Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89977.t1 | XP_003606266.1 | 86.1 | 267 | 37 | 0 | 1 | 267 | 1 | 267 | 2.20E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89977.t1 | Q8LJS2 | 45.1 | 297 | 119 | 5 | 5 | 263 | 1 | 291 | 1.5e-35 | 151.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89977.t1 | G7JL03 | 86.1 | 267 | 37 | 0 | 1 | 267 | 1 | 267 | 1.6e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051904 | MS.gene89977 | 0.809099 | 2.24E-50 | -1.69E-46 |
| MS.gene057092 | MS.gene89977 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene057235 | MS.gene89977 | 0.813427 | 2.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89977.t1 | MTR_4g055440 | 91.386 | 267 | 23 | 0 | 1 | 267 | 1 | 267 | 9.47e-143 | 401 |
| MS.gene89977.t1 | MTR_4g055450 | 43.011 | 372 | 95 | 8 | 1 | 267 | 1 | 360 | 1.13e-65 | 209 |
| MS.gene89977.t1 | MTR_2g084815 | 53.901 | 141 | 56 | 3 | 5 | 143 | 1 | 134 | 2.03e-39 | 137 |
| MS.gene89977.t1 | MTR_2g084815 | 54.930 | 142 | 53 | 4 | 5 | 143 | 1 | 134 | 2.90e-39 | 139 |
| MS.gene89977.t1 | MTR_2g084815 | 54.930 | 142 | 53 | 4 | 5 | 143 | 1 | 134 | 3.34e-38 | 134 |
| MS.gene89977.t1 | MTR_2g084815 | 61.798 | 89 | 34 | 0 | 5 | 93 | 1 | 89 | 2.02e-31 | 117 |
| MS.gene89977.t1 | MTR_4g074010 | 65.385 | 52 | 18 | 0 | 216 | 267 | 82 | 133 | 6.42e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89977.t1 | AT5G22650 | 38.514 | 296 | 127 | 12 | 5 | 261 | 1 | 280 | 2.63e-28 | 110 |
| MS.gene89977.t1 | AT5G22650 | 38.047 | 297 | 128 | 13 | 5 | 261 | 1 | 281 | 1.50e-26 | 105 |
| MS.gene89977.t1 | AT5G03740 | 45.385 | 130 | 56 | 5 | 5 | 132 | 1 | 117 | 1.49e-24 | 100 |
| MS.gene89977.t1 | AT3G44750 | 36.290 | 248 | 119 | 7 | 5 | 247 | 1 | 214 | 4.00e-20 | 87.0 |
| MS.gene89977.t1 | AT3G44750 | 37.143 | 245 | 118 | 7 | 5 | 247 | 1 | 211 | 1.52e-19 | 85.5 |
| MS.gene89977.t1 | AT2G27840 | 35.220 | 159 | 94 | 6 | 5 | 159 | 1 | 154 | 8.28e-16 | 73.2 |
| MS.gene89977.t1 | AT2G27840 | 36.765 | 136 | 77 | 6 | 5 | 137 | 1 | 130 | 1.46e-15 | 73.6 |
| MS.gene89977.t1 | AT2G27840 | 37.903 | 124 | 68 | 6 | 5 | 125 | 1 | 118 | 1.56e-14 | 69.3 |
Find 51 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTTGAAGGCTGCAAATTC+TGG | 0.194784 | 4.2:-48004572 | MS.gene89977:CDS |
| GCTGATCTGAAGTTTGTTAT+AGG | 0.213108 | 4.2:-48005471 | MS.gene89977:CDS |
| TGGAACGACCAATGGAGTTT+TGG | 0.262143 | 4.2:-48006193 | MS.gene89977:CDS |
| TCAGACTCTGATTCTTCTTC+AGG | 0.263791 | 4.2:+48004536 | None:intergenic |
| ACCTGAACTTGATCCTTTGA+TGG | 0.316370 | 4.2:-48004710 | MS.gene89977:CDS |
| ATGGGACTCTGGTTCTTTGC+AGG | 0.347510 | 4.2:+48003320 | None:intergenic |
| AGAAGAGACTCCTGCTAAAA+AGG | 0.352924 | 4.2:-48004172 | MS.gene89977:intron |
| ATCAAAAGCTCAAGCTTTGA+AGG | 0.357438 | 4.2:-48004585 | MS.gene89977:intron |
| TTTCTGGATTCAAAATTGTT+TGG | 0.387861 | 4.2:-48005350 | MS.gene89977:intron |
| AGGCCTGCCACCTCCAAATC+TGG | 0.388245 | 4.2:-48003185 | MS.gene89977:CDS |
| TTAGCTTTCTTGGTAGGAAC+GGG | 0.397776 | 4.2:+48003992 | None:intergenic |
| CCACCCTTCTTCATAGGGTG+GGG | 0.414172 | 4.2:+48003359 | None:intergenic |
| GATTCTTCTTCAGGTTCAGC+AGG | 0.415898 | 4.2:+48004545 | None:intergenic |
