AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051247


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051247.t1 MTR_8g036220 97.817 229 5 0 1 229 1 229 5.73e-171 469
MS.gene051247.t1 MTR_8g089985 57.466 221 89 3 6 226 8 223 1.75e-91 268
MS.gene051247.t1 MTR_3g086980 56.109 221 91 3 6 226 7 221 2.33e-90 265
MS.gene051247.t1 MTR_1g052475 53.982 226 100 3 1 226 1 222 3.16e-88 260
MS.gene051247.t1 MTR_0262s0050 55.660 212 91 2 1 212 1 209 1.81e-87 258
MS.gene051247.t1 MTR_2g083860 52.361 233 89 3 1 227 1 217 4.96e-82 244
MS.gene051247.t1 MTR_7g405790 54.884 215 87 2 15 227 14 220 1.14e-81 243
MS.gene051247.t1 MTR_2g075950 53.304 227 95 4 1 227 1 216 3.07e-81 242
MS.gene051247.t1 MTR_4g064897 53.182 220 93 3 8 227 5 214 2.53e-80 239
MS.gene051247.t1 MTR_4g088090 53.304 227 95 4 1 227 1 216 7.23e-79 236
MS.gene051247.t1 MTR_3g069510 55.140 214 88 2 14 227 10 215 7.31e-79 236
MS.gene051247.t1 MTR_8g027220 53.917 217 93 3 10 225 20 230 1.06e-78 236
MS.gene051247.t1 MTR_2g014990 52.863 227 96 4 1 227 1 216 3.12e-78 234
MS.gene051247.t1 MTR_2g005510 60.556 180 71 0 8 187 7 186 3.23e-78 234
MS.gene051247.t1 MTR_4g079350 51.542 227 99 4 1 227 1 216 2.74e-77 232
MS.gene051247.t1 MTR_7g051940 55.349 215 83 3 15 227 12 215 4.02e-77 231
MS.gene051247.t1 MTR_1g078200 51.869 214 101 1 14 227 12 223 8.53e-77 231
MS.gene051247.t1 MTR_2g090865 60.221 181 71 1 6 186 2 181 1.57e-75 228
MS.gene051247.t1 MTR_6g079550 50.679 221 93 4 11 227 7 215 4.33e-67 206
MS.gene051247.t1 MTR_7g117910 59.028 144 59 0 13 156 17 160 5.06e-62 193
MS.gene051247.t1 MTR_8g107070 53.933 178 82 0 11 188 9 186 1.70e-59 188
MS.gene051247.t1 MTR_2g027660 51.220 164 80 0 15 178 5 168 6.34e-57 180
MS.gene051247.t1 MTR_8g006970 42.991 214 105 3 14 227 20 216 3.34e-56 178
MS.gene051247.t1 MTR_8g031660 53.049 164 77 0 15 178 5 168 9.14e-56 177
MS.gene051247.t1 MTR_6g021790 50.610 164 81 0 14 177 4 167 1.09e-55 177
MS.gene051247.t1 MTR_8g006970 50.000 164 82 0 14 177 6 169 1.63e-55 175
MS.gene051247.t1 MTR_7g081700 49.123 171 87 0 14 184 6 176 1.94e-55 176
MS.gene051247.t1 MTR_8g031870 52.229 157 75 0 15 171 5 161 2.72e-54 172
MS.gene051247.t1 MTR_8g031680 50.610 164 81 0 15 178 5 168 1.25e-53 171
MS.gene051247.t1 MTR_1g068740 42.157 204 114 2 14 216 13 213 5.12e-51 165
MS.gene051247.t1 MTR_1g068730 41.667 204 115 2 14 216 13 213 1.74e-50 164
MS.gene051247.t1 MTR_1g115325 41.395 215 111 3 14 226 13 214 1.77e-50 164
MS.gene051247.t1 MTR_7g100020 48.485 165 84 1 14 177 13 177 3.03e-50 163
MS.gene051247.t1 MTR_2g005500 39.906 213 111 1 14 226 7 202 1.37e-49 161
MS.gene051247.t1 MTR_8g031830 50.327 153 76 0 15 167 5 157 3.64e-49 160
MS.gene051247.t1 MTR_1g094220 48.701 154 78 1 18 170 33 186 6.75e-49 159
MS.gene051247.t1 MTR_1g094220 48.701 154 78 1 18 170 33 186 7.66e-49 159
MS.gene051247.t1 MTR_1g094220 48.701 154 78 1 18 170 33 186 9.52e-49 159
MS.gene051247.t1 MTR_1g094220 48.701 154 78 1 18 170 33 186 3.03e-48 159
MS.gene051247.t1 MTR_3g064390 45.098 153 84 0 18 170 12 164 2.42e-45 150
MS.gene051247.t1 MTR_4g063160 45.509 167 88 2 14 177 13 179 2.91e-45 150
MS.gene051247.t1 MTR_5g076590 45.098 153 84 0 18 170 12 164 9.79e-45 148
MS.gene051247.t1 MTR_2g096550 44.578 166 90 2 14 177 13 178 1.62e-44 148
MS.gene051247.t1 MTR_1g029450 41.667 216 108 6 14 227 15 214 2.08e-43 145
MS.gene051247.t1 MTR_4g099470 47.826 138 72 0 47 184 15 152 2.12e-43 144
MS.gene051247.t1 MTR_8g093740 43.316 187 103 3 10 194 7 192 2.24e-43 145
