AlfalfaGEDB | MS.gene90771

M. sativa cultivar XinJiangDaYe / MS.gene90771

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90771.t1	XP_003628883.1	64.9	339	5	2	1	226	1	338	1.20E-109	406

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90771.t1	Q9LSL6	32.1	330	88	11	4	226	16	316	2.7e-30	133.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90771.t1	G7LIJ3	64.9	339	5	2	1	226	1	338	8.3e-110	406.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene90771.t1	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050398	MS.gene90771	0.80333	3.67E-49	-1.69E-46
MS.gene054011	MS.gene90771	0.801602	8.33E-49	-1.69E-46
MS.gene054012	MS.gene90771	0.804984	1.66E-49	-1.69E-46
MS.gene054013	MS.gene90771	0.802389	5.74E-49	-1.69E-46
MS.gene057754	MS.gene90771	0.805197	1.50E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90771.t1	MTR_8g068210	96.875	128	3	1	99	226	212	338	5.63e-86	258
MS.gene90771.t1	MTR_8g068210	90.000	110	6	1	1	105	1	110	5.75e-68	212
MS.gene90771.t1	MTR_2g096740	61.176	85	30	1	21	102	51	135	9.79e-33	120
MS.gene90771.t1	MTR_2g096740	61.176	85	30	1	21	102	66	150	1.02e-32	120
MS.gene90771.t1	MTR_5g031440	94.118	51	3	0	32	82	43	93	2.54e-32	120
MS.gene90771.t1	MTR_5g031440	46.617	133	42	8	100	226	227	336	1.82e-20	88.2
MS.gene90771.t1	MTR_7g024670	50.450	111	44	2	8	107	43	153	5.65e-32	120
MS.gene90771.t1	MTR_4g063780	77.273	66	12	1	31	93	74	139	1.36e-31	118
MS.gene90771.t1	MTR_8g479350	72.464	69	18	1	32	99	68	136	3.50e-31	117
MS.gene90771.t1	MTR_4g088580	76.190	63	12	1	33	92	56	118	8.12e-31	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene90771.t1	AT1G51700	44.966	149	66	5	32	175	33	170	2.55e-34	121
MS.gene90771.t1	AT5G65590	60.000	95	32	3	4	98	16	104	4.58e-33	121
MS.gene90771.t1	AT5G65590	37.795	127	53	6	100	226	216	316	2.88e-14	70.9
MS.gene90771.t1	AT5G60200	61.446	83	30	1	14	94	35	117	2.32e-32	118
MS.gene90771.t1	AT2G37590	76.667	60	14	0	29	88	86	145	1.74e-31	117
MS.gene90771.t1	AT4G38000	37.566	189	60	4	31	165	40	224	1.04e-30	114
MS.gene90771.t1	AT2G28810	58.242	91	27	2	4	83	38	128	1.19e-30	115
MS.gene90771.t1	AT2G28810	58.242	91	27	2	4	83	55	145	1.55e-30	115
MS.gene90771.t1	AT3G45610	60.759	79	30	1	8	86	17	94	1.65e-30	113
MS.gene90771.t1	AT3G55370	74.603	63	16	0	29	91	73	135	2.38e-30	114

