Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91171.t1 | XP_003621014.1 | 96.7 | 394 | 13 | 0 | 1 | 394 | 1 | 394 | 1.50E-218 | 768.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91171.t1 | Q944L7 | 62.0 | 395 | 138 | 7 | 5 | 394 | 4 | 391 | 1.4e-135 | 484.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91171.t1 | G7KWQ2 | 96.7 | 394 | 13 | 0 | 1 | 394 | 1 | 394 | 1.1e-218 | 768.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene91171 | 0.821209 | 4.56E-53 | -1.69E-46 |
| MS.gene050571 | MS.gene91171 | 0.80392 | 2.77E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene91171 | 0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene91171 | 0.863117 | 3.13E-64 | -1.69E-46 |
| MS.gene054893 | MS.gene91171 | 0.861916 | 7.33E-64 | -1.69E-46 |
| MS.gene060413 | MS.gene91171 | 0.813962 | 1.96E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91171.t1 | MTR_7g006040 | 98.223 | 394 | 7 | 0 | 1 | 394 | 1 | 394 | 0.0 | 796 |
| MS.gene91171.t1 | MTR_8g064720 | 67.708 | 384 | 113 | 6 | 7 | 385 | 26 | 403 | 9.84e-177 | 498 |
| MS.gene91171.t1 | MTR_5g072900 | 38.806 | 335 | 170 | 10 | 48 | 355 | 60 | 386 | 6.13e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91171.t1 | AT1G18480 | 62.785 | 395 | 135 | 7 | 5 | 394 | 4 | 391 | 2.25e-172 | 486 |
| MS.gene91171.t1 | AT1G07010 | 36.036 | 333 | 184 | 9 | 48 | 356 | 49 | 376 | 2.67e-53 | 182 |
| MS.gene91171.t1 | AT1G07010 | 35.435 | 333 | 182 | 10 | 48 | 356 | 49 | 372 | 1.79e-49 | 172 |
| MS.gene91171.t1 | AT1G07010 | 34.302 | 344 | 186 | 9 | 48 | 356 | 49 | 387 | 2.89e-47 | 166 |
Find 125 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCTAGGGTTGCGGCTTTA+AGG | 0.182522 | 7.4:-93583007 | MS.gene91171:CDS |
| AATCAAAATCCTCTACTTAT+TGG | 0.186269 | 7.4:-93583476 | MS.gene91171:CDS |
| TTGAAAGAACATGTTGATTA+TGG | 0.215908 | 7.4:-93582897 | MS.gene91171:CDS |
| AAGAGAGGAGATTGGGAATT+TGG | 0.242761 | 7.4:+93583755 | None:intergenic |
| TGAGGTTAGTGATTGGTATA+AGG | 0.246230 | 7.4:-93582856 | MS.gene91171:CDS |
| AAGAGTTTCATGATGGGTTT+AGG | 0.248900 | 7.4:-93583028 | MS.gene91171:CDS |
| TGGTGTTAAGAGGATGATTA+TGG | 0.249368 | 7.4:-93582709 | MS.gene91171:CDS |
| GGCGATGCCAAGAGCTTCTT+TGG | 0.255609 | 7.4:+93583585 | None:intergenic |
| ACGTGGCGTTTCGTGGTGTT+AGG | 0.288942 | 7.4:-93583052 | MS.gene91171:CDS |
| TGGTGGTTTGCCTGAGGTTT+TGG | 0.307447 | 7.4:-93582601 | MS.gene91171:CDS |
| TTATTCATCTGATTATATAA+AGG | 0.310568 | 7.4:+93582540 | None:intergenic |
