Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90172.t1 | XP_003612880.1 | 98.9 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 1.30E-136 | 495.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90172.t1 | Q9FIQ5 | 66.5 | 269 | 90 | 0 | 1 | 269 | 1 | 269 | 1.7e-95 | 350.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90172.t1 | G7KDS1 | 98.9 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 9.5e-137 | 495.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene90172 | 0.815115 | 1.09E-51 | -1.69E-46 |
| MS.gene049660 | MS.gene90172 | 0.848001 | 8.09E-60 | -1.69E-46 |
| MS.gene05054 | MS.gene90172 | 0.838038 | 3.65E-57 | -1.69E-46 |
| MS.gene051648 | MS.gene90172 | 0.81613 | 6.48E-52 | -1.69E-46 |
| MS.gene051660 | MS.gene90172 | 0.825539 | 4.44E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene90172 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene060565 | MS.gene90172 | 0.805303 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90172.t1 | MTR_5g030070 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| MS.gene90172.t1 | MTR_8g066790 | 75.093 | 269 | 67 | 0 | 1 | 269 | 1 | 269 | 2.78e-151 | 423 |
| MS.gene90172.t1 | MTR_8g101600 | 50.373 | 268 | 133 | 0 | 1 | 268 | 1 | 268 | 8.19e-100 | 293 |
| MS.gene90172.t1 | MTR_4g061010 | 45.956 | 272 | 141 | 3 | 1 | 266 | 1 | 272 | 2.12e-78 | 239 |
| MS.gene90172.t1 | MTR_4g129670 | 45.318 | 267 | 142 | 3 | 1 | 264 | 1 | 266 | 3.84e-76 | 232 |
| MS.gene90172.t1 | MTR_1g095530 | 41.445 | 263 | 144 | 3 | 4 | 266 | 5 | 257 | 2.09e-66 | 208 |
| MS.gene90172.t1 | MTR_6g033335 | 41.016 | 256 | 141 | 3 | 4 | 259 | 5 | 250 | 2.27e-66 | 208 |
| MS.gene90172.t1 | MTR_4g112570 | 34.231 | 260 | 168 | 2 | 3 | 259 | 6 | 265 | 6.97e-54 | 176 |
| MS.gene90172.t1 | MTR_8g097280 | 31.984 | 247 | 159 | 4 | 1 | 244 | 3 | 243 | 7.28e-49 | 163 |
| MS.gene90172.t1 | MTR_2g056130 | 31.250 | 256 | 159 | 3 | 3 | 256 | 4 | 244 | 5.01e-44 | 150 |
| MS.gene90172.t1 | MTR_5g097460 | 28.458 | 253 | 155 | 6 | 5 | 252 | 50 | 281 | 1.38e-29 | 114 |
| MS.gene90172.t1 | MTR_8g097250 | 28.866 | 97 | 64 | 2 | 119 | 212 | 28 | 122 | 7.32e-12 | 61.6 |
| MS.gene90172.t1 | MTR_5g097450 | 30.233 | 129 | 66 | 4 | 118 | 241 | 84 | 193 | 1.23e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90172.t1 | AT5G46700 | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.13e-128 | 365 |
| MS.gene90172.t1 | AT2G19580 | 57.249 | 269 | 114 | 1 | 1 | 268 | 1 | 269 | 1.65e-100 | 295 |
| MS.gene90172.t1 | AT3G45600 | 44.528 | 265 | 141 | 3 | 1 | 259 | 1 | 265 | 1.75e-81 | 247 |
| MS.gene90172.t1 | AT4G28050 | 42.636 | 258 | 146 | 1 | 4 | 259 | 5 | 262 | 4.27e-78 | 237 |
| MS.gene90172.t1 | AT4G30430 | 41.603 | 262 | 151 | 1 | 3 | 262 | 4 | 265 | 2.35e-76 | 233 |
| MS.gene90172.t1 | AT2G23810 | 42.966 | 263 | 147 | 2 | 4 | 263 | 5 | 267 | 3.11e-76 | 233 |
| MS.gene90172.t1 | AT5G60220 | 43.893 | 262 | 141 | 3 | 1 | 256 | 1 | 262 | 2.04e-63 | 202 |
| MS.gene90172.t1 | AT1G18520 | 38.550 | 262 | 153 | 4 | 3 | 257 | 4 | 264 | 5.14e-61 | 194 |
| MS.gene90172.t1 | AT3G12090 | 40.316 | 253 | 139 | 4 | 4 | 256 | 5 | 245 | 1.29e-58 | 188 |
