Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90961.t1 | XP_013456507.1 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 7.50E-130 | 473.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90961.t1 | A0A072UNB3 | 96.2 | 286 | 9 | 1 | 1 | 286 | 1 | 284 | 5.4e-130 | 473.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene90961 | 0.804684 | 1.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90961 | MS.gene032192 | PPI |
| MS.gene90961 | MS.gene85263 | PPI |
| MS.gene90961 | MS.gene051997 | PPI |
| MS.gene90961 | MS.gene98743 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90961.t1 | MTR_4g074120 | 97.203 | 286 | 6 | 2 | 1 | 286 | 1 | 284 | 0.0 | 574 |
| MS.gene90961.t1 | MTR_4g074120 | 96.471 | 255 | 7 | 2 | 1 | 255 | 1 | 253 | 0.0 | 509 |
| MS.gene90961.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.18e-125 | 360 |
| MS.gene90961.t1 | MTR_1g035700 | 62.630 | 289 | 100 | 4 | 1 | 286 | 1 | 284 | 1.23e-124 | 359 |
| MS.gene90961.t1 | MTR_1g035700 | 61.149 | 296 | 100 | 5 | 1 | 286 | 1 | 291 | 1.16e-122 | 352 |
| MS.gene90961.t1 | MTR_2g099155 | 44.105 | 229 | 110 | 4 | 72 | 283 | 6 | 233 | 4.18e-58 | 186 |
| MS.gene90961.t1 | MTR_2g099155 | 42.678 | 239 | 109 | 5 | 72 | 283 | 6 | 243 | 1.82e-55 | 180 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90961.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 7.31e-74 | 227 |
| MS.gene90961.t1 | AT1G60670 | 46.094 | 256 | 111 | 6 | 37 | 286 | 1 | 235 | 9.08e-74 | 226 |
| MS.gene90961.t1 | AT1G60670 | 44.922 | 256 | 109 | 6 | 37 | 286 | 1 | 230 | 1.49e-70 | 218 |
| MS.gene90961.t1 | AT1G10820 | 45.850 | 253 | 120 | 6 | 37 | 286 | 1 | 239 | 6.45e-66 | 207 |
| MS.gene90961.t1 | AT1G10820 | 48.444 | 225 | 98 | 4 | 64 | 286 | 5 | 213 | 7.62e-65 | 203 |
| MS.gene90961.t1 | AT3G07565 | 42.922 | 219 | 118 | 2 | 68 | 283 | 37 | 251 | 7.25e-60 | 191 |
| MS.gene90961.t1 | AT3G07565 | 43.379 | 219 | 116 | 3 | 68 | 283 | 37 | 250 | 3.34e-59 | 189 |
| MS.gene90961.t1 | AT1G60670 | 42.358 | 229 | 105 | 6 | 37 | 259 | 1 | 208 | 5.05e-57 | 182 |
| MS.gene90961.t1 | AT3G07565 | 41.228 | 228 | 118 | 3 | 68 | 283 | 37 | 260 | 7.26e-57 | 184 |
| MS.gene90961.t1 | AT1G68160 | 42.446 | 278 | 137 | 3 | 1 | 278 | 3 | 257 | 8.92e-50 | 166 |
| MS.gene90961.t1 | AT1G60670 | 42.157 | 204 | 91 | 6 | 37 | 234 | 1 | 183 | 2.08e-48 | 160 |
| MS.gene90961.t1 | AT3G07565 | 40.945 | 127 | 67 | 3 | 68 | 191 | 37 | 158 | 3.98e-25 | 99.4 |
| MS.gene90961.t1 | AT2G43470 | 32.984 | 191 | 101 | 8 | 95 | 277 | 24 | 195 | 1.42e-15 | 74.3 |
Find 65 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCCAATGGGTAATTATTT+TGG | 0.089118 | 4.2:-34587402 | MS.gene90961:CDS |
| CTTCTTGTTGATTCAGTTCC+AGG | 0.161351 | 4.2:-34587267 | MS.gene90961:CDS |
| TTTGGGTTTAGTAGTTCTTC+TGG | 0.191137 | 4.2:-34587384 | MS.gene90961:CDS |
| TCTTGCAAGATCCTCGTTAA+TGG | 0.242729 | 4.2:+34583716 | None:intergenic |
| CACCTTGTACGTCGATAAAT+TGG | 0.260162 | 4.2:+34584500 | None:intergenic |
| CTGCTCCATGAGTTGCTTCA+TGG | 0.279827 | 4.2:+34584551 | None:intergenic |
| CTTCATGATACTTGGTTCAT+TGG | 0.301764 | 4.2:+34586229 | None:intergenic |
| CAACAGGCAGTGGCGGCATT+TGG | 0.339764 | 4.2:+34583739 | None:intergenic |
| TTTCCCAAACTGTGTTCATC+TGG | 0.342616 | 4.2:+34585406 | None:intergenic |
| TTCTCACATGTCACGCGTTA+TGG | 0.353724 | 4.2:-34584830 | MS.gene90961:CDS |
| GAACTTACCTAAGTTCTATT+AGG | 0.367237 | 4.2:+34583684 | None:intergenic |