MS.gene051247.t1 MTR_3g087160 37.888 161 100 0 17 177 10 170 1.44e-42 143
MS.gene051247.t1 MTR_8g090215 38.509 161 99 0 17 177 10 170 1.86e-42 143
MS.gene051247.t1 MTR_8g103550 35.238 210 114 3 18 227 11 198 4.24e-42 142
MS.gene051247.t1 MTR_3g096350 44.262 183 99 3 14 194 10 191 4.77e-42 142
MS.gene051247.t1 MTR_1g068740 50.794 126 62 0 14 139 13 138 1.54e-41 140
MS.gene051247.t1 MTR_1g068730 50.794 126 62 0 14 139 13 138 1.73e-41 139
MS.gene051247.t1 MTR_7g103070 40.741 216 111 4 14 227 14 214 3.37e-41 140
MS.gene051247.t1 MTR_2g102060 41.176 153 90 0 18 170 12 164 4.02e-41 139
MS.gene051247.t1 MTR_5g013900 38.312 154 95 0 17 170 10 163 5.15e-40 137
MS.gene051247.t1 MTR_4g098950 37.662 154 96 0 17 170 10 163 6.36e-39 134
MS.gene051247.t1 MTR_1g097420 41.718 163 88 3 16 171 8 170 7.13e-39 134
MS.gene051247.t1 MTR_8g092020 41.718 163 88 3 16 171 12 174 3.40e-38 132
MS.gene051247.t1 MTR_1g062760 44.654 159 85 3 14 170 12 169 9.98e-38 131
MS.gene051247.t1 MTR_1g090717 44.910 167 89 3 14 177 13 179 4.28e-37 129
MS.gene051247.t1 MTR_4g069850 41.358 162 88 4 16 170 8 169 8.16e-37 128
MS.gene051247.t1 MTR_2g101890 41.358 162 88 3 16 170 10 171 6.46e-36 126
MS.gene051247.t1 MTR_4g012940 41.358 162 88 3 16 170 8 169 8.09e-36 126
MS.gene051247.t1 MTR_3g064390 44.800 125 69 0 18 142 12 136 2.23e-35 123
MS.gene051247.t1 MTR_6g039490 40.000 165 92 4 16 173 8 172 3.94e-35 124
MS.gene051247.t1 MTR_3g096350 48.855 131 64 3 14 142 10 139 3.44e-34 120
MS.gene051247.t1 MTR_3g096350 49.180 122 59 3 13 132 9 129 9.86e-33 116
MS.gene051247.t1 MTR_1g097420 35.417 192 90 4 16 173 8 199 1.03e-32 119
MS.gene051247.t1 MTR_3g053480 86.667 60 8 0 1 60 1 60 1.27e-30 108
MS.gene051247.t1 MTR_8g099250 83.333 60 10 0 1 60 1 60 2.24e-29 105
MS.gene051247.t1 MTR_8g093740 39.333 150 89 2 47 194 10 159 7.38e-29 107
MS.gene051247.t1 MTR_7g103070 39.521 167 84 4 63 227 7 158 1.88e-27 103
MS.gene051247.t1 MTR_3g107713 31.765 170 112 4 9 177 5 171 9.65e-24 95.1
MS.gene051247.t1 MTR_3g107717 31.765 170 112 4 9 177 5 171 9.86e-24 95.1
MS.gene051247.t1 MTR_3g107707 31.765 170 112 4 9 177 5 171 9.96e-24 95.1
MS.gene051247.t1 MTR_2g005500 34.756 164 67 1 14 177 7 130 9.01e-22 88.2
MS.gene051247.t1 MTR_8g031810 43.269 104 45 1 15 118 5 94 1.56e-21 85.9
MS.gene051247.t1 MTR_1g069245 41.880 117 63 3 8 123 87 199 5.97e-21 87.8
MS.gene051247.t1 MTR_1452s0010 44.304 79 44 0 36 114 1 79 1.12e-19 81.3
MS.gene051247.t1 MTR_3g078260 31.319 182 111 6 16 185 8 187 1.67e-19 83.6
MS.gene051247.t1 MTR_6g087980 32.335 167 99 5 16 170 6 170 3.47e-18 80.1
MS.gene051247.t1 MTR_4g088055 31.138 167 101 5 16 170 6 170 1.13e-17 78.6
MS.gene051247.t1 MTR_2g078000 63.265 49 18 0 77 125 46 94 4.09e-17 74.3
MS.gene051247.t1 MTR_2g090875 30.539 167 102 5 16 170 6 170 4.95e-17 76.6
MS.gene051247.t1 MTR_4g113620 28.313 166 107 5 17 182 14 167 6.95e-17 76.6
MS.gene051247.t1 MTR_5g022600 30.178 169 100 6 16 170 6 170 9.87e-17 75.9
MS.gene051247.t1 MTR_4g073250 31.737 167 100 6 16 170 6 170 1.46e-16 75.5
MS.gene051247.t1 MTR_8g075240 30.178 169 100 6 16 170 6 170 3.33e-16 74.3
MS.gene051247.t1 MTR_1686s0010 34.783 92 60 0 36 127 1 92 4.25e-15 68.9
MS.gene051247.t1 MTR_3g078260 35.000 120 75 3 18 136 10 127 6.01e-15 70.1
MS.gene051247.t1 MTR_2g078560 44.000 75 32 2 78 146 54 124 1.84e-12 65.9
MS.gene051247.t1 MTR_1g059590 31.210 157 101 3 21 177 400 549 1.56e-11 63.5
MS.gene051247.t1 MTR_1g059590 31.210 157 101 3 21 177 433 582 1.78e-11 63.5
