Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90652.t1 | XP_013464918.1 | 92.9 | 686 | 48 | 1 | 1 | 685 | 1 | 686 | 0.00E+00 | 1165.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90652.t1 | Q3E7D0 | 69.6 | 710 | 186 | 6 | 2 | 685 | 4 | 709 | 1.9e-257 | 889.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90652.t1 | A0A072VC14 | 92.9 | 686 | 48 | 1 | 1 | 685 | 1 | 686 | 0.0e+00 | 1165.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene046435 | MS.gene90652 | PPI |
MS.gene90652 | MS.gene065219 | PPI |
MS.gene90652 | MS.gene027793 | PPI |
MS.gene90652 | MS.gene069113 | PPI |
MS.gene90652 | MS.gene070688 | PPI |
MS.gene90652 | MS.gene008938 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90652.t1 | MTR_2g084895 | 95.918 | 686 | 27 | 1 | 1 | 685 | 1 | 686 | 0.0 | 1317 |
MS.gene90652.t1 | MTR_4g055290 | 76.412 | 708 | 124 | 11 | 1 | 685 | 1 | 688 | 0.0 | 999 |
MS.gene90652.t1 | MTR_2g103510 | 66.717 | 664 | 147 | 9 | 28 | 685 | 4 | 599 | 0.0 | 821 |
MS.gene90652.t1 | MTR_8g068550 | 58.412 | 529 | 218 | 1 | 157 | 685 | 237 | 763 | 0.0 | 670 |
MS.gene90652.t1 | MTR_5g032020 | 47.679 | 711 | 300 | 9 | 23 | 685 | 19 | 705 | 0.0 | 634 |
MS.gene90652.t1 | MTR_8g086520 | 37.187 | 519 | 288 | 5 | 163 | 677 | 37 | 521 | 8.38e-116 | 358 |
MS.gene90652.t1 | MTR_3g080390 | 39.189 | 518 | 276 | 6 | 165 | 677 | 34 | 517 | 1.19e-115 | 357 |
MS.gene90652.t1 | MTR_2g016460 | 35.509 | 521 | 298 | 5 | 161 | 677 | 35 | 521 | 2.95e-107 | 335 |
MS.gene90652.t1 | MTR_8g086520 | 37.418 | 457 | 250 | 5 | 163 | 617 | 37 | 459 | 2.74e-101 | 318 |
MS.gene90652.t1 | MTR_8g063220 | 34.549 | 521 | 301 | 5 | 163 | 677 | 44 | 530 | 6.24e-101 | 319 |
MS.gene90652.t1 | MTR_4g106750 | 34.549 | 521 | 301 | 5 | 163 | 677 | 43 | 529 | 1.24e-99 | 316 |
MS.gene90652.t1 | MTR_1g021120 | 35.922 | 515 | 288 | 9 | 165 | 673 | 62 | 540 | 4.32e-99 | 315 |
MS.gene90652.t1 | MTR_3g078270 | 34.799 | 523 | 297 | 6 | 163 | 677 | 43 | 529 | 1.65e-98 | 313 |
MS.gene90652.t1 | MTR_3g103230 | 33.589 | 521 | 303 | 6 | 163 | 677 | 68 | 551 | 1.27e-96 | 309 |
MS.gene90652.t1 | MTR_4g106750 | 34.241 | 514 | 298 | 5 | 170 | 677 | 1 | 480 | 1.15e-95 | 304 |
MS.gene90652.t1 | MTR_5g035180 | 32.759 | 522 | 310 | 5 | 163 | 677 | 48 | 535 | 7.56e-95 | 303 |
MS.gene90652.t1 | MTR_8g086520 | 36.406 | 434 | 240 | 5 | 246 | 677 | 6 | 405 | 6.01e-88 | 281 |
MS.gene90652.t1 | MTR_8g086520 | 37.958 | 382 | 217 | 3 | 163 | 542 | 37 | 400 | 6.16e-87 | 278 |
MS.gene90652.t1 | MTR_1g106085 | 32.264 | 530 | 314 | 8 | 156 | 677 | 32 | 524 | 5.49e-86 | 280 |
MS.gene90652.t1 | MTR_5g022110 | 32.505 | 523 | 310 | 6 | 161 | 677 | 59 | 544 | 3.71e-85 | 278 |
MS.gene90652.t1 | MTR_4g106750 | 32.170 | 401 | 234 | 4 | 281 | 677 | 11 | 377 | 1.45e-63 | 216 |
