Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90756.t1 | XP_003589379.1 | 96.5 | 515 | 17 | 1 | 3 | 517 | 30 | 543 | 6.80E-299 | 1035.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90756.t1 | Q9FYG4 | 48.3 | 522 | 261 | 8 | 3 | 517 | 96 | 615 | 1.6e-134 | 481.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90756.t1 | G7I5Z0 | 96.5 | 515 | 17 | 1 | 3 | 517 | 30 | 543 | 4.9e-299 | 1035.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053074 | MS.gene90756 | 0.843501 | 1.35E-58 | -1.69E-46 |
| MS.gene058168 | MS.gene90756 | 0.814123 | 1.81E-51 | -1.69E-46 |
| MS.gene059006 | MS.gene90756 | 0.832604 | 8.60E-56 | -1.69E-46 |
| MS.gene059124 | MS.gene90756 | 0.806985 | 6.30E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 143 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCATTCCACTGCAATTT+TGG | 0.154597 | 1.3:-1661302 | MS.gene90756:CDS |
| AGCAACATTGGATAAGAATT+TGG | 0.214373 | 1.3:-1661071 | MS.gene90756:CDS |
| TCCACAACCCATGTTGGATT+TGG | 0.222957 | 1.3:+1661523 | None:intergenic |
| AAATTCCTAGTGAAGGAATT+TGG | 0.231449 | 1.3:-1660862 | MS.gene90756:CDS |
| ATAATTAATGGAGCGGGTTC+GGG | 0.268444 | 1.3:-1661439 | MS.gene90756:CDS |
| GATAATTAATGGAGCGGGTT+CGG | 0.293058 | 1.3:-1661440 | MS.gene90756:CDS |
| CCACAACCCATGTTGGATTT+GGG | 0.333106 | 1.3:+1661524 | None:intergenic |
| GCATCAAGGCGTGAGTTTCT+TGG | 0.335410 | 1.3:-1661583 | MS.gene90756:CDS |
| TCACCTATTCTTGCACCTCC+TGG | 0.339464 | 1.3:-1660914 | MS.gene90756:CDS |
| ATTATCAAAACGTCCCCATT+TGG | 0.341185 | 1.3:+1661457 | None:intergenic |
| ATAAAATTGTAACCAATATG+AGG | 0.355050 | 1.3:+1661244 | None:intergenic |
| AACCGATTGCACGGCTCATT+CGG | 0.355271 | 1.3:-1662927 | MS.gene90756:CDS |
| CACCAACAACCTCTGATTCA+TGG | 0.367118 | 1.3:+1661003 | None:intergenic |
| GACACTTTCCGTTGGGTAAA+GGG | 0.373285 | 1.3:+1662978 | None:intergenic |
| GGGACAGCAGGGTGGGAATA+CGG | 0.374378 | 1.3:-1661418 | MS.gene90756:CDS |
| TAAAGAACCGGATTTAGAAC+TGG | 0.381761 | 1.3:+1661388 | None:intergenic |
| TACAAAACTAATAACGTAAT+CGG | 0.382791 | 1.3:-1661367 | MS.gene90756:CDS |
| CGTGATGGTAGGGTTCTTGT+TGG | 0.385112 | 1.3:-1661277 | MS.gene90756:CDS |
| GGAGCGGGTTCGGGGACAGC+AGG | 0.386297 | 1.3:-1661430 | MS.gene90756:CDS |
| ACTGACGTTTGGTGTTCTTC+CGG | 0.387753 | 1.3:-1662857 | MS.gene90756:CDS |
| AGTTATCCAAGCTCAGGTTC+AGG | 0.393608 | 1.3:-1661697 | MS.gene90756:CDS |
| GAAAATGAGTGTGTGTTAAA+AGG | 0.395788 | 1.3:+1661025 | None:intergenic |
| CCATCTTTGGTAGCCGCAGC+TGG | 0.403295 | 1.3:-1663112 | None:intergenic |
| TTATCAAAACGTCCCCATTT+GGG | 0.409918 | 1.3:+1661458 | None:intergenic |
| ATGCCTAGGGCTAGAGTAAT+GGG | 0.418773 | 1.3:-1661496 | MS.gene90756:CDS |
| GGTGGTAGCAACCCTCATAT+TGG | 0.419674 | 1.3:-1661256 | MS.gene90756:CDS |
| GGACAGCAGGGTGGGAATAC+GGG | 0.420291 | 1.3:-1661417 | MS.gene90756:CDS |
| GTCTGGACAAGTGTTCCTTT+AGG | 0.436088 | 1.3:+1662824 | None:intergenic |
| TTTGATTGTAGATTCTTCAA+TGG | 0.436753 | 1.3:+1661664 | None:intergenic |
| CGTTTGGTGTTCTTCCGGTT+CGG | 0.443827 | 1.3:-1662852 | MS.gene90756:CDS |
| ATATTTGATCGTACTGACTT+TGG | 0.444418 | 1.3:-1663013 | MS.gene90756:CDS |
| GGGTCCCCACCTGGGATTTG+AGG | 0.445198 | 1.3:+1661724 | None:intergenic |
| AAGGATTGTGGCTTCTACTT+CGG | 0.446379 | 1.3:-1661140 | MS.gene90756:CDS |
| CGACACTTTCCGTTGGGTAA+AGG | 0.450947 | 1.3:+1662977 | None:intergenic |
| CATCGTTGTAGCCACCGGTC+TGG | 0.451241 | 1.3:+1662807 | None:intergenic |
| GACGGACGTCAGATTATCAT+TGG | 0.452067 | 1.3:-1662677 | MS.gene90756:CDS |
| GCAAAAGCACGGTCAAAAGT+TGG | 0.456115 | 1.3:-1661113 | MS.gene90756:CDS |
