Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90244.t1 | XP_003608382.2 | 62.8 | 323 | 76 | 4 | 1 | 291 | 207 | 517 | 2.00E-88 | 335.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90244.t1 | G7JV31 | 62.8 | 323 | 76 | 4 | 1 | 291 | 207 | 517 | 1.4e-88 | 335.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene90244 | 0.815527 | 8.83E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene90244 | 0.806478 | 8.07E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene90244 | 0.802451 | 5.58E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene90244 | 0.822078 | 2.87E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene90244 | 0.800288 | 1.55E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene90244 | 0.803057 | 4.18E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene90244 | 0.801335 | 9.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90244.t1 | MTR_4g093510 | 63.158 | 323 | 75 | 5 | 1 | 291 | 207 | 517 | 3.54e-111 | 332 |
| MS.gene90244.t1 | MTR_4g093510 | 34.948 | 289 | 106 | 10 | 69 | 289 | 140 | 414 | 6.07e-27 | 110 |
| MS.gene90244.t1 | MTR_4g093280 | 47.516 | 322 | 80 | 7 | 1 | 292 | 207 | 469 | 1.05e-79 | 249 |
| MS.gene90244.t1 | MTR_4g093260 | 48.302 | 265 | 85 | 6 | 1 | 233 | 216 | 460 | 1.97e-59 | 199 |
| MS.gene90244.t1 | MTR_4g093260 | 41.590 | 327 | 133 | 13 | 1 | 288 | 103 | 410 | 1.90e-52 | 181 |
| MS.gene90244.t1 | MTR_4g093260 | 43.871 | 155 | 52 | 2 | 88 | 211 | 53 | 203 | 1.87e-24 | 103 |
| MS.gene90244.t1 | MTR_4g093260 | 48.302 | 265 | 85 | 6 | 1 | 233 | 318 | 562 | 5.95e-59 | 199 |
| MS.gene90244.t1 | MTR_4g093260 | 41.590 | 327 | 133 | 13 | 1 | 288 | 205 | 512 | 1.02e-51 | 180 |
| MS.gene90244.t1 | MTR_4g093260 | 43.871 | 155 | 52 | 2 | 88 | 211 | 155 | 305 | 2.95e-24 | 103 |
| MS.gene90244.t1 | MTR_4g093260 | 48.302 | 265 | 85 | 6 | 1 | 233 | 309 | 553 | 6.07e-59 | 199 |
| MS.gene90244.t1 | MTR_4g093260 | 41.590 | 327 | 133 | 13 | 1 | 288 | 196 | 503 | 9.01e-52 | 180 |
| MS.gene90244.t1 | MTR_4g093260 | 43.871 | 155 | 52 | 2 | 88 | 211 | 146 | 296 | 2.98e-24 | 103 |
| MS.gene90244.t1 | MTR_4g093270 | 59.000 | 100 | 37 | 2 | 86 | 185 | 184 | 279 | 8.82e-27 | 107 |
| MS.gene90244.t1 | MTR_4g093270 | 55.789 | 95 | 39 | 2 | 4 | 97 | 205 | 297 | 1.04e-22 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCCGTCATGCCTAAAAT+TGG | 0.216519 | 4.2:+20115684 | None:intergenic |
| CTCTGTGTTTCCTCCCATTA+AGG | 0.223084 | 4.2:-20116717 | None:intergenic |
| ACAGACAGTACATATTAATT+TGG | 0.242461 | 4.2:-20116989 | None:intergenic |
