AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89982.t1 MTR_4g055310 98.082 417 8 0 1 417 1 417 0.0 852
MS.gene89982.t1 MTR_2g084875 81.455 426 62 6 1 411 1 424 0.0 684
MS.gene89982.t1 MTR_4g132250 59.780 363 142 2 44 406 32 390 4.20e-150 431
MS.gene89982.t1 MTR_2g088130 64.052 306 108 1 103 408 71 374 7.23e-146 419
MS.gene89982.t1 MTR_4g061070 65.359 306 101 2 103 408 73 373 1.48e-140 406
MS.gene89982.t1 MTR_2g088130 66.304 276 91 1 133 408 51 324 9.94e-133 384
MS.gene89982.t1 MTR_2g088130 63.359 262 94 1 103 364 71 330 8.34e-121 354
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89982.t1 AT1G08250 82.058 379 49 5 46 407 26 402 0.0 604
MS.gene89982.t1 AT2G27820 84.298 363 48 3 55 408 46 408 0.0 598
MS.gene89982.t1 AT3G44720 74.495 396 90 6 29 415 28 421 0.0 571
MS.gene89982.t1 AT5G22630 76.982 391 74 5 31 411 34 418 0.0 566
MS.gene89982.t1 AT1G11790 63.107 309 112 1 100 408 85 391 1.95e-145 419
MS.gene89982.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene89982.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene89982.t1 AT3G07630 64.024 328 111 2 81 408 59 379 1.51e-140 406
MS.gene89982.t1 AT1G11790 61.382 246 93 1 100 345 85 328 7.13e-108 322

Find 125 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAACCGTGTCACGTTATT+TGG 0.106188 4.2:+48075180 None:intergenic
TACATCTTTCTTAAGAGTTT+TGG 0.174536 4.2:-48074863 MS.gene89982:CDS
ACGATCGGTTCTTGGAATTA+TGG 0.194377 4.2:+48075140 None:intergenic
CACTGCCTCCTTGCACTTCC+CGG 0.286647 4.2:-48075435 MS.gene89982:CDS
TCCGCATTTAACGCTTATTC+TGG 0.298276 4.2:+48075953 None:intergenic
CGATCGGTTCTTGGAATTAT+GGG 0.310255 4.2:+48075141 None:intergenic
AGGCTTCCATGGCTGAGGTT+AGG 0.315985 4.2:-48074918 MS.gene89982:CDS
GCACGCGCTGCAGAGCTTTA+CGG 0.323478 4.2:-48075237 MS.gene89982:CDS
CCTTCTTCTACTTTCTCATA+GGG 0.354481 4.2:-48074808 None:intergenic
GGCTTCCATGGCTGAGGTTA+GGG 0.363263 4.2:-48074917 MS.gene89982:CDS
AGCTTTACCGGCAGCGGCTT+CGG 0.370119 4.2:+48075644 None:intergenic
GGTGGTGACATGGTCGTTTC+CGG 0.373076 4.2:+48075827 None:intergenic
TCCTTCTTCTACTTTCTCAT+AGG 0.375639 4.2:-48074809 None:intergenic
TTGAAAGGACGATCGGTTCT+TGG 0.387085 4.2:+48075132 None:intergenic
GATCGGTTACGGCGGCGTTA+TGG 0.389638 4.2:+48075796 None:intergenic
GCAAGGAGGCAGTGGTGGAC+GGG 0.396627 4.2:+48075444 None:intergenic
CGTGACACGGTTTGTTATGT+TGG 0.402654 4.2:-48075172 MS.gene89982:CDS
CACGGCATGGCTTCGCTGTT+CGG 0.402841 4.2:+48075618 None:intergenic
ATTCCCTTACCTATCTGAAC+CGG 0.403460 4.2:-48076013 MS.gene89982:CDS
GTGATTTATTGTTTCCGATT+GGG 0.409384 4.2:+48075763 None:intergenic
CATTTAACGCTTATTCTGGT+TGG 0.416317 4.2:+48075957 None:intergenic
GCTGTTCGGATAAGCTTTAC+CGG 0.419640 4.2:+48075632 None:intergenic
GTCGCATACCAAGGAGTTCC+CGG 0.419874 4.2:-48075675 MS.gene89982:CDS