| GCTTCGATACTAAGTTCAGT+TGG | 0.459077 | 1.3:+1661208 | None:intergenic |
| ACATGGTAATGCTCCCAAAT+GGG | 0.461570 | 1.3:-1661471 | MS.gene90756:CDS |
| GAAGTAGAAGCCACAATCCT+TGG | 0.461659 | 1.3:+1661142 | None:intergenic |
| CCCAAATCCAACATGGGTTG+TGG | 0.465400 | 1.3:-1661524 | MS.gene90756:CDS |
| ATGATAATCTGACGTCCGTC+GGG | 0.466571 | 1.3:+1662680 | None:intergenic |
| CAAAAGCACGGTCAAAAGTT+GGG | 0.467287 | 1.3:-1661112 | MS.gene90756:CDS |
| CCTGAGCTTGGATAACTCCT+AGG | 0.467424 | 1.3:+1661703 | None:intergenic |
| TCCGTTGGGTAAAGGGAGCT+TGG | 0.468205 | 1.3:+1662985 | None:intergenic |
| TTGTAACAATTGTGATTGGC+AGG | 0.468700 | 1.3:-1662756 | MS.gene90756:CDS |
| GACCGAATGAGCCGTGCAAT+CGG | 0.472666 | 1.3:+1662925 | None:intergenic |
| GACATGGTAATGCTCCCAAA+TGG | 0.475435 | 1.3:-1661472 | MS.gene90756:CDS |
| TGTGATTGGCAGGAATTTGA+CGG | 0.477752 | 1.3:-1662746 | MS.gene90756:CDS |
| GTTATCCAAGCTCAGGTTCA+GGG | 0.478365 | 1.3:-1661696 | MS.gene90756:CDS |
| TCCGGTTCGGTGAATCCTAA+AGG | 0.479007 | 1.3:-1662839 | MS.gene90756:CDS |
| AAATCCCAGGTGGGGACCCT+AGG | 0.479903 | 1.3:-1661720 | MS.gene90756:CDS |
| CGGGTTCGGGGACAGCAGGG+TGG | 0.481834 | 1.3:-1661426 | MS.gene90756:CDS |
| CATGCCTAGGGCTAGAGTAA+TGG | 0.483226 | 1.3:-1661497 | MS.gene90756:CDS |
| AATCCAGGAGGTGCAAGAAT+AGG | 0.486846 | 1.3:+1660911 | None:intergenic |
| AAACAAAGTGAATAATGTGC+AGG | 0.487243 | 1.3:-1660972 | MS.gene90756:CDS |
| TAACTCCTAGGGTCCCCACC+TGG | 0.487338 | 1.3:+1661715 | None:intergenic |
| TGATATTGAGGTTACTATGC+CGG | 0.487729 | 1.3:-1660939 | MS.gene90756:CDS |
| TGTTTGTTCAAACTGACGTT+TGG | 0.489066 | 1.3:-1662868 | MS.gene90756:CDS |
| TTTGGTATATGTTACGATGT+TGG | 0.495056 | 1.3:-1661053 | MS.gene90756:CDS |
| GTCTCCATCGTTGTAGCCAC+CGG | 0.495723 | 1.3:+1662802 | None:intergenic |
| TCCTTTAGGATTCACCGAAC+CGG | 0.496066 | 1.3:+1662838 | None:intergenic |
| GGGTTCGGGGACAGCAGGGT+GGG | 0.499402 | 1.3:-1661425 | MS.gene90756:CDS |
| CTTCGATACTAAGTTCAGTT+GGG | 0.500695 | 1.3:+1661209 | None:intergenic |
| ATACTTGTAACAATTGTGAT+TGG | 0.501433 | 1.3:-1662760 | MS.gene90756:CDS |
| AGTACCCCTGAACCTGAGCT+TGG | 0.503306 | 1.3:+1661691 | None:intergenic |
| ACGGACGTCAGATTATCATT+GGG | 0.504627 | 1.3:-1662676 | MS.gene90756:CDS |
| TCATGACGACACTTTCCGTT+GGG | 0.507837 | 1.3:+1662971 | None:intergenic |
| ATTTGTGGTGGAGCTCCAAA+AGG | 0.507956 | 1.3:-1661619 | MS.gene90756:CDS |
| CATTCGCGAAGCGAGGTTCA+AGG | 0.515507 | 1.3:+1661170 | None:intergenic |
| TGTATCCAAATTCCTTCACT+AGG | 0.522963 | 1.3:+1660857 | None:intergenic |
| TATCAAACATACGAATGGTT+CGG | 0.523167 | 1.3:+1662780 | None:intergenic |
| TATCCTCTTTGACTATACTA+AGG | 0.523749 | 1.3:-1662486 | MS.gene90756:intron |
| TTCCATGAATCAGAGGTTGT+TGG | 0.524137 | 1.3:-1661005 | MS.gene90756:CDS |
| GAATGTTCGTCCAAGGATTG+TGG | 0.526224 | 1.3:-1661152 | MS.gene90756:CDS |
| ATCAAAGTTTATACAAGCTG+AGG | 0.526362 | 1.3:-1661647 | MS.gene90756:CDS |
| TCCGTCGGGCAGAATATGAT+TGG | 0.527723 | 1.3:+1662694 | None:intergenic |
| ATTTCAAGTAAAAGCAACAT+TGG | 0.531009 | 1.3:-1661083 | MS.gene90756:CDS |
| AAGCGAGGTTCAAGGTAAGA+AGG | 0.532513 | 1.3:+1661178 | None:intergenic |
| GCGGACTTGCTGCTCGGAGA+TGG | 0.534369 | 1.3:-1662724 | MS.gene90756:CDS |
| GATATTGAGGTTACTATGCC+GGG | 0.535099 | 1.3:-1660938 | MS.gene90756:CDS |
| CAGACCGGTGGCTACAACGA+TGG | 0.536809 | 1.3:-1662806 | MS.gene90756:CDS |
| GAATCAGAGGTTGTTGGTGT+TGG | 0.537446 | 1.3:-1660999 | MS.gene90756:CDS |
| CCTAGGAGTTATCCAAGCTC+AGG | 0.540194 | 1.3:-1661703 | MS.gene90756:CDS |
| AACTCCTAGGGTCCCCACCT+GGG | 0.542708 | 1.3:+1661716 | None:intergenic |