| TAATGGTGTCTGCGAAAATA+AGG | 0.312538 | 7.4:-93582661 | MS.gene91171:CDS |
| TACACAAAATGTTACTGTTT+TGG | 0.322237 | 7.4:-93582955 | MS.gene91171:CDS |
| GAGCTTCTTTGGATTTCTTA+AGG | 0.341904 | 7.4:+93583596 | None:intergenic |
| ATCGCCATCGGTGACCTTCA+TGG | 0.349243 | 7.4:-93583622 | MS.gene91171:CDS |
| TTTATATAATCAGATGAATA+AGG | 0.349298 | 7.4:-93582538 | MS.gene91171:CDS |
| GACAATAAGGCGGCGAAAAC+CGG | 0.357356 | 7.4:+93582820 | None:intergenic |
| GAGGTTAGTGATTGGTATAA+GGG | 0.359259 | 7.4:-93582855 | MS.gene91171:CDS |
| AGGCGAGTGGGGATTGGCGG+TGG | 0.359575 | 7.4:+93583664 | None:intergenic |
| GGGAGGCGAGTGGGGATTGG+CGG | 0.360185 | 7.4:+93583661 | None:intergenic |
| GATTGGTATAAGGGTTTGTT+TGG | 0.360244 | 7.4:-93582846 | MS.gene91171:CDS |
| GGGAAGGTGGAAGAAGGGTT+TGG | 0.362537 | 7.4:-93582501 | MS.gene91171:CDS |
| CGAATGGACCGATTTCAAAA+AGG | 0.363226 | 7.4:-93582983 | MS.gene91171:CDS |
| ATTCAGAAGGAAGGGATTAA+TGG | 0.366442 | 7.4:-93582678 | MS.gene91171:CDS |
| GGTGGTGATGATGGCGGAGG+TGG | 0.369542 | 7.4:+93583682 | None:intergenic |
| AGAGTTTCATGATGGGTTTA+GGG | 0.373309 | 7.4:-93583027 | MS.gene91171:CDS |
| GCATTCCTTCCCCGACAATA+AGG | 0.375199 | 7.4:+93582807 | None:intergenic |
| TTCATGATGGGTTTAGGGCT+AGG | 0.377495 | 7.4:-93583022 | MS.gene91171:CDS |
| GGGGAAGGAATGCACTTGTT+TGG | 0.383176 | 7.4:-93582797 | MS.gene91171:CDS |
| AATTCAAAGTTTGGTTAGAA+TGG | 0.384906 | 7.4:-93583151 | MS.gene91171:CDS |
| TATGGGTTGGAGAAGATTAA+TGG | 0.389368 | 7.4:-93582879 | MS.gene91171:CDS |
| ATGGCGGAGGTGGGAGGAAG+AGG | 0.396791 | 7.4:+93583692 | None:intergenic |
| TGAAAGAACATGTTGATTAT+GGG | 0.411575 | 7.4:-93582896 | MS.gene91171:CDS |
| ATAAGGGTTTGTTTGGTAAC+CGG | 0.411872 | 7.4:-93582839 | MS.gene91171:CDS |
| AAACGCCAAGCTGCGATTCA+TGG | 0.419343 | 7.4:-93583445 | MS.gene91171:CDS |
| GGGATTGGCGGTGGTGATGA+TGG | 0.421506 | 7.4:+93583673 | None:intergenic |
| TCATGATGGGTTTAGGGCTA+GGG | 0.424497 | 7.4:-93583021 | MS.gene91171:CDS |
| CGACGATTCCTGGTGTTAAG+AGG | 0.425093 | 7.4:-93582719 | MS.gene91171:CDS |
| GATCTCGTGGTTACCATTCA+TGG | 0.435438 | 7.4:+93583408 | None:intergenic |
| ATGAATGAAGAGAGGAGATT+GGG | 0.441668 | 7.4:+93583748 | None:intergenic |
| GGTAATTTCATCACCATGAA+TGG | 0.447962 | 7.4:-93583421 | MS.gene91171:CDS |
| CGTGGCGTTTCGTGGTGTTA+GGG | 0.450367 | 7.4:-93583051 | MS.gene91171:CDS |
| CGCCGCCTTATTGTCGGGGA+AGG | 0.455393 | 7.4:-93582812 | MS.gene91171:CDS |
| AATGTTCACGTGGCGTTTCG+TGG | 0.456234 | 7.4:-93583059 | MS.gene91171:CDS |