| TAGCTGTTTCACCTCTTCTT+TGG | 0.246764 | 4.2:-20116806 | None:intergenic |
| GACTTGAATTCCCACCTTAA+TGG | 0.248092 | 4.2:+20116703 | MS.gene90244:CDS |
| AATGTGGTCTCTCACTTAAA+TGG | 0.261979 | 4.2:+20117036 | MS.gene90244:CDS |
| ACTTGAATTCCCACCTTAAT+GGG | 0.327925 | 4.2:+20116704 | MS.gene90244:CDS |
| GTTAATCTCTGCTGTTCCTT+TGG | 0.330433 | 4.2:-20115742 | None:intergenic |
| TTGATAGATTAAATAACCTT+AGG | 0.349536 | 4.2:+20117091 | MS.gene90244:CDS |
| CTTAAATGGGAAGATGCATT+TGG | 0.368212 | 4.2:+20117050 | MS.gene90244:CDS |
| TGTTCCTTTAGTTTCCACTA+TGG | 0.383160 | 4.2:-20116566 | None:intergenic |
| TTTGACTTGCCACAATATTA+GGG | 0.397124 | 4.2:-20116531 | None:intergenic |
| ACAGCAGAGAGCGGCAAAGC+TGG | 0.420496 | 4.2:+20116586 | MS.gene90244:CDS |
| TGATAGATTAAATAACCTTA+GGG | 0.440777 | 4.2:+20117092 | MS.gene90244:CDS |
| CTAAATTCTAATGTCAAGAA+TGG | 0.444687 | 4.2:+20116844 | MS.gene90244:CDS |
| ATGTGGTCTCTCACTTAAAT+GGG | 0.458643 | 4.2:+20117037 | MS.gene90244:CDS |
| TTGGAATTATGCATCCCAAC+AGG | 0.462818 | 4.2:-20116970 | None:intergenic |
| AGAACCTGTGTGAGCCTGTT+GGG | 0.465854 | 4.2:+20116956 | MS.gene90244:CDS |
| GTGGACTTGTGCTTTATGTT+CGG | 0.467459 | 4.2:+20116660 | MS.gene90244:CDS |
| TGTGTAGAAGTATAACTTTG+AGG | 0.470943 | 4.2:-20116619 | None:intergenic |
| TTCCCGTCATGCCTAAAATT+GGG | 0.474683 | 4.2:+20115685 | None:intergenic |
| TATTCTGAACAAAGGGTTGA+AGG | 0.478053 | 4.2:+20116873 | MS.gene90244:CDS |
| GAGAAGATATTCTGAACAAA+GGG | 0.482637 | 4.2:+20116866 | MS.gene90244:CDS |
| TAATATTGTGGCAAGTCAAA+AGG | 0.491507 | 4.2:+20116534 | MS.gene90244:CDS |
| ACCTACACTACATAAGCAAA+AGG | 0.492485 | 4.2:+20115929 | MS.gene90244:CDS |
| GTGGACGTGTGCTTTATGTT+TGG | 0.503390 | 4.2:+20115818 | MS.gene90244:CDS |
| TTCTACACAGAAGGAAGTGC+AGG | 0.516408 | 4.2:+20116633 | MS.gene90244:CDS |
| TGTGTTTCCTCCCATTAAGG+TGG | 0.519720 | 4.2:-20116714 | None:intergenic |
| GTTGAAGGGAACAGTGATGA+TGG | 0.524742 | 4.2:+20116888 | MS.gene90244:CDS |
| GTGTTTCCTCCCATTAAGGT+GGG | 0.543534 | 4.2:-20116713 | None:intergenic |
| AACAGTGATGATGGATGATA+AGG | 0.544536 | 4.2:+20116897 | MS.gene90244:CDS |
| AGAAGGAAGTGCAGGAAGAG+TGG | 0.545798 | 4.2:+20116641 | MS.gene90244:CDS |
| CCACATTGGCCTCACAATGA+AGG | 0.550544 | 4.2:-20117020 | None:intergenic |
| AGAAGGAAGTGCAGAAAGAG+TGG | 0.552790 | 4.2:+20115799 | MS.gene90244:CDS |
| GGAGAAGATATTCTGAACAA+AGG | 0.555648 | 4.2:+20116865 | MS.gene90244:CDS |
| ATTCTGAACAAAGGGTTGAA+GGG | 0.557338 | 4.2:+20116874 | MS.gene90244:CDS |
