAAATA+AGG | - | chr7.3:42174098-42174117 | None:intergenic | 25.0% |
| ! | ATTGGTCAATATCAATATCA+TGG | + | chr7.3:42174684-42174703 | MS.gene89335:CDS | 25.0% |
| ! | GGTTATAAAAGATATGATGA+TGG | + | chr7.3:42174908-42174927 | MS.gene89335:CDS | 25.0% |
| ! | GTTGTCAAACTTACTATTTA+TGG | - | chr7.3:42175551-42175570 | None:intergenic | 25.0% |
| ! | TCAAAATAAAACTACCAGTT+TGG | + | chr7.3:42174333-42174352 | MS.gene89335:intron | 25.0% |
| ! | TCGATTGAATTCTCTATAAA+GGG | + | chr7.3:42173877-42173896 | MS.gene89335:intron | 25.0% |
| ! | TTAAAGAACAGTTCCTTTAT+TGG | + | chr7.3:42174246-42174265 | MS.gene89335:intron | 25.0% |
| ! | TTGGTCAATATCAATATCAT+GGG | + | chr7.3:42174685-42174704 | MS.gene89335:CDS | 25.0% |
| ! | TTTAAATACACATGTTGGTA+CGG | + | chr7.3:42173327-42173346 | MS.gene89335:CDS | 25.0% |
| !! | AATATCTCTCACATTTTGTT+TGG | + | chr7.3:42173138-42173157 | MS.gene89335:CDS | 25.0% |
| !! | GTTAGGCACTAATTAATTTT+TGG | - | chr7.3:42175710-42175729 | None:intergenic | 25.0% |
| !! | TCTAACTACCATTTTAGATT+CGG | + | chr7.3:42174310-42174329 | MS.gene89335:intron | 25.0% |
| !! | TTTGACAAGGATATCTTTTA+TGG | + | chr7.3:42174141-42174160 | MS.gene89335:intron | 25.0% |
| !!! | AACTTTTGATTTATGGTCTA+GGG | + | chr7.3:42175595-42175614 | MS.gene89335:intron | 25.0% |
| !!! | ATATTGACCAATTTTTTGAG+TGG | - | chr7.3:42174676-42174695 | None:intergenic | 25.0% |
| !!! | TAAACGTATGGTCTTTATTT+TGG | + | chr7.3:42175167-42175186 | MS.gene89335:intron | 25.0% |
| !!! | TAACTTTTGATTTATGGTCT+AGG | + | chr7.3:42175594-42175613 | MS.gene89335:intron | 25.0% |
| !!! | TATTTTGACCGAATCTAAAA+TGG | - | chr7.3:42174321-42174340 | None:intergenic | 25.0% |
| !!! | TGAAAGAGAGTTTTGAATTA+GGG | + | chr7.3:42173382-42173401 | MS.gene89335:CDS | 25.0% |
| AAAATGTGAGAGATATTGGT+CGG | - | chr7.3:42173135-42173154 | None:intergenic | 30.0% | |
| AATTAGGGTTAGATAATGTG+AGG | + | chr7.3:42173397-42173416 | MS.gene89335:CDS | 30.0% | |
| ATTACATCACTTAGACTATG+TGG | + | chr7.3:42174547-42174566 | MS.gene89335:CDS | 30.0% | |
| CAAAGTTGCATTAGTGAAAT+TGG | + | chr7.3:42173678-42173697 | MS.gene89335:CDS | 30.0% | |
| CATCGTTTAAATACACATGT+TGG | + | chr7.3:42173322-42173341 | MS.gene89335:CDS | 30.0% | |
| GAGATAATCAACAATGTAGA+TGG | + | chr7.3:42175774-42175793 | MS.gene89335:CDS | 30.0% | |
| GATCGTTATTCTGAGTATTA+TGG | + | chr7.3:42173639-42173658 | MS.gene89335:CDS | 30.0% | |
| GATTCAAACTCTATCATTTG+AGG | + | chr7.3:42175101-42175120 | MS.gene89335:intron | 30.0% | |