| GCGATTAAGCGTGACGGAGA+AGG | 0.456235 | 7.4:+93583640 | None:intergenic |
| GAAGGGAGGCGAGTGGGGAT+TGG | 0.457172 | 7.4:+93583658 | None:intergenic |
| TCTGCGAAAATAAGGCGATT+AGG | 0.459167 | 7.4:-93582653 | MS.gene91171:CDS |
| GATGAATGAAGAGAGGAGAT+TGG | 0.459978 | 7.4:+93583747 | None:intergenic |
| GATGTTGGGAAGGTGGAAGA+AGG | 0.466879 | 7.4:-93582507 | MS.gene91171:CDS |
| GTGTTGAAGAATTCAAAGTT+TGG | 0.468250 | 7.4:-93583160 | MS.gene91171:CDS |
| AATAAGGAAAATGTGGATGT+TGG | 0.471510 | 7.4:-93582522 | MS.gene91171:CDS |
| TGGGTTTAGGGCTAGGGTTG+CGG | 0.472943 | 7.4:-93583015 | MS.gene91171:CDS |
| GGTGTTAAGAGGATGATTAT+GGG | 0.476200 | 7.4:-93582708 | MS.gene91171:CDS |
| ATGTAAAGGTTTGGAAGAAA+CGG | 0.488928 | 7.4:-93583099 | MS.gene91171:CDS |
| GTGGTGATGATGGCGGAGGT+GGG | 0.495874 | 7.4:+93583683 | None:intergenic |
| TTTCATCGCCTCCGCGGTCG+AGG | 0.498726 | 7.4:+93583497 | None:intergenic |
| ATTGGCGGTGGTGATGATGG+CGG | 0.499192 | 7.4:+93583676 | None:intergenic |
| GACGGAGAAGGGAGGCGAGT+GGG | 0.499971 | 7.4:+93583652 | None:intergenic |
| AAATGTGGATGTTGGGAAGG+TGG | 0.504316 | 7.4:-93582514 | MS.gene91171:CDS |
| TCAGATGAATAAGGAAAATG+TGG | 0.505988 | 7.4:-93582529 | MS.gene91171:CDS |
| GTTAGGGAAGAGTTTCATGA+TGG | 0.506126 | 7.4:-93583035 | MS.gene91171:CDS |
| AAGAAATCCAAAGAAGCTCT+TGG | 0.507171 | 7.4:-93583592 | MS.gene91171:CDS |
| ATGTTGGGAAGGTGGAAGAA+GGG | 0.512967 | 7.4:-93582506 | MS.gene91171:CDS |
| AGAACCGCCGGTGTAATTAC+CGG | 0.513955 | 7.4:+93583546 | None:intergenic |
| AAAGAAGCTCTTGGCATCGC+CGG | 0.517515 | 7.4:-93583583 | MS.gene91171:CDS |
| CGATTAAGCGTGACGGAGAA+GGG | 0.518870 | 7.4:+93583641 | None:intergenic |
| AGATTGACCGTTATGGGGTG+AGG | 0.524683 | 7.4:-93582578 | MS.gene91171:CDS |
| GCCTTGACTTCCACTTGCCT+AGG | 0.528320 | 7.4:+93582450 | None:intergenic |
| GTGATGATGGCGGAGGTGGG+AGG | 0.530592 | 7.4:+93583686 | None:intergenic |
| ACGGAGAAGGGAGGCGAGTG+GGG | 0.530658 | 7.4:+93583653 | None:intergenic |
| GCAAGTGGAAGTCAAGGCTT+AGG | 0.533119 | 7.4:-93582445 | None:intergenic |
| ATGTCGAAAGGATGCGGTGG+TGG | 0.533822 | 7.4:-93582618 | MS.gene91171:CDS |
| ACCGGAGGAGTCGATTAATC+CGG | 0.536876 | 7.4:+93583564 | None:intergenic |
| CGGTCAATCTCCAAAACCTC+AGG | 0.539656 | 7.4:+93582591 | None:intergenic |
| TTAATGGTGAGGTTAGTGAT+TGG | 0.539710 | 7.4:-93582863 | MS.gene91171:CDS |
| GACATCGCCGACTTGAACGA+CGG | 0.541832 | 7.4:+93583519 | None:intergenic |