| GTCATGACGACACTTTCCGT+TGG | 0.543988 | 1.3:+1662970 | None:intergenic |
| GCGAGACCCAGTTCTAAATC+CGG | 0.547300 | 1.3:-1661395 | MS.gene90756:CDS |
| GGGAACAACATATGATATTG+AGG | 0.552074 | 1.3:-1660951 | MS.gene90756:CDS |
| TGTTGTTAGCAAAGATGAAG+AGG | 0.554181 | 1.3:+1662513 | None:intergenic |
| TACATTCGAGGCGTATGAGA+TGG | 0.557294 | 1.3:+1661322 | None:intergenic |
| TTGACGGCGGACTTGCTGCT+CGG | 0.557612 | 1.3:-1662730 | MS.gene90756:CDS |
| CTACCTTAGTATAGTCAAAG+AGG | 0.562748 | 1.3:+1662483 | None:intergenic |
| ACAAATAGCAGATAAAATCC+AGG | 0.565016 | 1.3:+1660896 | None:intergenic |
| AACCCATGTTGGATTTGGGT+CGG | 0.566702 | 1.3:+1661528 | None:intergenic |
| TAAAATTGTAACCAATATGA+GGG | 0.567574 | 1.3:+1661245 | None:intergenic |
| AAAGAACCGGATTTAGAACT+GGG | 0.569963 | 1.3:+1661389 | None:intergenic |
| TTGGAACAGACTAATGATGC+TGG | 0.570563 | 1.3:-1662584 | MS.gene90756:CDS |
| CATAAAGAAATTCCTAGTGA+AGG | 0.570695 | 1.3:-1660869 | MS.gene90756:CDS |
| CACCGTTAAAACCGATTGCA+CGG | 0.572292 | 1.3:-1662936 | MS.gene90756:CDS |
| AAACAATGGACGGAAAGTGT+TGG | 0.572611 | 1.3:+1662886 | None:intergenic |
| TCACCCATTACTCTAGCCCT+AGG | 0.572852 | 1.3:+1661493 | None:intergenic |
| GCTTCGCGAATGTTCGTCCA+AGG | 0.576507 | 1.3:-1661159 | MS.gene90756:CDS |
| GATGGTAGGGTTCTTGTTGG+TGG | 0.579283 | 1.3:-1661274 | MS.gene90756:CDS |
| AATGATAATCTGACGTCCGT+CGG | 0.588364 | 1.3:+1662679 | None:intergenic |
| GTCGGGCAGAATATGATTGG+TGG | 0.588441 | 1.3:+1662697 | None:intergenic |
| TAATTAATGGAGCGGGTTCG+GGG | 0.591461 | 1.3:-1661438 | MS.gene90756:CDS |
| GGCTAGAGTAATGGGTGACA+TGG | 0.592897 | 1.3:-1661488 | MS.gene90756:CDS |
| GGGTTGTGGAGACCATGCCT+AGG | 0.592998 | 1.3:-1661510 | MS.gene90756:CDS |
| GAGCGGGTTCGGGGACAGCA+GGG | 0.594837 | 1.3:-1661429 | MS.gene90756:CDS |
| TAACCGACCCAAATCCAACA+TGG | 0.597315 | 1.3:-1661531 | MS.gene90756:CDS |
| AGAACATTTCCTCAAATCCC+AGG | 0.598634 | 1.3:-1661733 | MS.gene90756:CDS |
| TCCAAGCTCCCTTTACCCAA+CGG | 0.604138 | 1.3:-1662986 | MS.gene90756:CDS |
| AAAGGAACACTTGTCCAGAC+CGG | 0.605527 | 1.3:-1662821 | MS.gene90756:CDS |
| TGGTAGCCGCAGCTGGACAA+TGG | 0.606010 | 1.3:-1663105 | None:intergenic |
| GCAGTGGAATGATACATTCG+AGG | 0.606915 | 1.3:+1661310 | None:intergenic |
| CAGTTTGAACAAACAATGGA+CGG | 0.608679 | 1.3:+1662876 | None:intergenic |
| AACAAAGTGAATAATGTGCA+GGG | 0.608995 | 1.3:-1660971 | MS.gene90756:CDS |
| CTGAGCTTGGATAACTCCTA+GGG | 0.614436 | 1.3:+1661704 | None:intergenic |
| ACGTCAGTTTGAACAAACAA+TGG | 0.614768 | 1.3:+1662872 | None:intergenic |
| CAAATTTAACTAGAATGTAG+TGG | 0.615118 | 1.3:-1661758 | MS.gene90756:intron |
| GTGAAGAAGTTGCATGTGCA+TGG | 0.615355 | 1.3:+1663051 | None:intergenic |
| ACAAGTATCAAACATACGAA+TGG | 0.619375 | 1.3:+1662775 | None:intergenic |
| GGTTGTGGAGACCATGCCTA+GGG | 0.621634 | 1.3:-1661509 | MS.gene90756:CDS |
| GGACGAACATTCGCGAAGCG+AGG | 0.625391 | 1.3:+1661163 | None:intergenic |
| ATCACGAACCAAAATTGCAG+TGG | 0.632842 | 1.3:+1661294 | None:intergenic |
| ATGGTCTCCACAACCCATGT+TGG | 0.632893 | 1.3:+1661517 | None:intergenic |
| CATTTCCTCAAATCCCAGGT+GGG | 0.633836 | 1.3:-1661729 | MS.gene90756:CDS |
| ACCAATCATATTCTGCCCGA+CGG | 0.637737 | 1.3:-1662695 | MS.gene90756:CDS |
| AACCGACCCAAATCCAACAT+GGG | 0.637839 | 1.3:-1661530 | MS.gene90756:CDS |
| ATTTCCTCAAATCCCAGGTG+GGG | 0.639095 | 1.3:-1661728 | MS.gene90756:CDS |
| GGTGCAAGAATAGGTGAACC+CGG | 0.641982 | 1.3:+1660920 | None:intergenic |
| TTATCCAAGCTCAGGTTCAG+GGG | 0.643701 | 1.3:-1661695 | MS.gene90756:CDS |
| ACTTCGGAACTGCAAAAGCA+CGG | 0.645621 | 1.3:-1661124 | MS.gene90756:CDS |