| MS.gene90172.t1 | AT4G23410 | 37.066 | 259 | 152 | 3 | 3 | 261 | 4 | 251 | 3.13e-55 | 179 |
| MS.gene90172.t1 | AT1G63260 | 32.171 | 258 | 167 | 3 | 1 | 257 | 3 | 253 | 2.74e-54 | 176 |
| MS.gene90172.t1 | AT1G63260 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.36e-51 | 169 |
| MS.gene90172.t1 | AT1G63260 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.36e-51 | 169 |
| MS.gene90172.t1 | AT1G63260 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 4.40e-51 | 169 |
| MS.gene90172.t1 | AT1G63260 | 32.719 | 217 | 144 | 2 | 1 | 216 | 3 | 218 | 3.48e-46 | 154 |
| MS.gene90172.t1 | AT3G45600 | 43.275 | 171 | 92 | 2 | 1 | 166 | 1 | 171 | 2.99e-43 | 146 |
| MS.gene90172.t1 | AT2G03840 | 29.707 | 239 | 160 | 4 | 19 | 251 | 32 | 268 | 1.40e-37 | 134 |
| MS.gene90172.t1 | AT1G63260 | 30.337 | 178 | 123 | 1 | 1 | 178 | 3 | 179 | 2.22e-33 | 121 |
| MS.gene90172.t1 | AT5G23030 | 27.132 | 258 | 183 | 2 | 1 | 256 | 2 | 256 | 2.92e-31 | 117 |
| MS.gene90172.t1 | AT5G57810 | 26.316 | 133 | 82 | 1 | 131 | 247 | 173 | 305 | 4.43e-16 | 77.0 |
Find 47 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTAATAGGGCTTATT+TGG | 0.104253 | 5.1:+20663448 | MS.gene90172:CDS |
| CTGGTCTCATTGGTTCCTTT+TGG | 0.214283 | 5.1:+20663312 | MS.gene90172:CDS |
| CTCTTAGTTGTGTCTCTTGC+TGG | 0.223492 | 5.1:+20663293 | MS.gene90172:CDS |
| ATGTCTGCTGCATTGTTTAT+TGG | 0.243435 | 5.1:-20664048 | None:intergenic |
| TATTATCTTGCTAGTTTGTT+TGG | 0.252856 | 5.1:+20663382 | MS.gene90172:CDS |
| TAGCAACTAGGTAGAATATT+AGG | 0.309164 | 5.1:-20663349 | None:intergenic |
| TATTCCAAATAAGCCCTATT+AGG | 0.318593 | 5.1:-20663452 | None:intergenic |
| TTAATTGTGGTTTATTTGAT+TGG | 0.318944 | 5.1:+20664204 | MS.gene90172:CDS |
| CAATCATTGGTGCTGGAATC+TGG | 0.324358 | 5.1:+20663201 | MS.gene90172:CDS |
| ATGGTATGATTGAACCTAAT+AGG | 0.329364 | 5.1:+20663438 | MS.gene90172:CDS |
| GCGAAAGAGATCCTCAGTTT+TGG | 0.353207 | 5.1:-20664247 | None:intergenic |
| GTGTCTCTTGCTGGTCTCAT+TGG | 0.354014 | 5.1:+20663302 | MS.gene90172:CDS |
| GGCTTATTTGGAATACCGTT+TGG | 0.361064 | 5.1:+20663460 | MS.gene90172:CDS |
| CTGGTTTGTTGGCAAATCTT+AGG | 0.375317 | 5.1:+20664133 | MS.gene90172:CDS |
| CATTTGTGAACCCAACATAC+TGG | 0.397625 | 5.1:+20664019 | MS.gene90172:CDS |
| TTGGACTAATCCAGTATGTT+GGG | 0.406980 | 5.1:-20664029 | None:intergenic |
| CAGATTCCAGCACCAATGAT+TGG | 0.408669 | 5.1:-20663200 | None:intergenic |
| TGCATTATTTATACCTGCAT+TGG | 0.425207 | 5.1:-20663629 | None:intergenic |
| AGTTGTAACAAAGTTGTGTT+TGG | 0.428684 | 5.1:-20664095 | None:intergenic |
| AGATTCCAGCACCAATGATT+GGG | 0.447069 | 5.1:-20663199 | None:intergenic |
| TGGTATGATTGAACCTAATA+GGG | 0.447157 | 5.1:+20663439 | MS.gene90172:CDS |
| AACTGTGACTCATGCAAAGC+TGG | 0.452176 | 5.1:+20664114 | MS.gene90172:CDS |
| GCAATGAGCAACAACATCAT+AGG | 0.463723 | 5.1:+20663143 | MS.gene90172:CDS |
| ATTGGACTAATCCAGTATGT+TGG | 0.468680 | 5.1:-20664030 | None:intergenic |
| GTTTACATGGTTACTCTTCG+TGG | 0.472729 | 5.1:+20663413 | MS.gene90172:CDS |
| CATGTGTCAAGTTTCTTCAA+TGG | 0.476338 | 5.1:+20663246 | MS.gene90172:CDS |