| ATAAGGAAAATGTGGATGTT+GGG | 0.548289 | 7.4:-93582521 | MS.gene91171:CDS |
| ACCTAGGCAAGTGGAAGTCA+AGG | 0.549753 | 7.4:-93582451 | MS.gene91171:CDS |
| AACGACGGTGGCAGAACCGC+CGG | 0.553323 | 7.4:+93583534 | None:intergenic |
| ATTTCTTAAGGTCGCCATGA+AGG | 0.558509 | 7.4:+93583608 | None:intergenic |
| TTAGGGAAGAGTTTCATGAT+GGG | 0.558605 | 7.4:-93583034 | MS.gene91171:CDS |
| GGCGGTGGTGATGATGGCGG+AGG | 0.566588 | 7.4:+93583679 | None:intergenic |
| TACCACCATGAATCGCAGCT+TGG | 0.567664 | 7.4:+93583440 | None:intergenic |
| TGACGGAGAAGGGAGGCGAG+TGG | 0.567881 | 7.4:+93583651 | None:intergenic |
| TTGTTGCTTAATAATCAAGA+TGG | 0.574078 | 7.4:-93582477 | MS.gene91171:CDS |
| ATCGATGTTGGTATGTCGAA+AGG | 0.575221 | 7.4:-93582630 | MS.gene91171:CDS |
| GTTGGAGAAGATTAATGGTG+AGG | 0.579243 | 7.4:-93582874 | MS.gene91171:CDS |
| GGGCATACGATTCAGAAGGA+AGG | 0.584494 | 7.4:-93582687 | MS.gene91171:CDS |
| TCAATATCCTCACCCCATAA+CGG | 0.588832 | 7.4:+93582571 | None:intergenic |
| TGGTTAGAATGGTTTCGTCA+AGG | 0.592125 | 7.4:-93583140 | MS.gene91171:CDS |
| GAGGAAGAGGCCGCCGCTGA+CGG | 0.594638 | 7.4:+93583705 | None:intergenic |
| TCTGCCACCGTCGTTCAAGT+CGG | 0.596345 | 7.4:-93583526 | MS.gene91171:CDS |
| CCGTCACGCTTAATCGCCAT+CGG | 0.598482 | 7.4:-93583634 | MS.gene91171:CDS |
| CACGAGATCATGAACGCTGA+AGG | 0.599053 | 7.4:-93583394 | MS.gene91171:intron |
| GGCATACGATTCAGAAGGAA+GGG | 0.601131 | 7.4:-93582686 | MS.gene91171:CDS |
| GTCGACTTCTCCGTCAGCGG+CGG | 0.604792 | 7.4:-93583715 | MS.gene91171:CDS |
| AGAACATGTTGATTATGGGT+TGG | 0.606486 | 7.4:-93582892 | MS.gene91171:CDS |
| GCCGGATTAATCGACTCCTC+CGG | 0.607559 | 7.4:-93583565 | MS.gene91171:CDS |
| AAGGCGATTAGGATCGATGT+TGG | 0.608483 | 7.4:-93582642 | MS.gene91171:CDS |
| GGAAAATGTGGATGTTGGGA+AGG | 0.610345 | 7.4:-93582517 | MS.gene91171:CDS |
| CTTCAGCGTTCATGATCTCG+TGG | 0.614365 | 7.4:+93583395 | None:intergenic |
| ATAATCATCCTCTTAACACC+AGG | 0.619952 | 7.4:+93582711 | None:intergenic |
| GTTGCGGCTTTAAGGCCGAA+TGG | 0.620496 | 7.4:-93582999 | MS.gene91171:CDS |
| TTTGGAGATTGACCGTTATG+GGG | 0.621026 | 7.4:-93582583 | MS.gene91171:CDS |
| GTCGGCGATGTCCTCGACCG+CGG | 0.621064 | 7.4:-93583508 | MS.gene91171:CDS |
| TATGGGGCATACGATTCAGA+AGG | 0.628721 | 7.4:-93582691 | MS.gene91171:CDS |
| ATAATCAAGATGGTAGACCT+AGG | 0.629740 | 7.4:-93582467 | MS.gene91171:CDS |
| GTGTTAAGAGGATGATTATG+GGG | 0.631883 | 7.4:-93582707 | MS.gene91171:CDS |
| GTCGCCATGAAGGTCACCGA+TGG | 0.639408 | 7.4:+93583618 | None:intergenic |
