AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054011


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054011.t1 MTR_2g088470 98.947 285 2 1 1 285 428 711 0.0 577
MS.gene054011.t1 MTR_4g047800 87.889 289 31 1 1 285 420 708 2.22e-172 494
MS.gene054011.t1 MTR_8g432540 65.529 293 87 4 1 283 495 783 1.21e-125 377
MS.gene054011.t1 MTR_7g076080 65.157 287 93 4 1 283 468 751 4.28e-124 372
MS.gene054011.t1 MTR_1g101280 61.092 293 104 4 1 285 439 729 1.79e-115 349
MS.gene054011.t1 MTR_5g005600 57.840 287 116 4 1 285 412 695 1.04e-112 341
MS.gene054011.t1 MTR_6g477820 50.331 302 126 7 1 283 404 700 3.03e-97 301
MS.gene054011.t1 MTR_2g101720 48.252 286 142 2 3 285 486 768 5.60e-94 294
MS.gene054011.t1 MTR_5g029320 45.455 297 147 4 1 285 464 757 8.99e-86 273
MS.gene054011.t1 MTR_7g427710 47.458 295 119 8 1 280 342 615 7.19e-80 254
MS.gene054011.t1 MTR_0198s0030 44.000 300 145 6 1 285 439 730 4.62e-76 246
MS.gene054011.t1 MTR_2g030570 40.357 280 162 4 1 277 387 664 4.64e-61 205
MS.gene054011.t1 MTR_2g030600 40.727 275 158 4 1 272 385 657 1.11e-59 201
MS.gene054011.t1 MTR_2g083350 42.857 280 146 7 1 274 228 499 1.05e-58 196
MS.gene054011.t1 MTR_2g083330 40.502 279 156 5 1 274 220 493 2.25e-58 195
MS.gene054011.t1 MTR_0653s0020 44.393 214 102 3 1 213 1 198 7.63e-58 184
MS.gene054011.t1 MTR_7g427690 45.500 200 92 4 1 199 243 426 1.19e-52 178
MS.gene054011.t1 MTR_2g030660 34.307 274 170 5 3 273 349 615 1.14e-39 146
MS.gene054011.t1 MTR_2g030690 32.540 252 161 4 24 273 1 245 9.65e-34 124
MS.gene054011.t1 MTR_7g427700 44.776 134 57 3 158 280 281 408 1.63e-27 110
MS.gene054011.t1 MTR_0653s0010 49.474 95 33 2 197 280 1 91 3.98e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 87.018 285 32 1 1 285 416 695 8.20e-179 510
MS.gene054011.t1 AT1G05230 86.316 285 32 2 1 285 416 693 2.01e-175 502
MS.gene054011.t1 AT4G04890 78.305 295 50 3 1 285 424 714 9.27e-163 470
MS.gene054011.t1 AT4G04890 78.305 295 50 3 1 285 424 714 9.27e-163 470
MS.gene054011.t1 AT4G21750 75.738 305 54 1 1 285 432 736 3.46e-160 464
MS.gene054011.t1 AT4G21750 75.738 305 54 1 1 285 432 736 3.46e-160 464
MS.gene054011.t1 AT4G21750 75.738 305 54 1 1 285 432 736 3.46e-160 464
MS.gene054011.t1 AT4G21750 75.738 305 54 1 1 285 432 736 3.46e-160 464
MS.gene054011.t1 AT1G05230 89.362 188 20 0 1 188 416 603 9.91e-122 361
MS.gene054011.t1 AT4G00730 60.777 283 106 4 3 283 496 775 1.91e-111 340
MS.gene054011.t1 AT3G61150 57.192 292 116 2 1 283 489 780 3.29e-108 332
MS.gene054011.t1 AT2G32370 51.916 287 122 6 1 283 423 697 1.63e-98 304
MS.gene054011.t1 AT1G17920 49.301 286 128 5 1 283 387 658 1.80e-89 280
MS.gene054011.t1 AT1G17920 49.301 286 128 5 1 283 387 658 1.80e-89 280
MS.gene054011.t1 AT1G73360 49.481 289 135 5 1 283 407 690 5.15e-88 277
MS.gene054011.t1 AT5G52170 48.264 288 136 4 3 283 379 660 2.08e-85 269
MS.gene054011.t1 AT1G79840 45.775 284 148 2 3 283 381 661 4.09e-84 266
MS.gene054011.t1 AT1G79840 45.775 284 148 2 3 283 381 661 4.09e-84 266
MS.gene054011.t1 AT5G52170 48.611 288 130 6 3 283 379 655 5.96e-84 265
MS.gene054011.t1 AT5G52170 48.611 288 130 6 3 283 379 655 5.96e-84 265
MS.gene054011.t1 AT1G79840 45.775 284 148 2 3 283 439 719 1.27e-83 266
MS.gene054011.t1 AT1G79840 45.775 284 148 2 3 283 468 748 3.04e-83 266
MS.gene054011.t1 AT5G46880 46.479 284 143 6 1 282 506 782 3.55e-83 266
MS.gene054011.t1 AT5G46880 46.479 284 143 6 1 282 506 782 3.55e-83 266
MS.gene054011.t1 AT5G46880 46.479 284 143 6 1 282 506 782 3.55e-83 266
MS.gene054011.t1 AT4G17710 43.206 287 144 6 1 285 413 682 2.86e-68 224
MS.gene054011.t1 AT4G25530 38.947 285 162 4 1 284 387 660 8.63e-65 215
MS.gene054011.t1 AT3G03260 40.484 289 146 7 1 275 385 661 4.19e-64 213
MS.gene054011.t1 AT1G79840 48.901 182 93 0 3 184 439 620 5.50e-58 196
MS.gene054011.t1 AT5G17320 36.879 282 162 7 1 275 410 682 5.35e-51 178
MS.gene054011.t1 AT1G34650 37.050 278 164 6 1 275 403 672 3.48e-46 165
MS.gene054011.t1 AT3G03260 41.139 158 87 4 1 156 385 538 8.53e-31 120
MS.gene054011.t1 AT5G07260 27.711 249 165 7 1 245 254 491 7.14e-23 98.6
MS.gene054011.t1 AT5G07260 27.419 248 162 7 1 245 254 486 2.76e-22 96.7
MS.gene054011.t1 AT4G00730 52.459 61 29 0 3 63 496 556 7.98e-16 77.8
MS.gene054011.t1 AT1G79840 55.738 61 27 0 3 63 439 499 1.26e-15 77.0

Find 72 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCAATATGTGCCATTTCT+TGG 0.247675 2.4:-12472956 None:intergenic
GACTGTTGCATTTCAAATAT+TGG 0.260496 2.4:+12473576 MS.gene054011:CDS
CACACGTGGACAACACTTTC+AGG 0.288181 2.4:+12472018 MS.gene054011:CDS
TACAAGCAGCTTGTTAGTTC+TGG 0.292041 2.4:+12471663 MS.gene054011:CDS
ACAATGCCAGCTGGTCTTCC+TGG 0.308126 2.4:-12472090 None:intergenic
GTCTTTCACATTGTCGATCT+AGG 0.317831 2.4:-12471719 None:intergenic
GGAGGAGGTGTTGGTGAAAC+TGG 0.354741 2.4:+12473532 MS.gene054011:CDS
TTTGGTGTGGTTGTCCCATC+TGG 0.359343 2.4:-12473508 None:intergenic
GTAATATCAACATGTTGCTT+TGG 0.360562 2.4:-12473354 None:intergenic
AAAATTTCCCTAGGTTATAT+GGG 0.368108 2.4:+12471599 MS.gene054011:intron
ATTGCTAATGGAAGAGATAC+TGG 0.369741 2.4:+12472972 MS.gene054011:CDS
GGAAGAAGTGCTACATAATC+TGG 0.371226 2.4:-12473466 None:intergenic
TATGTAGCACTTCTTCCATC+TGG 0.375152 2.4:+12473472 MS.gene054011:CDS
GTTAGTTCTGGACATGCATT+TGG 0.380690 2.4:+12471675 MS.gene054011:CDS
CTGGGTCATCTACACTCTTA+CGG 0.388294 2.4:-12472071 None:intergenic
GCAATGAATGTGGTTCTAAA+TGG 0.388547 2.4:+12473436 MS.gene054011:CDS
GAAATGGCACATATTGCTAA+TGG 0.396088 2.4:+12472960 MS.gene054011:CDS
ACATACTCTTTCTCCCATCT+TGG 0.396801 2.4:-12471936 None:intergenic
ATAACCTTTGAGTAGCCATT+TGG 0.403234 2.4:-12471476 None:intergenic
ATTTCAAATATTGGTTGATT+CGG 0.406456 2.4:+12473585 MS.gene054011:CDS
TGGGTCATCTACACTCTTAC+GGG 0.423400 2.4:-12472070 None:intergenic
TCCAACGGCAAAACTTCTCT+TGG 0.427283 2.4:+12473609 MS.gene054011:CDS
TCACCAACACCTCCTCCATT+TGG 0.438216 2.4:-12473526 None:intergenic
GCACAGGAGCTGATGATGTA+AGG 0.441905 2.4:+12472040 MS.gene054011:CDS
TTCTTGGACAACTCCACCAT+TGG 0.466612 2.4:-12472940 None:intergenic
GATGGGACAACCACACCAAA+TGG 0.467628 2.4:+12473511 MS.gene054011:CDS
TGGTGGAGTTGTCCAAGAAA+TGG 0.474459 2.4:+12472944 MS.gene054011:CDS
TCTTTCACATTGTCGATCTA+GGG 0.482839 2.4:-12471718 None:intergenic
GAGAGTTGTACGGATTCAAC+AGG 0.503171 2.4:+12473379 MS.gene054011:CDS
CAATGCCAGCTGGTCTTCCT+GGG 0.508862 2.4:-12472089 None:intergenic
TTAATTCAAGAAATGCCAAA+TGG 0.513645 2.4:+12471461 None:intergenic
TTCATTGCAACTATGTCTAC+AGG 0.525326 2.4:-12473421 None:intergenic
TGTGGGAATGTTTGTTGCCA+TGG 0.531917 2.4:-12471751 None:intergenic
GATATTACAAGAGAGTTGTA+CGG 0.536286 2.4:+12473369 MS.gene054011:CDS
GGTGAAACTGGACATGGTGG+TGG 0.551703 2.4:+12473544 MS.gene054011:CDS
ATTGGTTGATTCGGTTCCAA+CGG 0.555616 2.4:+12473594 MS.gene054011:CDS
ACACCAAATGGAGGAGGTGT+TGG 0.560944 2.4:+12473523 MS.gene054011:CDS
AACACCTCCTCCATTTGGTG+TGG 0.563793 2.4:-12473521 None:intergenic
GGATTTGCTATACTTCCAGA+TGG 0.564453 2.4:+12473493 MS.gene054011:CDS
ATGTGCATAAGCTTCTGTGC+TGG 0.567127 2.4:+12471976 MS.gene054011:CDS
ATGGGTTGAGCATGTTGAAG+TGG 0.567383 2.4:+12471617 MS.gene054011:CDS
TAGTGATAACAAACCAAGAT+GGG 0.567631 2.4:+12471923 MS.gene054011:intron
ATGCATTTGGTGCAAAACGT+TGG 0.570053 2.4:+12471688 MS.gene054011:CDS
GATGACCCAGGAAGACCAGC+TGG 0.571107 2.4:+12472084 MS.gene054011:CDS
TTAGTGATAACAAACCAAGA+TGG 0.574822 2.4:+12471922 MS.gene054011:intron
CACAGGAGCTGATGATGTAA+GGG 0.577558 2.4:+12472041 MS.gene054011:CDS
GCACTTAGAACAATGCCAGC+TGG 0.578109 2.4:-12472099 None:intergenic
AACATTCCCACAGTCGATGT+TGG 0.581462 2.4:+12471762 MS.gene054011:CDS
TGTCCACGTGTGTGCTGTTG+AGG 0.582831 2.4:-12472007 None:intergenic
TGAATGTGGTTCTAAATGGA+GGG 0.584402 2.4:+12473440 MS.gene054011:CDS
TGGGATATCCTTTCCAATGG+TGG 0.588001 2.4:+12472927 MS.gene054011:CDS
TGGACAACACTTTCAGGCAC+AGG 0.595843 2.4:+12472024 MS.gene054011:CDS
GAATGTGGTTCTAAATGGAG+GGG 0.601539 2.4:+12473441 MS.gene054011:CDS
GGACAACTCCACCATTGGAA+AGG 0.603145 2.4:-12472935 None:intergenic
AATGCCAAATGGCTACTCAA+AGG 0.605118 2.4:+12471472 None:intergenic
ATTCCCACAGTCGATGTTGG+CGG 0.607641 2.4:+12471765 MS.gene054011:CDS
GGTACCGCCAACATCGACTG+TGG 0.611425 2.4:-12471769 None:intergenic
CAGTGGGATATCCTTTCCAA+TGG 0.619986 2.4:+12472924 MS.gene054011:intron
GGAAGTATAGCAAATCCAGA+TGG 0.620130 2.4:-12473487 None:intergenic
GATTTGCTATACTTCCAGAT+GGG 0.631821 2.4:+12473494 MS.gene054011:CDS
GTACCGCCAACATCGACTGT+GGG 0.642719 2.4:-12471768 None:intergenic
ACAACCACACCAAATGGAGG+AGG 0.644018 2.4:+12473517 MS.gene054011:CDS
GTGCCTCAACAGCACACACG+TGG 0.644853 2.4:+12472004 MS.gene054011:CDS
ATGAATGTGGTTCTAAATGG+AGG 0.647763 2.4:+12473439 MS.gene054011:CDS
AGATGAAAACTCAAGAAGTG+AGG 0.655242 2.4:+12472176 MS.gene054011:CDS
CATGTTGAAGTGGATGATAG+AGG 0.665308 2.4:+12471627 MS.gene054011:CDS
GGGACAACCACACCAAATGG+AGG 0.673800 2.4:+12473514 MS.gene054011:CDS
CGTAAGAGTGTAGATGACCC+AGG 0.679064 2.4:+12472072 MS.gene054011:CDS
GTTGGTGAAACTGGACATGG+TGG 0.688482 2.4:+12473541 MS.gene054011:CDS
TGAAAGACTTGCTAGTGCCA+TGG 0.696212 2.4:+12471734 MS.gene054011:CDS
GGTGTTGGTGAAACTGGACA+TGG 0.714667 2.4:+12473538 MS.gene054011:CDS
AGACATAGTTGCAATGAATG+TGG 0.720864 2.4:+12473426 MS.gene054011:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATGATATAAAAATAAAAA+TGG + chr2.4:12472754-12472773 MS.gene054011:intron 10.0%
!! AATGAATATTTGATCAAAAT+TGG - chr2.4:12473213-12473232 None:intergenic 15.0%
!! AATTTGTAAGAAAAACTATA+AGG - chr2.4:12472677-12472696 None:intergenic 15.0%
!!! ATAGTTTTTCTTACAAATTA+GGG + chr2.4:12472678-12472697 MS.gene054011:intron 15.0%
!!! TATAGTTTTTCTTACAAATT+AGG + chr2.4:12472677-12472696 MS.gene054011:intron 15.0%
!!! TTATCTAATCTTAAAGTTTT+AGG + chr2.4:12472250-12472269 MS.gene054011:intron 15.0%
!!! TTCAATTTAGATTTTTCATA+GGG - chr2.4:12473264-12473283 None:intergenic 15.0%
!!! TTTCAATTTAGATTTTTCAT+AGG - chr2.4:12473265-12473284 None:intergenic 15.0%
!!! TTTTTAAAAAAAATTTCCCT+AGG + chr2.4:12471590-12471609 MS.gene054011:intron 15.0%
!!! TTTTTATATCATTGTGTAAT+TGG - chr2.4:12472748-12472767 None:intergenic 15.0%
!! AAATCTAAATTGAAATGTCT+TGG + chr2.4:12473270-12473289 MS.gene054011:intron 20.0%
!! AATATTTGATCAAAATTGGA+TGG - chr2.4:12473209-12473228 None:intergenic 20.0%
!! AGATGACATAAGATAAAAAA+AGG - chr2.4:12472555-12472574 None:intergenic 20.0%
!! ATGGTATAAAAATAACCAAA+AGG + chr2.4:12472773-12472792 MS.gene054011:intron 20.0%
!! ATTATAGAGTCTTCATTAAA+AGG - chr2.4:12472509-12472528 None:intergenic 20.0%
!! GATGACATAAGATAAAAAAA+GGG - chr2.4:12472554-12472573 None:intergenic 20.0%
!!! AATGTACTGATTTTTTTACT+AGG - chr2.4:12472626-12472645 None:intergenic 20.0%
!!! AGAAATTCAAAAACTCTTTT+TGG - chr2.4:12472153-12472172 None:intergenic 20.0%
!!! ATGTACTGATTTTTTTACTA+GGG - chr2.4:12472625-12472644 None:intergenic 20.0%
!!! ATTTCAAATATTGGTTGATT+CGG + chr2.4:12473585-12473604 MS.gene054011:CDS 20.0%
!!! CAAAAATTTGTTCAAGAATT+TGG - chr2.4:12472802-12472821 None:intergenic 20.0%
!!! CTTTAAGATTAGATAATGAT+TGG - chr2.4:12472246-12472265 None:intergenic 20.0%
!!! TTGTGTAATTGGATATTTTA+TGG - chr2.4:12472737-12472756 None:intergenic 20.0%
! AAAAATTTCCCTAGGTTATA+TGG + chr2.4:12471598-12471617 MS.gene054011:intron 25.0%
! AAAATTTCCCTAGGTTATAT+GGG + chr2.4:12471599-12471618 MS.gene054011:intron 25.0%
! AAGCAATTGATATAAGATGA+TGG - chr2.4:12472428-12472447 None:intergenic 25.0%
! ATCATGAAAAATTCCATCAA+AGG - chr2.4:12471883-12471902 None:intergenic 25.0%
! TATAACGGTTTGATCAAAAT+TGG + chr2.4:12473128-12473147 MS.gene054011:intron 25.0%
!! AATTCAAAAACTCTTTTTGG+TGG - chr2.4:12472150-12472169 None:intergenic 25.0%
!!! AAAGAGTAGTGTTTTTGTAT+TGG - chr2.4:12471793-12471812 None:intergenic 25.0%
!!! CTTGATTATTTTTCTCTATG+TGG + chr2.4:12471551-12471570 MS.gene054011:intron 25.0%
ATAGAGTCTTCATTAAAAGG+AGG - chr2.4:12472506-12472525 None:intergenic 30.0%
GAATTATGCATTCACACATT+TGG - chr2.4:12473242-12473261 None:intergenic 30.0%
GACTGTTGCATTTCAAATAT+TGG + chr2.4:12473576-12473595 MS.gene054011:CDS 30.0%
GATATTACAAGAGAGTTGTA+CGG + chr2.4:12473369-12473388 MS.gene054011:CDS 30.0%
TAGTGATAACAAACCAAGAT+GGG + chr2.4:12471923-12471942 MS.gene054011:intron 30.0%
TTAGTGATAACAAACCAAGA+TGG + chr2.4:12471922-12471941 MS.gene054011:intron 30.0%
TTCGGCTCAAATATCTATAA+CGG + chr2.4:12473113-12473132 MS.gene054011:intron 30.0%
TTGCATTACTGTGTTATCAT+AGG + chr2.4:12472273-12472292 MS.gene054011:intron 30.0%
! GTAATATCAACATGTTGCTT+TGG - chr2.4:12473357-12473376 None:intergenic 30.0%
! TCTCTATGTGGATTAACTAT+AGG + chr2.4:12471563-12471582 MS.gene054011:intron 30.0%
! TGGACTTTTCAATTCAAACT+CGG + chr2.4:12473148-12473167 MS.gene054011:intron 30.0%
!!! GTTTTTTCTTCTTCCTTTGA+TGG + chr2.4:12471867-12471886 MS.gene054011:intron 30.0%
AGACATAGTTGCAATGAATG+TGG + chr2.4:12473426-12473445 MS.gene054011:CDS 35.0%
AGATGAAAACTCAAGAAGTG+AGG + chr2.4:12472176-12472195 MS.gene054011:CDS 35.0%
ATAACCTTTGAGTAGCCATT+TGG - chr2.4:12471479-12471498 None:intergenic 35.0%
ATATTTGAGCCGAATGAATG+TGG - chr2.4:12473107-12473126 None:intergenic 35.0%
ATTGCTAATGGAAGAGATAC+TGG + chr2.4:12472972-12472991 MS.gene054011:CDS 35.0%
GAAATGGCACATATTGCTAA+TGG + chr2.4:12472960-12472979 MS.gene054011:CDS 35.0%
TATTTGAGCCGAATGAATGT+GGG - chr2.4:12473106-12473125 None:intergenic 35.0%
TCTTCATTAAAAGGAGGAGT+CGG - chr2.4:12472500-12472519 None:intergenic 35.0%
TCTTTCACATTGTCGATCTA+GGG - chr2.4:12471721-12471740 None:intergenic 35.0%
TGCAAATTCCCACATTCATT+CGG + chr2.4:12473095-12473114 MS.gene054011:intron 35.0%
TTCATTGCAACTATGTCTAC+AGG - chr2.4:12473424-12473443 None:intergenic 35.0%
TTTCAACTCTCGAAAACAGT+GGG + chr2.4:12472908-12472927 MS.gene054011:intron 35.0%
! AACACTACTCTTTCTCGTTT+TGG + chr2.4:12471800-12471819 MS.gene054011:intron 35.0%
! TTTTCAACTCTCGAAAACAG+TGG + chr2.4:12472907-12472926 MS.gene054011:intron 35.0%
!! ATGAATGTGGTTCTAAATGG+AGG + chr2.4:12473439-12473458 MS.gene054011:CDS 35.0%
!! GATTTGCTATACTTCCAGAT+GGG + chr2.4:12473494-12473513 MS.gene054011:CDS 35.0%
!! GCAATGAATGTGGTTCTAAA+TGG + chr2.4:12473436-12473455 MS.gene054011:CDS 35.0%
!! TAAGTGCTGCAACTTCTTTT+TGG + chr2.4:12472115-12472134 MS.gene054011:CDS 35.0%
!! TAGCAATATGTGCCATTTCT+TGG - chr2.4:12472959-12472978 None:intergenic 35.0%
!! TCAAGAATTTGGTAGCCTTT+TGG - chr2.4:12472791-12472810 None:intergenic 35.0%
!! TGAATGTGGTTCTAAATGGA+GGG + chr2.4:12473440-12473459 MS.gene054011:CDS 35.0%
ACATACTCTTTCTCCCATCT+TGG - chr2.4:12471939-12471958 None:intergenic 40.0%
ATGCTCAACCCATATAACCT+AGG - chr2.4:12471610-12471629 None:intergenic 40.0%
CATGTTGAAGTGGATGATAG+AGG + chr2.4:12471627-12471646 MS.gene054011:CDS 40.0%
GTCTTTCACATTGTCGATCT+AGG - chr2.4:12471722-12471741 None:intergenic 40.0%
TATGTAGCACTTCTTCCATC+TGG + chr2.4:12473472-12473491 MS.gene054011:CDS 40.0%
TGCTCAACCCATATAACCTA+GGG - chr2.4:12471609-12471628 None:intergenic 40.0%
! GGAAGTATAGCAAATCCAGA+TGG - chr2.4:12473490-12473509 None:intergenic 40.0%
!! AAAACTCTTTTTGGTGGCAC+TGG - chr2.4:12472144-12472163 None:intergenic 40.0%
!! ATGCATTTGGTGCAAAACGT+TGG + chr2.4:12471688-12471707 MS.gene054011:CDS 40.0%
!! ATTGGTTGATTCGGTTCCAA+CGG + chr2.4:12473594-12473613 MS.gene054011:CDS 40.0%
!! GAATGTGGTTCTAAATGGAG+GGG + chr2.4:12473441-12473460 MS.gene054011:CDS 40.0%
!! GGAAGAAGTGCTACATAATC+TGG - chr2.4:12473469-12473488 None:intergenic 40.0%
!! GGATTTGCTATACTTCCAGA+TGG + chr2.4:12473493-12473512 MS.gene054011:CDS 40.0%
!! GTTAGTTCTGGACATGCATT+TGG + chr2.4:12471675-12471694 MS.gene054011:CDS 40.0%
!! TACAAGCAGCTTGTTAGTTC+TGG + chr2.4:12471663-12471682 MS.gene054011:CDS 40.0%
AACATTCCCACAGTCGATGT+TGG + chr2.4:12471762-12471781 MS.gene054011:CDS 45.0%
ATGTGCATAAGCTTCTGTGC+TGG + chr2.4:12471976-12471995 MS.gene054011:CDS 45.0%
CAGTGGGATATCCTTTCCAA+TGG + chr2.4:12472924-12472943 MS.gene054011:intron 45.0%
CTGGGTCATCTACACTCTTA+CGG - chr2.4:12472074-12472093 None:intergenic 45.0%
GAAGTGAGGTAAGCAAGCTA+AGG + chr2.4:12472190-12472209 MS.gene054011:intron 45.0%
GAGAGTTGTACGGATTCAAC+AGG + chr2.4:12473379-12473398 MS.gene054011:CDS 45.0%
TGGGATATCCTTTCCAATGG+TGG + chr2.4:12472927-12472946 MS.gene054011:CDS 45.0%
TGGGTCATCTACACTCTTAC+GGG - chr2.4:12472073-12472092 None:intergenic 45.0%
TGGTGGAGTTGTCCAAGAAA+TGG + chr2.4:12472944-12472963 MS.gene054011:CDS 45.0%
TTCTTGGACAACTCCACCAT+TGG - chr2.4:12472943-12472962 None:intergenic 45.0%
! ATGGGTTGAGCATGTTGAAG+TGG + chr2.4:12471617-12471636 MS.gene054011:CDS 45.0%
! CACAGGAGCTGATGATGTAA+GGG + chr2.4:12472041-12472060 MS.gene054011:CDS 45.0%
! TGTGGGAATGTTTGTTGCCA+TGG - chr2.4:12471754-12471773 None:intergenic 45.0%
!! GTCGGTGTCACACTTTGTTT+AGG - chr2.4:12472482-12472501 None:intergenic 45.0%
!! TGAAAGACTTGCTAGTGCCA+TGG + chr2.4:12471734-12471753 MS.gene054011:CDS 45.0%
!! ATTAAATATATTAGTAAATA+TGG - chr2.4:12473042-12473061 None:intergenic 5.0%
ACAACCACACCAAATGGAGG+AGG + chr2.4:12473517-12473536 MS.gene054011:CDS 50.0%
ATTCCCACAGTCGATGTTGG+CGG + chr2.4:12471765-12471784 MS.gene054011:CDS 50.0%
CACACGTGGACAACACTTTC+AGG + chr2.4:12472018-12472037 MS.gene054011:CDS 50.0%
GATGGGACAACCACACCAAA+TGG + chr2.4:12473511-12473530 MS.gene054011:CDS 50.0%
GCACTTAGAACAATGCCAGC+TGG - chr2.4:12472102-12472121 None:intergenic 50.0%
GGACAACTCCACCATTGGAA+AGG - chr2.4:12472938-12472957 None:intergenic 50.0%
TCACCAACACCTCCTCCATT+TGG - chr2.4:12473529-12473548 None:intergenic 50.0%
TGGACAACACTTTCAGGCAC+AGG + chr2.4:12472024-12472043 MS.gene054011:CDS 50.0%
! AACACCTCCTCCATTTGGTG+TGG - chr2.4:12473524-12473543 None:intergenic 50.0%
! ACACCAAATGGAGGAGGTGT+TGG + chr2.4:12473523-12473542 MS.gene054011:CDS 50.0%
! CGTAAGAGTGTAGATGACCC+AGG + chr2.4:12472072-12472091 MS.gene054011:CDS 50.0%
! GCACAGGAGCTGATGATGTA+AGG + chr2.4:12472040-12472059 MS.gene054011:CDS 50.0%
! GTTGGTGAAACTGGACATGG+TGG + chr2.4:12473541-12473560 MS.gene054011:CDS 50.0%
! TTTGGTGTGGTTGTCCCATC+TGG - chr2.4:12473511-12473530 None:intergenic 50.0%
!! GGTGTTGGTGAAACTGGACA+TGG + chr2.4:12473538-12473557 MS.gene054011:CDS 50.0%
GGGACAACCACACCAAATGG+AGG + chr2.4:12473514-12473533 MS.gene054011:CDS 55.0%
GGTGAAACTGGACATGGTGG+TGG + chr2.4:12473544-12473563 MS.gene054011:CDS 55.0%
! GTACCGCCAACATCGACTGT+GGG - chr2.4:12471771-12471790 None:intergenic 55.0%
! TGTCCACGTGTGTGCTGTTG+AGG - chr2.4:12472010-12472029 None:intergenic 55.0%
!! ACAATGCCAGCTGGTCTTCC+TGG - chr2.4:12472093-12472112 None:intergenic 55.0%
!! CAATGCCAGCTGGTCTTCCT+GGG - chr2.4:12472092-12472111 None:intergenic 55.0%
!! GGAGGAGGTGTTGGTGAAAC+TGG + chr2.4:12473532-12473551 MS.gene054011:CDS 55.0%
GATGACCCAGGAAGACCAGC+TGG + chr2.4:12472084-12472103 MS.gene054011:CDS 60.0%
GTGCCTCAACAGCACACACG+TGG + chr2.4:12472004-12472023 MS.gene054011:CDS 60.0%
! GGTACCGCCAACATCGACTG+TGG - chr2.4:12471772-12471791 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 12471473 12473630 12471473 ID=MS.gene054011
chr2.4 mRNA 12471473 12473630 12471473 ID=MS.gene054011.t1;Parent=MS.gene054011
chr2.4 exon 12471473 12471493 12471473 ID=MS.gene054011.t1.exon1;Parent=MS.gene054011.t1
chr2.4 CDS 12471473 12471493 12471473 ID=cds.MS.gene054011.t1;Parent=MS.gene054011.t1
chr2.4 exon 12471612 12471786 12471612 ID=MS.gene054011.t1.exon2;Parent=MS.gene054011.t1
chr2.4 CDS 12471612 12471786 12471612 ID=cds.MS.gene054011.t1;Parent=MS.gene054011.t1
chr2.4 exon 12471926 12472197 12471926 ID=MS.gene054011.t1.exon3;Parent=MS.gene054011.t1
chr2.4 CDS 12471926 12472197 12471926 ID=cds.MS.gene054011.t1;Parent=MS.gene054011.t1
chr2.4 exon 12472927 12473022 12472927 ID=MS.gene054011.t1.exon4;Parent=MS.gene054011.t1
chr2.4 CDS 12472927 12473022 12472927 ID=cds.MS.gene054011.t1;Parent=MS.gene054011.t1
chr2.4 exon 12473340 12473630 12473340 ID=MS.gene054011.t1.exon5;Parent=MS.gene054011.t1
chr2.4 CDS 12473340 12473630 12473340 ID=cds.MS.gene054011.t1;Parent=MS.gene054011.t1
Gene Sequence

>MS.gene054011

ATGCCAAATGGCTACTCAAAGGTTATTTTTGTCACAATATTCTTTAGTACAAAATTAAGATTGTGTTTACATTTGCAACTTGATTATTTTTCTCTATGTGGATTAACTATAGGCTATTTTTTAAAAAAAATTTCCCTAGGTTATATGGGTTGAGCATGTTGAAGTGGATGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTTAGTTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCCTAGATCGACAATGTGAAAGACTTGCTAGTGCCATGGCAACAAACATTCCCACAGTCGATGTTGGCGGTACCAATACAAAAACACTACTCTTTCTCGTTTTGGTTACACAAACATCTCTAATGTTTTTTTTTTCTTCTTTTCATCTAGTTTTTTCTTCTTCCTTTGATGGAATTTTTCATGATTAATTGTGATATTGTAATGTTAGTGATAACAAACCAAGATGGGAGAAAGAGTATGTTGAAACTAGCTGAAAGAATGTGCATAAGCTTCTGTGCTGGAGTGAGTGCCTCAACAGCACACACGTGGACAACACTTTCAGGCACAGGAGCTGATGATGTAAGGGTCATGACCCGTAAGAGTGTAGATGACCCAGGAAGACCAGCTGGCATTGTTCTAAGTGCTGCAACTTCTTTTTGGCTTCCAGTGCCACCAAAAAGAGTTTTTGAATTTCTTAGAGATGAAAACTCAAGAAGTGAGGTAAGCAAGCTAAGGAATTATTTCAAATGAAAAAACAATTATGCACCAATCATTATCTAATCTTAAAGTTTTAGGTTGCATTACTGTGTTATCATAGGTTGTTAGATTATTCTTGATTAAGTAAAATTGCTTTGTTTATAGTGTATGACGTATTTATTCTATACTAAGCTCATATGAAGTCATCATCTTATATGATTTTATATTAGCATACGTCTTGTTTCTACTCTCCATCATCTTATATCAATTGCTTTGAATTGCATAAATACATCTTTGTCAATTTGCCTAAACAAAGTGTGACACCGACTCCTCCTTTTAATGAAGACTCTATAATAACTTTTGCATGAAATTTTGTTCCCTTTTTTTATCTTATGTCATCTGACTTTTTCATAAATTATTGTCAAATTATTATTCAATCATGTATTATCCCTAGTAAAAAAATCAGTACATTTACATCAATGTTGTTTTTATTATATCGTCCTTATAGTTTTTCTTACAAATTAGGGTTTCTTTTGTTCAAGTGTACATTTTTAACTACTCCATAAAATATCCAATTACACAATGATATAAAAATAAAAATGGTATAAAAATAACCAAAAGGCTACCAAATTCTTGAACAAATTTTTGCTGATTAATAATATTATCATCTTCATTTTGATCTTCATCTTCATCTTGATTAAATAAATTATTTATATATGATTCATCTAACTAATTTTCAACTCTCGAAAACAGTGGGATATCCTTTCCAATGGTGGAGTTGTCCAAGAAATGGCACATATTGCTAATGGAAGAGATACTGGAAATTGTGTTTCTCTACTTCGAGTGAATGTATGTTGACTTTATGCCATATTTACTAATATATTTAATTATTTTTATTTAATATGAAAGCTATTGTCAATATGCAAATTCCCACATTCATTCGGCTCAAATATCTATAACGGTTTGATCAAAATTGGACTTTTCAATTCAAACTCGGTATTTTGAATTACAAAATTAAAACAAAAATTTGCACCATCCAATTTTGATCAAATATTCATTGATGTTCCAAATGTGTGAATGCATAATTCCCTATGAAAAATCTAAATTGAAATGTCTTGGTTATTTTGACTAAACTATATTTGCTATATTAAATTATTTTCATGTAGAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGTACGGATTCAACAGGATCATTTGTGATATATGCACCTGTAGACATAGTTGCAATGAATGTGGTTCTAAATGGAGGGGATCCAGATTATGTAGCACTTCTTCCATCTGGATTTGCTATACTTCCAGATGGGACAACCACACCAAATGGAGGAGGTGTTGGTGAAACTGGACATGGTGGTGGATCTCTTTTGACTGTTGCATTTCAAATATTGGTTGATTCGGTTCCAACGGCAAAACTTCTCTTG

Protein sequence

>MS.gene054011.t1

MPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCERLASAMATNIPTVDVGVITNQDGRKSMLKLAERMCISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPAGIVLSAATSFWLPVPPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTPNGGGVGETGHGGGSLLTVAFQILVDSVPTAKLLL