CCAATCGGCTCGGTTTGAAC+CGG 0.421888 4.2:+48075911 None:intergenic
AAGCTCTGCAGCGCGTGCAC+TGG 0.428583 4.2:+48075242 None:intergenic
GAAGGAGGAGGTCGTAGTTT+CGG 0.440722 4.2:+48075502 None:intergenic
GTTCAGATAGGTAAGGGAAT+TGG 0.447287 4.2:+48076016 None:intergenic
GGGTTCGCCCCTCGTTAAAC+CGG 0.447861 4.2:-48075992 MS.gene89982:CDS
AGCGCATGAGCTTTGCCAAT+CGG 0.449914 4.2:+48075896 None:intergenic
CGTGCATCGGTGCCGGAGAT+AGG 0.451609 4.2:+48075712 None:intergenic
GGCGGCGTTATGGCCGTTGA+CGG 0.463263 4.2:+48075806 None:intergenic
AGTGATTTATTGTTTCCGAT+TGG 0.474485 4.2:+48075762 None:intergenic
ATGAGCTTTGCCAATCGGCT+CGG 0.474923 4.2:+48075901 None:intergenic
TGCAAGGAGGCAGTGGTGGA+CGG 0.478596 4.2:+48075443 None:intergenic
CAAGGAGGCAGTGGTGGACG+GGG 0.479493 4.2:+48075445 None:intergenic
AGCTGATCGCGCAGTTCTAC+CGG 0.480649 4.2:-48075553 MS.gene89982:CDS
GCTTAACTAAGATTGAATCT+AGG 0.481937 4.2:-48075029 MS.gene89982:CDS
GATCTTCAGCTCGTCCCAAT+CGG 0.482742 4.2:-48075777 MS.gene89982:CDS
TCATCATCCACAACTCGAAT+CGG 0.483438 4.2:+48074991 None:intergenic
TCGGTGATAGTAAGTGGCTT+TGG 0.489232 4.2:+48075735 None:intergenic
TGGTTGGAGCTGAACCGATC+CGG 0.493435 4.2:+48075973 None:intergenic
GTGGAGCCGTGCATCGGTGC+CGG 0.495353 4.2:+48075705 None:intergenic
CGGATAAGCTTTACCGGCAG+CGG 0.495619 4.2:+48075638 None:intergenic
CGATGTGGAGGCGGTGGCGA+AGG 0.497613 4.2:+48075484 None:intergenic
GGAGGCGGTGGCGAAGGAGG+AGG 0.501810 4.2:+48075490 None:intergenic
GGGGCGAACCCGGTTCAGAT+AGG 0.502714 4.2:+48076004 None:intergenic
TGCAGCGCGTGCACTGGCGA+TGG 0.502961 4.2:+48075248 None:intergenic
GGATTAAATATCTTAGCTGA+TGG 0.510750 4.2:-48075216 MS.gene89982:CDS
ACATGGTCGTTTCCGGTGAC+CGG 0.513789 4.2:+48075834 None:intergenic
TGTGGAGGCGGTGGCGAAGG+AGG 0.517898 4.2:+48075487 None:intergenic
TACTATCACCGACCTATCTC+CGG 0.522266 4.2:-48075724 MS.gene89982:CDS
CGGGAAGTGCAAGGAGGCAG+TGG 0.522606 4.2:+48075436 None:intergenic
CGCCCCTCGTTAAACCGGAT+CGG 0.523600 4.2:-48075987 MS.gene89982:CDS
ATCGGCTCGGTTTGAACCGG+TGG 0.524999 4.2:+48075914 None:intergenic
AGCGGCTTCGGAGTATGCAC+CGG 0.526783 4.2:+48075656 None:intergenic
TGGCCGTCCGATTCGAGTTG+TGG 0.527016 4.2:-48074998 MS.gene89982:CDS
CCCTATGAGAAAGTAGAAGA+AGG 0.528524 4.2:+48074808 None:intergenic
ATAAGCGTTAAATGCGGATA+CGG 0.530595 4.2:-48075948 MS.gene89982:CDS
CTCCGACGATGTGGAGGCGG+TGG 0.532325 4.2:+48075478 None:intergenic
CTTCTCCGACGATGTGGAGG+CGG 0.532954 4.2:+48075475 None:intergenic
GACCATGTCACCACCGTCAA+CGG 0.533606 4.2:-48075819 MS.gene89982:CDS
GATTGGGACGAGCTGAAGAT+CGG 0.534875 4.2:+48075779 None:intergenic
CGGCCTCAACGTAGCGCGTG+AGG 0.535998 4.2:-48075334 MS.gene89982:CDS
GCATACTCCGAAGCCGCTGC+CGG 0.537170 4.2:-48075651 MS.gene89982:CDS
TCGCATTGAGCTAATGCTTG+TGG 0.545583 4.2:+48075375 None:intergenic