| CATGGTAATGCTCCCAAATG+GGG | 0.649064 | 1.3:-1661470 | MS.gene90756:CDS |
| CATTACTCTAGCCCTAGGCA+TGG | 0.651243 | 1.3:+1661498 | None:intergenic |
| CGGACGTCAGATTATCATTG+GGG | 0.661128 | 1.3:-1662675 | MS.gene90756:CDS |
| GGAACACTTGTCCAGACCGG+TGG | 0.665244 | 1.3:-1662818 | MS.gene90756:CDS |
| TACTTGCCATTGTCCAGCTG+CGG | 0.669654 | 1.3:+1663099 | None:intergenic |
| ACATTTCCTCAAATCCCAGG+TGG | 0.682481 | 1.3:-1661730 | MS.gene90756:CDS |
| AATGAGTGTGTGTTAAAAGG+TGG | 0.707159 | 1.3:+1661028 | None:intergenic |
| GGACGTCAGATTATCATTGG+GGG | 0.730353 | 1.3:-1662674 | MS.gene90756:CDS |
| AATAGCAGATAAAATCCAGG+AGG | 0.735992 | 1.3:+1660899 | None:intergenic |
| GATTGGCAGGAATTTGACGG+CGG | 0.737585 | 1.3:-1662743 | MS.gene90756:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATAACTGTGTTTTATTA+TGG | - | chr1.3:1661874-1661893 | MS.gene90756:intron | 15.0% |
| !!! | TTGTGGTTTTAATTATTATT+TGG | - | chr1.3:1661564-1661583 | MS.gene90756:CDS | 15.0% |
| !! | ATAAAATTGTAACCAATATG+AGG | + | chr1.3:1662705-1662724 | None:intergenic | 20.0% |
| !! | TAAAATTGTAACCAATATGA+GGG | + | chr1.3:1662704-1662723 | None:intergenic | 20.0% |
| !! | TACAAAACTAATAACGTAAT+CGG | - | chr1.3:1662579-1662598 | MS.gene90756:CDS | 20.0% |
| !! | TCAAATTCATAATTTGAACA+TGG | - | chr1.3:1661741-1661760 | MS.gene90756:CDS | 20.0% |
| !!! | TAGTAAATGTTTTTCATTTG+TGG | - | chr1.3:1661547-1661566 | MS.gene90756:CDS | 20.0% |
| !!! | TTATTAGTTTTGTAAAGAAC+CGG | + | chr1.3:1662573-1662592 | None:intergenic | 20.0% |
| ! | ATACTTGTAACAATTGTGAT+TGG | - | chr1.3:1661186-1661205 | MS.gene90756:CDS | 25.0% |
| ! | CAAATTTAACTAGAATGTAG+TGG | - | chr1.3:1662188-1662207 | MS.gene90756:intron | 25.0% |
| ! | TTTGATTGTAGATTCTTCAA+TGG | + | chr1.3:1662285-1662304 | None:intergenic | 25.0% |
| !! | ACTTTGCATTATGTTTGTTA+AGG | - | chr1.3:1661493-1661512 | MS.gene90756:CDS | 25.0% |
| !! | ATTTCAAGTAAAAGCAACAT+TGG | - | chr1.3:1662863-1662882 | MS.gene90756:CDS | 25.0% |
| !!! | ACTTTTAATTTTTGCTACGT+TGG | - | chr1.3:1662139-1662158 | MS.gene90756:intron | 25.0% |
| !!! | CTGTGTTTTATTATGGTATA+TGG | - | chr1.3:1661881-1661900 | MS.gene90756:intron | 25.0% |
| AAACAAAGTGAATAATGTGC+AGG | - | chr1.3:1662974-1662993 | MS.gene90756:CDS | 30.0% | |
| AAACTTATGTCTTTCTTCGA+AGG | - | chr1.3:1661794-1661813 | MS.gene90756:intron | 30.0% | |
| AAATTCCTAGTGAAGGAATT+TGG | - | chr1.3:1663084-1663103 | MS.gene90756:CDS | 30.0% | |
| AACAAAGTGAATAATGTGCA+GGG | - | chr1.3:1662975-1662994 | MS.gene90756:CDS | 30.0% | |
| ACAAATAGCAGATAAAATCC+AGG | + | chr1.3:1663053-1663072 | None:intergenic | 30.0% | |
| ACAAGTATCAAACATACGAA+TGG | + | chr1.3:1661174-1661193 | None:intergenic | 30.0% | |
| ACATAAGTTTGGTCTCATAA+GGG | + | chr1.3:1661784-1661803 | None:intergenic | 30.0% | |
| AGCAACATTGGATAAGAATT+TGG | - | chr1.3:1662875-1662894 | MS.gene90756:CDS | 30.0% | |
| ATCAAAGTTTATACAAGCTG+AGG | - | chr1.3:1662299-1662318 | MS.gene90756:intron | 30.0% | |
| CATAAAGAAATTCCTAGTGA+AGG | - | chr1.3:1663077-1663096 | MS.gene90756:CDS | 30.0% | |
| GAAAATGAGTGTGTGTTAAA+AGG | + | chr1.3:1662924-1662943 | None:intergenic | 30.0% | |
| TATCAAACATACGAATGGTT+CGG | + | chr1.3:1661169-1661188 | None:intergenic | 30.0% | |
| TATCCTCTTTGACTATACTA+AGG | - | chr1.3:1661460-1661479 | MS.gene90756:CDS | 30.0% | |
| TCCACATTGAGAAAAACAAA+TGG | + | chr1.3:1661407-1661426 | None:intergenic | 30.0% | |
| TTCGAAGAAAGACATAAGTT+TGG | + | chr1.3:1661795-1661814 | None:intergenic | 30.0% | |
| TTTGGTATATGTTACGATGT+TGG | - | chr1.3:1662893-1662912 | MS.gene90756:CDS | 30.0% | |