| GAAACCAGATGAACACAGTT+TGG | 0.374047 | 4.2:-34585410 | MS.gene90961:CDS |
| TGCTCCATGAGTTGCTTCAT+GGG | 0.376053 | 4.2:+34584552 | None:intergenic |
| TCTTCTGGGATGGTATATTC+TGG | 0.384527 | 4.2:-34587369 | MS.gene90961:CDS |
| TTGGGTTTAGTAGTTCTTCT+GGG | 0.387168 | 4.2:-34587383 | MS.gene90961:CDS |
| CTGTTCGCGATGTTGCTTTG+AGG | 0.408201 | 4.2:-34586172 | MS.gene90961:CDS |
| TTCTTGTTGATTCAGTTCCA+GGG | 0.434162 | 4.2:-34587266 | MS.gene90961:CDS |
| TTGATGTACTTCATGATACT+TGG | 0.436387 | 4.2:+34586221 | None:intergenic |
| AGCACAGTCAAATTTGCATT+CGG | 0.444424 | 4.2:-34584878 | MS.gene90961:CDS |
| AGATCCTCGTTAATGGCAAC+AGG | 0.447502 | 4.2:+34583723 | None:intergenic |
| ACCCAAAATAATTACCCATT+GGG | 0.452792 | 4.2:+34587400 | None:intergenic |
| GAGAATATGACCCCATGCTT+GGG | 0.454600 | 4.2:+34584848 | None:intergenic |
| AAACCAGATGAACACAGTTT+GGG | 0.464720 | 4.2:-34585409 | MS.gene90961:CDS |
| AACCCAAAATAATTACCCAT+TGG | 0.481651 | 4.2:+34587399 | None:intergenic |
| GTTTAGTAGTTCTTCTGGGA+TGG | 0.481723 | 4.2:-34587379 | MS.gene90961:CDS |
| GCGATGTTGCTTTGAGGTGT+AGG | 0.484163 | 4.2:-34586166 | MS.gene90961:CDS |
| GTGTATGTTCAGGAATTTGT+GGG | 0.484238 | 4.2:-34584575 | MS.gene90961:intron |
| GTTGTAAGTCAAGGTGGTGC+TGG | 0.490288 | 4.2:-34587315 | MS.gene90961:CDS |
| TCGTTAATGGCAACAGGCAG+TGG | 0.497673 | 4.2:+34583729 | None:intergenic |
| ATCCACATACTCGTTTAGAA+TGG | 0.498102 | 4.2:+34583863 | None:intergenic |
| GGCATTTGGCTCATAATGCC+AGG | 0.504404 | 4.2:+34583753 | None:intergenic |
| TGAGAATATGACCCCATGCT+TGG | 0.517631 | 4.2:+34584847 | None:intergenic |
| TCTTGATGAACAGTACAGAT+TGG | 0.528915 | 4.2:-34587208 | MS.gene90961:CDS |
| GGTGCTGGTGGTAATTCAGC+TGG | 0.543025 | 4.2:-34587300 | MS.gene90961:CDS |
| CCTGTGTCATGCTTAAGCCC+TGG | 0.552020 | 4.2:+34587249 | None:intergenic |
| ATGTCAGAGATGGTCCCAAT+GGG | 0.554489 | 4.2:-34587414 | MS.gene90961:CDS |
| TGTGTATGTTCAGGAATTTG+TGG | 0.554772 | 4.2:-34584576 | MS.gene90961:intron |
| TGAACAGTACAGATTGGAAG+AGG | 0.560367 | 4.2:-34587202 | MS.gene90961:CDS |
| ACACAGGGTTGGCTGTTGAA+TGG | 0.567227 | 4.2:-34587233 | MS.gene90961:CDS |
| TGGGCCCATGAAGCAACTCA+TGG | 0.567392 | 4.2:-34584556 | MS.gene90961:CDS |
| CATGTCAGAGATGGTCCCAA+TGG | 0.570192 | 4.2:-34587415 | MS.gene90961:CDS |
| CCAGGGCTTAAGCATGACAC+AGG | 0.572689 | 4.2:-34587249 | MS.gene90961:CDS |
| GCTTCTTCAGGATAAGTCGT+TGG | 0.579374 | 4.2:-34584908 | MS.gene90961:intron |
| AACAACCATGTTGTAAGTCA+AGG | 0.581264 | 4.2:-34587324 | MS.gene90961:CDS |
| TGTGCCTTGTGTGGCAAAAG+AGG | 0.582507 | 4.2:+34583895 | None:intergenic |
| GAATAATAGCATGTCAGAGA+TGG | 0.583965 | 4.2:-34587424 | MS.gene90961:CDS |
| TACCAATTTATCGACGTACA+AGG | 0.592537 | 4.2:-34584502 | MS.gene90961:intron |
| CACCACCTTGACTTACAACA+TGG | 0.596965 | 4.2:+34587319 | None:intergenic |
| AGTCAACGGACACTATATGA+TGG | 0.610616 | 4.2:-34584802 | MS.gene90961:intron |
| GCTTAAGCATGACACAGGGT+TGG | 0.613167 | 4.2:-34587244 | MS.gene90961:CDS |
| TGCAGCATGAGTGAGATGCC+TGG | 0.617604 | 4.2:-34583771 | MS.gene90961:intron |
| AATTAATATTGTGCCTTGTG+TGG | 0.630893 | 4.2:+34583886 | None:intergenic |
| ATGTTGCTTTGAGGTGTAGG+TGG | 0.642936 | 4.2:-34586163 | MS.gene90961:CDS |
| AGAATATGACCCCATGCTTG+GGG | 0.646474 | 4.2:+34584849 | None:intergenic |
| TTAATGGCAACAGGCAGTGG+CGG | 0.648108 | 4.2:+34583732 | None:intergenic |
| TGGAGGCAGAGTCAAACAGA+GGG | 0.653189 | 4.2:-34587512 | MS.gene90961:CDS |
| GTAAGTCAAGGTGGTGCTGG+TGG | 0.656921 | 4.2:-34587312 | MS.gene90961:CDS |