MS.gene051247.t1 MTR_5g092060 24.405 168 119 3 17 178 105 270 3.54e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051247.t1 AT5G47960 56.195 226 93 3 1 226 1 220 3.96e-94 275
MS.gene051247.t1 AT3G12160 57.080 226 90 3 1 226 1 219 2.06e-93 273
MS.gene051247.t1 AT4G39990 55.760 217 86 3 13 227 14 222 3.63e-86 255
MS.gene051247.t1 AT5G65270 54.419 215 96 1 13 227 14 226 2.97e-84 250
MS.gene051247.t1 AT2G43130 53.540 226 85 3 7 227 3 213 1.27e-82 245
MS.gene051247.t1 AT1G16920 55.066 227 90 4 1 227 1 215 6.68e-82 244
MS.gene051247.t1 AT1G07410 54.751 221 89 3 8 228 5 214 6.90e-82 243
MS.gene051247.t1 AT4G18430 57.895 190 77 1 1 190 1 187 1.39e-81 243
MS.gene051247.t1 AT4G18800 54.626 227 89 3 1 227 1 213 1.90e-81 243
MS.gene051247.t1 AT1G09630 55.300 217 89 3 11 227 7 215 7.31e-81 241
MS.gene051247.t1 AT5G45750 52.863 227 95 3 1 227 1 215 1.06e-79 238
MS.gene051247.t1 AT5G60860 52.423 227 97 3 1 227 1 216 5.64e-79 236
MS.gene051247.t1 AT1G06400 51.515 231 92 3 1 227 1 215 9.12e-79 236
MS.gene051247.t1 AT3G15060 51.982 227 98 3 1 227 1 216 2.07e-78 235
MS.gene051247.t1 AT2G31680 52.511 219 98 2 9 227 5 217 3.24e-78 234
MS.gene051247.t1 AT1G05810 51.818 220 98 2 9 227 4 216 5.59e-78 234
MS.gene051247.t1 AT3G46830 62.573 171 64 0 14 184 10 180 1.48e-77 233
MS.gene051247.t1 AT3G46830 62.573 171 64 0 14 184 10 180 1.48e-77 233
MS.gene051247.t1 AT1G05810 51.818 220 98 2 9 227 50 262 1.98e-77 234
MS.gene051247.t1 AT5G59150 61.988 171 65 0 14 184 10 180 9.34e-77 231
MS.gene051247.t1 AT5G47520 52.055 219 100 3 9 227 7 220 1.94e-76 230
MS.gene051247.t1 AT2G33870 56.383 188 79 1 1 188 1 185 5.97e-76 229
MS.gene051247.t1 AT1G28550 56.915 188 78 1 1 188 1 185 1.05e-75 228
MS.gene051247.t1 AT3G07410 49.550 222 105 1 6 227 2 216 6.66e-75 226
MS.gene051247.t1 AT1G01200 51.142 219 97 4 11 225 23 235 1.82e-73 223
MS.gene051247.t1 AT1G18200 56.452 186 76 1 11 191 8 193 4.79e-70 214
MS.gene051247.t1 AT1G73640 56.742 178 77 0 7 184 4 181 6.42e-68 209
MS.gene051247.t1 AT4G17170 51.220 164 80 0 15 178 5 168 7.01e-57 180
MS.gene051247.t1 AT4G35860 51.220 164 80 0 14 177 4 167 1.17e-56 179
MS.gene051247.t1 AT1G02130 42.523 214 106 3 14 227 6 202 2.59e-56 178
MS.gene051247.t1 AT4G17160 50.610 164 81 0 15 178 5 168 1.16e-55 177
MS.gene051247.t1 AT5G47200 47.953 171 89 0 14 184 6 176 5.39e-55 175
MS.gene051247.t1 AT4G17530 47.953 171 89 0 14 184 6 176 6.41e-55 174
MS.gene051247.t1 AT5G59150 59.055 127 52 0 58 184 3 129 8.63e-51 163
MS.gene051247.t1 AT5G59840 41.589 214 112 3 14 226 13 214 1.62e-50 164
MS.gene051247.t1 AT3G11730 45.029 171 94 0 14 184 6 176 1.63e-50 163
MS.gene051247.t1 AT3G53610 41.589 214 112 3 14 226 13 214 2.75e-50 163
MS.gene051247.t1 AT3G53610 41.589 214 112 3 14 226 13 214 2.75e-50 163
MS.gene051247.t1 AT3G53610 41.589 214 112 3 14 226 13 214 2.75e-50 163
MS.gene051247.t1 AT3G46060 49.068 161 81 1 14 173 13 173 6.27e-50 162
MS.gene051247.t1 AT3G46060 49.068 161 81 1 14 173 13 173 6.27e-50 162
MS.gene051247.t1 AT3G46060 49.068 161 81 1 14 173 13 173 6.27e-50 162
MS.gene051247.t1 AT3G54840 49.351 154 77 1 18 170 35 188 2.35e-49 160
MS.gene051247.t1 AT3G54840 49.351 154 77 1 18 170 35 188 2.76e-49 160
MS.gene051247.t1 AT3G09900 40.741 216 114 3 14 227 13 216 4.53e-49 160
MS.gene051247.t1 AT3G54840 49.020 153 77 1 19 170 2 154 4.79e-49 158
MS.gene051247.t1 AT5G03520 41.667 216 110 4 14 227 13 214 7.10e-49 159
MS.gene051247.t1 AT4G19640 43.137 153 87 0 18 170 12 164 3.30e-44 147