| ATAGATTAAATAACCTTAGG+GGG | 0.567281 | 4.2:+20117094 | MS.gene90244:CDS |
| TAGTCAGAGTTCTACACAGA+AGG | 0.572374 | 4.2:+20115782 | MS.gene90244:CDS |
| TGATAATAAAGAAATAGTAA+AGG | 0.578556 | 4.2:+20115983 | MS.gene90244:CDS |
| GCAGAGAGCGGCAAAGCTGG+TGG | 0.578659 | 4.2:+20116589 | MS.gene90244:CDS |
| TCAACCATAGTGGAAACTAA+AGG | 0.578827 | 4.2:+20116562 | MS.gene90244:CDS |
| AAAACTTTGAATTGTCATCT+CGG | 0.579057 | 4.2:+20115858 | MS.gene90244:CDS |
| ACAGCAGAGATTAACAAAGC+TGG | 0.583162 | 4.2:+20115750 | MS.gene90244:CDS |
| GATAAACTACCCTAATATTG+TGG | 0.583591 | 4.2:+20116522 | MS.gene90244:intron |
| AAAGGCATCATCAACCATAG+TGG | 0.585783 | 4.2:+20116552 | MS.gene90244:CDS |
| TGTTCCTTTGGTTTCCACTG+TGG | 0.597327 | 4.2:-20115730 | None:intergenic |
| AAGTTATACTTCTACACAGA+AGG | 0.598846 | 4.2:+20116624 | MS.gene90244:CDS |
| GAGCGGCAAAGCTGGTGGCA+AGG | 0.601488 | 4.2:+20116594 | MS.gene90244:CDS |
| TAATGTTGTCCTTCATTGTG+AGG | 0.605887 | 4.2:+20117011 | MS.gene90244:CDS |
| AATTTATCAGTCCAAAGAAG+AGG | 0.612873 | 4.2:+20116795 | MS.gene90244:CDS |
| GATAGATTAAATAACCTTAG+GGG | 0.623508 | 4.2:+20117093 | MS.gene90244:CDS |
| GATTAACAAAGCTGGTGGAG+AGG | 0.629202 | 4.2:+20115758 | MS.gene90244:CDS |
| GCAGAGATTAACAAAGCTGG+TGG | 0.630126 | 4.2:+20115753 | MS.gene90244:CDS |
| AAGAACCTGTGTGAGCCTGT+TGG | 0.634344 | 4.2:+20116955 | MS.gene90244:CDS |
| CCTTCATTGTGAGGCCAATG+TGG | 0.637198 | 4.2:+20117020 | MS.gene90244:CDS |
| ACTAAAGGAACAGCAGAGAG+CGG | 0.648424 | 4.2:+20116577 | MS.gene90244:CDS |
| TGAATTCCCACCTTAATGGG+AGG | 0.653071 | 4.2:+20116707 | MS.gene90244:CDS |
| ACTTTGAATTGTCATCTCGG+TGG | 0.657302 | 4.2:+20115861 | MS.gene90244:CDS |
| TCAGCCACAGTGGAAACCAA+AGG | 0.672852 | 4.2:+20115726 | MS.gene90244:CDS |
| GCATCCCAACAGGCTCACAC+AGG | 0.678013 | 4.2:-20116960 | None:intergenic |
| AAATGCGTCATCAGCCACAG+TGG | 0.678240 | 4.2:+20115716 | MS.gene90244:CDS |
| TAGATTAAATAACCTTAGGG+GGG | 0.678818 | 4.2:+20117095 | MS.gene90244:CDS |
| ATTTAAGTGAGAGACCACAT+TGG | 0.701361 | 4.2:-20117034 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATAATAAAGAAATAGTAA+AGG | + | chr4.2:20115983-20116002 | MS.gene90244:CDS | 15.0% |
| !! | AAATTTAAATTGTAGATTCG+AGG | + | chr4.2:20116405-20116424 | MS.gene90244:intron | 20.0% |
| !! | ACAATTTAAATTTGACCTTT+GGG | - | chr4.2:20116398-20116417 | None:intergenic | 20.0% |
| !! | TACAATTTAAATTTGACCTT+TGG | - | chr4.2:20116399-20116418 | None:intergenic | 20.0% |