GACGAGCTGAAGATCGGTTA+CGG 0.546171 4.2:+48075785 None:intergenic
TTCTTACTCCGGGAAGTGCA+AGG 0.554239 4.2:+48075427 None:intergenic
CCGGTTCAAACCGAGCCGAT+TGG 0.554522 4.2:-48075911 MS.gene89982:CDS
CGAGATGAATCTCCGGTCAC+CGG 0.555384 4.2:-48075846 MS.gene89982:CDS
AAAGTAGAAGAAGGACTCCA+AGG 0.559184 4.2:+48074817 None:intergenic
CGGAGGGTGGAGCCGTGCAT+CGG 0.562815 4.2:+48075699 None:intergenic
TGGCGATGGCAGCAGTGTCA+CGG 0.562951 4.2:+48075262 None:intergenic
TTCCCTTACCTATCTGAACC+GGG 0.566128 4.2:-48076012 MS.gene89982:CDS
TTCACAGCGAGATGAATCTC+CGG 0.567455 4.2:-48075853 MS.gene89982:CDS
AGTATGCACCGGGAACTCCT+TGG 0.568238 4.2:+48075667 None:intergenic
GATAGGTCGGTGATAGTAAG+TGG 0.571076 4.2:+48075729 None:intergenic
GAAGTGCAAGGAGGCAGTGG+TGG 0.571440 4.2:+48075439 None:intergenic
TTGGTATGCGACACGGAGGG+TGG 0.572771 4.2:+48075686 None:intergenic
CGCCACCGCCTCCACATCGT+CGG 0.573031 4.2:-48075480 MS.gene89982:CDS
CTTCTTCTACTTTCTCATAG+GGG 0.577391 4.2:-48074807 None:intergenic
GGTTTAACGAGGGGCGAACC+CGG 0.579775 4.2:+48075994 None:intergenic
GGCACAAAATGCACTTGCTG+AGG 0.582924 4.2:-48074896 MS.gene89982:CDS
GGCCGTTGACGGTGGTGACA+TGG 0.583052 4.2:+48075817 None:intergenic
TTGTGCCCTAACCTCAGCCA+TGG 0.583878 4.2:+48074912 None:intergenic
CTACCGGTTGAAAACTCCCT+CGG 0.584065 4.2:-48075537 MS.gene89982:CDS
GCGGCTTCGGAGTATGCACC+GGG 0.586817 4.2:+48075657 None:intergenic
GAACCCGGTTCAGATAGGTA+AGG 0.591113 4.2:+48076009 None:intergenic
CTATCTCCGGCACCGATGCA+CGG 0.591172 4.2:-48075711 MS.gene89982:CDS
GGCGTTATGGCCGTTGACGG+TGG 0.595595 4.2:+48075809 None:intergenic
CATGCCGTGTGATCAATTCG+AGG 0.597736 4.2:-48075604 MS.gene89982:CDS
AACCCGGTTCAGATAGGTAA+GGG 0.606680 4.2:+48076010 None:intergenic
GAACTTCTCCGACGATGTGG+AGG 0.607022 4.2:+48075472 None:intergenic
CGGCCTCACGCGCTACGTTG+AGG 0.609595 4.2:+48075331 None:intergenic
GGAGGAGGTCGTAGTTTCGG+TGG 0.612462 4.2:+48075505 None:intergenic
GTTGTGGATGATGAAAATGA+TGG 0.612547 4.2:-48074982 MS.gene89982:CDS
CTCGAATTGATCACACGGCA+TGG 0.616382 4.2:+48075605 None:intergenic
CTCCAAGGTGTCATATCCAT+AGG 0.621384 4.2:+48074832 None:intergenic
GTTGAACTTCTCCGACGATG+TGG 0.621502 4.2:+48075469 None:intergenic
CATCGGTGCCGGAGATAGGT+CGG 0.624382 4.2:+48075716 None:intergenic
GAACCGATCCGGTTTAACGA+GGG 0.630908 4.2:+48075984 None:intergenic
GAGGCCGTTGACGATACAGC+AGG 0.632801 4.2:-48075315 MS.gene89982:CDS
ATCCTATGGATATGACACCT+TGG 0.634008 4.2:-48074834 MS.gene89982:CDS
GGCACCTGCTGTATCGTCAA+CGG 0.635572 4.2:+48075311 None:intergenic
ACCCTCCGTGTCGCATACCA+AGG 0.636772 4.2:-48075684 MS.gene89982:CDS
GAAAACACGCTAACAAAGCT+CGG 0.640593 4.2:-48075354 MS.gene89982:CDS
AACCGATCCGGTTTAACGAG+GGG 0.645716 4.2:+48075985 None:intergenic
TGACGATACAGCAGGTGCCG+CGG 0.648138 4.2:-48075307 MS.gene89982:CDS