MS.gene051247.t1 AT5G45130 43.137 153 87 0 18 170 12 164 4.09e-43 144
MS.gene051247.t1 AT4G39890 40.000 155 92 1 17 170 10 164 1.23e-42 144
MS.gene051247.t1 AT1G43890 43.617 188 103 3 14 199 11 197 1.74e-42 143
MS.gene051247.t1 AT1G43890 43.617 188 103 3 14 199 11 197 1.74e-42 143
MS.gene051247.t1 AT1G43890 43.617 188 103 3 14 199 11 197 1.74e-42 143
MS.gene051247.t1 AT2G22290 39.610 154 93 0 17 170 10 163 2.48e-42 142
MS.gene051247.t1 AT5G10260 38.961 154 94 0 17 170 10 163 2.53e-42 142
MS.gene051247.t1 AT5G45130 43.046 151 86 0 20 170 22 172 3.45e-42 142
MS.gene051247.t1 AT2G44610 40.260 154 92 0 17 170 10 163 1.34e-41 140
MS.gene051247.t1 AT4G35860 51.667 120 58 0 58 177 2 121 2.58e-41 139
MS.gene051247.t1 AT5G64990 36.646 161 102 0 17 177 8 168 1.40e-39 135
MS.gene051247.t1 AT4G09720 38.164 207 107 6 16 215 8 200 1.91e-39 135
MS.gene051247.t1 AT5G03530 38.636 220 117 5 10 227 7 210 4.44e-39 134
MS.gene051247.t1 AT5G03530 38.636 220 117 5 10 227 7 210 4.44e-39 134
MS.gene051247.t1 AT4G09720 37.264 212 107 6 16 215 8 205 1.18e-38 133
MS.gene051247.t1 AT1G22740 40.000 165 92 3 16 173 8 172 7.62e-38 131
MS.gene051247.t1 AT4G09720 36.239 218 107 6 16 215 8 211 1.35e-37 130
MS.gene051247.t1 AT1G52280 41.358 162 88 3 16 170 8 169 2.38e-37 130
MS.gene051247.t1 AT3G18820 41.975 162 87 3 16 170 8 169 3.77e-37 129
MS.gene051247.t1 AT1G49300 40.719 167 92 3 16 175 8 174 6.89e-37 129
MS.gene051247.t1 AT1G49300 40.719 167 92 3 16 175 8 174 6.89e-37 129
MS.gene051247.t1 AT5G64990 35.119 168 102 1 17 177 8 175 7.72e-37 129
MS.gene051247.t1 AT5G03520 39.106 179 93 4 51 227 40 204 1.06e-36 128
MS.gene051247.t1 AT3G16100 41.358 162 88 3 16 170 8 169 1.22e-36 128
MS.gene051247.t1 AT4G19640 42.857 126 72 0 18 143 12 137 4.17e-35 122
MS.gene051247.t1 AT2G21880 39.394 165 93 3 16 173 9 173 5.16e-35 124
MS.gene051247.t1 AT4G19640 36.158 177 107 2 18 189 12 187 6.57e-35 123
MS.gene051247.t1 AT3G09910 42.945 163 90 3 10 170 7 168 1.58e-30 112
MS.gene051247.t1 AT3G09910 42.945 163 90 3 10 170 7 168 1.58e-30 112
MS.gene051247.t1 AT3G09910 42.945 163 90 3 10 170 7 168 1.58e-30 112
MS.gene051247.t1 AT3G09910 42.945 163 90 3 10 170 7 168 1.83e-30 112
MS.gene051247.t1 AT3G09910 42.945 163 90 3 10 170 7 168 1.83e-30 112
MS.gene051247.t1 AT5G39620 34.862 218 114 8 17 225 6 204 3.32e-30 111
MS.gene051247.t1 AT5G46025 51.961 102 48 1 78 178 6 107 2.23e-28 103
MS.gene051247.t1 AT5G55080 34.161 161 103 2 17 177 14 171 2.25e-28 107
MS.gene051247.t1 AT4G09720 36.667 180 93 6 43 215 1 166 8.99e-28 104
MS.gene051247.t1 AT4G09720 36.667 180 93 6 43 215 1 166 8.99e-28 104
MS.gene051247.t1 AT4G09720 36.667 180 93 6 43 215 1 166 8.99e-28 104
MS.gene051247.t1 AT2G21880 37.162 148 86 3 33 173 1 148 2.04e-26 101
MS.gene051247.t1 AT2G21880 37.162 148 86 3 33 173 1 148 2.04e-26 101
MS.gene051247.t1 AT2G21880 34.545 165 93 4 16 173 9 165 3.24e-25 98.6
MS.gene051247.t1 AT5G20020 31.765 170 112 4 9 177 5 171 9.10e-24 95.1
MS.gene051247.t1 AT5G20010 31.765 170 112 4 9 177 5 171 1.15e-23 95.1
MS.gene051247.t1 AT5G55190 31.765 170 112 4 9 177 5 171 1.17e-23 94.7
MS.gene051247.t1 AT2G44690 34.731 167 95 5 16 170 18 182 1.14e-21 89.4
MS.gene051247.t1 AT4G35020 32.335 167 99 6 16 170 6 170 4.58e-18 79.7
MS.gene051247.t1 AT4G35020 32.335 167 99 6 16 170 6 170 4.58e-18 79.7
MS.gene051247.t1 AT4G35020 32.335 167 99 6 16 170 6 170 4.58e-18 79.7
MS.gene051247.t1 AT3G51300 32.121 165 98 6 18 170 8 170 2.84e-17 77.4
MS.gene051247.t1 AT1G20090 31.138 167 101 6 16 170 5 169 6.38e-17 76.3