| !! | TGATAGATTAAATAACCTTA+GGG | + | chr4.2:20117092-20117111 | MS.gene90244:CDS | 20.0% |
| !! | TTGATAGATTAAATAACCTT+AGG | + | chr4.2:20117091-20117110 | MS.gene90244:CDS | 20.0% |
| !!! | AACCTAATATTGATTAAACA+TGG | - | chr4.2:20116273-20116292 | None:intergenic | 20.0% |
| !!! | ACCTAATATTGATTAAACAT+GGG | - | chr4.2:20116272-20116291 | None:intergenic | 20.0% |
| ! | AAAACTTTGAATTGTCATCT+CGG | + | chr4.2:20115858-20115877 | MS.gene90244:CDS | 25.0% |
| ! | ACAGACAGTACATATTAATT+TGG | - | chr4.2:20116992-20117011 | None:intergenic | 25.0% |
| ! | ATAGATTAAATAACCTTAGG+GGG | + | chr4.2:20117094-20117113 | MS.gene90244:CDS | 25.0% |
| ! | CTAAATTCTAATGTCAAGAA+TGG | + | chr4.2:20116844-20116863 | MS.gene90244:CDS | 25.0% |
| ! | GATAGATTAAATAACCTTAG+GGG | + | chr4.2:20117093-20117112 | MS.gene90244:CDS | 25.0% |
| ! | TCCCATGTTTAATCAATATT+AGG | + | chr4.2:20116268-20116287 | MS.gene90244:intron | 25.0% |
| !! | TTATTTAGAGCACTTAATGA+GGG | + | chr4.2:20116052-20116071 | MS.gene90244:intron | 25.0% |
| !! | TTTATTTAGAGCACTTAATG+AGG | + | chr4.2:20116051-20116070 | MS.gene90244:intron | 25.0% |
| !!! | AGGAATTTCTTTTTTCTCAA+TGG | - | chr4.2:20116144-20116163 | None:intergenic | 25.0% |
| !!! | ATCTTTATTTTGACTGAATG+AGG | - | chr4.2:20116373-20116392 | None:intergenic | 25.0% |
| AAGTTATACTTCTACACAGA+AGG | + | chr4.2:20116624-20116643 | MS.gene90244:CDS | 30.0% | |
| AATTTATCAGTCCAAAGAAG+AGG | + | chr4.2:20116795-20116814 | MS.gene90244:CDS | 30.0% | |
| GAGAAGATATTCTGAACAAA+GGG | + | chr4.2:20116866-20116885 | MS.gene90244:CDS | 30.0% | |
| GATAAACTACCCTAATATTG+TGG | + | chr4.2:20116522-20116541 | MS.gene90244:intron | 30.0% | |
| GGTGCAAAAATTTCAAAAGA+AGG | + | chr4.2:20116918-20116937 | MS.gene90244:CDS | 30.0% | |
| GTGTTGTGAAATTAATCTGA+TGG | + | chr4.2:20116023-20116042 | MS.gene90244:intron | 30.0% | |
| GTTAGAACTTATTGATCCAA+TGG | + | chr4.2:20116290-20116309 | MS.gene90244:intron | 30.0% | |
| TAATATTGTGGCAAGTCAAA+AGG | + | chr4.2:20116534-20116553 | MS.gene90244:CDS | 30.0% | |
| TAGATTAAATAACCTTAGGG+GGG | + | chr4.2:20117095-20117114 | MS.gene90244:CDS | 30.0% | |
| TCAAAATAAAGATCTCCCAA+AGG | + | chr4.2:20116380-20116399 | MS.gene90244:intron | 30.0% | |
| TCTTGTAAACCTTTCACATA+TGG | - | chr4.2:20116443-20116462 | None:intergenic | 30.0% | |
| ! | ATATTTGTTGCCATTGTTGT+TGG | + | chr4.2:20116494-20116513 | MS.gene90244:intron | 30.0% |
| ! | TGTGTAGAAGTATAACTTTG+AGG | - | chr4.2:20116622-20116641 | None:intergenic | 30.0% |
| !! | TTTGACTTGCCACAATATTA+GGG | - | chr4.2:20116534-20116553 | None:intergenic | 30.0% |