| ! | GCTTTTTGATAAGATCCTTT+TGG | + | chr1.3:1662345-1662364 | None:intergenic | 30.0% |
| ! | TCATTAGTCTGTTCCAAAAA+CGG | + | chr1.3:1661359-1661378 | None:intergenic | 30.0% |
| ! | TTTTACCCTAAAAACGACAA+TGG | - | chr1.3:1661317-1661336 | MS.gene90756:CDS | 30.0% |
| !! | ATATTTGATCGTACTGACTT+TGG | - | chr1.3:1660933-1660952 | MS.gene90756:CDS | 30.0% |
| !! | CGTTTTGATAATTAATGGAG+CGG | - | chr1.3:1662500-1662519 | MS.gene90756:CDS | 30.0% |
| !! | GATCTTATCAAAAAGCATCA+AGG | - | chr1.3:1662349-1662368 | MS.gene90756:intron | 30.0% |
| !! | GTTTTGATAATTAATGGAGC+GGG | - | chr1.3:1662501-1662520 | MS.gene90756:CDS | 30.0% |
| !! | TCCATTTGTTTTTCTCAATG+TGG | - | chr1.3:1661403-1661422 | MS.gene90756:CDS | 30.0% |
| !! | TGGATTTTATCTGCTATTTG+TGG | - | chr1.3:1663052-1663071 | MS.gene90756:CDS | 30.0% |
| !! | TTTGTTTTTCTCAATGTGGA+TGG | - | chr1.3:1661407-1661426 | MS.gene90756:CDS | 30.0% |
| AATAGCAGATAAAATCCAGG+AGG | + | chr1.3:1663050-1663069 | None:intergenic | 35.0% | |
| AATGAGTGTGTGTTAAAAGG+TGG | + | chr1.3:1662921-1662940 | None:intergenic | 35.0% | |
| ACGTCAGTTTGAACAAACAA+TGG | + | chr1.3:1661077-1661096 | None:intergenic | 35.0% | |
| ATTATCAAAACGTCCCCATT+TGG | + | chr1.3:1662492-1662511 | None:intergenic | 35.0% | |
| CAGTTTGAACAAACAATGGA+CGG | + | chr1.3:1661073-1661092 | None:intergenic | 35.0% | |
| CTACCTTAGTATAGTCAAAG+AGG | + | chr1.3:1661466-1661485 | None:intergenic | 35.0% | |
| CTTCGATACTAAGTTCAGTT+GGG | + | chr1.3:1662740-1662759 | None:intergenic | 35.0% | |
| GACATAAGTTTGGTCTCATA+AGG | + | chr1.3:1661785-1661804 | None:intergenic | 35.0% | |
| GGGAACAACATATGATATTG+AGG | - | chr1.3:1662995-1663014 | MS.gene90756:CDS | 35.0% | |
| TGATATTGAGGTTACTATGC+CGG | - | chr1.3:1663007-1663026 | MS.gene90756:CDS | 35.0% | |
| TGTATCCAAATTCCTTCACT+AGG | + | chr1.3:1663092-1663111 | None:intergenic | 35.0% | |
| TGTTGTTAGCAAAGATGAAG+AGG | + | chr1.3:1661436-1661455 | None:intergenic | 35.0% | |
| TGTTTGTTCAAACTGACGTT+TGG | - | chr1.3:1661078-1661097 | MS.gene90756:CDS | 35.0% | |
| TTATCAAAACGTCCCCATTT+GGG | + | chr1.3:1662491-1662510 | None:intergenic | 35.0% | |
| TTGTAACAATTGTGATTGGC+AGG | - | chr1.3:1661190-1661209 | MS.gene90756:CDS | 35.0% | |
| ! | AAAGAACCGGATTTAGAACT+GGG | + | chr1.3:1662560-1662579 | None:intergenic | 35.0% |
| ! | ACTCATTTTCCATGAATCAG+AGG | - | chr1.3:1662934-1662953 | MS.gene90756:CDS | 35.0% |
| ! | CAAGTACTGCAAAAAAGCAT+CGG | - | chr1.3:1660864-1660883 | MS.gene90756:CDS | 35.0% |
| ! | CTTTTAATGCATGTCCTCAA+AGG | - | chr1.3:1662080-1662099 | MS.gene90756:intron | 35.0% |
| ! | GTATCATTCCACTGCAATTT+TGG | - | chr1.3:1662644-1662663 | MS.gene90756:CDS | 35.0% |
| ! | TAAAGAACCGGATTTAGAAC+TGG | + | chr1.3:1662561-1662580 | None:intergenic | 35.0% |
| !! | GGGGACGTTTTGATAATTAA+TGG | - | chr1.3:1662495-1662514 | MS.gene90756:CDS | 35.0% |
| !!! | AATTTTGGTTCGTGATGGTA+GGG | - | chr1.3:1662659-1662678 | MS.gene90756:CDS | 35.0% |
| !!! | ACACTTAGTTTTGACCTTTG+AGG | + | chr1.3:1662097-1662116 | None:intergenic | 35.0% |
| !!! | TAGCACCATTGTCGTTTTTA+GGG | + | chr1.3:1661325-1661344 | None:intergenic | 35.0% |
| !!! | TTGGGTCGGTTATTTTGATT+CGG | + | chr1.3:1662407-1662426 | None:intergenic | 35.0% |
| AAGGATTGTGGCTTCTACTT+CGG | - | chr1.3:1662806-1662825 | MS.gene90756:CDS | 40.0% | |
| AATGATAATCTGACGTCCGT+CGG | + | chr1.3:1661270-1661289 | None:intergenic | 40.0% | |
| ACGGACGTCAGATTATCATT+GGG | - | chr1.3:1661270-1661289 | MS.gene90756:CDS | 40.0% | |
| AGAACATTTCCTCAAATCCC+AGG | - | chr1.3:1662213-1662232 | MS.gene90756:intron | 40.0% | |