MS.gene051247.t1 AT4G28950 30.909 165 102 5 16 170 6 168 7.49e-17 76.6
MS.gene051247.t1 AT3G48040 30.539 167 102 5 16 170 8 172 7.98e-17 76.3
MS.gene051247.t1 AT1G75840 30.539 167 102 6 16 170 6 170 1.00e-16 75.9
MS.gene051247.t1 AT5G45970 30.539 167 102 5 16 170 6 170 1.04e-16 75.9
MS.gene051247.t1 AT5G62880 30.539 167 102 5 16 170 8 172 1.08e-16 76.3
MS.gene051247.t1 AT2G17800 31.138 167 101 6 16 170 6 170 4.38e-16 74.3
MS.gene051247.t1 AT2G17800 31.138 167 101 6 16 170 6 170 4.38e-16 74.3
MS.gene051247.t1 AT4G35950 30.769 169 99 6 16 170 6 170 4.95e-16 73.9
MS.gene051247.t1 AT5G62880 30.968 155 93 5 18 160 10 162 1.55e-15 72.4
MS.gene051247.t1 AT3G48040 30.573 157 95 5 16 160 8 162 1.96e-15 72.0
MS.gene051247.t1 AT4G35020 33.333 114 73 3 18 130 8 119 5.77e-15 70.1
MS.gene051247.t1 AT4G35020 33.333 114 73 3 18 130 8 119 5.77e-15 70.1
MS.gene051247.t1 AT4G08190 48.438 64 30 1 107 170 67 127 1.75e-13 65.5

Find 37 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATGGACATGAACGAAAT+TGG 0.196371 8.2:+62909687 MS.gene051247:CDS
TTTGACCAAGACTGTTCTTA+TGG 0.268890 8.2:+62908076 MS.gene051247:CDS
ATTTGAGGGAACAAAATTAT+TGG 0.279920 8.2:+62909727 MS.gene051247:CDS
GGCTCAGTTTCAAGGTGATT+TGG 0.287683 8.2:+62907920 MS.gene051247:CDS
GCTTGTCAAGGCTCAGATTT+GGG 0.360973 8.2:+62908106 MS.gene051247:CDS
CTTCCTCGATAGGCACTTCT+CGG 0.362301 8.2:-62909532 None:intergenic
AGCTTGTCAAGGCTCAGATT+TGG 0.364225 8.2:+62908105 MS.gene051247:CDS
AACATAGCTGTCATGCTTGT+TGG 0.371700 8.2:+62909485 MS.gene051247:CDS
TTGAAATCTAAAGCTACAAT+TGG 0.411996 8.2:+62908044 MS.gene051247:CDS
TTTCAATATGGTTGAAGGTA+TGG 0.432363 8.2:-62909427 None:intergenic
ATGTTCAAGGTTGTTATGAT+TGG 0.440532 8.2:+62907963 MS.gene051247:CDS
GGGTATTGATTATATGTTCA+AGG 0.446874 8.2:+62907950 MS.gene051247:CDS
GCATATTACAGAGGTGCAAC+TGG 0.448807 8.2:+62909374 MS.gene051247:CDS
AATGTAGAACCAGCTTTCCT+TGG 0.453949 8.2:+62909617 MS.gene051247:CDS
AAGTCTTTGGCTTCCTCGAT+AGG 0.469086 8.2:-62909542 None:intergenic
TAAAGTAAATCTTGAATTTG+AGG 0.472846 8.2:+62909712 MS.gene051247:CDS
AAGAGAATGGCTCAGTTTCA+AGG 0.475792 8.2:+62907912 None:intergenic
AGATGGACATGAACGAAATT+GGG 0.476402 8.2:+62909688 MS.gene051247:CDS
AAAGTAAATCTTGAATTTGA+GGG 0.497241 8.2:+62909713 MS.gene051247:CDS
ATGGTTGAAGGTATGGCGCT+TGG 0.524601 8.2:-62909420 None:intergenic
CCTTCAACCATATTGAAAAG+TGG 0.524738 8.2:+62909432 MS.gene051247:CDS
GAGAGAAGACCAAGGAAAGC+TGG 0.526036 8.2:-62909626 None:intergenic
ATGATCCATAAGAACAGTCT+TGG 0.534296 8.2:-62908081 None:intergenic
GGGATACTGCTGGTCAAGAA+AGG 0.539209 8.2:+62908126 MS.gene051247:CDS
ATGATTGGTGACTCTGGTGT+TGG 0.541897 8.2:+62907978 MS.gene051247:CDS
TCAAGGTGATTTGGATCATG+AGG 0.547424 8.2:+62907929 MS.gene051247:CDS
GTTGTTATGATTGGTGACTC+TGG 0.549166 8.2:+62907972 MS.gene051247:CDS
AATATGCAGTTGTAATTGCT+TGG 0.550879 8.2:-62909358 None:intergenic
AAGAAACACATCACTGCAGA+TGG 0.556898 8.2:+62909671 MS.gene051247:CDS
GCTCAGATTTGGGATACTGC+TGG 0.571910 8.2:+62908116 MS.gene051247:CDS
CAAGGTGATTTGGATCATGA+GGG 0.581854 8.2:+62907930 MS.gene051247:CDS
TATGGATCATAAGCTTGTCA+AGG 0.590505 8.2:+62908094 MS.gene051247:CDS
GCACTTCTCGGATTGAACTC+AGG 0.592554 8.2:-62909520 None:intergenic
AAAGACTTAGCAAAACAGAA+AGG 0.614557 8.2:+62909557 MS.gene051247:CDS
AATCCGAGAAGTGCCTATCG+AGG 0.678608 8.2:+62909529 MS.gene051247:CDS
ATTACAACTGCATATTACAG+AGG 0.695575 8.2:+62909365 MS.gene051247:CDS
ATATTTGTGAGAGAAGACCA+AGG 0.791204 8.2:-62909634 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATAGTAAAAATGTT+TGG + chr8.2:62908325-62908344 MS.gene051247:intron 10.0%