MS.gene90652.t1 | MTR_8g086535 | 37.374 | 99 | 62 | 0 | 444 | 542 | 18 | 116 | 8.85e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene90652.t1 | AT2G27810 | 71.635 | 691 | 169 | 6 | 21 | 685 | 20 | 709 | 0.0 | 950 |
MS.gene90652.t1 | AT2G27810 | 69.231 | 715 | 169 | 7 | 21 | 685 | 20 | 733 | 0.0 | 938 |
MS.gene90652.t1 | AT2G27810 | 70.053 | 571 | 144 | 6 | 21 | 565 | 20 | 589 | 0.0 | 743 |
MS.gene90652.t1 | AT2G27810 | 68.321 | 524 | 139 | 6 | 21 | 518 | 20 | 542 | 0.0 | 659 |
MS.gene90652.t1 | AT4G38050 | 49.118 | 680 | 317 | 6 | 14 | 677 | 38 | 704 | 0.0 | 621 |
MS.gene90652.t1 | AT2G34190 | 35.838 | 519 | 295 | 5 | 163 | 677 | 37 | 521 | 2.30e-112 | 349 |
MS.gene90652.t1 | AT2G05760 | 38.610 | 518 | 279 | 7 | 165 | 677 | 34 | 517 | 6.34e-112 | 347 |
MS.gene90652.t1 | AT1G60030 | 36.660 | 521 | 290 | 5 | 163 | 677 | 49 | 535 | 1.11e-106 | 334 |
MS.gene90652.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 163 | 677 | 43 | 529 | 1.25e-101 | 321 |
MS.gene90652.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 163 | 677 | 43 | 529 | 1.25e-101 | 321 |
MS.gene90652.t1 | AT5G62890 | 35.509 | 521 | 296 | 5 | 163 | 677 | 43 | 529 | 1.25e-101 | 321 |
MS.gene90652.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 163 | 677 | 39 | 525 | 1.67e-100 | 318 |
MS.gene90652.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 163 | 677 | 39 | 525 | 1.67e-100 | 318 |
MS.gene90652.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 163 | 677 | 39 | 525 | 1.67e-100 | 318 |
MS.gene90652.t1 | AT5G49990 | 35.125 | 521 | 298 | 5 | 163 | 677 | 39 | 525 | 1.67e-100 | 318 |
MS.gene90652.t1 | AT5G62890 | 38.955 | 421 | 237 | 3 | 163 | 581 | 43 | 445 | 1.19e-95 | 304 |
MS.gene90652.t1 | AT1G49960 | 35.755 | 523 | 296 | 6 | 161 | 677 | 35 | 523 | 7.10e-95 | 303 |
MS.gene90652.t1 | AT1G10540 | 32.955 | 528 | 303 | 8 | 163 | 677 | 47 | 536 | 8.80e-94 | 301 |
MS.gene90652.t1 | AT2G26510 | 35.741 | 526 | 289 | 9 | 161 | 676 | 59 | 545 | 2.25e-92 | 297 |
MS.gene90652.t1 | AT1G65550 | 32.895 | 532 | 304 | 7 | 161 | 677 | 45 | 538 | 2.72e-90 | 291 |
MS.gene90652.t1 | AT1G10540 | 34.890 | 364 | 206 | 6 | 163 | 517 | 47 | 388 | 2.57e-68 | 229 |
MS.gene90652.t1 | AT2G26510 | 37.088 | 364 | 199 | 6 | 161 | 517 | 59 | 399 | 8.56e-65 | 220 |
MS.gene90652.t1 | AT2G26510 | 37.607 | 351 | 189 | 6 | 161 | 504 | 59 | 386 | 4.07e-63 | 216 |
MS.gene90652.t1 | AT5G25420 | 30.353 | 425 | 204 | 8 | 161 | 581 | 57 | 393 | 2.73e-53 | 189 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGCATTATGTTTCTATATT+AGG | 0.169100 | 2.3:+12904704 | MS.gene90652:CDS |
TACAATTGCTGTGACTAAAA+TGG | 0.195962 | 2.3:+12908912 | MS.gene90652:CDS |
GGCACTGACAAGTTGGAATT+TGG | 0.213465 | 2.3:-12911423 | None:intergenic |
ACCTGATTTGCAGGTTCCTT+TGG | 0.236656 | 2.3:+12907716 | MS.gene90652:intron |
TGTTTATCTGGCTCCAGTTT+TGG | 0.253065 | 2.3:+12905009 | MS.gene90652:CDS |
GGTCTCTGGGGTACTGGAAC+TGG | 0.268292 | 2.3:+12908862 | MS.gene90652:CDS |