| ATCACGAACCAAAATTGCAG+TGG | + | chr1.3:1662655-1662674 | None:intergenic | 40.0% | |
| GATATTGAGGTTACTATGCC+GGG | - | chr1.3:1663008-1663027 | MS.gene90756:CDS | 40.0% | |
| GCTTCGATACTAAGTTCAGT+TGG | + | chr1.3:1662741-1662760 | None:intergenic | 40.0% | |
| TGTGATTGGCAGGAATTTGA+CGG | - | chr1.3:1661200-1661219 | MS.gene90756:CDS | 40.0% | |
| TTCCATGAATCAGAGGTTGT+TGG | - | chr1.3:1662941-1662960 | MS.gene90756:CDS | 40.0% | |
| TTGGAACAGACTAATGATGC+TGG | - | chr1.3:1661362-1661381 | MS.gene90756:CDS | 40.0% | |
| ! | AAACAATGGACGGAAAGTGT+TGG | + | chr1.3:1661063-1661082 | None:intergenic | 40.0% |
| ! | ACATGGTAATGCTCCCAAAT+GGG | - | chr1.3:1662475-1662494 | MS.gene90756:intron | 40.0% |
| ! | ATAATTAATGGAGCGGGTTC+GGG | - | chr1.3:1662507-1662526 | MS.gene90756:CDS | 40.0% |
| ! | CAAAAGCACGGTCAAAAGTT+GGG | - | chr1.3:1662834-1662853 | MS.gene90756:CDS | 40.0% |
| ! | GATAATTAATGGAGCGGGTT+CGG | - | chr1.3:1662506-1662525 | MS.gene90756:CDS | 40.0% |
| ! | TTTTAACGGTGGTTTCTCTG+GGG | + | chr1.3:1661001-1661020 | None:intergenic | 40.0% |
| !! | GTTTTAACGGTGGTTTCTCT+GGG | + | chr1.3:1661002-1661021 | None:intergenic | 40.0% |
| !!! | ACTGCAATTTTGGTTCGTGA+TGG | - | chr1.3:1662654-1662673 | MS.gene90756:CDS | 40.0% |
| !!! | CAAGCTGAGGTTTTGATTTG+TGG | - | chr1.3:1662312-1662331 | MS.gene90756:intron | 40.0% |
| !!! | CAATTTTGGTTCGTGATGGT+AGG | - | chr1.3:1662658-1662677 | MS.gene90756:CDS | 40.0% |
| !!! | GTAGCACCATTGTCGTTTTT+AGG | + | chr1.3:1661326-1661345 | None:intergenic | 40.0% |
| !!! | TACAGTTCGTTTGCCGTTTT+TGG | - | chr1.3:1661343-1661362 | MS.gene90756:CDS | 40.0% |
| !!! | TGGGTCGGTTATTTTGATTC+GGG | + | chr1.3:1662406-1662425 | None:intergenic | 40.0% |
| AAAGGAACACTTGTCCAGAC+CGG | - | chr1.3:1661125-1661144 | MS.gene90756:CDS | 45.0% | |
| AACCCATGTTGGATTTGGGT+CGG | + | chr1.3:1662421-1662440 | None:intergenic | 45.0% | |
| AACCGACCCAAATCCAACAT+GGG | - | chr1.3:1662416-1662435 | MS.gene90756:intron | 45.0% | |
| AAGCGAGGTTCAAGGTAAGA+AGG | + | chr1.3:1662771-1662790 | None:intergenic | 45.0% | |
| ACATTTCCTCAAATCCCAGG+TGG | - | chr1.3:1662216-1662235 | MS.gene90756:intron | 45.0% | |
| ACCAATCATATTCTGCCCGA+CGG | - | chr1.3:1661251-1661270 | MS.gene90756:CDS | 45.0% | |
| ACTTCGGAACTGCAAAAGCA+CGG | - | chr1.3:1662822-1662841 | MS.gene90756:CDS | 45.0% | |
| AGTTATCCAAGCTCAGGTTC+AGG | - | chr1.3:1662249-1662268 | MS.gene90756:intron | 45.0% | |
| ATGATAATCTGACGTCCGTC+GGG | + | chr1.3:1661269-1661288 | None:intergenic | 45.0% | |
| ATGCCTAGGGCTAGAGTAAT+GGG | - | chr1.3:1662450-1662469 | MS.gene90756:intron | 45.0% | |
| ATTTCCTCAAATCCCAGGTG+GGG | - | chr1.3:1662218-1662237 | MS.gene90756:intron | 45.0% | |
| CACCAACAACCTCTGATTCA+TGG | + | chr1.3:1662946-1662965 | None:intergenic | 45.0% | |
| CACCGTTAAAACCGATTGCA+CGG | - | chr1.3:1661010-1661029 | MS.gene90756:CDS | 45.0% | |
| CATTTCCTCAAATCCCAGGT+GGG | - | chr1.3:1662217-1662236 | MS.gene90756:intron | 45.0% | |
| CCACAACCCATGTTGGATTT+GGG | + | chr1.3:1662425-1662444 | None:intergenic | 45.0% | |
| CGGACGTCAGATTATCATTG+GGG | - | chr1.3:1661271-1661290 | MS.gene90756:CDS | 45.0% | |
| CTGAGCTTGGATAACTCCTA+GGG | + | chr1.3:1662245-1662264 | None:intergenic | 45.0% | |
| GAAGTAGAAGCCACAATCCT+TGG | + | chr1.3:1662807-1662826 | None:intergenic | 45.0% | |
| GAATCAGAGGTTGTTGGTGT+TGG | - | chr1.3:1662947-1662966 | MS.gene90756:CDS | 45.0% | |
| GAATGTTCGTCCAAGGATTG+TGG | - | chr1.3:1662794-1662813 | MS.gene90756:CDS | 45.0% | |
| GACACTTTCCGTTGGGTAAA+GGG | + | chr1.3:1660971-1660990 | None:intergenic | 45.0% | |