| TGTTATAGGAACTCTTACTA+AGG | 0.418073 | 4.2:-48005457 | MS.gene89977:CDS |
| TCCACCCTTCTTCATAGGGT+GGG | 0.423820 | 4.2:+48003358 | None:intergenic |
| TCCATCAAAGGATCAAGTTC+AGG | 0.427561 | 4.2:+48004709 | None:intergenic |
| AAAACATACTTGTTAGAAAT+GGG | 0.436551 | 4.2:+48003302 | None:intergenic |
| GATGATGACTCTGACAGTTC+TGG | 0.436644 | 4.2:-48004828 | MS.gene89977:intron |
| TATCCCGTACATTCATCATC+TGG | 0.443307 | 4.2:+48005664 | None:intergenic |
| TGACCAGATTTGGAGGTGGC+AGG | 0.447518 | 4.2:+48003182 | None:intergenic |
| ACTTTCAAATACAGAACAAC+AGG | 0.463446 | 4.2:+48005495 | None:intergenic |
| CCCGTCTAGAACGATATTCA+AGG | 0.477788 | 4.2:+48005416 | None:intergenic |
| AACTCCCCACCCTATGAAGA+AGG | 0.490850 | 4.2:-48003363 | MS.gene89977:CDS |
| TTCCACCCTTCTTCATAGGG+TGG | 0.491279 | 4.2:+48003357 | None:intergenic |
| CTTTAGGTTGCACTCGGGGA+AGG | 0.500046 | 4.2:-48005540 | MS.gene89977:intron |
| TTAGGTGTCGAGGTTAAGGC+TGG | 0.509954 | 4.2:-48005706 | MS.gene89977:intron |
| TGATCCAGATGATGAATGTA+CGG | 0.512625 | 4.2:-48005668 | MS.gene89977:CDS |
| TGTTATCTTTAGGTTGCACT+CGG | 0.512638 | 4.2:-48005546 | MS.gene89977:intron |
| TTTAGGTTGCACTCGGGGAA+GGG | 0.515624 | 4.2:-48005539 | MS.gene89977:intron |
| CCTTGAATATCGTTCTAGAC+GGG | 0.516260 | 4.2:-48005416 | MS.gene89977:CDS |
| CGAGGTTAAGGCTGGACAAT+CGG | 0.524968 | 4.2:-48005698 | MS.gene89977:CDS |
| TTTAGCTTTCTTGGTAGGAA+CGG | 0.527052 | 4.2:+48003991 | None:intergenic |
| CTTTCAAATGGAACGACCAA+TGG | 0.531330 | 4.2:-48006201 | None:intergenic |
| TGAACTTTCTCACAATTCAA+AGG | 0.534774 | 4.2:-48005388 | MS.gene89977:CDS |
| TCTTCTTCACTCTCACTAGC+AGG | 0.540100 | 4.2:+48004189 | None:intergenic |
| ACCTTGAATATCGTTCTAGA+CGG | 0.542911 | 4.2:-48005417 | MS.gene89977:CDS |
| TGGTTCTTTGCAGGACTCTG+AGG | 0.553469 | 4.2:+48003329 | None:intergenic |
| AATGCTACTCCTGAAAAGAC+TGG | 0.563878 | 4.2:-48003968 | MS.gene89977:intron |
| ACTTGTTAGAAATGGGACTC+TGG | 0.564512 | 4.2:+48003309 | None:intergenic |
| GTTATCTTTAGGTTGCACTC+GGG | 0.569880 | 4.2:-48005545 | MS.gene89977:intron |
| GATCCAGATGATGAATGTAC+GGG | 0.574494 | 4.2:-48005667 | MS.gene89977:CDS |
| TATCTACCACGGTCCATCAA+AGG | 0.579047 | 4.2:+48004697 | None:intergenic |
| TTGTTGACCAGATTTGGAGG+TGG | 0.610211 | 4.2:+48003178 | None:intergenic |
| TGATATTTCACTCAATGAAG+AGG | 0.611166 | 4.2:-48004501 | MS.gene89977:intron |
| CCCCACCCTATGAAGAAGGG+TGG | 0.617916 | 4.2:-48003359 | MS.gene89977:CDS |
| TTATCTTTAGGTTGCACTCG+GGG | 0.622300 | 4.2:-48005544 | MS.gene89977:intron |
| ATTCAAGGTAGTCTGAGGAA+AGG | 0.624002 | 4.2:+48005431 | None:intergenic |
| ACGATATTCAAGGTAGTCTG+AGG | 0.625009 | 4.2:+48005426 | None:intergenic |
| ACTCCCCACCCTATGAAGAA+GGG | 0.639409 | 4.2:-48003362 | MS.gene89977:CDS |
| CTTGAATATCGTTCTAGACG+GGG | 0.652881 | 4.2:-48005415 | MS.gene89977:CDS |
| CTTGATCCTTTGATGGACCG+TGG | 0.701102 | 4.2:-48004703 | MS.gene89977:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATTTGTTAATATTGA+TGG | - | chr4.2:48004379-48004398 | MS.gene89977:intron | 10.0% |
| !! | AAATAACCAAACTTTATTAA+CGG | - | chr4.2:48004285-48004304 | MS.gene89977:intron | 15.0% |