| GCTAGTAACATCATACAAAT+CGG | + | chr7.3:42174613-42174632 | MS.gene89335:CDS | 30.0% | |
| GTCGGGTATTAAAAGTAAAT+GGG | - | chr7.3:42174805-42174824 | None:intergenic | 30.0% | |
| TCGGGTATTAAAAGTAAATG+GGG | - | chr7.3:42174804-42174823 | None:intergenic | 30.0% | |
| TGCCTAACTAGATTGAAATT+TGG | + | chr7.3:42175722-42175741 | MS.gene89335:intron | 30.0% | |
| TGGTCAATATCAATATCATG+GGG | + | chr7.3:42174686-42174705 | MS.gene89335:CDS | 30.0% | |
| TTAGATCAAGTAATCCAAAC+TGG | - | chr7.3:42174350-42174369 | None:intergenic | 30.0% | |
| ! | AAAATGTTGATAAGTGTCCT+CGG | + | chr7.3:42175463-42175482 | MS.gene89335:intron | 30.0% |
| ! | GATTCTATGATTAGGGTTTT+TGG | - | chr7.3:42173096-42173115 | None:intergenic | 30.0% |
| ! | GTTTTCGACGATATCTTTTA+TGG | + | chr7.3:42174106-42174125 | MS.gene89335:intron | 30.0% |
| ! | TATTTTATGGATCGGATTGA+GGG | + | chr7.3:42174860-42174879 | MS.gene89335:CDS | 30.0% |
| ! | TCTTTAGCTGTTGGTAAATA+GGG | - | chr7.3:42174731-42174750 | None:intergenic | 30.0% |
| ! | TGTTGTACATTTTTACACCA+TGG | + | chr7.3:42173542-42173561 | MS.gene89335:CDS | 30.0% |
| ! | TTTCCCAAACATTTAAAACG+TGG | + | chr7.3:42174762-42174781 | MS.gene89335:CDS | 30.0% |
| !! | AAAAGATATGATGATGGTTC+AGG | + | chr7.3:42174914-42174933 | MS.gene89335:CDS | 30.0% |
| !! | AAAGATATGATGATGGTTCA+GGG | + | chr7.3:42174915-42174934 | MS.gene89335:CDS | 30.0% |
| !! | CTTCCACGTTTTAAATGTTT+GGG | - | chr7.3:42174768-42174787 | None:intergenic | 30.0% |
| !! | TCTCACATTTTGTTTGGAAT+CGG | + | chr7.3:42173144-42173163 | MS.gene89335:CDS | 30.0% |
| !! | TCTTCCACGTTTTAAATGTT+TGG | - | chr7.3:42174769-42174788 | None:intergenic | 30.0% |
| !!! | GTGAAAGAGAGTTTTGAATT+AGG | + | chr7.3:42173381-42173400 | MS.gene89335:CDS | 30.0% |
| AAATGTACCTGATGAAAACC+AGG | - | chr7.3:42173723-42173742 | None:intergenic | 35.0% | |
| AACAGCTAAAGAGCTTGAAA+TGG | + | chr7.3:42174739-42174758 | MS.gene89335:CDS | 35.0% | |
| AACATCATACAAATCGGATC+CGG | + | chr7.3:42174619-42174638 | MS.gene89335:CDS | 35.0% | |
| AAGTGATGTAATGAGACCAA+TGG | - | chr7.3:42174539-42174558 | None:intergenic | 35.0% | |
| ATTTCAAGCTCTTTAGCTGT+TGG | - | chr7.3:42174740-42174759 | None:intergenic | 35.0% | |
| CACTAAACACACTAAACGTA+TGG | + | chr7.3:42175155-42175174 | MS.gene89335:intron | 35.0% | |
| CATACCTCTTTCCAATAATG+AGG | - | chr7.3:42175016-42175035 | None:intergenic | 35.0% | |
| CGATCCATAAAATACACAAC+CGG | - | chr7.3:42174854-42174873 | None:intergenic | 35.0% | |
| GCTATGACCACTCAAAAAAT+TGG | + | chr7.3:42174666-42174685 | MS.gene89335:CDS | 35.0% | |