| TTTGTCGACTTCTCCGTCAG+CGG | 0.640574 | 7.4:-93583718 | MS.gene91171:CDS |
| AGATGGTAGACCTAGGCAAG+TGG | 0.641426 | 7.4:-93582460 | MS.gene91171:CDS |
| ATGTGTCGATGAATGAAGAG+AGG | 0.641912 | 7.4:+93583740 | None:intergenic |
| GTTGGTATGTCGAAAGGATG+CGG | 0.642403 | 7.4:-93582624 | MS.gene91171:CDS |
| ATGCGGTGGTGGTTTGCCTG+AGG | 0.644481 | 7.4:-93582607 | MS.gene91171:CDS |
| TTCCTTCCCCGACAATAAGG+CGG | 0.649751 | 7.4:+93582810 | None:intergenic |
| GACTCCTCCGGTAATTACAC+CGG | 0.653662 | 7.4:-93583553 | MS.gene91171:CDS |
| TCCTCCGGTAATTACACCGG+CGG | 0.654305 | 7.4:-93583550 | MS.gene91171:CDS |
| GGCGATGTCCTCGACCGCGG+AGG | 0.659166 | 7.4:-93583505 | MS.gene91171:CDS |
| CGCCAAGCTGCGATTCATGG+TGG | 0.670948 | 7.4:-93583442 | MS.gene91171:CDS |
| TCCGTTAGAAAATGTTCACG+TGG | 0.680750 | 7.4:-93583069 | MS.gene91171:CDS |
| ACCGCCGGTGTAATTACCGG+AGG | 0.685759 | 7.4:+93583549 | None:intergenic |
| CCGATGGCGATTAAGCGTGA+CGG | 0.690691 | 7.4:+93583634 | None:intergenic |
| TTAAGCGTGACGGAGAAGGG+AGG | 0.696214 | 7.4:+93583644 | None:intergenic |
| ATCGCCGACTTGAACGACGG+TGG | 0.711479 | 7.4:+93583522 | None:intergenic |
| GGTATGTCGAAAGGATGCGG+TGG | 0.743976 | 7.4:-93582621 | MS.gene91171:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAAAATCTATGTAA+AGG | - | chr7.4:93583126-93583145 | MS.gene91171:CDS | 15.0% |
| !! | TTATTCATCTGATTATATAA+AGG | + | chr7.4:93583702-93583721 | None:intergenic | 15.0% |
| !! | TTTATATAATCAGATGAATA+AGG | - | chr7.4:93583701-93583720 | MS.gene91171:CDS | 15.0% |
| !!! | ATTTTTTTGTTGTTTACACT+AGG | - | chr7.4:93582870-93582889 | MS.gene91171:CDS | 20.0% |
| !!! | TTAGTATTGAGTAATTTGAT+TGG | + | chr7.4:93582927-93582946 | None:intergenic | 20.0% |
| ! | AATCAAAATCCTCTACTTAT+TGG | - | chr7.4:93582763-93582782 | MS.gene91171:CDS | 25.0% |
| ! | AATTCAAAGTTTGGTTAGAA+TGG | - | chr7.4:93583088-93583107 | MS.gene91171:CDS | 25.0% |
| ! | GAAAAATCTATGTAAAGGTT+TGG | - | chr7.4:93583131-93583150 | MS.gene91171:CDS | 25.0% |
| !! | TACACAAAATGTTACTGTTT+TGG | - | chr7.4:93583284-93583303 | MS.gene91171:intron | 25.0% |
| !! | TGAAAGAACATGTTGATTAT+GGG | - | chr7.4:93583343-93583362 | MS.gene91171:intron | 25.0% |
| !! | TTGAAAGAACATGTTGATTA+TGG | - | chr7.4:93583342-93583361 | MS.gene91171:intron | 25.0% |
| !! | TTGTTGCTTAATAATCAAGA+TGG | - | chr7.4:93583762-93583781 | MS.gene91171:CDS | 25.0% |
| !!! | GTAAAGAACCTTTTTGAAAT+CGG | + | chr7.4:93583267-93583286 | None:intergenic | 25.0% |