!! AAATTGACAAAAGAAAATTT+AGG - chr8.2:62908153-62908172 None:intergenic 15.0%
!!! AAAATGTGAATTATTTTCAT+TGG + chr8.2:62908190-62908209 MS.gene051247:intron 15.0%
!!! ATAAAATCTTTTATTGACAT+TGG - chr8.2:62908403-62908422 None:intergenic 15.0%
!!! ATGTTATTTTATGTTGAATT+TGG + chr8.2:62908373-62908392 MS.gene051247:intron 15.0%
!!! ATTTTAAATTTGATACATTC+AGG + chr8.2:62909177-62909196 MS.gene051247:intron 15.0%
!!! TAAAATCTTTTATTGACATT+GGG - chr8.2:62908402-62908421 None:intergenic 15.0%
!!! TTGTTAGTTTATGTTAAATT+TGG + chr8.2:62908694-62908713 MS.gene051247:intron 15.0%
!!! TTTTAAATTTGATACATTCA+GGG + chr8.2:62909178-62909197 MS.gene051247:intron 15.0%
!! AAAGTAAATCTTGAATTTGA+GGG + chr8.2:62909713-62909732 MS.gene051247:CDS 20.0%
!! TAAAGTAAATCTTGAATTTG+AGG + chr8.2:62909712-62909731 MS.gene051247:CDS 20.0%
!! TGTCACAAAATAAATGAATT+CGG - chr8.2:62908619-62908638 None:intergenic 20.0%
!! TGTTGCATCATATATAAATT+TGG - chr8.2:62908911-62908930 None:intergenic 20.0%
!!! CAAACTTACAAATATTTTCA+CGG - chr8.2:62909050-62909069 None:intergenic 20.0%
! AAACACATTATCATGTCAAT+TGG - chr8.2:62908969-62908988 None:intergenic 25.0%
! AATTGTTCTAATTTCAAGCT+TGG - chr8.2:62908800-62908819 None:intergenic 25.0%
! ATTTGAGGGAACAAAATTAT+TGG + chr8.2:62909727-62909746 MS.gene051247:CDS 25.0%
! CGTGAAAATATTTGTAAGTT+TGG + chr8.2:62909048-62909067 MS.gene051247:intron 25.0%
! TTCATAAGCAAACTCAAAAT+TGG + chr8.2:62908819-62908838 MS.gene051247:intron 25.0%
!! TTGAAATCTAAAGCTACAAT+TGG + chr8.2:62908044-62908063 MS.gene051247:CDS 25.0%
!! TTTGTAAAGTTGATTTACCA+GGG + chr8.2:62908486-62908505 MS.gene051247:intron 25.0%
!!! CATTTATTTTGTGACATAGT+GGG + chr8.2:62908623-62908642 MS.gene051247:intron 25.0%
!!! TCATTTATTTTGTGACATAG+TGG + chr8.2:62908622-62908641 MS.gene051247:intron 25.0%
AAAGACTTAGCAAAACAGAA+AGG + chr8.2:62909557-62909576 MS.gene051247:CDS 30.0%
AATATGCAGTTGTAATTGCT+TGG - chr8.2:62909361-62909380 None:intergenic 30.0%
AATTACTAACAGAATCGACT+TGG + chr8.2:62909142-62909161 MS.gene051247:intron 30.0%
ACTAACAAAAGACACATTTG+AGG - chr8.2:62909107-62909126 None:intergenic 30.0%
ATGTTCAAGGTTGTTATGAT+TGG + chr8.2:62907963-62907982 MS.gene051247:CDS 30.0%
ATTACAACTGCATATTACAG+AGG + chr8.2:62909365-62909384 MS.gene051247:CDS 30.0%
CGATTCTGTTAGTAATTCAA+TGG - chr8.2:62909139-62909158 None:intergenic 30.0%
GACATGCATAATGTATTTGA+AGG - chr8.2:62909296-62909315 None:intergenic 30.0%
TATATATGATGCAACACAGT+GGG + chr8.2:62908915-62908934 MS.gene051247:intron 30.0%
TTATATATGATGCAACACAG+TGG + chr8.2:62908914-62908933 MS.gene051247:intron 30.0%
TTTCAATATGGTTGAAGGTA+TGG - chr8.2:62909430-62909449 None:intergenic 30.0%
! AACACGAGTAAACATCATTT+TGG - chr8.2:62909236-62909255 None:intergenic 30.0%
! ACACGAGTAAACATCATTTT+GGG - chr8.2:62909235-62909254 None:intergenic 30.0%
! ATTACTAACAGAATCGACTT+GGG + chr8.2:62909143-62909162 MS.gene051247:intron 30.0%
! GAAAATCTCAGCTTTTGAAT+AGG + chr8.2:62908000-62908019 MS.gene051247:CDS 30.0%
! GTTTGTAAAGTTGATTTACC+AGG + chr8.2:62908485-62908504 MS.gene051247:intron 30.0%
! TTTCTGTTTTGCTAAGTCTT+TGG - chr8.2:62909558-62909577 None:intergenic 30.0%
! TTTTTGGATTTTTGACACTC+TGG - chr8.2:62909767-62909786 None:intergenic 30.0%
!! GGGTATTGATTATATGTTCA+AGG + chr8.2:62907950-62907969 MS.gene051247:CDS 30.0%
!!! TGCTTTTGAGTTTGATCATA+AGG - chr8.2:62908527-62908546 None:intergenic 30.0%
AGATGGACATGAACGAAATT+GGG + chr8.2:62909688-62909707 MS.gene051247:CDS 35.0%