| GGTCATAGCAAAATGATTGT+TGG | - | chr7.3:42174655-42174674 | None:intergenic | 35.0% | |
| GGTCGGGTATTAAAAGTAAA+TGG | - | chr7.3:42174806-42174825 | None:intergenic | 35.0% | |
| GTATTTAAACGATGACGTGT+TGG | - | chr7.3:42173316-42173335 | None:intergenic | 35.0% | |
| GTGATCAATGTCAAAATCAG+AGG | + | chr7.3:42175810-42175829 | MS.gene89335:CDS | 35.0% | |
| TGTGTTTAGTGTCAGTTAAG+CGG | - | chr7.3:42175146-42175165 | None:intergenic | 35.0% | |
| TTAATGCAGGTAGATATACG+TGG | + | chr7.3:42174476-42174495 | MS.gene89335:intron | 35.0% | |
| TTCGGCAGATTCTATGATTA+GGG | - | chr7.3:42173103-42173122 | None:intergenic | 35.0% | |
| TTTGCCTCATTATTGGAAAG+AGG | + | chr7.3:42175009-42175028 | MS.gene89335:CDS | 35.0% | |
| ! | AATGTGAGGTGGTTTGTAAT+GGG | + | chr7.3:42173411-42173430 | MS.gene89335:CDS | 35.0% |
| ! | ATATCTTTTATAACCGGACC+GGG | - | chr7.3:42174903-42174922 | None:intergenic | 35.0% |
| ! | CAATAATGAGGCAAAAGCAT+AGG | - | chr7.3:42175004-42175023 | None:intergenic | 35.0% |
| ! | CATATCTTTTATAACCGGAC+CGG | - | chr7.3:42174904-42174923 | None:intergenic | 35.0% |
| ! | CATTTAAAACGTGGAAGACT+TGG | + | chr7.3:42174771-42174790 | MS.gene89335:CDS | 35.0% |
| ! | CATTTTTACACCATGGCTTA+TGG | + | chr7.3:42173549-42173568 | MS.gene89335:CDS | 35.0% |
| ! | CGGTTGTGTATTTTATGGAT+CGG | + | chr7.3:42174852-42174871 | MS.gene89335:CDS | 35.0% |
| ! | CTATGCTTTTGCCTCATTAT+TGG | + | chr7.3:42175002-42175021 | MS.gene89335:CDS | 35.0% |
| ! | CTCTTTAGCTGTTGGTAAAT+AGG | - | chr7.3:42174732-42174751 | None:intergenic | 35.0% |
| ! | GAAACCGGTTGTGTATTTTA+TGG | + | chr7.3:42174847-42174866 | MS.gene89335:CDS | 35.0% |
| ! | GTATTTTATGGATCGGATTG+AGG | + | chr7.3:42174859-42174878 | MS.gene89335:CDS | 35.0% |
| ! | GTGTGACAAGGTTGATTATA+AGG | + | chr7.3:42174943-42174962 | MS.gene89335:CDS | 35.0% |
| ! | TAATGTGAGGTGGTTTGTAA+TGG | + | chr7.3:42173410-42173429 | MS.gene89335:CDS | 35.0% |
| ! | TGACAAGGTTGATTATAAGG+TGG | + | chr7.3:42174946-42174965 | MS.gene89335:CDS | 35.0% |
| ! | TGGTTATCAAGTTGTTGCTT+GGG | + | chr7.3:42175267-42175286 | MS.gene89335:intron | 35.0% |
| ! | TTGGTTATCAAGTTGTTGCT+TGG | + | chr7.3:42175266-42175285 | MS.gene89335:intron | 35.0% |
| ACATCATACAAATCGGATCC+GGG | + | chr7.3:42174620-42174639 | MS.gene89335:CDS | 40.0% | |
| CATCAACACGTTCCATGTTT+GGG | - | chr7.3:42174583-42174602 | None:intergenic | 40.0% | |
| CGTTCCATGTTTGGGAAAAT+TGG | - | chr7.3:42174575-42174594 | None:intergenic | 40.0% | |
| CTGATGAAAACCAGGTTCTT+TGG | - | chr7.3:42173715-42173734 | None:intergenic | 40.0% | |