TGAACCGATCCGGTTTAACG+AGG 0.652677 4.2:+48075983 None:intergenic
GAACTCCTTGGTATGCGACA+CGG 0.654132 4.2:+48075679 None:intergenic
CGAATCGGACGGCCACGATG+AGG 0.656619 4.2:+48075006 None:intergenic
TAGGTAAGGGAATTGGAAGA+CGG 0.657172 4.2:+48076023 None:intergenic
TTCGGTGGATAGATCCTCCG+AGG 0.664481 4.2:+48075520 None:intergenic
CATCCACAACTCGAATCGGA+CGG 0.675677 4.2:+48074995 None:intergenic
ATGATCCAAATAACGTGACA+CGG 0.678576 4.2:-48075185 MS.gene89982:CDS
ACCAGAATAAGCGTTAAATG+CGG 0.694484 4.2:-48075954 MS.gene89982:CDS
CTCCTTGGTATGCGACACGG+AGG 0.695713 4.2:+48075682 None:intergenic
TCGGTGGATAGATCCTCCGA+GGG 0.696217 4.2:+48075521 None:intergenic
TCCTTGGTATGCGACACGGA+GGG 0.699394 4.2:+48075683 None:intergenic
CCGGTTGAAAACTCCCTCGG+AGG 0.702573 4.2:-48075534 MS.gene89982:CDS
GCTACCTCGAATTGATCACA+CGG 0.710462 4.2:+48075600 None:intergenic
CGATGGCAGCAGTGTCACGG+AGG 0.716743 4.2:+48075265 None:intergenic
GAGCTGAAGATCGGTTACGG+CGG 0.717318 4.2:+48075788 None:intergenic
ATTTGCAGCAATAAACTCCG+CGG 0.720755 4.2:+48075290 None:intergenic
TTACTCCGGGAAGTGCAAGG+AGG 0.730467 4.2:+48075430 None:intergenic
ATTGAATCTAGGCCTCATCG+TGG 0.760383 4.2:-48075018 MS.gene89982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATGTTTTATATTGATTTTG+AGG - chr4.2:48075913-48075932 MS.gene89982:CDS 15.0%
!! ACATCTTTCTTAAGAGTTTT+GGG - chr4.2:48075989-48076008 MS.gene89982:CDS 25.0%
!! TACATCTTTCTTAAGAGTTT+TGG - chr4.2:48075988-48076007 MS.gene89982:CDS 25.0%
!!! AAAACAATGCTTGTTTTGAA+AGG + chr4.2:48075737-48075756 None:intergenic 25.0%
!!! ATTGTTTTTGCTCATGATAA+AGG - chr4.2:48075749-48075768 MS.gene89982:CDS 25.0%
AGTGATTTATTGTTTCCGAT+TGG + chr4.2:48075092-48075111 None:intergenic 30.0%
GCTTAACTAAGATTGAATCT+AGG - chr4.2:48075822-48075841 MS.gene89982:CDS 30.0%
GGATTAAATATCTTAGCTGA+TGG - chr4.2:48075635-48075654 MS.gene89982:CDS 30.0%
GTGATTTATTGTTTCCGATT+GGG + chr4.2:48075091-48075110 None:intergenic 30.0%
! AGATATTCTTTTCTTACTCC+GGG + chr4.2:48075437-48075456 None:intergenic 30.0%
! CATCTTTCTTAAGAGTTTTG+GGG - chr4.2:48075990-48076009 MS.gene89982:CDS 30.0%
! GAGATATTCTTTTCTTACTC+CGG + chr4.2:48075438-48075457 None:intergenic 30.0%
ACCAGAATAAGCGTTAAATG+CGG - chr4.2:48074897-48074916 MS.gene89982:CDS 35.0%
ATAAGCGTTAAATGCGGATA+CGG - chr4.2:48074903-48074922 MS.gene89982:CDS 35.0%
ATGATCCAAATAACGTGACA+CGG - chr4.2:48075666-48075685 MS.gene89982:CDS 35.0%
CATTTAACGCTTATTCTGGT+TGG + chr4.2:48074897-48074916 None:intergenic 35.0%
GTTGTGGATGATGAAAATGA+TGG - chr4.2:48075869-48075888 MS.gene89982:CDS 35.0%
! ATTCGAGGTAGCTTTTCAAT+CGG - chr4.2:48075262-48075281 MS.gene89982:CDS 35.0%
!! TGCTTTCAGCTTTTGCTTTT+AGG - chr4.2:48075792-48075811 MS.gene89982:CDS 35.0%
!!! TATTGATTTTGAGGCTTCCA+TGG - chr4.2:48075922-48075941 MS.gene89982:CDS 35.0%