ATATATGATGCAACACAGTG+GGG + chr8.2:62908916-62908935 MS.gene051247:intron 35.0%
ATATTTGTGAGAGAAGACCA+AGG - chr8.2:62909637-62909656 None:intergenic 35.0%
ATGATCCATAAGAACAGTCT+TGG - chr8.2:62908084-62908103 None:intergenic 35.0%
CCTTCAACCATATTGAAAAG+TGG + chr8.2:62909432-62909451 MS.gene051247:CDS 35.0%
CTAACTAACAAGAGACACAT+TGG - chr8.2:62909078-62909097 None:intergenic 35.0%
CTATGCAATCTTTGACAGTA+GGG - chr8.2:62908723-62908742 None:intergenic 35.0%
GTCATCTAATCTTGATGCAA+CGG + chr8.2:62908549-62908568 MS.gene051247:intron 35.0%
TATGGATCATAAGCTTGTCA+AGG + chr8.2:62908094-62908113 MS.gene051247:CDS 35.0%
TCTATGCAATCTTTGACAGT+AGG - chr8.2:62908724-62908743 None:intergenic 35.0%
TTATGCATTCACAGAGTCAA+CGG + chr8.2:62908419-62908438 MS.gene051247:intron 35.0%
TTTGACCAAGACTGTTCTTA+TGG + chr8.2:62908076-62908095 MS.gene051247:CDS 35.0%
! GAGTCGCAATTCAAAGTTTT+TGG - chr8.2:62908862-62908881 None:intergenic 35.0%
! GCAACAACTGAATCTCTTTT+TGG - chr8.2:62909783-62909802 None:intergenic 35.0%
! TTTTGATCCATAAGTACGTG+TGG + chr8.2:62909009-62909028 MS.gene051247:intron 35.0%
!! CAGCTATGTTTTTATCTGCA+TGG - chr8.2:62909475-62909494 None:intergenic 35.0%
!! CCACTTTTCAATATGGTTGA+AGG - chr8.2:62909435-62909454 None:intergenic 35.0%
!! GGTTGTTCTAATTTTAACCC+TGG - chr8.2:62908506-62908525 None:intergenic 35.0%
!! TTACTAACAGAATCGACTTG+GGG + chr8.2:62909144-62909163 MS.gene051247:intron 35.0%
!! TTTGGAAGTTGATGACTTCT+TGG + chr8.2:62908343-62908362 MS.gene051247:intron 35.0%
!!! CATCTAGCCACTTTTCAATA+TGG - chr8.2:62909442-62909461 None:intergenic 35.0%
AACATAGCTGTCATGCTTGT+TGG + chr8.2:62909485-62909504 MS.gene051247:CDS 40.0%
AAGAAACACATCACTGCAGA+TGG + chr8.2:62909671-62909690 MS.gene051247:CDS 40.0%
AATGTAGAACCAGCTTTCCT+TGG + chr8.2:62909617-62909636 MS.gene051247:CDS 40.0%
AGCTTGGAATCAAAGTCATC+CGG - chr8.2:62908784-62908803 None:intergenic 40.0%
ATAATGTTGCCATTCGTGAC+AGG + chr8.2:62909333-62909352 MS.gene051247:intron 40.0%
CAGAGCCATCAAATCTTGAT+CGG - chr8.2:62908454-62908473 None:intergenic 40.0%
CAGATGGACATGAACGAAAT+TGG + chr8.2:62909687-62909706 MS.gene051247:CDS 40.0%
GACAATGCCTCACACATTTA+TGG + chr8.2:62909209-62909228 MS.gene051247:intron 40.0%
TAGAGCCGATCAAGATTTGA+TGG + chr8.2:62908446-62908465 MS.gene051247:intron 40.0%
TATATGATGCAACACAGTGG+GGG + chr8.2:62908917-62908936 MS.gene051247:intron 40.0%
! CAAGGTGATTTGGATCATGA+GGG + chr8.2:62907930-62907949 MS.gene051247:CDS 40.0%
! GTTGTTATGATTGGTGACTC+TGG + chr8.2:62907972-62907991 MS.gene051247:CDS 40.0%
! TCAAGGTGATTTGGATCATG+AGG + chr8.2:62907929-62907948 MS.gene051247:CDS 40.0%
! TTTTGGGCCATAAATGTGTG+AGG - chr8.2:62909219-62909238 None:intergenic 40.0%
AGCTTGTCAAGGCTCAGATT+TGG + chr8.2:62908105-62908124 MS.gene051247:CDS 45.0%
GACAATGCCACACGTACTTA+TGG - chr8.2:62909019-62909038 None:intergenic 45.0%
GATTCACAGTGTTAGCAGCT+TGG + chr8.2:62908742-62908761 MS.gene051247:intron 45.0%
GCTTGTCAAGGCTCAGATTT+GGG + chr8.2:62908106-62908125 MS.gene051247:CDS 45.0%
GGCTCAGTTTCAAGGTGATT+TGG + chr8.2:62907920-62907939 MS.gene051247:CDS 45.0%
! AAGTCTTTGGCTTCCTCGAT+AGG - chr8.2:62909545-62909564 None:intergenic 45.0%
! ATGATTGGTGACTCTGGTGT+TGG + chr8.2:62907978-62907997 MS.gene051247:CDS 45.0%
! GCATATTACAGAGGTGCAAC+TGG + chr8.2:62909374-62909393 MS.gene051247:CDS 45.0%
!!! TAAAATTTTATTATTTTATG+TGG + chr8.2:62908232-62908251 MS.gene051247:intron 5.0%
CTTCCTCGATAGGCACTTCT+CGG - chr8.2:62909535-62909554 None:intergenic 50.0%
GAGAGAAGACCAAGGAAAGC+TGG - chr8.2:62909629-62909648 None:intergenic 50.0%