| !! | GTAAATTAAAAATTTCTACA+TGG | + | chr4.2:48003547-48003566 | None:intergenic | 15.0% |
| !! | TTATGATAAATTCTTTCATT+TGG | - | chr4.2:48005086-48005105 | MS.gene89977:intron | 15.0% |
| !!! | TTATTATACTTGTTATCTTT+AGG | - | chr4.2:48003786-48003805 | MS.gene89977:intron | 15.0% |
| !! | AATTAAATTTGTGTTGTAGA+TGG | - | chr4.2:48005935-48005954 | MS.gene89977:intron | 20.0% |
| !! | ACAAATAAAATGAATACAAC+AGG | + | chr4.2:48004370-48004389 | None:intergenic | 20.0% |
| !! | ACGAAGAAAAAAAAAAACAT+TGG | + | chr4.2:48005762-48005781 | None:intergenic | 20.0% |
| !! | AGATAAATGATAAATTTGTG+AGG | + | chr4.2:48004446-48004465 | None:intergenic | 20.0% |
| !! | AGCATTAAAAAATCACAATT+AGG | + | chr4.2:48006131-48006150 | None:intergenic | 20.0% |
| !! | ATAAAATAAAAACTACTGCA+AGG | + | chr4.2:48003512-48003531 | None:intergenic | 20.0% |
| !! | TGCTTTGTATTATACAATTA+GGG | - | chr4.2:48005415-48005434 | MS.gene89977:CDS | 20.0% |
| !! | TTACAAATGTTATATTGTTC+TGG | - | chr4.2:48004555-48004574 | MS.gene89977:CDS | 20.0% |
| !!! | AAAAACATACTTGTTAGAAA+TGG | + | chr4.2:48006044-48006063 | None:intergenic | 20.0% |
| !!! | AAAACATACTTGTTAGAAAT+GGG | + | chr4.2:48006043-48006062 | None:intergenic | 20.0% |
| !!! | AATGTGATCTTATTTAACAT+TGG | - | chr4.2:48003605-48003624 | MS.gene89977:intron | 20.0% |
| !!! | ATAAAGTTTGGTTATTTTGA+CGG | + | chr4.2:48004282-48004301 | None:intergenic | 20.0% |
| !!! | CTTTATATTAGAGAATGTTT+TGG | - | chr4.2:48004059-48004078 | MS.gene89977:intron | 20.0% |
| !!! | TTAACATTGGTTTGAATTTT+AGG | - | chr4.2:48003618-48003637 | MS.gene89977:intron | 20.0% |
| !!! | TTATTTCACTTTGTGTTATT+TGG | - | chr4.2:48004598-48004617 | MS.gene89977:intron | 20.0% |
| ! | AAAAAATCAATTCTCATACC+AGG | + | chr4.2:48005033-48005052 | None:intergenic | 25.0% |
| ! | AAGAACAAAAAGAGAACAAA+TGG | - | chr4.2:48005311-48005330 | MS.gene89977:intron | 25.0% |
| ! | AATCAGATCTGAGAAAAAAA+TGG | - | chr4.2:48003337-48003356 | MS.gene89977:CDS | 25.0% |
| ! | ACACATTTATTAGGATGATA+AGG | + | chr4.2:48004417-48004436 | None:intergenic | 25.0% |
| ! | ACTTAACAAAATCATTCAGA+AGG | + | chr4.2:48006098-48006117 | None:intergenic | 25.0% |
| ! | AGAACAAAAAGAGAACAAAT+GGG | - | chr4.2:48005312-48005331 | MS.gene89977:intron | 25.0% |
| ! | AGAGTTTATTTGATTCTTCT+TGG | - | chr4.2:48004992-48005011 | MS.gene89977:intron | 25.0% |
| ! | CTGCTTTGTATTATACAATT+AGG | - | chr4.2:48005414-48005433 | MS.gene89977:CDS | 25.0% |
| ! | GCAACAAAAGATTAAACATA+AGG | - | chr4.2:48005499-48005518 | MS.gene89977:CDS | 25.0% |
| ! | TAATGATGATAATACCGTAA+CGG | + | chr4.2:48003745-48003764 | None:intergenic | 25.0% |
| ! | TTTATCATTCAAACAGAGAA+TGG | + | chr4.2:48005846-48005865 | None:intergenic | 25.0% |
| ! | TTTCTGGATTCAAAATTGTT+TGG | - | chr4.2:48003992-48004011 | MS.gene89977:CDS | 25.0% |
| ! | TTTGAGTATTTATCATGTGA+CGG | + | chr4.2:48005628-48005647 | None:intergenic | 25.0% |
| !! | ACAAAAGTATATAACCAATC+AGG | + | chr4.2:48004031-48004050 | None:intergenic | 25.0% |
| !! | ATATCTAAAACAGAAAACTG+AGG | + | chr4.2:48005690-48005709 | None:intergenic | 25.0% |
| !! | CAATTTTGAATCCAGAAAAA+TGG | + | chr4.2:48003990-48004009 | None:intergenic | 25.0% |