| ATCCTCTCAATCCCAATCAT+TGG | 0.477309 | 5.1:+20663188 | MS.gene90172:CDS |
| CTCATGCAAAGCTGGTTTGT+TGG | 0.480759 | 5.1:+20664122 | MS.gene90172:CDS |
| TCAATCCCAATCATTGGTGC+TGG | 0.481205 | 5.1:+20663194 | MS.gene90172:CDS |
| ATGGTTACTCTTCGTGGTCA+TGG | 0.481914 | 5.1:+20663419 | MS.gene90172:CDS |
| CAGACATGGATTGTCTTCAA+TGG | 0.495893 | 5.1:+20664064 | MS.gene90172:CDS |
| CAATGGCCAGTCATAATCCT+AGG | 0.501117 | 5.1:+20663263 | MS.gene90172:CDS |
| TTGAGAGGATTACAGCTACT+AGG | 0.501297 | 5.1:-20663175 | None:intergenic |
| TGGCAAATCTTAGGAAGGAA+TGG | 0.515362 | 5.1:+20664142 | MS.gene90172:CDS |
| GAGACATGAGATTCTCCAAA+AGG | 0.523414 | 5.1:-20663327 | None:intergenic |
| CACCAATGATTGGGATTGAG+AGG | 0.525563 | 5.1:-20663190 | None:intergenic |
| CTCTTTCGCAAGTACAAACA+AGG | 0.545612 | 5.1:+20664261 | MS.gene90172:CDS |
| GTGTATGCACATTGTGTTGG+TGG | 0.546354 | 5.1:-20663997 | None:intergenic |
| TGCACGTCTTACACCAATGC+AGG | 0.553446 | 5.1:+20663616 | MS.gene90172:CDS |
| AATAAACAATGCAGCAGACA+TGG | 0.558636 | 5.1:+20664050 | MS.gene90172:CDS |
| TTTGTTGGCAAATCTTAGGA+AGG | 0.565313 | 5.1:+20664137 | MS.gene90172:CDS |
| AACTTGACACATGTGTCTGC+TGG | 0.569579 | 5.1:-20663236 | None:intergenic |
| TAAGCACAAGCATAGCAACT+AGG | 0.591892 | 5.1:-20663361 | None:intergenic |
| AGAACACCTAGGATTATGAC+TGG | 0.617019 | 5.1:-20663269 | None:intergenic |
| AATGTGTATGCACATTGTGT+TGG | 0.656084 | 5.1:-20664000 | None:intergenic |
| CAACTAAGAGAAGAACACCT+AGG | 0.686330 | 5.1:-20663280 | None:intergenic |
| CTTAGTGAAACAAATATGTG+TGG | 0.704201 | 5.1:+20663551 | MS.gene90172:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTGTTTATTTTTTAT+TGG | - | chr5.1:20663863-20663882 | None:intergenic | 10.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5.1:20663965-20663984 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5.1:20663966-20663985 | None:intergenic | 20.0% |
| !! | TTAAAGGGGAAAAAAATTAT+TGG | - | chr5.1:20663951-20663970 | None:intergenic | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5.1:20664204-20664223 | MS.gene90172:CDS | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5.1:20663965-20663984 | MS.gene90172:intron | 20.0% |
| !!! | TTTGGTTATTTTTGTTTACA+TGG | + | chr5.1:20663400-20663419 | MS.gene90172:CDS | 20.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5.1:20663967-20663986 | None:intergenic | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5.1:20663511-20663530 | MS.gene90172:CDS | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5.1:20663964-20663983 | MS.gene90172:intron | 25.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5.1:20663382-20663401 | MS.gene90172:CDS | 25.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5.1:20664098-20664117 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5.1:20663438-20663457 | MS.gene90172:CDS | 30.0% | |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5.1:20663551-20663570 | MS.gene90172:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5.1:20663352-20663371 | None:intergenic | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5.1:20663455-20663474 | None:intergenic | 30.0% | |