| ATGGAGGCAGAGTCAAACAG+AGG | 0.667685 | 4.2:-34587513 | MS.gene90961:CDS |
| GAATATGACCCCATGCTTGG+GGG | 0.678829 | 4.2:+34584850 | None:intergenic |
| GAACAGTACAGATTGGAAGA+GGG | 0.679393 | 4.2:-34587201 | MS.gene90961:CDS |
| CAGGGCTTAAGCATGACACA+GGG | 0.681848 | 4.2:-34587248 | MS.gene90961:CDS |
| AACCATGTTGTAAGTCAAGG+TGG | 0.691347 | 4.2:-34587321 | MS.gene90961:CDS |
| GCGTTATGGAACAAAGTCAA+CGG | 0.697757 | 4.2:-34584816 | MS.gene90961:CDS |
| ACTGCCTGTTGCCATTAACG+AGG | 0.709980 | 4.2:-34583727 | MS.gene90961:CDS |
| CATGCAATATCATTTCAGCA+CGG | 0.730065 | 4.2:-34587453 | MS.gene90961:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATATATTTAATTTTTTA+TGG | + | chr4.2:34585983-34586002 | None:intergenic | 0.0% |
| !! | AATATGATCATTAATTTAAA+TGG | + | chr4.2:34587002-34587021 | None:intergenic | 10.0% |
| !! | ATTAAAAAAACTTAAGAAAA+TGG | + | chr4.2:34586438-34586457 | None:intergenic | 10.0% |
| !! | TTATTTATTTATTGCTAATT+TGG | - | chr4.2:34584064-34584083 | MS.gene90961:intron | 10.0% |
| !!! | ATAAATTTCCAATTTTAAAT+GGG | + | chr4.2:34585643-34585662 | None:intergenic | 10.0% |
| !! | ATAACAATCATGAAATTAAA+AGG | + | chr4.2:34584938-34584957 | None:intergenic | 15.0% |
| !! | CTTTAATATGTTATAAGTTA+TGG | - | chr4.2:34585374-34585393 | MS.gene90961:intron | 15.0% |
| !! | TATAATGAAAGATGAAAATT+TGG | + | chr4.2:34587085-34587104 | None:intergenic | 15.0% |
| !! | TTAAAATTGGAAATTTATCA+GGG | - | chr4.2:34585645-34585664 | MS.gene90961:intron | 15.0% |
| !!! | GATAAATTTCCAATTTTAAA+TGG | + | chr4.2:34585644-34585663 | None:intergenic | 15.0% |
| !!! | TAAATTTCCAATTTTAAATG+GGG | + | chr4.2:34585642-34585661 | None:intergenic | 15.0% |
| !!! | TAAGTTGAACAATAAATTTA+AGG | - | chr4.2:34584296-34584315 | MS.gene90961:intron | 15.0% |
| !!! | TTATTTTCTTAGTTTATGTT+TGG | + | chr4.2:34584455-34584474 | None:intergenic | 15.0% |
| !!! | TTTAAAATTGGAAATTTATC+AGG | - | chr4.2:34585644-34585663 | MS.gene90961:intron | 15.0% |
| !! | AGACACACTTAAATTATTAT+CGG | + | chr4.2:34584140-34584159 | None:intergenic | 20.0% |
| !! | AGATTCTATAAAATAGATTC+TGG | - | chr4.2:34584219-34584238 | MS.gene90961:intron | 20.0% |
| !! | ATAAAAACAAATGACTTACT+TGG | + | chr4.2:34584035-34584054 | None:intergenic | 20.0% |
| !! | ATAATTGCAACATATTAAAG+TGG | + | chr4.2:34585267-34585286 | None:intergenic | 20.0% |
| !! | ATGAAACATAACCTTTAAAT+AGG | + | chr4.2:34585560-34585579 | None:intergenic | 20.0% |
| !! | ATTTGTAACAACTAATTTAG+TGG | - | chr4.2:34586822-34586841 | MS.gene90961:intron | 20.0% |
| !! | CTTGTATTCAATAATTTGAT+TGG | - | chr4.2:34584782-34584801 | MS.gene90961:intron | 20.0% |
| !! | TAATGAAGTTTACTTGTATT+TGG | - | chr4.2:34587368-34587387 | MS.gene90961:CDS | 20.0% |
| !! | TATTTAATGAAATGTGGAAT+TGG | + | chr4.2:34586607-34586626 | None:intergenic | 20.0% |
| !! | TTCAACTTACATTTATATGA+AGG | + | chr4.2:34584285-34584304 | None:intergenic | 20.0% |
| !! | TTGAATCAATTAATGTCTTT+AGG | - | chr4.2:34586236-34586255 | MS.gene90961:CDS | 20.0% |
| !! | TTGATTCAATATATCAAAAC+TGG | + | chr4.2:34586225-34586244 | None:intergenic | 20.0% |
| !!! | AAATTTCCAATTTTAAATGG+GGG | + | chr4.2:34585641-34585660 | None:intergenic | 20.0% |
| !!! | AAGAACCTAAATTATTTTCA+TGG | + | chr4.2:34584594-34584613 | None:intergenic | 20.0% |
| !!! | AGAACCTAAATTATTTTCAT+GGG | + | chr4.2:34584593-34584612 | None:intergenic | 20.0% |
| !!! | AGTTTTGTTTTTGTAAATAC+TGG | - | chr4.2:34586752-34586771 | MS.gene90961:intron | 20.0% |