| !!! | TTTTGACTTGCCACAATATT+AGG | - | chr4.2:20116535-20116554 | None:intergenic | 30.0% |
| AATGTGGTCTCTCACTTAAA+TGG | + | chr4.2:20117036-20117055 | MS.gene90244:CDS | 35.0% | |
| ACCTACACTACATAAGCAAA+AGG | + | chr4.2:20115929-20115948 | MS.gene90244:CDS | 35.0% | |
| ACTTGAATTCCCACCTTAAT+GGG | + | chr4.2:20116704-20116723 | MS.gene90244:CDS | 35.0% | |
| AGAACTTATTGATCCAATGG+TGG | + | chr4.2:20116293-20116312 | MS.gene90244:intron | 35.0% | |
| ATGTGGTCTCTCACTTAAAT+GGG | + | chr4.2:20117037-20117056 | MS.gene90244:CDS | 35.0% | |
| ATTCTGAACAAAGGGTTGAA+GGG | + | chr4.2:20116874-20116893 | MS.gene90244:CDS | 35.0% | |
| ATTTAAGTGAGAGACCACAT+TGG | - | chr4.2:20117037-20117056 | None:intergenic | 35.0% | |
| CTTAAATGGGAAGATGCATT+TGG | + | chr4.2:20117050-20117069 | MS.gene90244:CDS | 35.0% | |
| GGAGAAGATATTCTGAACAA+AGG | + | chr4.2:20116865-20116884 | MS.gene90244:CDS | 35.0% | |
| GTGGAAAACAAACTTGTACA+TGG | + | chr4.2:20116312-20116331 | MS.gene90244:intron | 35.0% | |
| TAATGTTGTCCTTCATTGTG+AGG | + | chr4.2:20117011-20117030 | MS.gene90244:CDS | 35.0% | |
| TATTCTGAACAAAGGGTTGA+AGG | + | chr4.2:20116873-20116892 | MS.gene90244:CDS | 35.0% | |
| TTATCTAGCACCAACAACAA+TGG | - | chr4.2:20116507-20116526 | None:intergenic | 35.0% | |
| ! | AACACTGTTTTACCTATGCA+CGG | + | chr4.2:20116338-20116357 | MS.gene90244:intron | 35.0% |
| ! | TCAACCATAGTGGAAACTAA+AGG | + | chr4.2:20116562-20116581 | MS.gene90244:CDS | 35.0% |
| ! | TCCTTTTGCTTATGTAGTGT+AGG | - | chr4.2:20115933-20115952 | None:intergenic | 35.0% |
| ! | TGTTCCTTTAGTTTCCACTA+TGG | - | chr4.2:20116569-20116588 | None:intergenic | 35.0% |
| !! | AACAGTGATGATGGATGATA+AGG | + | chr4.2:20116897-20116916 | MS.gene90244:CDS | 35.0% |
| !! | ACAAGTTTGTTTTCCACCAT+TGG | - | chr4.2:20116309-20116328 | None:intergenic | 35.0% |
| !! | GAACAAAGGCATCAAAGATT+TGG | + | chr4.2:20116115-20116134 | MS.gene90244:intron | 35.0% |
| !!! | TTTTGACTTGGCCCAATTTT+AGG | - | chr4.2:20115699-20115718 | None:intergenic | 35.0% |
| AAACACACATGTGCATGGTA+CGG | - | chr4.2:20116229-20116248 | None:intergenic | 40.0% | |
| ACAGCAGAGATTAACAAAGC+TGG | + | chr4.2:20115750-20115769 | MS.gene90244:CDS | 40.0% | |
| ACTTTGAATTGTCATCTCGG+TGG | + | chr4.2:20115861-20115880 | MS.gene90244:CDS | 40.0% | |
| AGACTCCAAACAGAGAACAA+AGG | + | chr4.2:20116101-20116120 | MS.gene90244:intron | 40.0% | |
| ATCTCGGTGGAAAAAAACAC+AGG | + | chr4.2:20115874-20115893 | MS.gene90244:CDS | 40.0% | |