AAAGTAGAAGAAGGACTCCA+AGG + chr4.2:48076037-48076056 None:intergenic 40.0%
ACAAACCGTGTCACGTTATT+TGG + chr4.2:48075674-48075693 None:intergenic 40.0%
ATCCTATGGATATGACACCT+TGG - chr4.2:48076017-48076036 MS.gene89982:CDS 40.0%
ATTCCCTTACCTATCTGAAC+CGG - chr4.2:48074838-48074857 MS.gene89982:CDS 40.0%
ATTTGCAGCAATAAACTCCG+CGG + chr4.2:48075564-48075583 None:intergenic 40.0%
GAAAACACGCTAACAAAGCT+CGG - chr4.2:48075497-48075516 MS.gene89982:CDS 40.0%
GTTCAGATAGGTAAGGGAAT+TGG + chr4.2:48074838-48074857 None:intergenic 40.0%
TAGGTAAGGGAATTGGAAGA+CGG + chr4.2:48074831-48074850 None:intergenic 40.0%
TCATCATCCACAACTCGAAT+CGG + chr4.2:48075863-48075882 None:intergenic 40.0%
TCCGCATTTAACGCTTATTC+TGG + chr4.2:48074901-48074920 None:intergenic 40.0%
! ACGATCGGTTCTTGGAATTA+TGG + chr4.2:48075714-48075733 None:intergenic 40.0%
! CGATCGGTTCTTGGAATTAT+GGG + chr4.2:48075713-48075732 None:intergenic 40.0%
! CTTTTCAATCGGTAGAACTC+TGG - chr4.2:48075273-48075292 MS.gene89982:CDS 40.0%
!!! AGTTTTGGGGAGTTATCCTA+TGG - chr4.2:48076003-48076022 MS.gene89982:CDS 40.0%
!!! GCTTGTTTTGAAAGGACGAT+CGG + chr4.2:48075729-48075748 None:intergenic 40.0%
!!! TACGGTTTTGAATTCTCCAC+CGG - chr4.2:48074921-48074940 MS.gene89982:CDS 40.0%
AACCCGGTTCAGATAGGTAA+GGG + chr4.2:48074844-48074863 None:intergenic 45.0%
ATTGAATCTAGGCCTCATCG+TGG - chr4.2:48075833-48075852 MS.gene89982:CDS 45.0%
GATAGGTCGGTGATAGTAAG+TGG + chr4.2:48075125-48075144 None:intergenic 45.0%
GCTACCTCGAATTGATCACA+CGG + chr4.2:48075254-48075273 None:intergenic 45.0%
GCTGTTCGGATAAGCTTTAC+CGG + chr4.2:48075222-48075241 None:intergenic 45.0%
TACTATCACCGACCTATCTC+CGG - chr4.2:48075127-48075146 MS.gene89982:CDS 45.0%
TCGCATTGAGCTAATGCTTG+TGG + chr4.2:48075479-48075498 None:intergenic 45.0%
TCGGTGATAGTAAGTGGCTT+TGG + chr4.2:48075119-48075138 None:intergenic 45.0%
TTCACAGCGAGATGAATCTC+CGG - chr4.2:48074998-48075017 MS.gene89982:CDS 45.0%
TTCCCTTACCTATCTGAACC+GGG - chr4.2:48074839-48074858 MS.gene89982:CDS 45.0%
! CTCCAAGGTGTCATATCCAT+AGG + chr4.2:48076022-48076041 None:intergenic 45.0%
! TTGAAAGGACGATCGGTTCT+TGG + chr4.2:48075722-48075741 None:intergenic 45.0%
!! CGTGACACGGTTTGTTATGT+TGG - chr4.2:48075679-48075698 MS.gene89982:CDS 45.0%
AACCGATCCGGTTTAACGAG+GGG + chr4.2:48074869-48074888 None:intergenic 50.0%
AGCGCATGAGCTTTGCCAAT+CGG + chr4.2:48074958-48074977 None:intergenic 50.0%
ATGAGCTTTGCCAATCGGCT+CGG + chr4.2:48074953-48074972 None:intergenic 50.0%
CATCCACAACTCGAATCGGA+CGG + chr4.2:48075859-48075878 None:intergenic 50.0%
CATGCCGTGTGATCAATTCG+AGG - chr4.2:48075247-48075266 MS.gene89982:CDS 50.0%
CTCGAATTGATCACACGGCA+TGG + chr4.2:48075249-48075268 None:intergenic 50.0%
GAACCCGGTTCAGATAGGTA+AGG + chr4.2:48074845-48074864 None:intergenic 50.0%