| !!! | CAGAAAAGTATGTAAAATTT+TGG | - | chr4.2:34585834-34585853 | MS.gene90961:intron | 20.0% |
| !!! | TTTAGAATTCAAATTTGTAC+TGG | + | chr4.2:34585234-34585253 | None:intergenic | 20.0% |
| ! | AACAAAACTGAAACATATGA+TGG | + | chr4.2:34586741-34586760 | None:intergenic | 25.0% |
| ! | AATGAAGAAAATAAAGCTGA+TGG | - | chr4.2:34585470-34585489 | MS.gene90961:intron | 25.0% |
| ! | AATTTGAACATTTCCTAAAC+AGG | + | chr4.2:34586911-34586930 | None:intergenic | 25.0% |
| ! | CAACTTGTAATCCTATTTAA+AGG | - | chr4.2:34585546-34585565 | MS.gene90961:intron | 25.0% |
| ! | CACAAGTATTTAATGAAATG+TGG | + | chr4.2:34586613-34586632 | None:intergenic | 25.0% |
| ! | CTTTCCCATGAAAATAATTT+AGG | - | chr4.2:34584586-34584605 | MS.gene90961:intron | 25.0% |
| ! | GAAAGATATCATATTCACAT+TGG | - | chr4.2:34586944-34586963 | MS.gene90961:intron | 25.0% |
| ! | TATCTAAGTTCTTTCAGTTA+TGG | - | chr4.2:34587188-34587207 | MS.gene90961:intron | 25.0% |
| ! | TATTGTCTGTCTAATTACTA+TGG | - | chr4.2:34587018-34587037 | MS.gene90961:intron | 25.0% |
| ! | TTAAATACTTGTGTATGTTC+AGG | - | chr4.2:34586620-34586639 | MS.gene90961:intron | 25.0% |
| ! | TTGTGGATAATATGTTATAC+TGG | + | chr4.2:34585672-34585691 | None:intergenic | 25.0% |
| ! | TTTCATAGATCTTAAAACTG+AGG | + | chr4.2:34586007-34586026 | None:intergenic | 25.0% |
| !! | AATTTTAAATGGGGGAAAAA+AGG | + | chr4.2:34585633-34585652 | None:intergenic | 25.0% |
| !! | AGGCTAAAATTCAATTTTAG+CGG | - | chr4.2:34584316-34584335 | MS.gene90961:intron | 25.0% |
| !!! | ATGCTTTAGAAACTATAAAG+TGG | + | chr4.2:34585323-34585342 | None:intergenic | 25.0% |
| !!! | TATGAAGTATTGCATTGAAA+TGG | - | chr4.2:34587106-34587125 | MS.gene90961:intron | 25.0% |
| !!! | TGTGCTAAATTTGTTTTTCA+TGG | - | chr4.2:34584853-34584872 | MS.gene90961:CDS | 25.0% |
| !!! | TTTTTTCCCCCATTTAAAAT+TGG | - | chr4.2:34585632-34585651 | MS.gene90961:intron | 25.0% |
| AAAACTGGAATCCCATTTAT+GGG | + | chr4.2:34586210-34586229 | None:intergenic | 30.0% | |
| AACCAACTTAAAACATTAGG+AGG | + | chr4.2:34585941-34585960 | None:intergenic | 30.0% | |
| AACCCAAAATAATTACCCAT+TGG | + | chr4.2:34583809-34583828 | None:intergenic | 30.0% | |
| AACCTAGTTAACTACTGATA+TGG | + | chr4.2:34587136-34587155 | None:intergenic | 30.0% | |
| AATTAATATTGTGCCTTGTG+TGG | + | chr4.2:34587322-34587341 | None:intergenic | 30.0% | |
| ACCCAAAATAATTACCCATT+GGG | + | chr4.2:34583808-34583827 | None:intergenic | 30.0% | |
| ACCTAGTTAACTACTGATAT+GGG | + | chr4.2:34587135-34587154 | None:intergenic | 30.0% | |
| AGATGTTCCAAGTTTGTAAA+AGG | + | chr4.2:34586797-34586816 | None:intergenic | 30.0% | |
| AGCATTAAACTATGTACATC+GGG | + | chr4.2:34585101-34585120 | None:intergenic | 30.0% | |
| ATAAGTTATGGTGATATCAG+TGG | - | chr4.2:34585386-34585405 | MS.gene90961:intron | 30.0% | |
| CAAAGAAAACAATACTTGGT+AGG | + | chr4.2:34584762-34584781 | None:intergenic | 30.0% | |
| CAAGCAAAGAAAACAATACT+TGG | + | chr4.2:34584766-34584785 | None:intergenic | 30.0% | |
| CAGAACCAACTTAAAACATT+AGG | + | chr4.2:34585944-34585963 | None:intergenic | 30.0% | |
| CAGCATTAAACTATGTACAT+CGG | + | chr4.2:34585102-34585121 | None:intergenic | 30.0% | |
| CTCTGCAAAAATGGTTTAAA+CGG | + | chr4.2:34585766-34585785 | None:intergenic | 30.0% | |
| GCATATTCAAGTGACTTTAA+TGG | + | chr4.2:34585158-34585177 | None:intergenic | 30.0% | |
| TAAAACATTAGGAGGAGAAT+CGG | + | chr4.2:34585933-34585952 | None:intergenic | 30.0% | |
| TGAAAGTTGAATATGCATAG+TGG | - | chr4.2:34585192-34585211 | MS.gene90961:intron | 30.0% | |