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Find 36 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACAATTGGATTAATAA+TGG	0.366146	8.1:-36688520	MS.gene90771:CDS
AAGGCTGAGATGTTTCAAGT+TGG	0.583200	8.1:-36688679	MS.gene90771:CDS
AATAATGGTGTTCATGCTTG+GGG	0.619834	8.1:-36688505	MS.gene90771:CDS
AATGGTGATCATGATCAAAA+TGG	0.343971	8.1:-36688544	MS.gene90771:CDS
AGAAGATATTGGACAAATGG+TGG	0.635966	8.1:-36689270	MS.gene90771:CDS
ATCAAAATGGTAACAACAAT+TGG	0.348472	8.1:-36688531	MS.gene90771:CDS
CAAGATCATGAAAACCAACA+AGG	0.656147	8.1:-36689429	MS.gene90771:CDS
CCTGTTATTATCTTCAAACA+AGG	0.552716	8.1:+36688783	None:intergenic
CCTTGTTTGAAGATAATAAC+AGG	0.384597	8.1:-36688783	MS.gene90771:CDS
CGTAACGTTCCGATAGGTGG+TGG	0.551463	8.1:-36689240	MS.gene90771:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGGTAATGATAAAGGTAA+GGG	+	chr8.1:36688807-36688826	None:intergenic	30.0%
AATGGTGATCATGATCAAAA+TGG	-	chr8.1:36689377-36689396	MS.gene90771:CDS	30.0%
CCTGTTATTATCTTCAAACA+AGG	+	chr8.1:36689141-36689160	None:intergenic	30.0%
GATCTTAGTGTTTGCATTAA+TGG	-	chr8.1:36689359-36689378	MS.gene90771:CDS	30.0%
GGAAATGAAAATGCAATTCA+AGG	-	chr8.1:36688988-36689007	MS.gene90771:intron	30.0%
TAATAATGGTGTTCATGCTT+GGG	-	chr8.1:36689415-36689434	MS.gene90771:CDS	30.0%
TACTTATTAATGGCTTGAGA+TGG	+	chr8.1:36688744-36688763	None:intergenic	30.0%
TATCCTTTCTCTTCTTCAAA+TGG	-	chr8.1:36688946-36688965	MS.gene90771:intron	30.0%
TCAGAATCTTGAGATTTCAA+AGG	-	chr8.1:36689223-36689242	MS.gene90771:CDS	30.0%
TTAATAATGGTGTTCATGCT+TGG	-	chr8.1:36689414-36689433	MS.gene90771:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	36688465	36689478	36688465	ID=MS.gene90771
chr8.1	mRNA	36688465	36689478	36688465	ID=MS.gene90771.t1;Parent=MS.gene90771
chr8.1	exon	36689183	36689478	36689183	ID=MS.gene90771.t1.exon1;Parent=MS.gene90771.t1
chr8.1	CDS	36689183	36689478	36689183	ID=cds.MS.gene90771.t1;Parent=MS.gene90771.t1
chr8.1	exon	36688465	36688849	36688465	ID=MS.gene90771.t1.exon2;Parent=MS.gene90771.t1
chr8.1	CDS	36688465	36688849	36688465	ID=cds.MS.gene90771.t1;Parent=MS.gene90771.t1

Gene Sequence

>MS.gene90771

ATGGTGGCACCAAATCACAAAACCACACAAGATCATGAAAACCAACAAGGTTCTTCTTCAGAAACCAAGATAACAGATCAACAAAAAGTTGCAGTAAAATGTCCAAGATGTGATTCTCCAAACACAAAATTCTGCTACTACAACAACTACAGTCTCACTCAACCAAGACATTTCTGCAAAACATGCAGAAGATATTGGACAAATGGTGGATCGTTGCGTAACGTTCCGATAGGTGGTGGTTGCAGAAAGAAACAAAAACTCAAACACTCATCTACACCATCTCAAGCCATTAATAAGTACTCTTCTTCACCTTCACTTGATTTTCATCTTGGTTCTTTACCCTTACCTTTATCATTACCCTTCTCTTCAAAACCATTTTACTATAACCAATTTTCTTCCATTGGTGGAGTTTCAAGTTCAAACACTTGTGTTTCTACTCAAGTGCTTCAAGTTTTCACCTTGATCCAAATGGTTTAAATTATATCCTTTCTCTTCTTCAAATGGAGGTGGATTTATTAATGGTGGAAATGAAAATGCAATTCAAGGAATGAACTTATGAATGTGAGTACTAGTGCTAATAATGCTAATTGCACTAGTCTTGCTTCTAGTATTGAATCATTGAGTTGTAGGAACCAAGATTTGCATTTGAAGCTTCAGCAGCAGAGATTAGCAACCTTGTTTGAAGATAATAACAGGAAAGAGAGTGGAACTGTTTTGCTTTCTCAGGTTAGCATTGAAAAGCCTCAACCTATTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATGTTTCAAGTTGGTGGTGGTGCTGGTGATTCAAGAAAAGAAGGTGCAAGTGAATGGTTCTTTGGTATGAATTCTTATTCATCTGTTATGGCTCCTGCAACAACTACTGATCTTAGTGTTTGCATTAATGGTGATCATGATCAAAATGGTAACAACAATTGGATTAATAATGGTGTTCATGCTTGGGGTGATGTGCAGCAGCAGCAACCATATACTGCTTTGCCCTAA

Protein sequence

>MS.gene90771.t1

MVAPNHKTTQDHENQQGSSSETKITDQQKVAVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPIGGGCRKKQKLKHSSTPSQAINKNQDLHLKLQQQRLATLFEDNNRKESGTVLLSQVSIEKPQPILFQNLEISKAEMFQVGGGAGDSRKEGASEWFFGMNSYSSVMAPATTTDLSVCINGDHDQNGNNNWINNGVHAWGDVQQQQPYTALP