| CATAGAAACACACATGTGCA+TGG | - | chr4.2:20116234-20116253 | None:intergenic | 40.0% | |
| GACTTGAATTCCCACCTTAA+TGG | + | chr4.2:20116703-20116722 | MS.gene90244:CDS | 40.0% | |
| GAGTTTCTTGTGCAGACAAA+TGG | + | chr4.2:20116074-20116093 | MS.gene90244:intron | 40.0% | |
| GCAAGCAAGGATTCATTTGT+AGG | + | chr4.2:20116172-20116191 | MS.gene90244:intron | 40.0% | |
| GTGGACTTGTGCTTTATGTT+CGG | + | chr4.2:20116660-20116679 | MS.gene90244:CDS | 40.0% | |
| GTTAATCTCTGCTGTTCCTT+TGG | - | chr4.2:20115745-20115764 | None:intergenic | 40.0% | |
| TAGTCAGAGTTCTACACAGA+AGG | + | chr4.2:20115782-20115801 | MS.gene90244:CDS | 40.0% | |
| TCTCGGTGGAAAAAAACACA+GGG | + | chr4.2:20115875-20115894 | MS.gene90244:CDS | 40.0% | |
| TGATGCCTTTGTTCTCTGTT+TGG | - | chr4.2:20116109-20116128 | None:intergenic | 40.0% | |
| TTGGAATTATGCATCCCAAC+AGG | - | chr4.2:20116973-20116992 | None:intergenic | 40.0% | |
| ! | TAGCTGTTTCACCTCTTCTT+TGG | - | chr4.2:20116809-20116828 | None:intergenic | 40.0% |
| !! | AAAGGCATCATCAACCATAG+TGG | + | chr4.2:20116552-20116571 | MS.gene90244:CDS | 40.0% |
| !! | CAAAGGCATCAAAGATTTGG+AGG | + | chr4.2:20116118-20116137 | MS.gene90244:intron | 40.0% |
| !! | TCATTTGTAGGCTAGTTCTG+TGG | + | chr4.2:20116184-20116203 | MS.gene90244:intron | 40.0% |
| ACTAAAGGAACAGCAGAGAG+CGG | + | chr4.2:20116577-20116596 | MS.gene90244:CDS | 45.0% | |
| ATCCTTGCTTGCTTAGTAGC+AGG | - | chr4.2:20116164-20116183 | None:intergenic | 45.0% | |
| CTCTGTGTTTCCTCCCATTA+AGG | - | chr4.2:20116720-20116739 | None:intergenic | 45.0% | |
| GATTAACAAAGCTGGTGGAG+AGG | + | chr4.2:20115758-20115777 | MS.gene90244:CDS | 45.0% | |
| GCAGAGATTAACAAAGCTGG+TGG | + | chr4.2:20115753-20115772 | MS.gene90244:CDS | 45.0% | |
| GCTAAGAGGCCATATGTGAA+AGG | + | chr4.2:20116431-20116450 | MS.gene90244:intron | 45.0% | |
| GTGGACGTGTGCTTTATGTT+TGG | + | chr4.2:20115818-20115837 | MS.gene90244:CDS | 45.0% | |
| GTGTTTCCTCCCATTAAGGT+GGG | - | chr4.2:20116716-20116735 | None:intergenic | 45.0% | |
| GTTGAAGGGAACAGTGATGA+TGG | + | chr4.2:20116888-20116907 | MS.gene90244:CDS | 45.0% | |
| TAGATTCGAGGCATGCTAAG+AGG | + | chr4.2:20116417-20116436 | MS.gene90244:intron | 45.0% | |
| TGAATTCCCACCTTAATGGG+AGG | + | chr4.2:20116707-20116726 | MS.gene90244:CDS | 45.0% | |
| TGTGTTTCCTCCCATTAAGG+TGG | - | chr4.2:20116717-20116736 | None:intergenic | 45.0% | |
| TTCCTGCTACTAAGCAAGCA+AGG | + | chr4.2:20116159-20116178 | MS.gene90244:intron | 45.0% | |
| ! | AGAAGGAAGTGCAGAAAGAG+TGG | + | chr4.2:20115799-20115818 | MS.gene90244:CDS | 45.0% |