| TGCATTATTTATACCTGCAT+TGG | - | chr5.1:20663632-20663651 | None:intergenic | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5.1:20663439-20663458 | MS.gene90172:CDS | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5.1:20663510-20663529 | MS.gene90172:CDS | 30.0% |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5.1:20663577-20663596 | MS.gene90172:CDS | 30.0% |
| !! | GTGACATTGACTTAAAATCT+GGG | + | chr5.1:20663769-20663788 | MS.gene90172:intron | 30.0% |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5.1:20664191-20664210 | MS.gene90172:CDS | 30.0% |
| AATAAACAATGCAGCAGACA+TGG | + | chr5.1:20664050-20664069 | MS.gene90172:CDS | 35.0% | |
| AATGTGTATGCACATTGTGT+TGG | - | chr5.1:20664003-20664022 | None:intergenic | 35.0% | |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5.1:20663478-20663497 | None:intergenic | 35.0% | |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5.1:20663738-20663757 | MS.gene90172:intron | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5.1:20664051-20664070 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5.1:20664033-20664052 | None:intergenic | 35.0% | |
| CATGTGTCAAGTTTCTTCAA+TGG | + | chr5.1:20663246-20663265 | MS.gene90172:CDS | 35.0% | |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5.1:20663448-20663467 | MS.gene90172:CDS | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5.1:20664032-20664051 | None:intergenic | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5.1:20664137-20664156 | MS.gene90172:CDS | 35.0% | |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5.1:20663474-20663493 | MS.gene90172:CDS | 35.0% |
| ! | GATCTGTATCTAGTTTCACT+CGG | - | chr5.1:20663700-20663719 | None:intergenic | 35.0% |
| ! | GTGTTTCTCTTTTAGATCTC+AGG | + | chr5.1:20663795-20663814 | MS.gene90172:intron | 35.0% |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5.1:20663473-20663492 | MS.gene90172:CDS | 35.0% |
| !! | GGTGACATTGACTTAAAATC+TGG | + | chr5.1:20663768-20663787 | MS.gene90172:intron | 35.0% |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5.1:20664220-20664239 | MS.gene90172:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5.1:20664236-20664255 | MS.gene90172:CDS | 35.0% |
| AGAACACCTAGGATTATGAC+TGG | - | chr5.1:20663272-20663291 | None:intergenic | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5.1:20663202-20663221 | None:intergenic | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5.1:20663188-20663207 | MS.gene90172:CDS | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5.1:20663283-20663302 | None:intergenic | 40.0% | |
| CATTTGTGAACCCAACATAC+TGG | + | chr5.1:20664019-20664038 | MS.gene90172:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5.1:20664261-20664280 | MS.gene90172:CDS | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5.1:20663330-20663349 | None:intergenic | 40.0% | |
| GCAATGAGCAACAACATCAT+AGG | + | chr5.1:20663143-20663162 | MS.gene90172:CDS | 40.0% | |