GGGTTCATTGCTTCAATTCC+TGG | 0.274645 | 2.3:+12911231 | MS.gene90652:CDS |
GGAAGGTCTTTCTAGTGTTT+TGG | 0.275832 | 2.3:+12908837 | MS.gene90652:CDS |
TCTCGCAATATCATAATAAT+TGG | 0.281920 | 2.3:+12911342 | MS.gene90652:CDS |
CTTCGTAAGATATCTGTTCT+TGG | 0.293844 | 2.3:+12907562 | MS.gene90652:CDS |
GAGACCAATGCCGGTGATTC+TGG | 0.294315 | 2.3:+12904088 | MS.gene90652:CDS |
TTGGCTGGTCTCTGGGGTAC+TGG | 0.299524 | 2.3:+12908856 | MS.gene90652:CDS |
CCCGCATACTTTCAACAATA+TGG | 0.308753 | 2.3:+12911393 | MS.gene90652:CDS |
GGGCTAAGAAAACCGGTTTC+AGG | 0.311969 | 2.3:+12904050 | MS.gene90652:CDS |
TTGGTCTCGCCGGAGAATTT+TGG | 0.313765 | 2.3:-12904073 | None:intergenic |
CATTGGCAACCCATAGTCTT+TGG | 0.316812 | 2.3:-12912524 | None:intergenic |
TACCGAACGTTGGCGAGGTT+CGG | 0.317187 | 2.3:-12903972 | None:intergenic |
CCTGATTTGCAGGTTCCTTT+GGG | 0.322059 | 2.3:+12907717 | MS.gene90652:intron |
AAACATACCTGCCTCAAATA+TGG | 0.329584 | 2.3:+12907812 | MS.gene90652:CDS |
TCCTGTCTTCCACTGGAAAA+TGG | 0.332720 | 2.3:+12907950 | MS.gene90652:CDS |
TAAACTCATACCTTACTAAC+AGG | 0.333726 | 2.3:-12905810 | None:intergenic |
ATTCCTGGAGTCATGGTTGC+TGG | 0.335456 | 2.3:+12911246 | MS.gene90652:CDS |
GGGCCTTTCCAAAGCAAATA+TGG | 0.336173 | 2.3:+12911480 | MS.gene90652:CDS |
CCTGCTATTGCCAAAGACTA+TGG | 0.347150 | 2.3:+12912514 | MS.gene90652:CDS |
CTCAATCTCATCCGTGGATT+CGG | 0.353892 | 2.3:+12907995 | MS.gene90652:CDS |
AACCAGTTCCACCTTCTTCA+TGG | 0.355404 | 2.3:+12904029 | MS.gene90652:CDS |
ACCGAACGTTGGCGAGGTTC+GGG | 0.358868 | 2.3:-12903971 | None:intergenic |
TTTGCAGGTTCCTTTGGGTT+TGG | 0.367091 | 2.3:+12907722 | MS.gene90652:intron |
TCAACTGCGCTCTTCGTGTC+TGG | 0.372892 | 2.3:+12904923 | MS.gene90652:CDS |
CTTTGGGTTTGGCAATTACA+TGG | 0.373887 | 2.3:+12907733 | MS.gene90652:CDS |
TCAGTTCCCATTGGTGTGTA+TGG | 0.374735 | 2.3:+12904677 | MS.gene90652:CDS |
ACACGACCTGCTTCGAGATC+GGG | 0.377975 | 2.3:-12904157 | None:intergenic |
ACTTGTCATTGTTCCTGCTA+TGG | 0.384370 | 2.3:+12904745 | MS.gene90652:CDS |
CTGGTCTCCTCTGCTTTATG+TGG | 0.387107 | 2.3:+12911265 | MS.gene90652:CDS |
GTCACAACCTTTGTAGTTGT+AGG | 0.394524 | 2.3:-12907787 | None:intergenic |
GCTTTCTTGCTGACCGAAGC+TGG | 0.394590 | 2.3:+12907762 | MS.gene90652:CDS |
CGAGGTTCGGGTTCGGACAT+TGG | 0.396581 | 2.3:-12903959 | None:intergenic |
GTCCAACTGCAGCAATGGTT+GGG | 0.397694 | 2.3:-12907358 | None:intergenic |
ATACCCCTCCATATTTGCTT+TGG | 0.399659 | 2.3:-12911488 | None:intergenic |
CTTGTCATTGTTCCTGCTAT+GGG | 0.400087 | 2.3:+12904746 | MS.gene90652:CDS |
GGGGTTCTTAGTCGCGGAAT+TGG | 0.401025 | 2.3:+12908811 | MS.gene90652:CDS |
TCTTAGTCGCGGAATTGGTC+TGG | 0.401963 | 2.3:+12908816 | MS.gene90652:CDS |
ACAATTGCTGTGACTAAAAT+GGG | 0.412964 | 2.3:+12908913 | MS.gene90652:CDS |
ATTTCCCTATCCATTGCAAT+GGG | 0.414720 | 2.3:+12907923 | MS.gene90652:CDS |