| !! | CTTTGTTATCAATTCCAATT+CGG | + | chr4.2:48004231-48004250 | None:intergenic | 25.0% |
| !! | TATTTCCTTTTAGCATACAA+TGG | + | chr4.2:48004957-48004976 | None:intergenic | 25.0% |
| !! | TTATATTGTTCTGGTTAAGT+TGG | - | chr4.2:48004564-48004583 | MS.gene89977:CDS | 25.0% |
| !! | TTGGAATTGATAACAAAGTT+TGG | - | chr4.2:48004233-48004252 | MS.gene89977:intron | 25.0% |
| !!! | CAATGTTTTAAAAACCGAAT+TGG | - | chr4.2:48004214-48004233 | MS.gene89977:CDS | 25.0% |
| !!! | CAATTCGGTTTTTAAAACAT+TGG | + | chr4.2:48004216-48004235 | None:intergenic | 25.0% |
| !!! | GAGAATTGATTTTTTCTTGT+TGG | - | chr4.2:48005038-48005057 | MS.gene89977:intron | 25.0% |
| !!! | GATTTTTTAATGCTATTTCC+AGG | - | chr4.2:48006137-48006156 | MS.gene89977:intron | 25.0% |
| !!! | TACATGGTTTAATGTTTTGA+AGG | - | chr4.2:48005277-48005296 | MS.gene89977:intron | 25.0% |
| !!! | TTTATTTTGTTGACCAGATT+TGG | + | chr4.2:48006173-48006192 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTGTTGGTATAAG+TGG | - | chr4.2:48005047-48005066 | MS.gene89977:intron | 25.0% |
| AAATTTGAACCATGACACAA+AGG | + | chr4.2:48004138-48004157 | None:intergenic | 30.0% | |
| AAGATATGATCACTGCATAA+TGG | + | chr4.2:48005915-48005934 | None:intergenic | 30.0% | |
| AATGATGATAATACCGTAAC+GGG | + | chr4.2:48003744-48003763 | None:intergenic | 30.0% | |
| ACTTTCAAATACAGAACAAC+AGG | + | chr4.2:48003850-48003869 | None:intergenic | 30.0% | |
| AGGCATGTTACACATTTATT+AGG | + | chr4.2:48004426-48004445 | None:intergenic | 30.0% | |
| ATAAGCTAAAAAATGCCTAC+AGG | - | chr4.2:48005557-48005576 | MS.gene89977:intron | 30.0% | |
| GAACAAAAAGAGAACAAATG+GGG | - | chr4.2:48005313-48005332 | MS.gene89977:intron | 30.0% | |
| GCACTTAATCAATTAGTGTT+TGG | - | chr4.2:48005461-48005480 | MS.gene89977:CDS | 30.0% | |
| GTACGATAATTTAGTGATTG+AGG | + | chr4.2:48003308-48003327 | None:intergenic | 30.0% | |
| GTTTAGTGCGTGTATATAAA+TGG | - | chr4.2:48003469-48003488 | MS.gene89977:intron | 30.0% | |
| TCAATCCATTGTATGCTAAA+AGG | - | chr4.2:48004949-48004968 | MS.gene89977:intron | 30.0% | |
| TGAACTTTCTCACAATTCAA+AGG | - | chr4.2:48003954-48003973 | MS.gene89977:intron | 30.0% | |
| TGATATTTCACTCAATGAAG+AGG | - | chr4.2:48004841-48004860 | MS.gene89977:CDS | 30.0% | |
| TGATTCTTCTTGGTAAACAT+TGG | - | chr4.2:48005002-48005021 | MS.gene89977:intron | 30.0% | |
| TGTTATAGGAACTCTTACTA+AGG | - | chr4.2:48003885-48003904 | MS.gene89977:intron | 30.0% | |
| TGTTCTTTATGTGTGATTGA+CGG | - | chr4.2:48004906-48004925 | MS.gene89977:intron | 30.0% | |
| ! | AATCAGAGTCTGATTTTTCT+GGG | - | chr4.2:48004816-48004835 | MS.gene89977:intron | 30.0% |
| ! | AGAGGTATATTAGTAACTTC+AGG | - | chr4.2:48004859-48004878 | MS.gene89977:intron | 30.0% |
| ! | ATAACATTACCAGTCTTTTC+AGG | + | chr4.2:48005386-48005405 | None:intergenic | 30.0% |
| ! | CAACTAGGTTTTCAAAACAT+TGG | + | chr4.2:48004102-48004121 | None:intergenic | 30.0% |
| ! | CTATGATAGGTTTTTATACC+GGG | - | chr4.2:48003370-48003389 | MS.gene89977:CDS | 30.0% |
| ! | GCTATGATAGGTTTTTATAC+CGG | - | chr4.2:48003369-48003388 | MS.gene89977:CDS | 30.0% |
| ! | TTCTAAAAATAAGCACCTGT+AGG | + | chr4.2:48005575-48005594 | None:intergenic | 30.0% |
| !! | TGCATAATGGATCTTTAAAC+AGG | + | chr4.2:48005902-48005921 | None:intergenic | 30.0% |