| TGCAAATTGAATATGCATAG+TGG | - | chr4.2:34585292-34585311 | MS.gene90961:intron | 30.0% | |
| TGGCTAAGTATAAATACATG+CGG | - | chr4.2:34586842-34586861 | MS.gene90961:intron | 30.0% | |
| TTATGTTGCATCCCATAAAT+GGG | - | chr4.2:34586196-34586215 | MS.gene90961:CDS | 30.0% | |
| TTGATGTACTTCATGATACT+TGG | + | chr4.2:34584987-34585006 | None:intergenic | 30.0% | |
| ! | AATTTTACCTCCTTAGAAAG+TGG | - | chr4.2:34584427-34584446 | MS.gene90961:intron | 30.0% |
| ! | ATTTAGGTTCTTTGAATCTG+TGG | - | chr4.2:34584602-34584621 | MS.gene90961:intron | 30.0% |
| ! | GATTGATTCTTATCCTGTTT+AGG | - | chr4.2:34586895-34586914 | MS.gene90961:intron | 30.0% |
| ! | TCCCAATGGGTAATTATTTT+GGG | - | chr4.2:34583804-34583823 | MS.gene90961:intron | 30.0% |
| ! | TCTAATTTGAAGCTAGTGTT+TGG | + | chr4.2:34584350-34584369 | None:intergenic | 30.0% |
| ! | TTTTCGTCCTTTTACAAACT+TGG | - | chr4.2:34586787-34586806 | MS.gene90961:intron | 30.0% |
| !! | GTGCACAATTTTCATTTTTG+TGG | + | chr4.2:34585689-34585708 | None:intergenic | 30.0% |
| !! | TGGTAGGTAGTATTTTTAAG+TGG | + | chr4.2:34584746-34584765 | None:intergenic | 30.0% |
| !! | TTCACTTCTACACTTGTTTT+CGG | - | chr4.2:34585728-34585747 | MS.gene90961:intron | 30.0% |
| !!! | GGTAGGTAGTATTTTTAAGT+GGG | + | chr4.2:34584745-34584764 | None:intergenic | 30.0% |
| AAACCAGATGAACACAGTTT+GGG | - | chr4.2:34585796-34585815 | MS.gene90961:intron | 35.0% | |
| AACAACCATGTTGTAAGTCA+AGG | - | chr4.2:34583881-34583900 | MS.gene90961:CDS | 35.0% | |
| AAGCTGATGGAACTTTCAAT+TGG | - | chr4.2:34585483-34585502 | MS.gene90961:intron | 35.0% | |
| AATTTGTACTGGACTCAAAG+TGG | + | chr4.2:34585223-34585242 | None:intergenic | 35.0% | |
| ACAGAAAATAAGTTGCCATG+TGG | + | chr4.2:34584563-34584582 | None:intergenic | 35.0% | |
| ACATCGGGAAAATTGTTGAA+AGG | + | chr4.2:34585086-34585105 | None:intergenic | 35.0% | |
| AGCACAGTCAAATTTGCATT+CGG | - | chr4.2:34586327-34586346 | MS.gene90961:intron | 35.0% | |
| AGCTGATGGAACTTTCAATT+GGG | - | chr4.2:34585484-34585503 | MS.gene90961:intron | 35.0% | |
| ATCCACATACTCGTTTAGAA+TGG | + | chr4.2:34587345-34587364 | None:intergenic | 35.0% | |
| ATCCACTAGACAATCTATAG+AGG | + | chr4.2:34586875-34586894 | None:intergenic | 35.0% | |
| ATGGTGATATCAGTGGTTAA+AGG | - | chr4.2:34585393-34585412 | MS.gene90961:CDS | 35.0% | |
| CAAAACTGGAATCCCATTTA+TGG | + | chr4.2:34586211-34586230 | None:intergenic | 35.0% | |
| CATGCAATATCATTTCAGCA+CGG | - | chr4.2:34583752-34583771 | MS.gene90961:CDS | 35.0% | |
| CTTATGTTGCATCCCATAAA+TGG | - | chr4.2:34586195-34586214 | MS.gene90961:CDS | 35.0% | |
| CTTCATGATACTTGGTTCAT+TGG | + | chr4.2:34584979-34584998 | None:intergenic | 35.0% | |
| GAATAATAGCATGTCAGAGA+TGG | - | chr4.2:34583781-34583800 | MS.gene90961:intron | 35.0% | |
| GAATTGATTGCAAAACAAGG+TGG | + | chr4.2:34584723-34584742 | None:intergenic | 35.0% | |
| GTGTATGTTCAGGAATTTGT+GGG | - | chr4.2:34586630-34586649 | MS.gene90961:intron | 35.0% | |
| TACCAATTTATCGACGTACA+AGG | - | chr4.2:34586703-34586722 | MS.gene90961:intron | 35.0% | |
| TAGTCCACAGATAAAAAGAC+AGG | + | chr4.2:34584677-34584696 | None:intergenic | 35.0% | |
| TATGCTTGACTATCTTGTCA+AGG | - | chr4.2:34586131-34586150 | MS.gene90961:intron | 35.0% | |
| TCAAGCTCTCATTATGTTTG+CGG | - | chr4.2:34586465-34586484 | MS.gene90961:intron | 35.0% | |
| TCCCATATCAGTAGTTAACT+AGG | - | chr4.2:34587131-34587150 | MS.gene90961:intron | 35.0% | |
| TCTTGATGAACAGTACAGAT+TGG | - | chr4.2:34583997-34584016 | MS.gene90961:intron | 35.0% | |