TTCACTGCAGGCGGTGGAAG+CGG | 0.419366 | 2.3:-12904229 | None:intergenic |
AAGCCGCAGAGCAGTTCAAT+TGG | 0.419441 | 2.3:+12908936 | MS.gene90652:CDS |
GCAGCGAAAATATCGTGTTT+AGG | 0.420690 | 2.3:-12912381 | None:intergenic |
TGGGCAATGCTTACAGCATT+GGG | 0.434766 | 2.3:+12911285 | MS.gene90652:CDS |
GCCCATGAAGAAGGTGGAAC+TGG | 0.436537 | 2.3:-12904031 | None:intergenic |
TCAGCTTCTCTAGACTTAAC+CGG | 0.436599 | 2.3:-12904127 | None:intergenic |
AAAATCCGACCAACTCTCAT+TGG | 0.436965 | 2.3:-12912541 | None:intergenic |
GGTGGAACTGGTTTAGCTTC+CGG | 0.436991 | 2.3:-12904019 | None:intergenic |
GCATCTAGACCTCCAACTCC+TGG | 0.438157 | 2.3:+12908790 | MS.gene90652:CDS |
TCTCTCCCTTTCTTCACTGC+AGG | 0.440249 | 2.3:-12904241 | None:intergenic |
ACCTGCTTCGAGATCGGGAT+TGG | 0.448060 | 2.3:-12904152 | None:intergenic |
GTGGGCAATGCTTACAGCAT+TGG | 0.448946 | 2.3:+12911284 | MS.gene90652:CDS |
CCTTTCTTCACTGCAGGCGG+TGG | 0.449083 | 2.3:-12904235 | None:intergenic |
GAGTTGATGATTGCCAAAAC+TGG | 0.449602 | 2.3:-12905022 | None:intergenic |
AACACGACCTGCTTCGAGAT+CGG | 0.450640 | 2.3:-12904158 | None:intergenic |
TCCAGGTTGCCCTTGATACA+AGG | 0.452484 | 2.3:+12904977 | MS.gene90652:CDS |
TGCTTCAATTCCTGGAGTCA+TGG | 0.456853 | 2.3:+12911239 | MS.gene90652:CDS |
TTCATTCAGTCCTTGAAACT+CGG | 0.458195 | 2.3:-12905047 | None:intergenic |
GAATTATGTCCCTGTTAGTA+AGG | 0.461216 | 2.3:+12905800 | MS.gene90652:CDS |
CCGTGAGAAGCCACAATGTA+AGG | 0.461940 | 2.3:-12911459 | None:intergenic |
ACGTTGGCGAGGTTCGGGTT+CGG | 0.462008 | 2.3:-12903966 | None:intergenic |
TCTTCATGGGCTAAGAAAAC+CGG | 0.464598 | 2.3:+12904043 | MS.gene90652:CDS |
ATCAACTCACCCGAGTTTCA+AGG | 0.466883 | 2.3:+12905037 | MS.gene90652:CDS |
TCTCGAAGCAGGTCGTGTTA+AGG | 0.467673 | 2.3:+12904162 | MS.gene90652:CDS |
ACCCGAACCTCGCCAACGTT+CGG | 0.469036 | 2.3:+12903970 | MS.gene90652:CDS |
AGCCTCACTATAGCGTAGAT+TGG | 0.473513 | 2.3:-12911313 | None:intergenic |
ATGGTTGTTTCAGTTCCCAT+TGG | 0.474254 | 2.3:+12904668 | MS.gene90652:CDS |
CCCTTGTATCAAGGGCAACC+TGG | 0.474719 | 2.3:-12904978 | None:intergenic |
CGACTAAGAACCCCAGGAGT+TGG | 0.475770 | 2.3:-12908802 | None:intergenic |
CCACCGCCTGCAGTGAAGAA+AGG | 0.475961 | 2.3:+12904235 | MS.gene90652:CDS |
CCGTTTGCTACCGGCGGAGG+AGG | 0.477161 | 2.3:-12904190 | None:intergenic |
AAAAGAAGACCCTTGTATCA+AGG | 0.477284 | 2.3:-12904987 | None:intergenic |
GGCTCTCTTCTAGCAACATC+AGG | 0.478148 | 2.3:-12912493 | None:intergenic |
CCTTACATTGTGGCTTCTCA+CGG | 0.479790 | 2.3:+12911459 | MS.gene90652:CDS |
TTCAGATGGGTGAAGTGGGT+TGG | 0.479937 | 2.3:+12912562 | MS.gene90652:CDS |
TCGCCGTTTGCTACCGGCGG+AGG | 0.481851 | 2.3:-12904193 | None:intergenic |
ACTGCAGAAAGCACATTTCA+AGG | 0.482048 | 2.3:+12907844 | MS.gene90652:CDS |
ACATATAATGAAGGAGCTGC+AGG | 0.483798 | 2.3:+12905729 | MS.gene90652:CDS |
CCATAGTCTTTGGCAATAGC+AGG | 0.484927 | 2.3:-12912514 | None:intergenic |