| CTTCGGCAGATTCTATGATT+AGG | - | chr7.3:42173104-42173123 | None:intergenic | 40.0% | |
| GAGAAGTCAAAACACTGTCT+AGG | - | chr7.3:42175638-42175657 | None:intergenic | 40.0% | |
| GATATACGTGGTAACCCTTA+TGG | + | chr7.3:42174488-42174507 | MS.gene89335:CDS | 40.0% | |
| GTTCAGATTACCAAAGAACC+TGG | + | chr7.3:42173702-42173721 | MS.gene89335:CDS | 40.0% | |
| GTTGATTATAAGGTGGCTCA+TGG | + | chr7.3:42174953-42174972 | MS.gene89335:CDS | 40.0% | |
| TAGGGTTAGATAATGTGAGG+TGG | + | chr7.3:42173400-42173419 | MS.gene89335:CDS | 40.0% | |
| TTGGCAGAGACTTTATATGG+CGG | - | chr7.3:42173297-42173316 | None:intergenic | 40.0% | |
| ! | GAGCTTGTGAAGATTTTGGA+CGG | + | chr7.3:42173609-42173628 | MS.gene89335:CDS | 40.0% |
| ! | GGAACCAATTTTCCCAAACA+TGG | + | chr7.3:42174568-42174587 | MS.gene89335:CDS | 40.0% |
| ! | GTGTTGGCAGAGACTTTATA+TGG | - | chr7.3:42173300-42173319 | None:intergenic | 40.0% |
| ! | TTATCAAGTTGTTGCTTGGG+TGG | + | chr7.3:42175270-42175289 | MS.gene89335:intron | 40.0% |
| ! | TTTTACACCATGGCTTATGG+CGG | + | chr7.3:42173552-42173571 | MS.gene89335:CDS | 40.0% |
| !! | ATATGATGATGGTTCAGGGA+AGG | + | chr7.3:42174919-42174938 | MS.gene89335:CDS | 40.0% |
| !! | ATGTTCAAGAGGTGTCACTT+GGG | - | chr7.3:42175220-42175239 | None:intergenic | 40.0% |
| !! | CAAAGAACCTGGTTTTCATC+AGG | + | chr7.3:42173713-42173732 | MS.gene89335:CDS | 40.0% |
| !! | CACATTTTGTTTGGAATCGG+CGG | + | chr7.3:42173147-42173166 | MS.gene89335:CDS | 40.0% |
| !! | GTTTGCTATAAGCTACCCTT+TGG | + | chr7.3:42173581-42173600 | MS.gene89335:CDS | 40.0% |
| !!! | TGATTAGGGTTTTTGGAGTG+CGG | - | chr7.3:42173089-42173108 | None:intergenic | 40.0% |
| AAACAATGTTCAAGCCACCG+AGG | - | chr7.3:42175483-42175502 | None:intergenic | 45.0% | |
| AATGAGACCAATGGTGCAAC+TGG | - | chr7.3:42174530-42174549 | None:intergenic | 45.0% | |
| ACACACGGATCTTGACTAAC+GGG | - | chr7.3:42174827-42174846 | None:intergenic | 45.0% | |
| AGCCGTTTAAAAACGAGACG+TGG | + | chr7.3:42173259-42173278 | MS.gene89335:CDS | 45.0% | |
| ATCTCGCAGCATTGTCTTCT+TGG | - | chr7.3:42175759-42175778 | None:intergenic | 45.0% | |
| ATTTCGACAACACCGTAACG+AGG | - | chr7.3:42173467-42173486 | None:intergenic | 45.0% | |
| CACACACGGATCTTGACTAA+CGG | - | chr7.3:42174828-42174847 | None:intergenic | 45.0% | |
| GCATCAACACGTTCCATGTT+TGG | - | chr7.3:42174584-42174603 | None:intergenic | 45.0% | |
| TCAAGATCCGTGTGTGAAAC+CGG | + | chr7.3:42174832-42174851 | MS.gene89335:CDS | 45.0% | |
| TGCTATAAGCTACCCTTTGG+CGG | + | chr7.3:42173584-42173603 | MS.gene89335:CDS | 45.0% | |