| TGGGAATTGATTGCAAAACA+AGG | + | chr4.2:34584726-34584745 | None:intergenic | 35.0% | |
| TGTGTATGTTCAGGAATTTG+TGG | - | chr4.2:34586629-34586648 | MS.gene90961:intron | 35.0% | |
| TGTTTGCGGCTACATTATTT+CGG | - | chr4.2:34586479-34586498 | MS.gene90961:intron | 35.0% | |
| TTAGGTTTCGGTTGTTATCA+CGG | - | chr4.2:34585423-34585442 | MS.gene90961:CDS | 35.0% | |
| TTATCACATTACTGGACTCA+TGG | - | chr4.2:34586967-34586986 | MS.gene90961:intron | 35.0% | |
| TTCCATTCTAAACGAGTATG+TGG | - | chr4.2:34587340-34587359 | MS.gene90961:CDS | 35.0% | |
| TTGGGTTTAGTAGTTCTTCT+GGG | - | chr4.2:34583822-34583841 | MS.gene90961:intron | 35.0% | |
| ! | ATGTTTGGTTCCACTTTCTA+AGG | + | chr4.2:34584440-34584459 | None:intergenic | 35.0% |
| ! | CACATTGGTTATCACATTAC+TGG | - | chr4.2:34586959-34586978 | MS.gene90961:intron | 35.0% |
| ! | CTTTCAATTGGGCTAGAATA+TGG | - | chr4.2:34585495-34585514 | MS.gene90961:intron | 35.0% |
| ! | GGAGGTAAAATTGATTTCAG+AGG | + | chr4.2:34584419-34584438 | None:intergenic | 35.0% |
| ! | GTCCCAATGGGTAATTATTT+TGG | - | chr4.2:34583803-34583822 | MS.gene90961:intron | 35.0% |
| ! | TTTGGGTTTAGTAGTTCTTC+TGG | - | chr4.2:34583821-34583840 | MS.gene90961:intron | 35.0% |
| !! | CTCCTCCTAATGTTTTAAGT+TGG | - | chr4.2:34585936-34585955 | MS.gene90961:intron | 35.0% |
| !! | CTTCATTTTTCTGCAATTGC+TGG | + | chr4.2:34585457-34585476 | None:intergenic | 35.0% |
| !! | TTCTAAAGTCATGCTTCTTC+AGG | - | chr4.2:34586285-34586304 | MS.gene90961:intron | 35.0% |
| !! | TTCTTGTTGATTCAGTTCCA+GGG | - | chr4.2:34583939-34583958 | MS.gene90961:intron | 35.0% |
| !!! | AAAGGCAAGGTTTTAGGTTT+CGG | - | chr4.2:34585411-34585430 | MS.gene90961:CDS | 35.0% |
| AAAGGCAAGGAAGGTTATCT+TGG | + | chr4.2:34585615-34585634 | None:intergenic | 40.0% | |
| AACCATGTTGTAAGTCAAGG+TGG | - | chr4.2:34583884-34583903 | MS.gene90961:CDS | 40.0% | |
| AGGGTTTACATTTGTCCACA+TGG | - | chr4.2:34584545-34584564 | MS.gene90961:CDS | 40.0% | |
| AGTCAACGGACACTATATGA+TGG | - | chr4.2:34586403-34586422 | MS.gene90961:intron | 40.0% | |
| CACCTCTATAGATTGTCTAG+TGG | - | chr4.2:34586870-34586889 | MS.gene90961:intron | 40.0% | |
| CACCTTGTACGTCGATAAAT+TGG | + | chr4.2:34586708-34586727 | None:intergenic | 40.0% | |
| CCACAGATAAAAAGACAGGT+TGG | + | chr4.2:34584673-34584692 | None:intergenic | 40.0% | |
| CTTCGCTTTCTCTGCAAAAA+TGG | + | chr4.2:34585775-34585794 | None:intergenic | 40.0% | |
| GAAACCAGATGAACACAGTT+TGG | - | chr4.2:34585795-34585814 | MS.gene90961:intron | 40.0% | |
| GAACAGTACAGATTGGAAGA+GGG | - | chr4.2:34584004-34584023 | MS.gene90961:intron | 40.0% | |
| GATATCAGTGGTTAAAGGCA+AGG | - | chr4.2:34585398-34585417 | MS.gene90961:CDS | 40.0% | |
| GCGTTATGGAACAAAGTCAA+CGG | - | chr4.2:34586389-34586408 | MS.gene90961:intron | 40.0% | |
| GTTCTTTGATGAACAGTTGC+AGG | - | chr4.2:34587277-34587296 | MS.gene90961:CDS | 40.0% | |
| TAAATGGGGGAAAAAAGGCA+AGG | + | chr4.2:34585628-34585647 | None:intergenic | 40.0% | |
| TCTTGCAAGATCCTCGTTAA+TGG | + | chr4.2:34587492-34587511 | None:intergenic | 40.0% | |
| TGAACAGTACAGATTGGAAG+AGG | - | chr4.2:34584003-34584022 | MS.gene90961:intron | 40.0% | |
| TTACAAGTTGTGATCTGCAG+CGG | + | chr4.2:34585536-34585555 | None:intergenic | 40.0% | |
| TTTCCCAAACTGTGTTCATC+TGG | + | chr4.2:34585802-34585821 | None:intergenic | 40.0% | |
| ! | ATTGAAGGCGTGTTTGATGT+TGG | + | chr4.2:34584507-34584526 | None:intergenic | 40.0% |