TGGTGCAATACAAATATTAG+TGG | 0.485741 | 2.3:+12907430 | MS.gene90652:CDS |
ACTATATTAACAGGGAAGGT+TGG | 0.496292 | 2.3:+12911207 | MS.gene90652:intron |
CACCGCCTGCAGTGAAGAAA+GGG | 0.496638 | 2.3:+12904236 | MS.gene90652:CDS |
TTGTTGAAAGTATGCGGGTA+TGG | 0.498329 | 2.3:-12911388 | None:intergenic |
GTAGTTGTAGGCTCCAGCTT+CGG | 0.499373 | 2.3:-12907775 | None:intergenic |
TGAATACCATACACACCAAT+GGG | 0.503312 | 2.3:-12904683 | None:intergenic |
TCTGATAGTGTTATCTCTCG+TGG | 0.504058 | 2.3:+12908969 | MS.gene90652:CDS |
TACAGTATTATCCAAGATAA+CGG | 0.505137 | 2.3:-12912428 | None:intergenic |
CGAATCCACGGATGAGATTG+AGG | 0.505227 | 2.3:-12907994 | None:intergenic |
GCCAATCCCGATCTCGAAGC+AGG | 0.506582 | 2.3:+12904151 | MS.gene90652:CDS |
AGCCGCAGAGCAGTTCAATT+GGG | 0.506746 | 2.3:+12908937 | MS.gene90652:CDS |
GCGAGGAATGAAGAAGTTGC+TGG | 0.508573 | 2.3:+12904325 | MS.gene90652:CDS |
AGTCCAACTGCAGCAATGGT+TGG | 0.508809 | 2.3:-12907359 | None:intergenic |
CCGCAGACTGTGGATGAGGA+TGG | 0.510661 | 2.3:+12904355 | MS.gene90652:CDS |
TCCCCAACCATTGCTGCAGT+TGG | 0.510791 | 2.3:+12907356 | MS.gene90652:CDS |
TCATTCAGTCCTTGAAACTC+GGG | 0.513438 | 2.3:-12905046 | None:intergenic |
AATTTCCCTATCCATTGCAA+TGG | 0.514239 | 2.3:+12907922 | MS.gene90652:CDS |
CAAACTTTCCTTGGATACAC+TGG | 0.514705 | 2.3:+12905778 | MS.gene90652:CDS |
AATCTACGCTATAGTGAGGC+TGG | 0.514725 | 2.3:+12911315 | MS.gene90652:CDS |
ATAACTTGGCACTGACAAGT+TGG | 0.515363 | 2.3:-12911430 | None:intergenic |
AAGAACGCGGAGTATACGTT+TGG | 0.515456 | 2.3:+12912464 | MS.gene90652:CDS |
CATCTAGACCTCCAACTCCT+GGG | 0.515747 | 2.3:+12908791 | MS.gene90652:CDS |
CCTCCATATTTGCTTTGGAA+AGG | 0.519150 | 2.3:-12911483 | None:intergenic |
GTGCTCAGAAACCATATTTG+AGG | 0.520839 | 2.3:-12907823 | None:intergenic |
ACCAGTTCCACCTTCTTCAT+GGG | 0.521722 | 2.3:+12904030 | MS.gene90652:CDS |
CTAAGAACCCCAGGAGTTGG+AGG | 0.523552 | 2.3:-12908799 | None:intergenic |
CTGACCAGAATCACCGGCAT+TGG | 0.526147 | 2.3:-12904092 | None:intergenic |
GGGGTACTCCTGTCTTCCAC+TGG | 0.527439 | 2.3:+12907943 | MS.gene90652:CDS |
GTTGGCACATGTATCGAGAT+TGG | 0.528428 | 2.3:+12907410 | MS.gene90652:CDS |
CTCAACCTTCACCTGACCAT+TGG | 0.528859 | 2.3:-12904284 | None:intergenic |
CCGCGTTCTTGCTTACTGCC+AGG | 0.530307 | 2.3:-12912451 | None:intergenic |
TCCAACTGCAGCAATGGTTG+GGG | 0.530330 | 2.3:-12907357 | None:intergenic |
TTCCTCGCCGTTCTCCTCAC+CGG | 0.531151 | 2.3:-12904310 | None:intergenic |
CTCCCTTTCTTCACTGCAGG+CGG | 0.531498 | 2.3:-12904238 | None:intergenic |
TCAGGTGAAGGTTGAGCAGC+CGG | 0.534755 | 2.3:+12904291 | MS.gene90652:CDS |
CCTCCTCCGCCGGTAGCAAA+CGG | 0.539693 | 2.3:+12904190 | MS.gene90652:CDS |
ATATTAACAGGGAAGGTTGG+AGG | 0.541804 | 2.3:+12911210 | MS.gene90652:intron |
CTGATAGTGTTATCTCTCGT+GGG | 0.542089 | 2.3:+12908970 | MS.gene90652:CDS |
GATAGGGAAATTTAAACCAT+GGG | 0.542839 | 2.3:-12907911 | None:intergenic |