| AATAAGGAAAATGTGGATGT+TGG | - | chr7.4:93583717-93583736 | MS.gene91171:CDS | 30.0% | |
| ATAAGGAAAATGTGGATGTT+GGG | - | chr7.4:93583718-93583737 | MS.gene91171:CDS | 30.0% | |
| ATCATGCTTTGATTGGATAT+AGG | - | chr7.4:93582970-93582989 | MS.gene91171:CDS | 30.0% | |
| ATGTAAAGGTTTGGAAGAAA+CGG | - | chr7.4:93583140-93583159 | MS.gene91171:CDS | 30.0% | |
| CAAATACATCATGCTTTGAT+TGG | - | chr7.4:93582963-93582982 | MS.gene91171:CDS | 30.0% | |
| GTGTTGAAGAATTCAAAGTT+TGG | - | chr7.4:93583079-93583098 | MS.gene91171:CDS | 30.0% | |
| TCAGATGAATAAGGAAAATG+TGG | - | chr7.4:93583710-93583729 | MS.gene91171:CDS | 30.0% | |
| ! | ACTATTCTTTTCTCTGTTGA+AGG | - | chr7.4:93583030-93583049 | MS.gene91171:CDS | 30.0% |
| ! | GATTCAATTTTTGTTCATGG+TGG | - | chr7.4:93583315-93583334 | MS.gene91171:intron | 30.0% |
| ! | GGCTTAGAAAATTTTCAGAT+GGG | - | chr7.4:93583463-93583482 | MS.gene91171:CDS | 30.0% |
| ! | GGTGATTCAATTTTTGTTCA+TGG | - | chr7.4:93583312-93583331 | MS.gene91171:intron | 30.0% |
| ! | TGGCTTAGAAAATTTTCAGA+TGG | - | chr7.4:93583462-93583481 | MS.gene91171:CDS | 30.0% |
| !!! | AATGTTACTGTTTTGGTAGT+TGG | - | chr7.4:93583291-93583310 | MS.gene91171:intron | 30.0% |
| AAGAAATCCAAAGAAGCTCT+TGG | - | chr7.4:93582647-93582666 | MS.gene91171:CDS | 35.0% | |
| ATAATCAAGATGGTAGACCT+AGG | - | chr7.4:93583772-93583791 | MS.gene91171:CDS | 35.0% | |
| ATAATCATCCTCTTAACACC+AGG | + | chr7.4:93583531-93583550 | None:intergenic | 35.0% | |
| ATGAATGAAGAGAGGAGATT+GGG | + | chr7.4:93582494-93582513 | None:intergenic | 35.0% | |
| ATTCAGAAGGAAGGGATTAA+TGG | - | chr7.4:93583561-93583580 | MS.gene91171:CDS | 35.0% | |
| GAGCTTCTTTGGATTTCTTA+AGG | + | chr7.4:93582646-93582665 | None:intergenic | 35.0% | |
| GAGGTTAGTGATTGGTATAA+GGG | - | chr7.4:93583384-93583403 | MS.gene91171:intron | 35.0% | |
| GGTAATTTCATCACCATGAA+TGG | - | chr7.4:93582818-93582837 | MS.gene91171:CDS | 35.0% | |
| GGTGTTAAGAGGATGATTAT+GGG | - | chr7.4:93583531-93583550 | MS.gene91171:CDS | 35.0% | |
| GTGTTAAGAGGATGATTATG+GGG | - | chr7.4:93583532-93583551 | MS.gene91171:CDS | 35.0% | |
| TAATGGTGTCTGCGAAAATA+AGG | - | chr7.4:93583578-93583597 | MS.gene91171:CDS | 35.0% | |
| TGAGGTTAGTGATTGGTATA+AGG | - | chr7.4:93583383-93583402 | MS.gene91171:intron | 35.0% | |
| TTAATGGTGAGGTTAGTGAT+TGG | - | chr7.4:93583376-93583395 | MS.gene91171:intron | 35.0% | |
| TTAGGGAAGAGTTTCATGAT+GGG | - | chr7.4:93583205-93583224 | MS.gene91171:intron | 35.0% | |