| ! | ATTGGGCTAGAATATGGTTG+TGG | - | chr4.2:34585501-34585520 | MS.gene90961:intron | 40.0% |
| ! | CATTTTTGCAGAGAAAGCGA+AGG | - | chr4.2:34585773-34585792 | MS.gene90961:intron | 40.0% |
| ! | CCAACCTGTCTTTTTATCTG+TGG | - | chr4.2:34584670-34584689 | MS.gene90961:intron | 40.0% |
| ! | GTGGTTAAAGGCAAGGTTTT+AGG | - | chr4.2:34585405-34585424 | MS.gene90961:CDS | 40.0% |
| ! | GTGTTTGTTGAAGAGTTGTC+TGG | - | chr4.2:34585891-34585910 | MS.gene90961:intron | 40.0% |
| ! | GTTTAGTAGTTCTTCTGGGA+TGG | - | chr4.2:34583826-34583845 | MS.gene90961:intron | 40.0% |
| ! | TTTGGTTCCACTTTCTAAGG+AGG | + | chr4.2:34584437-34584456 | None:intergenic | 40.0% |
| !! | ACATCGCGAACAGTTTTATC+AGG | + | chr4.2:34585026-34585045 | None:intergenic | 40.0% |
| !! | CTTCTTGTTGATTCAGTTCC+AGG | - | chr4.2:34583938-34583957 | MS.gene90961:intron | 40.0% |
| !! | GAAGCATGACTTTAGAACAC+TGG | + | chr4.2:34586282-34586301 | None:intergenic | 40.0% |
| !! | TCTTCTGGGATGGTATATTC+TGG | - | chr4.2:34583836-34583855 | MS.gene90961:intron | 40.0% |
| !!! | AAGTGCGTCGTTTTTGTAAG+TGG | - | chr4.2:34586579-34586598 | MS.gene90961:intron | 40.0% |
| AGAATATGACCCCATGCTTG+GGG | + | chr4.2:34586359-34586378 | None:intergenic | 45.0% | |
| AGATCCTCGTTAATGGCAAC+AGG | + | chr4.2:34587485-34587504 | None:intergenic | 45.0% | |
| ATGTCAGAGATGGTCCCAAT+GGG | - | chr4.2:34583791-34583810 | MS.gene90961:intron | 45.0% | |
| CACCACCTTGACTTACAACA+TGG | + | chr4.2:34583889-34583908 | None:intergenic | 45.0% | |
| GAGAATATGACCCCATGCTT+GGG | + | chr4.2:34586360-34586379 | None:intergenic | 45.0% | |
| GCACCAACACTTCTGATTGA+AGG | + | chr4.2:34584522-34584541 | None:intergenic | 45.0% | |
| GCTTCTTCAGGATAAGTCGT+TGG | - | chr4.2:34586297-34586316 | MS.gene90961:intron | 45.0% | |
| TGAGAATATGACCCCATGCT+TGG | + | chr4.2:34586361-34586380 | None:intergenic | 45.0% | |
| TGATGTTGGCACAACACATG+TGG | + | chr4.2:34584493-34584512 | None:intergenic | 45.0% | |
| TGCTCCATGAGTTGCTTCAT+GGG | + | chr4.2:34586656-34586675 | None:intergenic | 45.0% | |
| TTCTCACATGTCACGCGTTA+TGG | - | chr4.2:34586375-34586394 | MS.gene90961:intron | 45.0% | |
| ! | ACGCCTTCAATCAGAAGTGT+TGG | - | chr4.2:34584516-34584535 | MS.gene90961:CDS | 45.0% |
| !! | ATCAGAAGTGTTGGTGCTAC+AGG | - | chr4.2:34584525-34584544 | MS.gene90961:CDS | 45.0% |
| !! | ATGTTGCTTTGAGGTGTAGG+TGG | - | chr4.2:34585042-34585061 | MS.gene90961:intron | 45.0% |
| !! | TCAGAAGTGTTGGTGCTACA+GGG | - | chr4.2:34584526-34584545 | MS.gene90961:CDS | 45.0% |
| ACTGCCTGTTGCCATTAACG+AGG | - | chr4.2:34587478-34587497 | MS.gene90961:CDS | 50.0% | |
| ATGGAGGCAGAGTCAAACAG+AGG | - | chr4.2:34583692-34583711 | MS.gene90961:CDS | 50.0% | |
| CAGGGCTTAAGCATGACACA+GGG | - | chr4.2:34583957-34583976 | MS.gene90961:intron | 50.0% | |
| CATGTCAGAGATGGTCCCAA+TGG | - | chr4.2:34583790-34583809 | MS.gene90961:intron | 50.0% | |
| CGTTCGTCTCAGCACTTCAT+AGG | + | chr4.2:34584103-34584122 | None:intergenic | 50.0% | |
| CTGCTCCATGAGTTGCTTCA+TGG | + | chr4.2:34586657-34586676 | None:intergenic | 50.0% | |
| GAATATGACCCCATGCTTGG+GGG | + | chr4.2:34586358-34586377 | None:intergenic | 50.0% | |
| GCTTAAGCATGACACAGGGT+TGG | - | chr4.2:34583961-34583980 | MS.gene90961:intron | 50.0% | |
| GTCTGTCTGCAAGTCTGATC+AGG | - | chr4.2:34584637-34584656 | MS.gene90961:intron | 50.0% | |
| GTTGTAAGTCAAGGTGGTGC+TGG | - | chr4.2:34583890-34583909 | MS.gene90961:CDS | 50.0% | |
| TCGTTAATGGCAACAGGCAG+TGG | + | chr4.2:34587479-34587498 | None:intergenic | 50.0% | |