CTGCTATTGCCAAAGACTAT+GGG | 0.543700 | 2.3:+12912515 | MS.gene90652:CDS |
GTCATTGTTCCTGCTATGGG+AGG | 0.544012 | 2.3:+12904749 | MS.gene90652:CDS |
TTCACCTGACCATTGGTACT+CGG | 0.545845 | 2.3:-12904277 | None:intergenic |
TGGTCTCCTCTGCTTTATGT+GGG | 0.546533 | 2.3:+12911266 | MS.gene90652:CDS |
ACATGAGATCCTCCCATAGC+AGG | 0.549471 | 2.3:-12904758 | None:intergenic |
GGTTTCAGGCCAAAATTCTC+CGG | 0.549553 | 2.3:+12904064 | MS.gene90652:CDS |
CGCAGACTGTGGATGAGGAT+GGG | 0.552092 | 2.3:+12904356 | MS.gene90652:CDS |
AAAGAAGACCCTTGTATCAA+GGG | 0.554159 | 2.3:-12904986 | None:intergenic |
GGATAGGGAAATTTAAACCA+TGG | 0.554977 | 2.3:-12907912 | None:intergenic |
TGAGCAGCCGGTGAGGAGAA+CGG | 0.556833 | 2.3:+12904303 | MS.gene90652:CDS |
TGAAAGTCCAACTGCAGCAA+TGG | 0.557943 | 2.3:-12907363 | None:intergenic |
CATATAATGAAGGAGCTGCA+GGG | 0.557990 | 2.3:+12905730 | MS.gene90652:CDS |
AGACCAGCAACCATGACTCC+AGG | 0.558088 | 2.3:-12911249 | None:intergenic |
CTCGCCAACGTTCGGTACAA+TGG | 0.559635 | 2.3:+12903978 | MS.gene90652:CDS |
GAAATTCCGACATATAATGA+AGG | 0.561093 | 2.3:+12905720 | MS.gene90652:intron |
AGTTCCGAGTACCAATGGTC+AGG | 0.561177 | 2.3:+12904273 | MS.gene90652:CDS |
ACATAATTCCAGTGTATCCA+AGG | 0.561306 | 2.3:-12905786 | None:intergenic |
TATTAACAGGGAAGGTTGGA+GGG | 0.561391 | 2.3:+12911211 | MS.gene90652:intron |
ACTGCAGGCGGTGGAAGCGG+TGG | 0.561871 | 2.3:-12904226 | None:intergenic |
GTTGCCGCAGACTGTGGATG+AGG | 0.562028 | 2.3:+12904351 | MS.gene90652:CDS |
GTACCCCATTGCAATGGATA+GGG | 0.562246 | 2.3:-12907927 | None:intergenic |
TCTAGACTTAACCGGCGGTA+AGG | 0.562449 | 2.3:-12904119 | None:intergenic |
TTCTCCGGCGAGACCAATGC+CGG | 0.567124 | 2.3:+12904079 | MS.gene90652:CDS |
TAAGGCAACTCCTCCTCCGC+CGG | 0.568301 | 2.3:+12904180 | MS.gene90652:CDS |
TTTGGGTTTGGCAATTACAT+GGG | 0.568714 | 2.3:+12907734 | MS.gene90652:CDS |
CTGAATACCATACACACCAA+TGG | 0.569880 | 2.3:-12904684 | None:intergenic |
CCATATTGTTGAAAGTATGC+GGG | 0.570367 | 2.3:-12911393 | None:intergenic |
TTCTCGCCGTTTGCTACCGG+CGG | 0.571248 | 2.3:-12904196 | None:intergenic |
ATGTAAGGTTGAAAATAACT+TGG | 0.572063 | 2.3:-12911444 | None:intergenic |
CTTACATTGTGGCTTCTCAC+GGG | 0.574029 | 2.3:+12911460 | MS.gene90652:CDS |
GGTTTCCTCAATCTCATCCG+TGG | 0.575095 | 2.3:+12907989 | MS.gene90652:CDS |
ATCACCGGCATTGGTCTCGC+CGG | 0.575281 | 2.3:-12904083 | None:intergenic |
TTCTTAGCCCATGAAGAAGG+TGG | 0.575288 | 2.3:-12904037 | None:intergenic |
AGTACCCCATTGCAATGGAT+AGG | 0.575630 | 2.3:-12907928 | None:intergenic |
GCCATATTGTTGAAAGTATG+CGG | 0.580122 | 2.3:-12911394 | None:intergenic |
TGGTCAGATAACCTTACCGC+CGG | 0.582962 | 2.3:+12904108 | MS.gene90652:CDS |
TCAGAAACCATATTTGAGGC+AGG | 0.584266 | 2.3:-12907819 | None:intergenic |
ATAGGAGGAAATTGCTGCAG+TGG | 0.584474 | 2.3:+12904898 | MS.gene90652:intron |
TTTCAGGTTTATCAATCCTG+TGG | 0.587332 | 2.3:+12907328 | MS.gene90652:intron |