| !! | TGGTCTTTATTTGCTATGAT+AGG | - | chr4.2:48003357-48003376 | MS.gene89977:CDS | 30.0% |
| !! | TTTATGTTATTTCCCCGTTA+CGG | - | chr4.2:48003728-48003747 | MS.gene89977:intron | 30.0% |
| !!! | AGTAGCATTTTTAGCTTTCT+TGG | + | chr4.2:48005363-48005382 | None:intergenic | 30.0% |
| !!! | ATGGTTTAATGTTTTGAAGG+TGG | - | chr4.2:48005280-48005299 | MS.gene89977:intron | 30.0% |
| !!! | CAATGTTTTGAAAACCTAGT+TGG | - | chr4.2:48004100-48004119 | MS.gene89977:intron | 30.0% |
| AACCAAACTTTATTAACGGC+TGG | - | chr4.2:48004289-48004308 | MS.gene89977:intron | 35.0% | |
| AACCAGCCGTTAATAAAGTT+TGG | + | chr4.2:48004294-48004313 | None:intergenic | 35.0% | |
| ACTACACTGGTACTTATACA+TGG | - | chr4.2:48005261-48005280 | MS.gene89977:intron | 35.0% | |
| ACTGGCTGAATTATTTGGTT+CGG | - | chr4.2:48004323-48004342 | MS.gene89977:intron | 35.0% | |
| AGTGCGTGTATATAAATGGT+GGG | - | chr4.2:48003473-48003492 | MS.gene89977:intron | 35.0% | |
| ATACAATTAGGGTCGTGAAT+GGG | - | chr4.2:48005426-48005445 | MS.gene89977:CDS | 35.0% | |
| ATGATGATAATACCGTAACG+GGG | + | chr4.2:48003743-48003762 | None:intergenic | 35.0% | |
| CTCAGATCTGATTGCTTAAT+TGG | + | chr4.2:48003330-48003349 | None:intergenic | 35.0% | |
| CTTACAAAAACCCGTATGTA+AGG | - | chr4.2:48003394-48003413 | MS.gene89977:intron | 35.0% | |
| CTTCTCTTGCAAAATGTGTT+TGG | - | chr4.2:48004177-48004196 | MS.gene89977:CDS | 35.0% | |
| GATATGAAGAGAAAATGCAG+TGG | + | chr4.2:48003272-48003291 | None:intergenic | 35.0% | |
| GCAGTGGTTAAAAGTGAAAT+TGG | + | chr4.2:48003256-48003275 | None:intergenic | 35.0% | |
| GTTCAACTGGCTGAATTATT+TGG | - | chr4.2:48004318-48004337 | MS.gene89977:intron | 35.0% | |
| TACGAATCCATGTATCATGA+AGG | + | chr4.2:48005790-48005809 | None:intergenic | 35.0% | |
| TAGTGCGTGTATATAAATGG+TGG | - | chr4.2:48003472-48003491 | MS.gene89977:intron | 35.0% | |
| TATACAATTAGGGTCGTGAA+TGG | - | chr4.2:48005425-48005444 | MS.gene89977:CDS | 35.0% | |
| TGATCCAGATGATGAATGTA+CGG | - | chr4.2:48003674-48003693 | MS.gene89977:intron | 35.0% | |
| TTAAGAGACAGTATCTACCA+CGG | + | chr4.2:48004659-48004678 | None:intergenic | 35.0% | |
| ! | ACCTTGAATATCGTTCTAGA+CGG | - | chr4.2:48003925-48003944 | MS.gene89977:intron | 35.0% |
| ! | ATCAAAAGCTCAAGCTTTGA+AGG | - | chr4.2:48004757-48004776 | MS.gene89977:intron | 35.0% |
| ! | ATTTTACCCCAAAACTCCAT+TGG | + | chr4.2:48003160-48003179 | None:intergenic | 35.0% |
| ! | ATTTTGTTGACCAGATTTGG+AGG | + | chr4.2:48006170-48006189 | None:intergenic | 35.0% |
| ! | CTTTATTAACGGCTGGTTAA+AGG | - | chr4.2:48004296-48004315 | MS.gene89977:intron | 35.0% |
| ! | GAATCAGAGTCTGATTTTTC+TGG | - | chr4.2:48004815-48004834 | MS.gene89977:intron | 35.0% |
| ! | TTTTTCCACCCTTCTTCATA+GGG | + | chr4.2:48005991-48006010 | None:intergenic | 35.0% |
| !! | CAGTTGATTACCTTTTTAGC+AGG | + | chr4.2:48005183-48005202 | None:intergenic | 35.0% |
| !! | GCTGATCTGAAGTTTGTTAT+AGG | - | chr4.2:48003871-48003890 | MS.gene89977:intron | 35.0% |
| !! | TGTTATCTTTAGGTTGCACT+CGG | - | chr4.2:48003796-48003815 | MS.gene89977:intron | 35.0% |
| !! | TGTTGAGTTGAGAAGTGTAT+TGG | + | chr4.2:48003442-48003461 | None:intergenic | 35.0% |