| ! | AGAGATATTGGTCGGCTCTT+CGG | - | chr7.3:42173127-42173146 | None:intergenic | 45.0% |
| ! | ATGGATCGGATTGAGGGTTT+TGG | + | chr7.3:42174866-42174885 | MS.gene89335:CDS | 45.0% |
| ! | ATGTTGATAAGTGTCCTCGG+TGG | + | chr7.3:42175466-42175485 | MS.gene89335:intron | 45.0% |
| ! | GTGCTGCTAGTAAGCCATAA+GGG | - | chr7.3:42174505-42174524 | None:intergenic | 45.0% |
| ! | TACACAACCGGTTTCACACA+CGG | - | chr7.3:42174842-42174861 | None:intergenic | 45.0% |
| ! | TGTGCTGCTAGTAAGCCATA+AGG | - | chr7.3:42174506-42174525 | None:intergenic | 45.0% |
| !! | ATCGGATTGAGGGTTTTGGT+CGG | + | chr7.3:42174870-42174889 | MS.gene89335:CDS | 45.0% |
| !! | CATGTTCAAGAGGTGTCACT+TGG | - | chr7.3:42175221-42175240 | None:intergenic | 45.0% |
| !! | GGCCACGTCTCGTTTTTAAA+CGG | - | chr7.3:42173264-42173283 | None:intergenic | 45.0% |
| !!! | GATTAGGGTTTTTGGAGTGC+GGG | - | chr7.3:42173088-42173107 | None:intergenic | 45.0% |
| !!! | AAAACTTAATTTTAAATTAT+AGG | - | chr7.3:42175300-42175319 | None:intergenic | 5.0% |
| AACACCGTAACGAGGTTGTC+GGG | - | chr7.3:42173459-42173478 | None:intergenic | 50.0% | |
| AGCACATCCAGTTGCACCAT+TGG | + | chr7.3:42174520-42174539 | MS.gene89335:CDS | 50.0% | |
| CAACACCGTAACGAGGTTGT+CGG | - | chr7.3:42173460-42173479 | None:intergenic | 50.0% | |
| CATACAAATCGGATCCGGGT+CGG | + | chr7.3:42174624-42174643 | MS.gene89335:CDS | 50.0% | |
| GATTGTTGGATAGTCCGACC+CGG | - | chr7.3:42174641-42174660 | None:intergenic | 50.0% | |
| TATAAGCTACCCTTTGGCGG+CGG | + | chr7.3:42173587-42173606 | MS.gene89335:CDS | 50.0% | |
| TTATATGGCGGTGACGTCTC+TGG | - | chr7.3:42173285-42173304 | None:intergenic | 50.0% | |
| ! | ACGGATCTTGACTAACGGGT+CGG | - | chr7.3:42174823-42174842 | None:intergenic | 50.0% |
| ! | GGCGGAGCTTGTGAAGATTT+TGG | + | chr7.3:42173605-42173624 | MS.gene89335:CDS | 50.0% |
| ! | TTCAGGGAAGGAGTGTGACA+AGG | + | chr7.3:42174931-42174950 | MS.gene89335:CDS | 50.0% |
| !! | TCGGATTGAGGGTTTTGGTC+GGG | + | chr7.3:42174871-42174890 | MS.gene89335:CDS | 50.0% |
| !! | TTCAAGAGGTGTCACTTGGG+TGG | - | chr7.3:42175217-42175236 | None:intergenic | 50.0% |
| ACACCGTAACGAGGTTGTCG+GGG | - | chr7.3:42173458-42173477 | None:intergenic | 55.0% | |
| CTTCCCCGACAACCTCGTTA+CGG | + | chr7.3:42173452-42173471 | MS.gene89335:CDS | 55.0% | |
| GAGGTTGTCGGGGAAGAAGA+CGG | - | chr7.3:42173448-42173467 | None:intergenic | 55.0% | |
| GCCACCAGAGTTCGCTATAG+TGG | - | chr7.3:42173200-42173219 | None:intergenic | 55.0% | |