GAACCGATCCGGTTTAACGA+GGG + chr4.2:48074870-48074889 None:intergenic 50.0%
GAACTCCTTGGTATGCGACA+CGG + chr4.2:48075175-48075194 None:intergenic 50.0%
GAAGGAGGAGGTCGTAGTTT+CGG + chr4.2:48075352-48075371 None:intergenic 50.0%
GACGAGCTGAAGATCGGTTA+CGG + chr4.2:48075069-48075088 None:intergenic 50.0%
GATCTTCAGCTCGTCCCAAT+CGG - chr4.2:48075074-48075093 MS.gene89982:CDS 50.0%
GATTGGGACGAGCTGAAGAT+CGG + chr4.2:48075075-48075094 None:intergenic 50.0%
GTTGAACTTCTCCGACGATG+TGG + chr4.2:48075385-48075404 None:intergenic 50.0%
TGAACCGATCCGGTTTAACG+AGG + chr4.2:48074871-48074890 None:intergenic 50.0%
! CTACCGGTTGAAAACTCCCT+CGG - chr4.2:48075314-48075333 MS.gene89982:CDS 50.0%
! GGCACAAAATGCACTTGCTG+AGG - chr4.2:48075955-48075974 MS.gene89982:CDS 50.0%
! TTCTTACTCCGGGAAGTGCA+AGG + chr4.2:48075427-48075446 None:intergenic 50.0%
!!! TTTTGAGGCTTCCATGGCTG+AGG - chr4.2:48075928-48075947 MS.gene89982:CDS 50.0%
ACATGGTCGTTTCCGGTGAC+CGG + chr4.2:48075020-48075039 None:intergenic 55.0%
AGCTGATCGCGCAGTTCTAC+CGG - chr4.2:48075298-48075317 MS.gene89982:CDS 55.0%
AGGCTTCCATGGCTGAGGTT+AGG - chr4.2:48075933-48075952 MS.gene89982:CDS 55.0%
AGTATGCACCGGGAACTCCT+TGG + chr4.2:48075187-48075206 None:intergenic 55.0%
CGAGATGAATCTCCGGTCAC+CGG - chr4.2:48075005-48075024 MS.gene89982:CDS 55.0%
CGGATAAGCTTTACCGGCAG+CGG + chr4.2:48075216-48075235 None:intergenic 55.0%
GAACTTCTCCGACGATGTGG+AGG + chr4.2:48075382-48075401 None:intergenic 55.0%
GACCATGTCACCACCGTCAA+CGG - chr4.2:48075032-48075051 MS.gene89982:CDS 55.0%
GAGCTGAAGATCGGTTACGG+CGG + chr4.2:48075066-48075085 None:intergenic 55.0%
GGCACCTGCTGTATCGTCAA+CGG + chr4.2:48075543-48075562 None:intergenic 55.0%
GGCTTCCATGGCTGAGGTTA+GGG - chr4.2:48075934-48075953 MS.gene89982:CDS 55.0%
GGTGGTGACATGGTCGTTTC+CGG + chr4.2:48075027-48075046 None:intergenic 55.0%
GTCGCATACCAAGGAGTTCC+CGG - chr4.2:48075176-48075195 MS.gene89982:CDS 55.0%
TCCTTGGTATGCGACACGGA+GGG + chr4.2:48075171-48075190 None:intergenic 55.0%
TCGGTGGATAGATCCTCCGA+GGG + chr4.2:48075333-48075352 None:intergenic 55.0%
TGGTTGGAGCTGAACCGATC+CGG + chr4.2:48074881-48074900 None:intergenic 55.0%
TTCGGTGGATAGATCCTCCG+AGG + chr4.2:48075334-48075353 None:intergenic 55.0%
TTGTGCCCTAACCTCAGCCA+TGG + chr4.2:48075942-48075961 None:intergenic 55.0%
! CCTCCGAGGGAGTTTTCAAC+CGG + chr4.2:48075320-48075339 None:intergenic 55.0%
! TTACTCCGGGAAGTGCAAGG+AGG + chr4.2:48075424-48075443 None:intergenic 55.0%
!! CCAATCGGCTCGGTTTGAAC+CGG + chr4.2:48074943-48074962 None:intergenic 55.0%
ACCCTCCGTGTCGCATACCA+AGG - chr4.2:48075167-48075186 MS.gene89982:CDS 60.0%
AGCGGCTTCGGAGTATGCAC+CGG + chr4.2:48075198-48075217 None:intergenic 60.0%
AGCTTTACCGGCAGCGGCTT+CGG + chr4.2:48075210-48075229 None:intergenic 60.0%