AAGAAAGGGAGAGACTCCGA+TGG | 0.590298 | 2.3:+12904250 | MS.gene90652:CDS |
CCAGGTTGCCCTTGATACAA+GGG | 0.591004 | 2.3:+12904978 | MS.gene90652:CDS |
GATGGAGTTCCGAGTACCAA+TGG | 0.591787 | 2.3:+12904268 | MS.gene90652:CDS |
TCGATACATGTGCCAACAAG+AGG | 0.592425 | 2.3:-12907404 | None:intergenic |
ATTGGTACTCGGAACTCCAT+CGG | 0.593106 | 2.3:-12904266 | None:intergenic |
ATATAATGAAGGAGCTGCAG+GGG | 0.596382 | 2.3:+12905731 | MS.gene90652:CDS |
GGTTATCTGACCAGAATCAC+CGG | 0.597229 | 2.3:-12904098 | None:intergenic |
TGAAGGTTGAGCAGCCGGTG+AGG | 0.598381 | 2.3:+12904296 | MS.gene90652:CDS |
ATCTTGGATAATACTGTACC+TGG | 0.600671 | 2.3:+12912433 | MS.gene90652:CDS |
AGTCGCGGAATTGGTCTGGA+AGG | 0.601125 | 2.3:+12908820 | MS.gene90652:CDS |
ACAGGAGTACCCCATTGCAA+TGG | 0.605642 | 2.3:-12907933 | None:intergenic |
CATGTAATTGCCAAACCCAA+AGG | 0.608401 | 2.3:-12907732 | None:intergenic |
TGGTTCGTTGCCGCAGACTG+TGG | 0.608510 | 2.3:+12904345 | MS.gene90652:CDS |
ACGTTCGGTACAATGGTCAC+CGG | 0.609281 | 2.3:+12903985 | MS.gene90652:CDS |
TATGGGTTGCCAATGAGAGT+TGG | 0.609953 | 2.3:+12912532 | MS.gene90652:CDS |
CTTTCCAAAGCAAATATGGA+GGG | 0.614764 | 2.3:+12911484 | MS.gene90652:CDS |
CAGGAATCTAACCGAATCCA+CGG | 0.616676 | 2.3:-12908006 | None:intergenic |
ACTCCTGGGGTTCTTAGTCG+CGG | 0.620983 | 2.3:+12908805 | MS.gene90652:CDS |
GAGTACCAATGGTCAGGTGA+AGG | 0.622716 | 2.3:+12904279 | MS.gene90652:CDS |
GCAGCTCCTTCATTATATGT+CGG | 0.622848 | 2.3:-12905726 | None:intergenic |
AACTGGTTTAGCTTCCGGCG+TGG | 0.626580 | 2.3:-12904014 | None:intergenic |
ATGGTTGGGGATACAACCAC+AGG | 0.628708 | 2.3:-12907344 | None:intergenic |
ATTCCGCGACTAAGAACCCC+AGG | 0.628826 | 2.3:-12908808 | None:intergenic |
GGTTGCCAATGAGAGTTGGT+CGG | 0.630838 | 2.3:+12912536 | MS.gene90652:CDS |
CCATCCTCATCCACAGTCTG+CGG | 0.635353 | 2.3:-12904355 | None:intergenic |
ATGCAATCAAATCATCCCCA+TGG | 0.635438 | 2.3:+12907895 | MS.gene90652:CDS |
CATTGTACCGAACGTTGGCG+AGG | 0.638058 | 2.3:-12903977 | None:intergenic |
CCTTTCCAAAGCAAATATGG+AGG | 0.641808 | 2.3:+12911483 | MS.gene90652:CDS |
GCTTCCGGCGTGGATAACGC+CGG | 0.647288 | 2.3:-12904004 | None:intergenic |
CTGCATATATTAGAAATATG+CGG | 0.650229 | 2.3:-12907588 | None:intergenic |
ATAGCAGGAACAATGACAAG+TGG | 0.651348 | 2.3:-12904743 | None:intergenic |
ATCTAGACCTCCAACTCCTG+GGG | 0.653295 | 2.3:+12908792 | MS.gene90652:CDS |
TTTCCAAAGCAAATATGGAG+GGG | 0.656358 | 2.3:+12911485 | MS.gene90652:CDS |
ACGCGGAGTATACGTTTGGT+CGG | 0.659264 | 2.3:+12912468 | MS.gene90652:CDS |
GTGACCATTGTACCGAACGT+TGG | 0.661147 | 2.3:-12903982 | None:intergenic |
AATGGCTCTTGTGATGTGCG+TGG | 0.663958 | 2.3:+12907968 | MS.gene90652:CDS |
GCTGGAGCCTACAACTACAA+AGG | 0.665279 | 2.3:+12907780 | MS.gene90652:CDS |
GTCCAATCTACGCTATAGTG+AGG | 0.677718 | 2.3:+12911311 | MS.gene90652:CDS |
AAACTCATACCTTACTAACA+GGG | 0.679251 | 2.3:-12905809 | None:intergenic |