| GACGGACGTCAGATTATCAT+TGG | - | chr1.3:1661269-1661288 | MS.gene90756:CDS | 45.0% | |
| GCAGTGGAATGATACATTCG+AGG | + | chr1.3:1662639-1662658 | None:intergenic | 45.0% | |
| GGACGTCAGATTATCATTGG+GGG | - | chr1.3:1661272-1661291 | MS.gene90756:CDS | 45.0% | |
| GTCTGGACAAGTGTTCCTTT+AGG | + | chr1.3:1661125-1661144 | None:intergenic | 45.0% | |
| GTGAAGAAGTTGCATGTGCA+TGG | + | chr1.3:1660898-1660917 | None:intergenic | 45.0% | |
| GTTATCCAAGCTCAGGTTCA+GGG | - | chr1.3:1662250-1662269 | MS.gene90756:intron | 45.0% | |
| TAACCGACCCAAATCCAACA+TGG | - | chr1.3:1662415-1662434 | MS.gene90756:intron | 45.0% | |
| TACATTCGAGGCGTATGAGA+TGG | + | chr1.3:1662627-1662646 | None:intergenic | 45.0% | |
| TCATGACGACACTTTCCGTT+GGG | + | chr1.3:1660978-1660997 | None:intergenic | 45.0% | |
| TCCACAACCCATGTTGGATT+TGG | + | chr1.3:1662426-1662445 | None:intergenic | 45.0% | |
| TTATCCAAGCTCAGGTTCAG+GGG | - | chr1.3:1662251-1662270 | MS.gene90756:intron | 45.0% | |
| ! | AATCCAGGAGGTGCAAGAAT+AGG | + | chr1.3:1663038-1663057 | None:intergenic | 45.0% |
| ! | ATTTGTGGTGGAGCTCCAAA+AGG | - | chr1.3:1662327-1662346 | MS.gene90756:intron | 45.0% |
| ! | CATGGTAATGCTCCCAAATG+GGG | - | chr1.3:1662476-1662495 | MS.gene90756:intron | 45.0% |
| ! | GACATGGTAATGCTCCCAAA+TGG | - | chr1.3:1662474-1662493 | MS.gene90756:intron | 45.0% |
| ! | GCAAAAGCACGGTCAAAAGT+TGG | - | chr1.3:1662833-1662852 | MS.gene90756:CDS | 45.0% |
| ! | TAATTAATGGAGCGGGTTCG+GGG | - | chr1.3:1662508-1662527 | MS.gene90756:CDS | 45.0% |
| !! | ACTGACGTTTGGTGTTCTTC+CGG | - | chr1.3:1661089-1661108 | MS.gene90756:CDS | 45.0% |
| !! | AGCCGTGCAATCGGTTTTAA+CGG | + | chr1.3:1661015-1661034 | None:intergenic | 45.0% |
| !! | GCAAAAAAGCATCGGCATTG+TGG | - | chr1.3:1660872-1660891 | MS.gene90756:CDS | 45.0% |
| !! | GGTTTTAACGGTGGTTTCTC+TGG | + | chr1.3:1661003-1661022 | None:intergenic | 45.0% |
| !! | TCCTTTAGGATTCACCGAAC+CGG | + | chr1.3:1661111-1661130 | None:intergenic | 45.0% |
| !!! | GCTGAGGTTTTGATTTGTGG+TGG | - | chr1.3:1662315-1662334 | MS.gene90756:intron | 45.0% |
| AACCGATTGCACGGCTCATT+CGG | - | chr1.3:1661019-1661038 | MS.gene90756:CDS | 50.0% | |
| ATGGTCTCCACAACCCATGT+TGG | + | chr1.3:1662432-1662451 | None:intergenic | 50.0% | |
| CATGCCTAGGGCTAGAGTAA+TGG | - | chr1.3:1662449-1662468 | MS.gene90756:intron | 50.0% | |
| CATTACTCTAGCCCTAGGCA+TGG | + | chr1.3:1662451-1662470 | None:intergenic | 50.0% | |
| CCTAGGAGTTATCCAAGCTC+AGG | - | chr1.3:1662243-1662262 | MS.gene90756:intron | 50.0% | |
| CCTGAGCTTGGATAACTCCT+AGG | + | chr1.3:1662246-1662265 | None:intergenic | 50.0% | |
| CGACACTTTCCGTTGGGTAA+AGG | + | chr1.3:1660972-1660991 | None:intergenic | 50.0% | |
| CGTGATGGTAGGGTTCTTGT+TGG | - | chr1.3:1662669-1662688 | MS.gene90756:CDS | 50.0% | |
| GATGGTAGGGTTCTTGTTGG+TGG | - | chr1.3:1662672-1662691 | MS.gene90756:CDS | 50.0% | |
| GATTGGCAGGAATTTGACGG+CGG | - | chr1.3:1661203-1661222 | MS.gene90756:CDS | 50.0% | |
| GCATCAAGGCGTGAGTTTCT+TGG | - | chr1.3:1662363-1662382 | MS.gene90756:intron | 50.0% | |
| GGTGCAAGAATAGGTGAACC+CGG | + | chr1.3:1663029-1663048 | None:intergenic | 50.0% | |
| GGTGGTAGCAACCCTCATAT+TGG | - | chr1.3:1662690-1662709 | MS.gene90756:CDS | 50.0% | |
| GTCATGACGACACTTTCCGT+TGG | + | chr1.3:1660979-1660998 | None:intergenic | 50.0% | |
| GTCGGGCAGAATATGATTGG+TGG | + | chr1.3:1661252-1661271 | None:intergenic | 50.0% | |
| TACTTGCCATTGTCCAGCTG+CGG | + | chr1.3:1660850-1660869 | None:intergenic | 50.0% | |
| TCACCCATTACTCTAGCCCT+AGG | + | chr1.3:1662456-1662475 | None:intergenic | 50.0% | |