| !! | TTTAGCTTTCTTGGTAGGAA+CGG | + | chr4.2:48005354-48005373 | None:intergenic | 35.0% |
| !!! | AATGTTTTGAAGGTGGATGA+GGG | - | chr4.2:48005287-48005306 | MS.gene89977:intron | 35.0% |
| !!! | AATTTTAGGTGTCGAGGTTA+AGG | - | chr4.2:48003632-48003651 | MS.gene89977:intron | 35.0% |
| !!! | CAAGTCTGTTTTTACATGCA+TGG | - | chr4.2:48005719-48005738 | MS.gene89977:intron | 35.0% |
| !!! | GCATTTTTAGCTTTCTTGGT+AGG | + | chr4.2:48005359-48005378 | None:intergenic | 35.0% |
| !!! | TAATGTTTTGAAGGTGGATG+AGG | - | chr4.2:48005286-48005305 | MS.gene89977:intron | 35.0% |
| !!! | TCTGTTTTTACATGCATGGT+TGG | - | chr4.2:48005723-48005742 | MS.gene89977:intron | 35.0% |
| !!! | TGGTAAACATTGGTTTTACC+TGG | - | chr4.2:48005012-48005031 | MS.gene89977:intron | 35.0% |
| !!! | TGGTTCGGTTTTTAACACAT+TGG | - | chr4.2:48004338-48004357 | MS.gene89977:intron | 35.0% |
| AAAAAGAGAACAAATGGGGC+TGG | - | chr4.2:48005317-48005336 | MS.gene89977:intron | 40.0% | |
| AAATTCGTACGTGTTCCTTG+TGG | - | chr4.2:48004478-48004497 | MS.gene89977:intron | 40.0% | |
| AATGCTACTCCTGAAAAGAC+TGG | - | chr4.2:48005374-48005393 | MS.gene89977:CDS | 40.0% | |
| ACACTCATCACCTTACATAC+GGG | + | chr4.2:48003407-48003426 | None:intergenic | 40.0% | |
| ACCTGAACTTGATCCTTTGA+TGG | - | chr4.2:48004632-48004651 | MS.gene89977:intron | 40.0% | |
| ACGATATTCAAGGTAGTCTG+AGG | + | chr4.2:48003919-48003938 | None:intergenic | 40.0% | |
| ACTTCTCAACTCAACAGTAC+TGG | - | chr4.2:48003446-48003465 | MS.gene89977:intron | 40.0% | |
| AGAAGAGACTCCTGCTAAAA+AGG | - | chr4.2:48005170-48005189 | MS.gene89977:intron | 40.0% | |
| ATGTAAGGTGATGAGTGTGA+TGG | - | chr4.2:48003409-48003428 | MS.gene89977:intron | 40.0% | |
| ATTCAAGGTAGTCTGAGGAA+AGG | + | chr4.2:48003914-48003933 | None:intergenic | 40.0% | |
| CAAATGAGACCTTTGTGTCA+TGG | - | chr4.2:48004126-48004145 | MS.gene89977:intron | 40.0% | |
| CACACTCATCACCTTACATA+CGG | + | chr4.2:48003408-48003427 | None:intergenic | 40.0% | |
| CTTCTCAACTCAACAGTACT+GGG | - | chr4.2:48003447-48003466 | MS.gene89977:intron | 40.0% | |
| GATCCAGATGATGAATGTAC+GGG | - | chr4.2:48003675-48003694 | MS.gene89977:intron | 40.0% | |
| GGTCTCATTTGTTTCCAACT+AGG | + | chr4.2:48004117-48004136 | None:intergenic | 40.0% | |
| GTATCTTTCACACTCCTGAT+TGG | - | chr4.2:48004014-48004033 | MS.gene89977:CDS | 40.0% | |
| GTATTCTGCACAAACTACAC+TGG | - | chr4.2:48005248-48005267 | MS.gene89977:intron | 40.0% | |
| GTTTGTGCCTTCATGATACA+TGG | - | chr4.2:48005780-48005799 | MS.gene89977:intron | 40.0% | |
| TATCCCGTACATTCATCATC+TGG | + | chr4.2:48003681-48003700 | None:intergenic | 40.0% | |
| TCAGACTCTGATTCTTCTTC+AGG | + | chr4.2:48004809-48004828 | None:intergenic | 40.0% | |
| TCCATCAAAGGATCAAGTTC+AGG | + | chr4.2:48004636-48004655 | None:intergenic | 40.0% | |
| TGATTGAGGCGAGAAAAACA+GGG | + | chr4.2:48003294-48003313 | None:intergenic | 40.0% | |
| TGTAAGGTGATGAGTGTGAT+GGG | - | chr4.2:48003410-48003429 | MS.gene89977:intron | 40.0% | |
| ! | ACTTGTTAGAAATGGGACTC+TGG | + | chr4.2:48006036-48006055 | None:intergenic | 40.0% |
| ! | ATACGGGTTTTTGTAAGACC+CGG | + | chr4.2:48003391-48003410 | None:intergenic | 40.0% |