CACGGCATGGCTTCGCTGTT+CGG + chr4.2:48075236-48075255 None:intergenic 60.0%
CACTGCCTCCTTGCACTTCC+CGG - chr4.2:48075416-48075435 MS.gene89982:CDS 60.0%
CCGGTTCAAACCGAGCCGAT+TGG - chr4.2:48074940-48074959 MS.gene89982:CDS 60.0%
CCGGTTGAAAACTCCCTCGG+AGG - chr4.2:48075317-48075336 MS.gene89982:CDS 60.0%
CGCCCCTCGTTAAACCGGAT+CGG - chr4.2:48074864-48074883 MS.gene89982:CDS 60.0%
CTCCTTGGTATGCGACACGG+AGG + chr4.2:48075172-48075191 None:intergenic 60.0%
CTTCTCCGACGATGTGGAGG+CGG + chr4.2:48075379-48075398 None:intergenic 60.0%
GAAGTGCAAGGAGGCAGTGG+TGG + chr4.2:48075415-48075434 None:intergenic 60.0%
GAGGCCGTTGACGATACAGC+AGG - chr4.2:48075536-48075555 MS.gene89982:CDS 60.0%
GATCGGTTACGGCGGCGTTA+TGG + chr4.2:48075058-48075077 None:intergenic 60.0%
GCACGCGCTGCAGAGCTTTA+CGG - chr4.2:48075614-48075633 MS.gene89982:CDS 60.0%
GGAGGAGGTCGTAGTTTCGG+TGG + chr4.2:48075349-48075368 None:intergenic 60.0%
GGGTTCGCCCCTCGTTAAAC+CGG - chr4.2:48074859-48074878 MS.gene89982:CDS 60.0%
GGTTTAACGAGGGGCGAACC+CGG + chr4.2:48074860-48074879 None:intergenic 60.0%
TGGCGATGGCAGCAGTGTCA+CGG + chr4.2:48075592-48075611 None:intergenic 60.0%
TTGGTATGCGACACGGAGGG+TGG + chr4.2:48075168-48075187 None:intergenic 60.0%
! TGACGATACAGCAGGTGCCG+CGG - chr4.2:48075544-48075563 MS.gene89982:CDS 60.0%
! TGCAAGGAGGCAGTGGTGGA+CGG + chr4.2:48075411-48075430 None:intergenic 60.0%
!! ATCGGCTCGGTTTGAACCGG+TGG + chr4.2:48074940-48074959 None:intergenic 60.0%
!! CATCGGTGCCGGAGATAGGT+CGG + chr4.2:48075138-48075157 None:intergenic 60.0%
!! CTATCTCCGGCACCGATGCA+CGG - chr4.2:48075140-48075159 MS.gene89982:CDS 60.0%
!! TGGCCGTCCGATTCGAGTTG+TGG - chr4.2:48075853-48075872 MS.gene89982:CDS 60.0%
AAGCTCTGCAGCGCGTGCAC+TGG + chr4.2:48075612-48075631 None:intergenic 65.0%
CGAATCGGACGGCCACGATG+AGG + chr4.2:48075848-48075867 None:intergenic 65.0%
CGATGGCAGCAGTGTCACGG+AGG + chr4.2:48075589-48075608 None:intergenic 65.0%
GCATACTCCGAAGCCGCTGC+CGG - chr4.2:48075200-48075219 MS.gene89982:CDS 65.0%
GCGGCTTCGGAGTATGCACC+GGG + chr4.2:48075197-48075216 None:intergenic 65.0%
GGCCGTTGACGGTGGTGACA+TGG + chr4.2:48075037-48075056 None:intergenic 65.0%
GGCGGCGTTATGGCCGTTGA+CGG + chr4.2:48075048-48075067 None:intergenic 65.0%
GGCGTTATGGCCGTTGACGG+TGG + chr4.2:48075045-48075064 None:intergenic 65.0%
GGGGCGAACCCGGTTCAGAT+AGG + chr4.2:48074850-48074869 None:intergenic 65.0%
! CGGGAAGTGCAAGGAGGCAG+TGG + chr4.2:48075418-48075437 None:intergenic 65.0%
!! CAAGGAGGCAGTGGTGGACG+GGG + chr4.2:48075409-48075428 None:intergenic 65.0%
!! CGTGCATCGGTGCCGGAGAT+AGG + chr4.2:48075142-48075161 None:intergenic 65.0%
!! GCAAGGAGGCAGTGGTGGAC+GGG + chr4.2:48075410-48075429 None:intergenic 65.0%
CGATGTGGAGGCGGTGGCGA+AGG + chr4.2:48075370-48075389 None:intergenic 70.0%