GCACTTCTCGGATTGAACTC+AGG - chr8.2:62909523-62909542 None:intergenic 50.0%
GGGATACTGCTGGTCAAGAA+AGG + chr8.2:62908126-62908145 MS.gene051247:CDS 50.0%
TGCTTGGTACCTGTCACGAA+TGG - chr8.2:62909345-62909364 None:intergenic 50.0%
TGGAGCCATTGGATCGATAC+CGG + chr8.2:62908762-62908781 MS.gene051247:intron 50.0%
TGTTAGCAGCTTGGAGCCAT+TGG + chr8.2:62908751-62908770 MS.gene051247:intron 50.0%
! ATGGTTGAAGGTATGGCGCT+TGG - chr8.2:62909423-62909442 None:intergenic 50.0%
! GCTCAGATTTGGGATACTGC+TGG + chr8.2:62908116-62908135 MS.gene051247:CDS 50.0%
!! AATCCGAGAAGTGCCTATCG+AGG + chr8.2:62909529-62909548 MS.gene051247:CDS 50.0%
!! GTCATCCGGTATCGATCCAA+TGG - chr8.2:62908770-62908789 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 62907918 62909814 62907918 ID=MS.gene051247
chr8.2 mRNA 62907918 62909814 62907918 ID=MS.gene051247.t1;Parent=MS.gene051247
chr8.2 exon 62907918 62908147 62907918 ID=MS.gene051247.t1.exon1;Parent=MS.gene051247.t1
chr8.2 CDS 62907918 62908147 62907918 ID=cds.MS.gene051247.t1;Parent=MS.gene051247.t1
chr8.2 exon 62909355 62909814 62909355 ID=MS.gene051247.t1.exon2;Parent=MS.gene051247.t1
chr8.2 CDS 62909355 62909814 62909355 ID=cds.MS.gene051247.t1;Parent=MS.gene051247.t1
Gene Sequence

>MS.gene051247

ATGGCTCAGTTTCAAGGTGATTTGGATCATGAGGGTATTGATTATATGTTCAAGGTTGTTATGATTGGTGACTCTGGTGTTGGAAAATCTCAGCTTTTGAATAGGTTTGTTAGAAATGAGTTTCATTTGAAATCTAAAGCTACAATTGGTGTTGAGTTTTTGACCAAGACTGTTCTTATGGATCATAAGCTTGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTCCTAAATTTTCTTTTGTCAATTTTTTTTTGTTTATTTATCAAAATGTGAATTATTTTCATTGGATTTTGTTGTATACTGTACTAAAATTTTATTATTTTATGTGGTTAATAATAAAGAATTTAACTTAGATCTAATAAGTTAAGATCTGATATTTTAGACAGCATGTTTTTTTAATATAATATAGTAAAAATGTTTGGAAGTTGATGACTTCTTGGTTTCTTGATGTTATTTTATGTTGAATTTGGATTCCCAATGTCAATAAAAGATTTTATGCATTCACAGAGTCAACGGTGTATAGAGCCGATCAAGATTTGATGGCTCTGAATTTGAGTTTGTTTGTAAAGTTGATTTACCAGGGTTAAAATTAGAACAACCTTATGATCAAACTCAAAAGCAGAGTCATCTAATCTTGATGCAACGGCATTGAACTGCTGACTTGTGATTGCATTGAATATTGTAGAGAATCCGAATTCATTTATTTTGTGACATAGTGGGACTGAGTGTATAATGAATTATAAATTTAACTAATTTGCAAATTTTCTGTTGTTAGTTTATGTTAAATTTGGATTCCCTACTGTCAAAGATTGCATAGATTCACAGTGTTAGCAGCTTGGAGCCATTGGATCGATACCGGATGACTTTGATTCCAAGCTTGAAATTAGAACAATTTCATAAGCAAACTCAAAATTGGAATCGTCTGATCTTGATCCAAAAACTTTGAATTGCGACTCTGAATGTGTTGAACATTGCAGAGAGTCCAAATTTATATATGATGCAACACAGTGGGGGAATGTATGATTAGTATAACTAGTTTACCAATTGACATGATAATGTGTTTTACTATTGAGTGAACACTCGTTTTGATCCATAAGTACGTGTGGCATTGTCATAATAGTCCGTGAAAATATTTGTAAGTTTGGTTCTCCAATGTGTCTCTTGTTAGTTAGTTTAGTCCTCAAATGTGTCTTTTGTTAGTCAATTTGATCCATTGAATTACTAACAGAATCGACTTGGGGATATCTTTTGATTTTAAATTTGATACATTCAGGGACTATACTGACAATGCCTCACACATTTATGGCCCAAAATGATGTTTACTCGTGTTTTATTAGTTAGATTGCTGATTTTGTTCTCAAGACTGTCCTTCAAATACATTATGCATGTCAATTGCGTTTTCAAGTGATAATGTTGCCATTCGTGACAGGTACCAAGCAATTACAACTGCATATTACAGAGGTGCAACTGGTGCATTGCTCACATATGACATAACCAAGCGCCATACCTTCAACCATATTGAAAAGTGGCTAGATGAACTACATAACCATGCAGATAAAAACATAGCTGTCATGCTTGTTGGCAACAAGTCTGACCTGAGTTCAATCCGAGAAGTGCCTATCGAGGAAGCCAAAGACTTAGCAAAACAGAAAGGTCTCTACTTCATTGAGACATCAGCACTCGACTCAAGCAATGTAGAACCAGCTTTCCTTGGTCTTCTCTCACAAATATATGTAACAATGAGTAAGAAACACATCACTGCAGATGGACATGAACGAAATTGGGATAAAGTAAATCTTGAATTTGAGGGAACAAAATTATTGGTCTCGTCGCAAGAACCAGAGTGTCAAAAATCCAAAAAGAGATTCAGTTGTTGCAGTGTTTTTTAG

Protein sequence

>MS.gene051247.t1

MAQFQGDLDHEGIDYMFKVVMIGDSGVGKSQLLNRFVRNEFHLKSKATIGVEFLTKTVLMDHKLVKAQIWDTAGQERYQAITTAYYRGATGALLTYDITKRHTFNHIEKWLDELHNHADKNIAVMLVGNKSDLSSIREVPIEEAKDLAKQKGLYFIETSALDSSNVEPAFLGLLSQIYVTMSKKHITADGHERNWDKVNLEFEGTKLLVSSQEPECQKSKKRFSCCSVF