| TGGAGGCAGAGTCAAACAGA+GGG | - | chr4.2:34583693-34583712 | MS.gene90961:CDS | 50.0% | |
| TGGATTCATGCACACAGCAC+AGG | + | chr4.2:34585138-34585157 | None:intergenic | 50.0% | |
| TGGGGGAAAAAAGGCAAGGA+AGG | + | chr4.2:34585624-34585643 | None:intergenic | 50.0% | |
| TGTGCCTTGTGTGGCAAAAG+AGG | + | chr4.2:34587313-34587332 | None:intergenic | 50.0% | |
| TTAATGGCAACAGGCAGTGG+CGG | + | chr4.2:34587476-34587495 | None:intergenic | 50.0% | |
| ! | GGCATTTGGCTCATAATGCC+AGG | + | chr4.2:34587455-34587474 | None:intergenic | 50.0% |
| ! | TCGACCTCTTTTGCCACACA+AGG | - | chr4.2:34587306-34587325 | MS.gene90961:CDS | 50.0% |
| !! | ACACAGGGTTGGCTGTTGAA+TGG | - | chr4.2:34583972-34583991 | MS.gene90961:intron | 50.0% |
| !! | CTGTTCGCGATGTTGCTTTG+AGG | - | chr4.2:34585033-34585052 | MS.gene90961:intron | 50.0% |
| !! | GCGATGTTGCTTTGAGGTGT+AGG | - | chr4.2:34585039-34585058 | MS.gene90961:intron | 50.0% |
| CCAGGGCTTAAGCATGACAC+AGG | - | chr4.2:34583956-34583975 | MS.gene90961:intron | 55.0% | |
| CCTGTGTCATGCTTAAGCCC+TGG | + | chr4.2:34583959-34583978 | None:intergenic | 55.0% | |
| TGCAGCATGAGTGAGATGCC+TGG | - | chr4.2:34587434-34587453 | MS.gene90961:CDS | 55.0% | |
| TGGGCCCATGAAGCAACTCA+TGG | - | chr4.2:34586649-34586668 | MS.gene90961:intron | 55.0% | |
| ! | GTAAGTCAAGGTGGTGCTGG+TGG | - | chr4.2:34583893-34583912 | MS.gene90961:CDS | 55.0% |
| !! | GGTGCTGGTGGTAATTCAGC+TGG | - | chr4.2:34583905-34583924 | MS.gene90961:CDS | 55.0% |
| CAACAGGCAGTGGCGGCATT+TGG | + | chr4.2:34587469-34587488 | None:intergenic | 60.0% | |
| TCGGCGCTACCCCCAAGCAT+GGG | - | chr4.2:34586346-34586365 | MS.gene90961:intron | 65.0% | |
| TTCGGCGCTACCCCCAAGCA+TGG | - | chr4.2:34586345-34586364 | MS.gene90961:intron | 65.0% | |
| CGGCGCTACCCCCAAGCATG+GGG | - | chr4.2:34586347-34586366 | MS.gene90961:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 34583692 | 34587535 | 34583692 | ID=MS.gene90961 |
| chr4.2 | mRNA | 34583692 | 34587535 | 34583692 | ID=MS.gene90961.t1;Parent=MS.gene90961 |
| chr4.2 | exon | 34587192 | 34587535 | 34587192 | ID=MS.gene90961.t1.exon1;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34587192 | 34587535 | 34587192 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34586157 | 34586256 | 34586157 | ID=MS.gene90961.t1.exon2;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34586157 | 34586256 | 34586157 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34585387 | 34585443 | 34585387 | ID=MS.gene90961.t1.exon3;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34585387 | 34585443 | 34585387 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34584803 | 34584920 | 34584803 | ID=MS.gene90961.t1.exon4;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34584803 | 34584920 | 34584803 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34584503 | 34584585 | 34584503 | ID=MS.gene90961.t1.exon5;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34584503 | 34584585 | 34584503 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34583873 | 34583934 | 34583873 | ID=MS.gene90961.t1.exon6;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34583873 | 34583934 | 34583873 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| chr4.2 | exon | 34583692 | 34583788 | 34583692 | ID=MS.gene90961.t1.exon7;Parent=MS.gene90961.t1 |
| chr4.2 | CDS | 34583692 | 34583788 | 34583692 | ID=cds.MS.gene90961.t1;Parent=MS.gene90961.t1 |
| Gene Sequence |
| Protein sequence |