| ! | CCTTGAATATCGTTCTAGAC+GGG | - | chr4.2:48003926-48003945 | MS.gene89977:intron | 40.0% |
| ! | CGGTTTTTAACACATTGGTC+TGG | - | chr4.2:48004343-48004362 | MS.gene89977:intron | 40.0% |
| ! | CTTGAATATCGTTCTAGACG+GGG | - | chr4.2:48003927-48003946 | MS.gene89977:intron | 40.0% |
| ! | GTTTTTCCACCCTTCTTCAT+AGG | + | chr4.2:48005992-48006011 | None:intergenic | 40.0% |
| ! | TTAGCTTTCTTGGTAGGAAC+GGG | + | chr4.2:48005353-48005372 | None:intergenic | 40.0% |
| !! | CGTGTATATAAATGGTGGGT+GGG | - | chr4.2:48003477-48003496 | MS.gene89977:intron | 40.0% |
| !! | GGTTTGAATTTTAGGTGTCG+AGG | - | chr4.2:48003626-48003645 | MS.gene89977:intron | 40.0% |
| !! | GTTATCTTTAGGTTGCACTC+GGG | - | chr4.2:48003797-48003816 | MS.gene89977:intron | 40.0% |
| !! | TTATCTTTAGGTTGCACTCG+GGG | - | chr4.2:48003798-48003817 | MS.gene89977:intron | 40.0% |
| !!! | GGCATTTTAGAGTGATACTG+AGG | - | chr4.2:48005107-48005126 | MS.gene89977:intron | 40.0% |
| CATTCAAACAGAGAATGGCG+TGG | + | chr4.2:48005841-48005860 | None:intergenic | 45.0% | |
| GATGATGACTCTGACAGTTC+TGG | - | chr4.2:48004514-48004533 | MS.gene89977:CDS | 45.0% | |
| GTGACGGTGACATAAACACT+TGG | + | chr4.2:48005612-48005631 | None:intergenic | 45.0% | |
| GTGATTGAGGCGAGAAAAAC+AGG | + | chr4.2:48003295-48003314 | None:intergenic | 45.0% | |
| TATCTACCACGGTCCATCAA+AGG | + | chr4.2:48004648-48004667 | None:intergenic | 45.0% | |
| TCTTCTTCACTCTCACTAGC+AGG | + | chr4.2:48005156-48005175 | None:intergenic | 45.0% | |
| TTGTTGACCAGATTTGGAGG+TGG | + | chr4.2:48006167-48006186 | None:intergenic | 45.0% | |
| ! | CCCGTCTAGAACGATATTCA+AGG | + | chr4.2:48003929-48003948 | None:intergenic | 45.0% |
| ! | GAACGACCAATGGAGTTTTG+GGG | - | chr4.2:48003151-48003170 | MS.gene89977:CDS | 45.0% |
| ! | GATTCTTCTTCAGGTTCAGC+AGG | + | chr4.2:48004800-48004819 | None:intergenic | 45.0% |
| ! | GCGTGTATATAAATGGTGGG+TGG | - | chr4.2:48003476-48003495 | MS.gene89977:intron | 45.0% |
| ! | GGAACGACCAATGGAGTTTT+GGG | - | chr4.2:48003150-48003169 | MS.gene89977:CDS | 45.0% |
| ! | TGGAACGACCAATGGAGTTT+TGG | - | chr4.2:48003149-48003168 | MS.gene89977:CDS | 45.0% |
| !! | GACGCAAGTGTCCATTTTTC+TGG | - | chr4.2:48003976-48003995 | MS.gene89977:CDS | 45.0% |
| !! | GCTTTGAAGGCTGCAAATTC+TGG | - | chr4.2:48004770-48004789 | MS.gene89977:intron | 45.0% |
| AACTCCCCACCCTATGAAGA+AGG | - | chr4.2:48005979-48005998 | MS.gene89977:intron | 50.0% | |
| ACTCCCCACCCTATGAAGAA+GGG | - | chr4.2:48005980-48005999 | MS.gene89977:intron | 50.0% | |
| CGAGGTTAAGGCTGGACAAT+CGG | - | chr4.2:48003644-48003663 | MS.gene89977:intron | 50.0% | |
| TCCACCCTTCTTCATAGGGT+GGG | + | chr4.2:48005987-48006006 | None:intergenic | 50.0% | |
| TGGTTCTTTGCAGGACTCTG+AGG | + | chr4.2:48006016-48006035 | None:intergenic | 50.0% | |
| TTCCACCCTTCTTCATAGGG+TGG | + | chr4.2:48005988-48006007 | None:intergenic | 50.0% | |
| ! | CGGCTGGTTAAAGGTTCAAC+TGG | - | chr4.2:48004305-48004324 | MS.gene89977:intron | 50.0% |
| ! | CTTGATCCTTTGATGGACCG+TGG | - | chr4.2:48004639-48004658 | MS.gene89977:intron | 50.0% |
| !! | ATGGGACTCTGGTTCTTTGC+AGG | + | chr4.2:48006025-48006044 | None:intergenic | 50.0% |
| !! | TTAGGTGTCGAGGTTAAGGC+TGG | - | chr4.2:48003636-48003655 | MS.gene89977:intron | 50.0% |