| GTTTACATGGTTACTCTTCG+TGG | + | chr5.1:20663413-20663432 | MS.gene90172:CDS | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5.1:20663364-20663383 | None:intergenic | 40.0% | |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5.1:20664142-20664161 | MS.gene90172:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5.1:20663178-20663197 | None:intergenic | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5.1:20664064-20664083 | MS.gene90172:CDS | 40.0% |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5.1:20663460-20663479 | MS.gene90172:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5.1:20663583-20663602 | MS.gene90172:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5.1:20664133-20664152 | MS.gene90172:CDS | 40.0% |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5.1:20664114-20664133 | MS.gene90172:CDS | 45.0% | |
| AACTTGACACATGTGTCTGC+TGG | - | chr5.1:20663239-20663258 | None:intergenic | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5.1:20663419-20663438 | MS.gene90172:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5.1:20663742-20663761 | MS.gene90172:intron | 45.0% | |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5.1:20663263-20663282 | MS.gene90172:CDS | 45.0% | |
| CACCAATGATTGGGATTGAG+AGG | - | chr5.1:20663193-20663212 | None:intergenic | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5.1:20663203-20663222 | None:intergenic | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5.1:20663293-20663312 | MS.gene90172:CDS | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5.1:20664000-20664019 | None:intergenic | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5.1:20663194-20663213 | MS.gene90172:CDS | 45.0% | |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5.1:20664250-20664269 | None:intergenic | 45.0% |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5.1:20663201-20663220 | MS.gene90172:CDS | 45.0% |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5.1:20664122-20664141 | MS.gene90172:CDS | 45.0% |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5.1:20663312-20663331 | MS.gene90172:CDS | 45.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5.1:20663616-20663635 | MS.gene90172:CDS | 50.0% | |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5.1:20663302-20663321 | MS.gene90172:CDS | 50.0% |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5.1:20663747-20663766 | MS.gene90172:intron | 50.0% |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5.1:20663754-20663773 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5.1:20663755-20663774 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 20663140 | 20664293 | 20663140 | ID=MS.gene90172 |
| chr5.1 | mRNA | 20663140 | 20664293 | 20663140 | ID=MS.gene90172.t1;Parent=MS.gene90172 |
| chr5.1 | exon | 20663140 | 20663637 | 20663140 | ID=MS.gene90172.t1.exon1;Parent=MS.gene90172.t1 |
| chr5.1 | CDS | 20663140 | 20663637 | 20663140 | ID=cds.MS.gene90172.t1;Parent=MS.gene90172.t1 |
| chr5.1 | exon | 20663982 | 20664293 | 20663982 | ID=MS.gene90172.t1.exon2;Parent=MS.gene90172.t1 |
| chr5.1 | CDS | 20663982 | 20664293 | 20663982 | ID=cds.MS.gene90172.t1;Parent=MS.gene90172.t1 |
| Gene Sequence |
| Protein sequence |