CGCCACCGCCTCCACATCGT+CGG - chr4.2:48075371-48075390 MS.gene89982:CDS 70.0%
CGGAGGGTGGAGCCGTGCAT+CGG + chr4.2:48075155-48075174 None:intergenic 70.0%
CGGCCTCAACGTAGCGCGTG+AGG - chr4.2:48075517-48075536 MS.gene89982:CDS 70.0%
CGGCCTCACGCGCTACGTTG+AGG + chr4.2:48075523-48075542 None:intergenic 70.0%
CTCCGACGATGTGGAGGCGG+TGG + chr4.2:48075376-48075395 None:intergenic 70.0%
TGTGGAGGCGGTGGCGAAGG+AGG + chr4.2:48075367-48075386 None:intergenic 70.0%
! GTGGAGCCGTGCATCGGTGC+CGG + chr4.2:48075149-48075168 None:intergenic 70.0%
! TGCAGCGCGTGCACTGGCGA+TGG + chr4.2:48075606-48075625 None:intergenic 70.0%
GGAGGCGGTGGCGAAGGAGG+AGG + chr4.2:48075364-48075383 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 48074810 48076063 48074810 ID=MS.gene89982
chr4.2 mRNA 48074810 48076063 48074810 ID=MS.gene89982.t1;Parent=MS.gene89982
chr4.2 exon 48074810 48076063 48074810 ID=MS.gene89982.t1.exon1;Parent=MS.gene89982.t1
chr4.2 CDS 48074810 48076063 48074810 ID=cds.MS.gene89982.t1;Parent=MS.gene89982.t1
Gene Sequence

>MS.gene89982

ATGAATGCTCTCACTACACCGTCTTCCAATTCCCTTACCTATCTGAACCGGGTTCGCCCCTCGTTAAACCGGATCGGTTCAGCTCCAACCAGAATAAGCGTTAAATGCGGATACGGTTTTGAATTCTCCACCGGTTCAAACCGAGCCGATTGGCAAAGCTCATGCGCTATTTTATCAAGCAAAGTAAATTCACAGCGAGATGAATCTCCGGTCACCGGAAACGACCATGTCACCACCGTCAACGGCCATAACGCCGCCGTAACCGATCTTCAGCTCGTCCCAATCGGAAACAATAAATCACTTCAACCAAAGCCACTTACTATCACCGACCTATCTCCGGCACCGATGCACGGCTCCACCCTCCGTGTCGCATACCAAGGAGTTCCCGGTGCATACTCCGAAGCCGCTGCCGGTAAAGCTTATCCGAACAGCGAAGCCATGCCGTGTGATCAATTCGAGGTAGCTTTTCAATCGGTAGAACTCTGGATAGCTGATCGCGCAGTTCTACCGGTTGAAAACTCCCTCGGAGGATCTATCCACCGAAACTACGACCTCCTCCTTCGCCACCGCCTCCACATCGTCGGAGAAGTTCAACTCCCCGTCCACCACTGCCTCCTTGCACTTCCCGGAGTAAGAAAAGAATATCTCACACGCGTGATTTCGCATCCACAAGCATTAGCTCAATGCGAAAACACGCTAACAAAGCTCGGCCTCAACGTAGCGCGTGAGGCCGTTGACGATACAGCAGGTGCCGCGGAGTTTATTGCTGCAAATAACCTCCGTGACACTGCTGCCATCGCCAGTGCACGCGCTGCAGAGCTTTACGGATTAAATATCTTAGCTGATGGAATACAAGATGATCCAAATAACGTGACACGGTTTGTTATGTTGGCAAGAGAACCCATAATTCCAAGAACCGATCGTCCTTTCAAAACAAGCATTGTTTTTGCTCATGATAAAGGAACTTCAGTGCTTTTCAAAGTGCTTTCAGCTTTTGCTTTTAGGAATATCAGCTTAACTAAGATTGAATCTAGGCCTCATCGTGGCCGTCCGATTCGAGTTGTGGATGATGAAAATGATGGAACAGCTAAACATTTTGAGTATATGTTTTATATTGATTTTGAGGCTTCCATGGCTGAGGTTAGGGCACAAAATGCACTTGCTGAGGTTCAAGAATTTACATCTTTCTTAAGAGTTTTGGGGAGTTATCCTATGGATATGACACCTTGGAGTCCTTCTTCTACTTTCTCATAG
Protein sequence

>MS.gene89982.t1

MNALTTPSSNSLTYLNRVRPSLNRIGSAPTRISVKCGYGFEFSTGSNRADWQSSCAILSSKVNSQRDESPVTGNDHVTTVNGHNAAVTDLQLVPIGNNKSLQPKPLTITDLSPAPMHGSTLRVAYQGVPGAYSEAAAGKAYPNSEAMPCDQFEVAFQSVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALAQCENTLTKLGLNVAREAVDDTAGAAEFIAANNLRDTAAIASARAAELYGLNILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRGRPIRVVDDENDGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSSTFS