Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90874.t1 | KHN23130.1 | 95.6 | 114 | 5 | 0 | 1 | 114 | 555 | 668 | 2.10E-55 | 224.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90874.t1 | Q59536 | 64.9 | 114 | 40 | 0 | 1 | 114 | 546 | 659 | 4.5e-38 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90874.t1 | I1NF29 | 95.6 | 114 | 5 | 0 | 1 | 114 | 628 | 741 | 1.5e-55 | 224.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057102 | MS.gene90874 | 0.805875 | 1.08E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene90874 | 0.808331 | 3.26E-50 | -1.69E-46 |
| MS.gene059900 | MS.gene90874 | -0.804927 | 1.71E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90874.t1 | MTR_1g115230 | 94.737 | 114 | 6 | 0 | 1 | 114 | 564 | 677 | 7.21e-72 | 227 |
| MS.gene90874.t1 | MTR_5g048280 | 38.462 | 117 | 69 | 2 | 1 | 114 | 662 | 778 | 9.51e-21 | 87.0 |
| MS.gene90874.t1 | MTR_8g079030 | 40.000 | 95 | 55 | 2 | 3 | 96 | 655 | 748 | 2.77e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90874.t1 | AT1G50380 | 84.211 | 114 | 18 | 0 | 1 | 114 | 571 | 684 | 7.52e-65 | 209 |
| MS.gene90874.t1 | AT1G50380 | 84.211 | 114 | 18 | 0 | 1 | 114 | 637 | 750 | 1.62e-64 | 209 |
| MS.gene90874.t1 | AT1G69020 | 39.316 | 117 | 68 | 2 | 1 | 114 | 616 | 732 | 5.90e-20 | 84.7 |
| MS.gene90874.t1 | AT1G69020 | 39.316 | 117 | 68 | 2 | 1 | 114 | 648 | 764 | 5.92e-20 | 84.7 |
| MS.gene90874.t1 | AT5G66960 | 42.105 | 95 | 53 | 2 | 3 | 96 | 661 | 754 | 1.95e-14 | 68.9 |
Find 35 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTACAGCTGGATTAAA+TGG | 0.255776 | 1.4:-87313833 | MS.gene90874:intron |
| TACATTATCAACAAGGGAAT+AGG | 0.376538 | 1.4:+87314032 | None:intergenic |
| TGCTGTTGCCAGAGTACCTT+TGG | 0.379745 | 1.4:-87316009 | MS.gene90874:CDS |
| TGTTGTTTAAATGTGAGCTT+GGG | 0.399931 | 1.4:-87313577 | MS.gene90874:CDS |
| TTTAAATGTGAGCTTGGGGC+TGG | 0.402664 | 1.4:-87313572 | MS.gene90874:CDS |
| CCACATATTCTTGTTACAGC+TGG | 0.425203 | 1.4:-87313842 | MS.gene90874:CDS |
| TATGAGACCAGATTTATTCA+AGG | 0.429355 | 1.4:-87316033 | MS.gene90874:CDS |
| TTTATAGTGAGCATGTGTTA+TGG | 0.441690 | 1.4:-87313349 | MS.gene90874:intron |
| ACAGCAGCCTTGAATAAATC+TGG | 0.442080 | 1.4:+87316026 | None:intergenic |
| GAAGTAGTGAGAGGAATAGT+TGG | 0.463287 | 1.4:+87315960 | None:intergenic |
| AAGTAGAATTCCTCCTTCCT+AGG | 0.474833 | 1.4:+87314066 | None:intergenic |
| CCAGCTGTAACAAGAATATG+TGG | 0.480307 | 1.4:+87313842 | None:intergenic |
| CAAAGTTCGTGGCAAAATTG+AGG | 0.482652 | 1.4:-87313625 | MS.gene90874:CDS |
| CTGTTGTTTAAATGTGAGCT+TGG | 0.484448 | 1.4:-87313578 | MS.gene90874:CDS |
| TTCTGAACCTGCAAAGTTCG+TGG | 0.496672 | 1.4:-87313636 | MS.gene90874:CDS |
| TGTAGGAATGGGGTGATCCT+AGG | 0.505042 | 1.4:-87314083 | MS.gene90874:intron |
| AAAGTTCGTGGCAAAATTGA+GGG | 0.507662 | 1.4:-87313624 | MS.gene90874:CDS |
| TTCCTCTCACTACTTCCGAC+TGG | 0.517796 | 1.4:-87315953 | MS.gene90874:CDS |
| AACATCCACCAAAGGTACTC+TGG | 0.534806 | 1.4:+87316001 | None:intergenic |
| TGTTGCCAGAGTACCTTTGG+TGG | 0.562757 | 1.4:-87316006 | MS.gene90874:CDS |
| TCCTCTCACTACTTCCGACT+GGG | 0.571133 | 1.4:-87315952 | MS.gene90874:CDS |
| TGTTCTTACATTATCAACAA+GGG | 0.574837 | 1.4:+87314026 | None:intergenic |
| GTTATGGACTTCTACAGCTA+AGG | 0.586287 | 1.4:-87313333 | MS.gene90874:CDS |
| TTGTTCTTACATTATCAACA+AGG | 0.588588 | 1.4:+87314025 | None:intergenic |
| GGAATGGGGTGATCCTAGGA+AGG | 0.598189 | 1.4:-87314079 | MS.gene90874:CDS |
| CTTATGTTACTGTAGGAATG+GGG | 0.605360 | 1.4:-87314093 | MS.gene90874:intron |
| AAAGAAATTTACCTCCCAGT+CGG | 0.627238 | 1.4:+87315938 | None:intergenic |
| TCCCAGTCGGAAGTAGTGAG+AGG | 0.656613 | 1.4:+87315951 | None:intergenic |
| GTTGTTTAAATGTGAGCTTG+GGG | 0.656860 | 1.4:-87313576 | MS.gene90874:CDS |
| GGTTCAGAATACAAAACACG+TGG | 0.664416 | 1.4:+87313650 | None:intergenic |
| CAGCTGTAACAAGAATATGT+GGG | 0.675217 | 1.4:+87313843 | None:intergenic |
| ATGGGGTGATCCTAGGAAGG+AGG | 0.677198 | 1.4:-87314076 | MS.gene90874:CDS |
| GTTGTCACAACATCCACCAA+AGG | 0.686944 | 1.4:+87315993 | None:intergenic |
| TCTCACTACTTCCGACTGGG+AGG | 0.702049 | 1.4:-87315949 | MS.gene90874:intron |
| GTTCAGAATACAAAACACGT+GGG | 0.759019 | 1.4:+87313651 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATTATATTAATTTTTT+TGG | + | chr1.4:87314075-87314094 | None:intergenic | 0.0% |
| !!! | TGTGTTTTATTTTATATAAA+GGG | + | chr1.4:87313928-87313947 | None:intergenic | 10.0% |
| !!! | TTGTGTTTTATTTTATATAA+AGG | + | chr1.4:87313929-87313948 | None:intergenic | 10.0% |
| !!! | TTTTTTTTAAGAAATTCTAT+AGG | - | chr1.4:87314326-87314345 | MS.gene90874:intron | 10.0% |
| !! | TAAAACATTCTATTATTTAG+TGG | - | chr1.4:87315586-87315605 | MS.gene90874:intron | 15.0% |
| !!! | TAATTTTTTTGGAAACAAAT+TGG | + | chr1.4:87314064-87314083 | None:intergenic | 15.0% |
| !!! | TGAAAATTTTAGTTTAATGA+AGG | - | chr1.4:87315919-87315938 | MS.gene90874:intron | 15.0% |
| !!! | TTTAAACTTGTTTAGTATTT+GGG | - | chr1.4:87315844-87315863 | MS.gene90874:intron | 15.0% |
| !!! | TTTTAAACTTGTTTAGTATT+TGG | - | chr1.4:87315843-87315862 | MS.gene90874:intron | 15.0% |
| !!! | TTTTATATAAAGGGTAAATT+TGG | + | chr1.4:87313919-87313938 | None:intergenic | 15.0% |
| !! | AAAAAAATAAGGAAGGTTAA+AGG | + | chr1.4:87313786-87313805 | None:intergenic | 20.0% |
| !! | AAAATCAATTAAAACTAGAG+AGG | + | chr1.4:87313830-87313849 | None:intergenic | 20.0% |
| !! | AAAATTTAGAAATACATACC+TGG | - | chr1.4:87314563-87314582 | MS.gene90874:intron | 20.0% |
| !! | AAATCATGTTGAAATTGTTT+CGG | + | chr1.4:87314928-87314947 | None:intergenic | 20.0% |
| !! | ACAAGTTTAAAAACAAACAA+CGG | + | chr1.4:87315835-87315854 | None:intergenic | 20.0% |
| !! | ACTCAGTTTATTTATCAATT+TGG | + | chr1.4:87314832-87314851 | None:intergenic | 20.0% |
| !! | TATATAATCTAAGTTTGATC+TGG | + | chr1.4:87314365-87314384 | None:intergenic | 20.0% |
| !! | TTACATTTCCGAAAATTATT+CGG | + | chr1.4:87314498-87314517 | None:intergenic | 20.0% |
| !!! | AATTTGTTTGTCTTTTAAAC+TGG | - | chr1.4:87315050-87315069 | MS.gene90874:intron | 20.0% |
| !!! | ATTTTATAACTTGTAAGAGA+AGG | - | chr1.4:87313719-87313738 | MS.gene90874:intron | 20.0% |
| !!! | GAATTTTAAAAGATTTGTAG+GGG | - | chr1.4:87314689-87314708 | MS.gene90874:intron | 20.0% |
| !!! | GGAATTTTAAAAGATTTGTA+GGG | - | chr1.4:87314688-87314707 | MS.gene90874:intron | 20.0% |
| !!! | GTAATGTTTTAACATTCTAT+TGG | - | chr1.4:87314292-87314311 | MS.gene90874:intron | 20.0% |
| !!! | TGAGTTTTCCAAAAAAAATT+CGG | - | chr1.4:87314521-87314540 | MS.gene90874:intron | 20.0% |
| !!! | TGGAATTTTAAAAGATTTGT+AGG | - | chr1.4:87314687-87314706 | MS.gene90874:intron | 20.0% |
| !!! | TTAAACTTGTTTAGTATTTG+GGG | - | chr1.4:87315845-87315864 | MS.gene90874:intron | 20.0% |
| !!! | TTTGAATCATTTTCATATGT+TGG | + | chr1.4:87313454-87313473 | None:intergenic | 20.0% |
| !!! | TTTTTAAGAAATTCTATAGG+AGG | - | chr1.4:87314329-87314348 | MS.gene90874:intron | 20.0% |
| ! | AAAGGATTTATTGTGATTTC+CGG | - | chr1.4:87314440-87314459 | MS.gene90874:intron | 25.0% |
| ! | AAATCACAATAAATCCTTTC+CGG | + | chr1.4:87314439-87314458 | None:intergenic | 25.0% |
| ! | AAGAATAAAGCATGAGATTA+AGG | + | chr1.4:87314221-87314240 | None:intergenic | 25.0% |
| ! | AATCATGTTGAAATTGTTTC+GGG | + | chr1.4:87314927-87314946 | None:intergenic | 25.0% |
| ! | ATAAAAGGTTAAATAGCACA+AGG | - | chr1.4:87314656-87314675 | MS.gene90874:intron | 25.0% |
| ! | GTCATGAGAGAAAAAAAATA+AGG | + | chr1.4:87313797-87313816 | None:intergenic | 25.0% |
| ! | TAAAACTCACATACTTATCT+CGG | + | chr1.4:87315123-87315142 | None:intergenic | 25.0% |
| ! | TAAAAGGTTAAATAGCACAA+GGG | - | chr1.4:87314657-87314676 | MS.gene90874:intron | 25.0% |
| ! | TCAGACAAAAAATAAATAGG+CGG | + | chr1.4:87315382-87315401 | None:intergenic | 25.0% |
| ! | TGAGAGAAAAAAAATAAGGA+AGG | + | chr1.4:87313793-87313812 | None:intergenic | 25.0% |
| ! | TGCTCAGACAAAAAATAAAT+AGG | + | chr1.4:87315385-87315404 | None:intergenic | 25.0% |
| ! | TGTTCTTACATTATCAACAA+GGG | + | chr1.4:87315322-87315341 | None:intergenic | 25.0% |
| ! | TTCCAAAAAAAATTCGGAAA+AGG | - | chr1.4:87314527-87314546 | MS.gene90874:intron | 25.0% |
| ! | TTGTTCTTACATTATCAACA+AGG | + | chr1.4:87315323-87315342 | None:intergenic | 25.0% |
| ! | TTTAAACTGGTATTAAGAAG+AGG | - | chr1.4:87315063-87315082 | MS.gene90874:intron | 25.0% |
| ! | TTTAGTGGTCACTAATAATT+TGG | - | chr1.4:87315601-87315620 | MS.gene90874:intron | 25.0% |
| !! | AAATTCTATAGGAGGATTTT+AGG | - | chr1.4:87314337-87314356 | MS.gene90874:intron | 25.0% |
| !! | AATTTTTATTCTCTCCTGTA+AGG | - | chr1.4:87315406-87315425 | MS.gene90874:intron | 25.0% |
| !! | ATACTTTTAATGCATCAAGT+TGG | + | chr1.4:87314975-87314994 | None:intergenic | 25.0% |
| !! | ATATAATTTTGTGCACATAC+TGG | - | chr1.4:87314867-87314886 | MS.gene90874:intron | 25.0% |
| !! | ATCATTTTCATATGTTGGTA+TGG | + | chr1.4:87313449-87313468 | None:intergenic | 25.0% |
| !!! | AACATTTCTAGTATACATAC+CGG | + | chr1.4:87314462-87314481 | None:intergenic | 25.0% |
| !!! | AACCTTTTCCGAATTTTTTT+TGG | + | chr1.4:87314532-87314551 | None:intergenic | 25.0% |
| !!! | ACCATTTTTTTCAGAAAATG+TGG | + | chr1.4:87313967-87313986 | None:intergenic | 25.0% |
| !!! | ATGTTTTAACATTCTATTGG+AGG | - | chr1.4:87314295-87314314 | MS.gene90874:intron | 25.0% |
| !!! | ATTTTTTTCAGAAAATGTGG+GGG | + | chr1.4:87313964-87313983 | None:intergenic | 25.0% |
| !!! | CATTTTTTTCAGAAAATGTG+GGG | + | chr1.4:87313965-87313984 | None:intergenic | 25.0% |
| !!! | CCATTTTTTTCAGAAAATGT+GGG | + | chr1.4:87313966-87313985 | None:intergenic | 25.0% |
| !!! | GATTTCTTTTGCTTTTCTTT+TGG | - | chr1.4:87315213-87315232 | MS.gene90874:intron | 25.0% |
| AAAAAATAAATAGGCGGTGA+AGG | + | chr1.4:87315376-87315395 | None:intergenic | 30.0% | |
| AAAAGGTTAAATAGCACAAG+GGG | - | chr1.4:87314658-87314677 | MS.gene90874:intron | 30.0% | |
| AAAGGGTAAATTTGGAAGTT+GGG | + | chr1.4:87313911-87313930 | None:intergenic | 30.0% | |
| AAGAAAGCTTACTGTTTGTT+AGG | + | chr1.4:87314014-87314033 | None:intergenic | 30.0% | |
| AAGGTCAATTAAAACTAGAG+AGG | + | chr1.4:87313767-87313786 | None:intergenic | 30.0% | |
| AAGTAAACAAGCAAATGTCT+CGG | - | chr1.4:87315006-87315025 | MS.gene90874:intron | 30.0% | |
| AATACAAATGCATGCTGTTA+GGG | + | chr1.4:87313662-87313681 | None:intergenic | 30.0% | |
| AATTCGGAAAAGGTTTATAG+TGG | - | chr1.4:87314537-87314556 | MS.gene90874:intron | 30.0% | |
| ACCAAAAAAAAAACATGCCA+GGG | + | chr1.4:87314767-87314786 | None:intergenic | 30.0% | |
| AGAACAAATACTGCACTTAA+TGG | - | chr1.4:87315336-87315355 | MS.gene90874:intron | 30.0% | |
| ATTTCACGAAAATCTTGAAC+CGG | - | chr1.4:87314417-87314436 | MS.gene90874:intron | 30.0% | |
| CAATTAAAACTAGAGAGGAT+GGG | + | chr1.4:87313825-87313844 | None:intergenic | 30.0% | |
| CATTTGCTTGTTTACTTTCA+TGG | + | chr1.4:87315003-87315022 | None:intergenic | 30.0% | |
| TAAAGGGTAAATTTGGAAGT+TGG | + | chr1.4:87313912-87313931 | None:intergenic | 30.0% | |
| TACATTATCAACAAGGGAAT+AGG | + | chr1.4:87315316-87315335 | None:intergenic | 30.0% | |
| TACCAAAAAAAAAACATGCC+AGG | + | chr1.4:87314768-87314787 | None:intergenic | 30.0% | |
| TCAATTAAAACTAGAGAGGA+TGG | + | chr1.4:87313826-87313845 | None:intergenic | 30.0% | |
| TGATTTCCTTATGTTACTGT+AGG | - | chr1.4:87315245-87315264 | MS.gene90874:intron | 30.0% | |
| TTTATAGTGAGCATGTGTTA+TGG | - | chr1.4:87315996-87316015 | MS.gene90874:CDS | 30.0% | |
| ! | TGTTGTTTAAATGTGAGCTT+GGG | - | chr1.4:87315768-87315787 | MS.gene90874:intron | 30.0% |
| !! | AGTTTAATGAAGGTACTATG+TGG | - | chr1.4:87315929-87315948 | MS.gene90874:intron | 30.0% |
| !! | CCCACATTTTCTGAAAAAAA+TGG | - | chr1.4:87313963-87313982 | MS.gene90874:intron | 30.0% |
| !! | TCTCATGGTGTCTTTTAAAA+TGG | - | chr1.4:87313510-87313529 | MS.gene90874:intron | 30.0% |
| !!! | CTCATGGTGTCTTTTAAAAT+GGG | - | chr1.4:87313511-87313530 | MS.gene90874:intron | 30.0% |
| !!! | TTTTTTTGGTAAAACATCCC+TGG | - | chr1.4:87314777-87314796 | MS.gene90874:intron | 30.0% |
| !!! | TTTTTTTTCTCTCATGACAC+TGG | - | chr1.4:87313799-87313818 | MS.gene90874:intron | 30.0% |
| AAAGAAATTTACCTCCCAGT+CGG | + | chr1.4:87313410-87313429 | None:intergenic | 35.0% | |
| AAAGTTCGTGGCAAAATTGA+GGG | - | chr1.4:87315721-87315740 | MS.gene90874:intron | 35.0% | |
| AAGGGTAAATTTGGAAGTTG+GGG | + | chr1.4:87313910-87313929 | None:intergenic | 35.0% | |
| AATACAGAAGTAACATGCCA+GGG | + | chr1.4:87314797-87314816 | None:intergenic | 35.0% | |
| AATAGCACAAGGGGTAAAAT+TGG | - | chr1.4:87314667-87314686 | MS.gene90874:intron | 35.0% | |
| AATTATATGACACAGCAGCA+AGG | + | chr1.4:87314855-87314874 | None:intergenic | 35.0% | |
| AGCTACTATTTGTAGCTTCA+TGG | + | chr1.4:87314951-87314970 | None:intergenic | 35.0% | |
| ATACAAATGCATGCTGTTAG+GGG | + | chr1.4:87313661-87313680 | None:intergenic | 35.0% | |
| ATACCTGGAAGAATATCATG+TGG | - | chr1.4:87314578-87314597 | MS.gene90874:intron | 35.0% | |
| CAATACAAATGCATGCTGTT+AGG | + | chr1.4:87313663-87313682 | None:intergenic | 35.0% | |
| CAGCTGTAACAAGAATATGT+GGG | + | chr1.4:87315505-87315524 | None:intergenic | 35.0% | |
| CCTTATGTTACTGTAGGAAT+GGG | - | chr1.4:87315251-87315270 | MS.gene90874:intron | 35.0% | |
| CGTTGAAAAGAATACGATCA+TGG | + | chr1.4:87314141-87314160 | None:intergenic | 35.0% | |
| CTTATGTTACTGTAGGAATG+GGG | - | chr1.4:87315252-87315271 | MS.gene90874:intron | 35.0% | |
| CTTGTTACAGCTGGATTAAA+TGG | - | chr1.4:87315512-87315531 | MS.gene90874:intron | 35.0% | |
| GTGGTCACTAATAATTTGGT+TGG | - | chr1.4:87315605-87315624 | MS.gene90874:intron | 35.0% | |
| GTTCAGAATACAAAACACGT+GGG | + | chr1.4:87315697-87315716 | None:intergenic | 35.0% | |
| GTTGTTTAAATGTGAGCTTG+GGG | - | chr1.4:87315769-87315788 | MS.gene90874:intron | 35.0% | |
| TAATACAGAAGTAACATGCC+AGG | + | chr1.4:87314798-87314817 | None:intergenic | 35.0% | |
| TACCTGGAAGAATATCATGT+GGG | - | chr1.4:87314579-87314598 | MS.gene90874:intron | 35.0% | |
| TATCTCGGAAGGAATATAAG+CGG | + | chr1.4:87315108-87315127 | None:intergenic | 35.0% | |
| TCATTCCATACGATATCATG+TGG | + | chr1.4:87315195-87315214 | None:intergenic | 35.0% | |
| TCCCTGTGATTTCTTCTAAA+CGG | + | chr1.4:87313853-87313872 | None:intergenic | 35.0% | |
| TCCGTTTAGAAGAAATCACA+GGG | - | chr1.4:87313849-87313868 | MS.gene90874:CDS | 35.0% | |
| TCCTTATGTTACTGTAGGAA+TGG | - | chr1.4:87315250-87315269 | MS.gene90874:intron | 35.0% | |
| TTATTCTCTCCTGTAAGGAA+TGG | - | chr1.4:87315411-87315430 | MS.gene90874:intron | 35.0% | |
| TTCCGTTTAGAAGAAATCAC+AGG | - | chr1.4:87313848-87313867 | MS.gene90874:CDS | 35.0% | |
| TTGTTTCGGGAAATGAGAAA+TGG | + | chr1.4:87314914-87314933 | None:intergenic | 35.0% | |
| TTTCATATGTTGGTATGGAG+TGG | + | chr1.4:87313444-87313463 | None:intergenic | 35.0% | |
| ! | ACGTGTTTTATGTTGCCTTT+AGG | - | chr1.4:87313560-87313579 | MS.gene90874:CDS | 35.0% |
| ! | CGAGTCTTCCGAATAATTTT+CGG | - | chr1.4:87314487-87314506 | MS.gene90874:intron | 35.0% |
| ! | CGTTTTCTTATGCTTCCTAA+AGG | + | chr1.4:87313578-87313597 | None:intergenic | 35.0% |
| ! | CTGTTGTTTAAATGTGAGCT+TGG | - | chr1.4:87315767-87315786 | MS.gene90874:intron | 35.0% |
| ! | TGATCGTATTCTTTTCAACG+AGG | - | chr1.4:87314141-87314160 | MS.gene90874:intron | 35.0% |
| ! | TTCTATTTCTCGTTCTATGC+AGG | - | chr1.4:87315463-87315482 | MS.gene90874:intron | 35.0% |
| ! | TTCTGAAAAAAATGGTCGCT+GGG | - | chr1.4:87313971-87313990 | MS.gene90874:intron | 35.0% |
| ! | TTCTGTTTGACTTTCTCTCA+TGG | - | chr1.4:87313495-87313514 | MS.gene90874:intron | 35.0% |
| ! | TTTCTGAAAAAAATGGTCGC+TGG | - | chr1.4:87313970-87313989 | MS.gene90874:intron | 35.0% |
| !! | ATGTCTCTGTTCTCTTGTTT+TGG | - | chr1.4:87315880-87315899 | MS.gene90874:intron | 35.0% |
| !! | ATTTTGTGCACATACTGGTT+TGG | - | chr1.4:87314872-87314891 | MS.gene90874:intron | 35.0% |
| !!! | CTGTTCTCTTGTTTTGGTTA+CGG | - | chr1.4:87315886-87315905 | MS.gene90874:intron | 35.0% |
| !!! | TCCCTGGCATGTTTTTTTTT+TGG | - | chr1.4:87314763-87314782 | MS.gene90874:intron | 35.0% |
| AAATTTGGAAGTTGGGGTCA+AGG | + | chr1.4:87313904-87313923 | None:intergenic | 40.0% | |
| AAGTAGAATTCCTCCTTCCT+AGG | + | chr1.4:87315282-87315301 | None:intergenic | 40.0% | |
| ACAGCAGCCTTGAATAAATC+TGG | + | chr1.4:87313322-87313341 | None:intergenic | 40.0% | |
| ACCTGGAAGAATATCATGTG+GGG | - | chr1.4:87314580-87314599 | MS.gene90874:intron | 40.0% | |
| ACGAAAATCTTGAACCGGAA+AGG | - | chr1.4:87314422-87314441 | MS.gene90874:intron | 40.0% | |
| ACTCACATACTTATCTCGGA+AGG | + | chr1.4:87315119-87315138 | None:intergenic | 40.0% | |
| ATAGTTCAGTGCCAAGAATC+AGG | + | chr1.4:87315546-87315565 | None:intergenic | 40.0% | |
| CAAAGTTCGTGGCAAAATTG+AGG | - | chr1.4:87315720-87315739 | MS.gene90874:intron | 40.0% | |
| CAACTCCACATGATATCGTA+TGG | - | chr1.4:87315187-87315206 | MS.gene90874:intron | 40.0% | |
| CCACATATTCTTGTTACAGC+TGG | - | chr1.4:87315503-87315522 | MS.gene90874:intron | 40.0% | |
| CCAGCTGTAACAAGAATATG+TGG | + | chr1.4:87315506-87315525 | None:intergenic | 40.0% | |
| CCCATTCCTACAGTAACATA+AGG | + | chr1.4:87315254-87315273 | None:intergenic | 40.0% | |
| GAAGTAGTGAGAGGAATAGT+TGG | + | chr1.4:87313388-87313407 | None:intergenic | 40.0% | |
| GGGGTCAAGGTATAATAGTA+GGG | + | chr1.4:87313891-87313910 | None:intergenic | 40.0% | |
| GGGTCAAGGTATAATAGTAG+GGG | + | chr1.4:87313890-87313909 | None:intergenic | 40.0% | |
| GGTTCAGAATACAAAACACG+TGG | + | chr1.4:87315698-87315717 | None:intergenic | 40.0% | |
| GTTATGGACTTCTACAGCTA+AGG | - | chr1.4:87316012-87316031 | MS.gene90874:CDS | 40.0% | |
| TCCTAGTAACCATTCCTTAC+AGG | + | chr1.4:87315423-87315442 | None:intergenic | 40.0% | |
| TCCTGTAAGGAATGGTTACT+AGG | - | chr1.4:87315419-87315438 | MS.gene90874:intron | 40.0% | |
| TGGGGTCAAGGTATAATAGT+AGG | + | chr1.4:87313892-87313911 | None:intergenic | 40.0% | |
| TGGTAAGCATACCTGATTCT+TGG | - | chr1.4:87315532-87315551 | MS.gene90874:intron | 40.0% | |
| TTCTTCTTCAACGAGAGAAG+TGG | + | chr1.4:87314193-87314212 | None:intergenic | 40.0% | |
| ! | AATTTTGCCACGAACTTTGC+AGG | + | chr1.4:87315719-87315738 | None:intergenic | 40.0% |
| ! | AGCTTACTGTTTGTTAGGAG+TGG | + | chr1.4:87314009-87314028 | None:intergenic | 40.0% |
| ! | AGGTATAATAGTAGGGGTGT+AGG | + | chr1.4:87313884-87313903 | None:intergenic | 40.0% |
| ! | GCTTACTGTTTGTTAGGAGT+GGG | + | chr1.4:87314008-87314027 | None:intergenic | 40.0% |
| ! | GGTATAATAGTAGGGGTGTA+GGG | + | chr1.4:87313883-87313902 | None:intergenic | 40.0% |
| ! | TTAAAACTAGAGAGGTGTGC+AGG | + | chr1.4:87313759-87313778 | None:intergenic | 40.0% |
| !! | ACATACTGGTTTGGATGTGT+GGG | - | chr1.4:87314881-87314900 | MS.gene90874:intron | 40.0% |
| !! | CTGTTAGGGGAGTATTCATT+CGG | + | chr1.4:87313648-87313667 | None:intergenic | 40.0% |
| !!! | GACTTTTTTCGAAGTCAGGA+AGG | - | chr1.4:87315795-87315814 | MS.gene90874:intron | 40.0% |
| !!! | TCTCTTGTTTTGGTTACGGT+GGG | - | chr1.4:87315890-87315909 | MS.gene90874:intron | 40.0% |
| !!! | TTCTCTTGTTTTGGTTACGG+TGG | - | chr1.4:87315889-87315908 | MS.gene90874:intron | 40.0% |
| AAATAGGCGGTGAAGGTTAG+AGG | + | chr1.4:87315369-87315388 | None:intergenic | 45.0% | |
| AAGTACATGTGTCGGGGTAT+AGG | - | chr1.4:87314715-87314734 | MS.gene90874:intron | 45.0% | |
| AGTACATGTGTCGGGGTATA+GGG | - | chr1.4:87314716-87314735 | MS.gene90874:intron | 45.0% | |
| ATACTGCACTTAATGGCCTC+TGG | - | chr1.4:87315343-87315362 | MS.gene90874:intron | 45.0% | |
| CAGAAAATGTGGGGGTGAAA+GGG | + | chr1.4:87313956-87313975 | None:intergenic | 45.0% | |
| CCTGGAAGAATATCATGTGG+GGG | - | chr1.4:87314581-87314600 | MS.gene90874:intron | 45.0% | |
| GATGTCACTGTGAGATGCAT+TGG | - | chr1.4:87313612-87313631 | MS.gene90874:CDS | 45.0% | |
| GTTGTCACAACATCCACCAA+AGG | + | chr1.4:87313355-87313374 | None:intergenic | 45.0% | |
| TCAGAAAATGTGGGGGTGAA+AGG | + | chr1.4:87313957-87313976 | None:intergenic | 45.0% | |
| TTCTCGTTCTATGCAGGTCA+AGG | - | chr1.4:87315469-87315488 | MS.gene90874:intron | 45.0% | |
| TTCTGAACCTGCAAAGTTCG+TGG | - | chr1.4:87315709-87315728 | MS.gene90874:intron | 45.0% | |
| TTTAAATGTGAGCTTGGGGC+TGG | - | chr1.4:87315773-87315792 | MS.gene90874:intron | 45.0% | |
| ! | AGGGGTGAAAGTACATGTGT+CGG | - | chr1.4:87314707-87314726 | MS.gene90874:intron | 45.0% |
| !! | AACATCCACCAAAGGTACTC+TGG | + | chr1.4:87313347-87313366 | None:intergenic | 45.0% |
| !! | CACATACTGGTTTGGATGTG+TGG | - | chr1.4:87314880-87314899 | MS.gene90874:intron | 45.0% |