| GCCACTATAGCGAACTCTGG+TGG | + | chr7.3:42173196-42173215 | MS.gene89335:CDS | 55.0% | |
| GTCGCCACTATAGCGAACTC+TGG | + | chr7.3:42173193-42173212 | MS.gene89335:CDS | 55.0% | |
| TACACCATGGCTTATGGCGG+CGG | + | chr7.3:42173555-42173574 | MS.gene89335:CDS | 55.0% | |
| TGGCGTCAAAACACCACCAG+AGG | + | chr7.3:42173216-42173235 | MS.gene89335:CDS | 55.0% | |
| ! | ATTGGTCGGCTCTTCGGCTT+CGG | - | chr7.3:42173121-42173140 | None:intergenic | 55.0% |
| ! | CGGATCTTGACTAACGGGTC+GGG | - | chr7.3:42174822-42174841 | None:intergenic | 55.0% |
| !! | CGGATTGAGGGTTTTGGTCG+GGG | + | chr7.3:42174872-42174891 | MS.gene89335:CDS | 55.0% |
| !! | GTTTTGGTCGGGGATTGACC+CGG | + | chr7.3:42174882-42174901 | MS.gene89335:CDS | 55.0% |
| !!! | GGGTTTTTGGAGTGCGGGTT+TGG | - | chr7.3:42173083-42173102 | None:intergenic | 55.0% |
| ACACCACCAGAGGCTTCGTG+TGG | + | chr7.3:42173226-42173245 | MS.gene89335:CDS | 60.0% | |
| GTCTAGCCACACGAAGCCTC+TGG | - | chr7.3:42173235-42173254 | None:intergenic | 60.0% | |
| TAGCCACACGAAGCCTCTGG+TGG | - | chr7.3:42173232-42173251 | None:intergenic | 60.0% | |
| TCACAAGCTCCGCCGCCAAA+GGG | - | chr7.3:42173599-42173618 | None:intergenic | 60.0% | |
| TCGGCGGCTCTTCAGCTACA+TGG | + | chr7.3:42173163-42173182 | MS.gene89335:CDS | 60.0% | |
| TTCACAAGCTCCGCCGCCAA+AGG | - | chr7.3:42173600-42173619 | None:intergenic | 60.0% | |
| ACCATGGCTTATGGCGGCGG+AGG | + | chr7.3:42173558-42173577 | MS.gene89335:CDS | 65.0% | |
| CCATGGCTTATGGCGGCGGA+GGG | + | chr7.3:42173559-42173578 | MS.gene89335:CDS | 65.0% | |
| CCCTCCGCCGCCATAAGCCA+TGG | - | chr7.3:42173562-42173581 | None:intergenic | 70.0% | |
| GGTCGGGGATTGACCCGGTC+CGG | + | chr7.3:42174887-42174906 | MS.gene89335:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 42173075 | 42175866 | 42173075 | ID=MS.gene89335 |
| chr7.3 | mRNA | 42173075 | 42175866 | 42173075 | ID=MS.gene89335.t1;Parent=MS.gene89335 |
| chr7.3 | exon | 42173075 | 42173734 | 42173075 | ID=MS.gene89335.t1.exon1;Parent=MS.gene89335.t1 |
| chr7.3 | CDS | 42173075 | 42173734 | 42173075 | ID=cds.MS.gene89335.t1;Parent=MS.gene89335.t1 |
| chr7.3 | exon | 42174485 | 42175030 | 42174485 | ID=MS.gene89335.t1.exon2;Parent=MS.gene89335.t1 |
| chr7.3 | CDS | 42174485 | 42175030 | 42174485 | ID=cds.MS.gene89335.t1;Parent=MS.gene89335.t1 |
| chr7.3 | exon | 42175753 | 42175866 | 42175753 | ID=MS.gene89335.t1.exon3;Parent=MS.gene89335.t1 |
| chr7.3 | CDS | 42175753 | 42175866 | 42175753 | ID=cds.MS.gene89335.t1;Parent=MS.gene89335.t1 |
| Gene Sequence |
| Protein sequence |