| !! | TTTAGGTTGCACTCGGGGAA+GGG | - | chr4.2:48003803-48003822 | MS.gene89977:intron | 50.0% |
| CCACCCTTCTTCATAGGGTG+GGG | + | chr4.2:48005986-48006005 | None:intergenic | 55.0% | |
| GTACGTGTTCCTTGTGGCAG+TGG | - | chr4.2:48004484-48004503 | MS.gene89977:intron | 55.0% | |
| TCATCACCACCACTGCCACA+AGG | + | chr4.2:48004496-48004515 | None:intergenic | 55.0% | |
| TGACCAGATTTGGAGGTGGC+AGG | + | chr4.2:48006163-48006182 | None:intergenic | 55.0% | |
| !! | CTTTAGGTTGCACTCGGGGA+AGG | - | chr4.2:48003802-48003821 | MS.gene89977:intron | 55.0% |
| AGATTTGGAGGTGGCAGGCC+TGG | + | chr4.2:48006158-48006177 | None:intergenic | 60.0% | |
| AGGCCTGCCACCTCCAAATC+TGG | - | chr4.2:48006157-48006176 | MS.gene89977:intron | 60.0% | |
| CCCCACCCTATGAAGAAGGG+TGG | - | chr4.2:48005983-48006002 | MS.gene89977:intron | 60.0% | |
| CGTGTTCCTTGTGGCAGTGG+TGG | - | chr4.2:48004487-48004506 | MS.gene89977:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 48003148 | 48006216 | 48003148 | ID=MS.gene89977 |
| chr4.2 | mRNA | 48003148 | 48006216 | 48003148 | ID=MS.gene89977.t1;Parent=MS.gene89977 |
| chr4.2 | exon | 48006192 | 48006216 | 48006192 | ID=MS.gene89977.t1.exon1;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48006192 | 48006216 | 48006192 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48005648 | 48005724 | 48005648 | ID=MS.gene89977.t1.exon2;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48005648 | 48005724 | 48005648 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48005351 | 48005556 | 48005351 | ID=MS.gene89977.t1.exon3;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48005351 | 48005556 | 48005351 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48004829 | 48004860 | 48004829 | ID=MS.gene89977.t1.exon4;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48004829 | 48004860 | 48004829 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48004704 | 48004739 | 48004704 | ID=MS.gene89977.t1.exon5;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48004704 | 48004739 | 48004704 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48004502 | 48004599 | 48004502 | ID=MS.gene89977.t1.exon6;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48004502 | 48004599 | 48004502 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48004173 | 48004247 | 48004173 | ID=MS.gene89977.t1.exon7;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48004173 | 48004247 | 48004173 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48003969 | 48004065 | 48003969 | ID=MS.gene89977.t1.exon8;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48003969 | 48004065 | 48003969 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48003311 | 48003410 | 48003311 | ID=MS.gene89977.t1.exon9;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48003311 | 48003410 | 48003311 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| chr4.2 | exon | 48003148 | 48003205 | 48003148 | ID=MS.gene89977.t1.exon10;Parent=MS.gene89977.t1 |
| chr4.2 | CDS | 48003148 | 48003205 | 48003148 | ID=cds.MS.gene89977.t1;Parent=MS.gene89977.t1 |
| Gene Sequence |
| Protein sequence |