| ! | TGTTCCTTTGGTTTCCACTG+TGG | - | chr4.2:20115733-20115752 | None:intergenic | 45.0% |
| ! | TTCTACACAGAAGGAAGTGC+AGG | + | chr4.2:20115791-20115810 | MS.gene90244:CDS | 45.0% |
| !!! | GCTGATGACGCATTTTGACT+TGG | - | chr4.2:20115711-20115730 | None:intergenic | 45.0% |
| AAATGCGTCATCAGCCACAG+TGG | + | chr4.2:20115716-20115735 | MS.gene90244:CDS | 50.0% | |
| AAGAACCTGTGTGAGCCTGT+TGG | + | chr4.2:20116955-20116974 | MS.gene90244:CDS | 50.0% | |
| AGAACCTGTGTGAGCCTGTT+GGG | + | chr4.2:20116956-20116975 | MS.gene90244:CDS | 50.0% | |
| CAATGCAAATGTCCCCCCTA+AGG | - | chr4.2:20117110-20117129 | None:intergenic | 50.0% | |
| CCTTCATTGTGAGGCCAATG+TGG | + | chr4.2:20117020-20117039 | MS.gene90244:CDS | 50.0% | |
| CTGTGGTGCACAAGTGAAGT+AGG | + | chr4.2:20116201-20116220 | MS.gene90244:intron | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+GGG | + | chr4.2:20116463-20116482 | MS.gene90244:intron | 50.0% | |
| TCAGCCACAGTGGAAACCAA+AGG | + | chr4.2:20115726-20115745 | MS.gene90244:CDS | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+GGG | + | chr4.2:20116464-20116483 | MS.gene90244:intron | 50.0% | |
| TGTGTGTGTGTGTGTGTGTG+TGG | + | chr4.2:20116464-20116483 | MS.gene90244:intron | 50.0% | |
| ! | AGAAGGAAGTGCAGGAAGAG+TGG | + | chr4.2:20116641-20116660 | MS.gene90244:CDS | 50.0% |
| ! | CCACATTGGCCTCACAATGA+AGG | - | chr4.2:20117023-20117042 | None:intergenic | 50.0% |
| !! | AGGCTAGTTCTACCGTGCAT+AGG | - | chr4.2:20116353-20116372 | None:intergenic | 50.0% |
| ACAGCAGAGAGCGGCAAAGC+TGG | + | chr4.2:20116586-20116605 | MS.gene90244:CDS | 60.0% | |
| GCATCCCAACAGGCTCACAC+AGG | - | chr4.2:20116963-20116982 | None:intergenic | 60.0% | |
| GAGCGGCAAAGCTGGTGGCA+AGG | + | chr4.2:20116594-20116613 | MS.gene90244:CDS | 65.0% | |
| GCAGAGAGCGGCAAAGCTGG+TGG | + | chr4.2:20116589-20116608 | MS.gene90244:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 20115693 | 20117134 | 20115693 | ID=MS.gene90244 |
| chr4.2 | mRNA | 20115693 | 20117134 | 20115693 | ID=MS.gene90244.t1;Parent=MS.gene90244 |
| chr4.2 | exon | 20115693 | 20116004 | 20115693 | ID=MS.gene90244.t1.exon1;Parent=MS.gene90244.t1 |
| chr4.2 | CDS | 20115693 | 20116004 | 20115693 | ID=cds.MS.gene90244.t1;Parent=MS.gene90244.t1 |
| chr4.2 | exon | 20116523 | 20117134 | 20116523 | ID=MS.gene90244.t1.exon2;Parent=MS.gene90244.t1 |
| chr4.2 | CDS | 20116523 | 20117134 | 20116523 | ID=cds.MS.gene90244.t1;Parent=MS.gene90244.t1 |
| Gene Sequence |
| Protein sequence |