| TCACCTATTCTTGCACCTCC+TGG | - | chr1.3:1663032-1663051 | MS.gene90756:CDS | 50.0% | |
| TCCAAGCTCCCTTTACCCAA+CGG | - | chr1.3:1660960-1660979 | MS.gene90756:CDS | 50.0% | |
| TCCGTCGGGCAGAATATGAT+TGG | + | chr1.3:1661255-1661274 | None:intergenic | 50.0% | |
| ! | CCCAAATCCAACATGGGTTG+TGG | - | chr1.3:1662422-1662441 | MS.gene90756:intron | 50.0% |
| !! | CGTGCAATCGGTTTTAACGG+TGG | + | chr1.3:1661012-1661031 | None:intergenic | 50.0% |
| !! | CGTTTGGTGTTCTTCCGGTT+CGG | - | chr1.3:1661094-1661113 | MS.gene90756:CDS | 50.0% |
| !! | GCGAGACCCAGTTCTAAATC+CGG | - | chr1.3:1662551-1662570 | MS.gene90756:CDS | 50.0% |
| !! | GGCTAGAGTAATGGGTGACA+TGG | - | chr1.3:1662458-1662477 | MS.gene90756:intron | 50.0% |
| !! | TCCGGTTCGGTGAATCCTAA+AGG | - | chr1.3:1661107-1661126 | MS.gene90756:CDS | 50.0% |
| AGTACCCCTGAACCTGAGCT+TGG | + | chr1.3:1662258-1662277 | None:intergenic | 55.0% | |
| CATTCGCGAAGCGAGGTTCA+AGG | + | chr1.3:1662779-1662798 | None:intergenic | 55.0% | |
| GACCGAATGAGCCGTGCAAT+CGG | + | chr1.3:1661024-1661043 | None:intergenic | 55.0% | |
| GCTTCGCGAATGTTCGTCCA+AGG | - | chr1.3:1662787-1662806 | MS.gene90756:CDS | 55.0% | |
| GGTTGTGGAGACCATGCCTA+GGG | - | chr1.3:1662437-1662456 | MS.gene90756:intron | 55.0% | |
| GTCTCCATCGTTGTAGCCAC+CGG | + | chr1.3:1661147-1661166 | None:intergenic | 55.0% | |
| TCCGTTGGGTAAAGGGAGCT+TGG | + | chr1.3:1660964-1660983 | None:intergenic | 55.0% | |
| AAATCCCAGGTGGGGACCCT+AGG | - | chr1.3:1662226-1662245 | MS.gene90756:intron | 60.0% | |
| AACTCCTAGGGTCCCCACCT+GGG | + | chr1.3:1662233-1662252 | None:intergenic | 60.0% | |
| CAGACCGGTGGCTACAACGA+TGG | - | chr1.3:1661140-1661159 | MS.gene90756:CDS | 60.0% | |
| CATCGTTGTAGCCACCGGTC+TGG | + | chr1.3:1661142-1661161 | None:intergenic | 60.0% | |
| GGAACACTTGTCCAGACCGG+TGG | - | chr1.3:1661128-1661147 | MS.gene90756:CDS | 60.0% | |
| GGACAGCAGGGTGGGAATAC+GGG | - | chr1.3:1662529-1662548 | MS.gene90756:CDS | 60.0% | |
| GGACGAACATTCGCGAAGCG+AGG | + | chr1.3:1662786-1662805 | None:intergenic | 60.0% | |
| GGGACAGCAGGGTGGGAATA+CGG | - | chr1.3:1662528-1662547 | MS.gene90756:CDS | 60.0% | |
| GGGTTGTGGAGACCATGCCT+AGG | - | chr1.3:1662436-1662455 | MS.gene90756:intron | 60.0% | |
| TAACTCCTAGGGTCCCCACC+TGG | + | chr1.3:1662234-1662253 | None:intergenic | 60.0% | |
| !! | TTGACGGCGGACTTGCTGCT+CGG | - | chr1.3:1661216-1661235 | MS.gene90756:CDS | 60.0% |
| GGGTCCCCACCTGGGATTTG+AGG | + | chr1.3:1662225-1662244 | None:intergenic | 65.0% | |
| !! | GCGGACTTGCTGCTCGGAGA+TGG | - | chr1.3:1661222-1661241 | MS.gene90756:CDS | 65.0% |
| GGGTTCGGGGACAGCAGGGT+GGG | - | chr1.3:1662521-1662540 | MS.gene90756:CDS | 70.0% | |
| ! | GAGCGGGTTCGGGGACAGCA+GGG | - | chr1.3:1662517-1662536 | MS.gene90756:CDS | 70.0% |
| CGGGTTCGGGGACAGCAGGG+TGG | - | chr1.3:1662520-1662539 | MS.gene90756:CDS | 75.0% | |
| ! | GGAGCGGGTTCGGGGACAGC+AGG | - | chr1.3:1662516-1662535 | MS.gene90756:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1660847 | 1663121 | 1660847 | ID=MS.gene90756 |
| chr1.3 | mRNA | 1660847 | 1663121 | 1660847 | ID=MS.gene90756.t1;Parent=MS.gene90756 |
| chr1.3 | exon | 1662487 | 1663121 | 1662487 | ID=MS.gene90756.t1.exon1;Parent=MS.gene90756.t1 |
| chr1.3 | CDS | 1662487 | 1663121 | 1662487 | ID=cds.MS.gene90756.t1;Parent=MS.gene90756.t1 |
| chr1.3 | exon | 1660847 | 1661767 | 1660847 | ID=MS.gene90756.t1.exon2;Parent=MS.gene90756.t1 |
| chr1.3 | CDS | 1660847 | 1661767 | 1660847 | ID=cds.MS.gene90756.t1;Parent=MS.gene90756.t1 |
| Gene Sequence |
| Protein sequence |