GTCACCGGCGTTATCCACGC+CGG | 0.684583 | 2.3:+12904000 | MS.gene90652:CDS |
GCATTGCCCACATAAAGCAG+AGG | 0.690220 | 2.3:-12911272 | None:intergenic |
TATAATGAAGGAGCTGCAGG+GGG | 0.691532 | 2.3:+12905732 | MS.gene90652:CDS |
CCTGGCAGTAAGCAAGAACG+CGG | 0.691600 | 2.3:+12912451 | MS.gene90652:CDS |
AGCCGGTGAGGAGAACGGCG+AGG | 0.711202 | 2.3:+12904308 | MS.gene90652:CDS |
GCTTCTCTAGACTTAACCGG+CGG | 0.711836 | 2.3:-12904124 | None:intergenic |
ATAGGGAAATTTAAACCATG+GGG | 0.713448 | 2.3:-12907910 | None:intergenic |
TTTCCCTATCCATTGCAATG+GGG | 0.717290 | 2.3:+12907924 | MS.gene90652:CDS |
CACCCAATTGAACTGCTCTG+CGG | 0.718427 | 2.3:-12908939 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 12903962 | 12912591 | 12903962 | ID=MS.gene90652 |
chr2.3 | mRNA | 12903962 | 12912591 | 12903962 | ID=MS.gene90652.t1;Parent=MS.gene90652 |
chr2.3 | exon | 12903962 | 12904377 | 12903962 | ID=MS.gene90652.t1.exon1;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12903962 | 12904377 | 12903962 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12904628 | 12904778 | 12904628 | ID=MS.gene90652.t1.exon2;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12904628 | 12904778 | 12904628 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12904902 | 12905072 | 12904902 | ID=MS.gene90652.t1.exon3;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12904902 | 12905072 | 12904902 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12905721 | 12905821 | 12905721 | ID=MS.gene90652.t1.exon4;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12905721 | 12905821 | 12905721 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12907334 | 12907469 | 12907334 | ID=MS.gene90652.t1.exon5;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12907334 | 12907469 | 12907334 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12907559 | 12907609 | 12907559 | ID=MS.gene90652.t1.exon6;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12907559 | 12907609 | 12907559 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12907729 | 12908016 | 12907729 | ID=MS.gene90652.t1.exon7;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12907729 | 12908016 | 12907729 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12908757 | 12908991 | 12908757 | ID=MS.gene90652.t1.exon8;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12908757 | 12908991 | 12908757 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12911220 | 12911506 | 12911220 | ID=MS.gene90652.t1.exon9;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12911220 | 12911506 | 12911220 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
chr2.3 | exon | 12912370 | 12912591 | 12912370 | ID=MS.gene90652.t1.exon10;Parent=MS.gene90652.t1 |
chr2.3 | CDS | 12912370 | 12912591 | 12912370 | ID=cds.MS.gene90652.t1;Parent=MS.gene90652.t1 |
Gene Sequence |
Protein sequence |