| !! | GAGGCACTGCACTTAACATA+TGG | - | chr1.4:87315082-87315101 | MS.gene90874:intron | 45.0% |
| !!! | GCTGGACTTTTTTCGAAGTC+AGG | - | chr1.4:87315791-87315810 | MS.gene90874:intron | 45.0% |
| !! | ATAAAAAATTAATGTATAAA+AGG | - | chr1.4:87314641-87314660 | MS.gene90874:intron | 5.0% |
| CCAAATCACAGCTACATCCC+TGG | - | chr1.4:87314747-87314766 | MS.gene90874:intron | 50.0% | |
| CCAGGGATGTAGCTGTGATT+TGG | + | chr1.4:87314750-87314769 | None:intergenic | 50.0% | |
| CCCCCACATGATATTCTTCC+AGG | + | chr1.4:87314584-87314603 | None:intergenic | 50.0% | |
| TCCTCTCACTACTTCCGACT+GGG | - | chr1.4:87313393-87313412 | MS.gene90874:intron | 50.0% | |
| TGTAGGAATGGGGTGATCCT+AGG | - | chr1.4:87315262-87315281 | MS.gene90874:intron | 50.0% | |
| TTCCTCTCACTACTTCCGAC+TGG | - | chr1.4:87313392-87313411 | MS.gene90874:intron | 50.0% | |
| ! | GGGGTGAAAGTACATGTGTC+GGG | - | chr1.4:87314708-87314727 | MS.gene90874:intron | 50.0% |
| ! | GGGTGAAAGTACATGTGTCG+GGG | - | chr1.4:87314709-87314728 | MS.gene90874:intron | 50.0% |
| ! | TGCTGTTGCCAGAGTACCTT+TGG | - | chr1.4:87313336-87313355 | MS.gene90874:CDS | 50.0% |
| ! | TGTTGCCAGAGTACCTTTGG+TGG | - | chr1.4:87313339-87313358 | MS.gene90874:CDS | 50.0% |
| ATGGGGTGATCCTAGGAAGG+AGG | - | chr1.4:87315269-87315288 | MS.gene90874:intron | 55.0% | |
| GGAATGGGGTGATCCTAGGA+AGG | - | chr1.4:87315266-87315285 | MS.gene90874:intron | 55.0% | |
| TCCCAGTCGGAAGTAGTGAG+AGG | + | chr1.4:87313397-87313416 | None:intergenic | 55.0% | |
| TCTCACTACTTCCGACTGGG+AGG | - | chr1.4:87313396-87313415 | MS.gene90874:intron | 55.0% | |
| CGGTGAAGGTTAGAGGCCAG+AGG | + | chr1.4:87315362-87315381 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 87313313 | 87316054 | 87313313 | ID=MS.gene90874 |
| chr1.4 | mRNA | 87313313 | 87316054 | 87313313 | ID=MS.gene90874.t1;Parent=MS.gene90874 |
| chr1.4 | exon | 87315950 | 87316054 | 87315950 | ID=MS.gene90874.t1.exon1;Parent=MS.gene90874.t1 |
| chr1.4 | CDS | 87315950 | 87316054 | 87315950 | ID=cds.MS.gene90874.t1;Parent=MS.gene90874.t1 |
| chr1.4 | exon | 87314035 | 87314100 | 87314035 | ID=MS.gene90874.t1.exon2;Parent=MS.gene90874.t1 |
| chr1.4 | CDS | 87314035 | 87314100 | 87314035 | ID=cds.MS.gene90874.t1;Parent=MS.gene90874.t1 |
| chr1.4 | exon | 87313834 | 87313882 | 87313834 | ID=MS.gene90874.t1.exon3;Parent=MS.gene90874.t1 |
| chr1.4 | CDS | 87313834 | 87313882 | 87313834 | ID=cds.MS.gene90874.t1;Parent=MS.gene90874.t1 |
| chr1.4 | exon | 87313551 | 87313674 | 87313551 | ID=MS.gene90874.t1.exon4;Parent=MS.gene90874.t1 |
| chr1.4 | CDS | 87313551 | 87313674 | 87313551 | ID=cds.MS.gene90874.t1;Parent=MS.gene90874.t1 |
| chr1.4 | exon | 87313313 | 87313364 | 87313313 | ID=MS.gene90874.t1.exon5;Parent=MS.gene90874.t1 |
| chr1.4 | CDS | 87313313 | 87313364 | 87313313 | ID=cds.MS.gene90874.t1;Parent=MS.gene90874.t1 |
| Gene Sequence |
| Protein sequence |