| TTCCGTTTCGCTACAAAAAA+CGG | - | chr7.4:93583057-93583076 | MS.gene91171:CDS | 35.0% | |
| ! | AGAACATGTTGATTATGGGT+TGG | - | chr7.4:93583347-93583366 | MS.gene91171:intron | 35.0% |
| ! | ATAAGGGTTTGTTTGGTAAC+CGG | - | chr7.4:93583400-93583419 | MS.gene91171:CDS | 35.0% |
| ! | GATTGGTATAAGGGTTTGTT+TGG | - | chr7.4:93583393-93583412 | MS.gene91171:intron | 35.0% |
| ! | GTAGACAAGTTTTACACTGT+TGG | - | chr7.4:93582994-93583013 | MS.gene91171:CDS | 35.0% |
| ! | TGAGCTTTTCCAATAAGTAG+AGG | + | chr7.4:93582775-93582794 | None:intergenic | 35.0% |
| ! | TGGTGTTAAGAGGATGATTA+TGG | - | chr7.4:93583530-93583549 | MS.gene91171:CDS | 35.0% |
| !! | AAGAGTTTCATGATGGGTTT+AGG | - | chr7.4:93583211-93583230 | MS.gene91171:intron | 35.0% |
| !! | AGAGTTTCATGATGGGTTTA+GGG | - | chr7.4:93583212-93583231 | MS.gene91171:intron | 35.0% |
| !! | TATGGGTTGGAGAAGATTAA+TGG | - | chr7.4:93583360-93583379 | MS.gene91171:intron | 35.0% |
| !! | TTTTGGAGATTGACCGTTAT+GGG | - | chr7.4:93583655-93583674 | MS.gene91171:CDS | 35.0% |
| !!! | CTTTTTGAAATCGGTCCATT+CGG | + | chr7.4:93583258-93583277 | None:intergenic | 35.0% |
| AAGAGAGGAGATTGGGAATT+TGG | + | chr7.4:93582487-93582506 | None:intergenic | 40.0% | |
| ATCGATGTTGGTATGTCGAA+AGG | - | chr7.4:93583609-93583628 | MS.gene91171:CDS | 40.0% | |
| ATTTCTTAAGGTCGCCATGA+AGG | + | chr7.4:93582634-93582653 | None:intergenic | 40.0% | |
| GATGAATGAAGAGAGGAGAT+TGG | + | chr7.4:93582495-93582514 | None:intergenic | 40.0% | |
| GTTAGGGAAGAGTTTCATGA+TGG | - | chr7.4:93583204-93583223 | MS.gene91171:intron | 40.0% | |
| GTTGGAGAAGATTAATGGTG+AGG | - | chr7.4:93583365-93583384 | MS.gene91171:intron | 40.0% | |
| TCAATATCCTCACCCCATAA+CGG | + | chr7.4:93583671-93583690 | None:intergenic | 40.0% | |
| TCCGTTAGAAAATGTTCACG+TGG | - | chr7.4:93583170-93583189 | MS.gene91171:CDS | 40.0% | |
| TCTGCGAAAATAAGGCGATT+AGG | - | chr7.4:93583586-93583605 | MS.gene91171:CDS | 40.0% | |
| TGGTTAGAATGGTTTCGTCA+AGG | - | chr7.4:93583099-93583118 | MS.gene91171:CDS | 40.0% | |
| TTTGGAGATTGACCGTTATG+GGG | - | chr7.4:93583656-93583675 | MS.gene91171:CDS | 40.0% | |
| ! | ATGTGTCGATGAATGAAGAG+AGG | + | chr7.4:93582502-93582521 | None:intergenic | 40.0% |
| ! | CGAATGGACCGATTTCAAAA+AGG | - | chr7.4:93583256-93583275 | MS.gene91171:intron | 40.0% |
| ! | GCCACGTGAACATTTTCTAA+CGG | + | chr7.4:93583174-93583193 | None:intergenic | 40.0% |
| !!! | CACCGTTTTTTGTAGCGAAA+CGG | + | chr7.4:93583062-93583081 | None:intergenic | 40.0% |
| !!! | GTTTTGGAGATTGACCGTTA+TGG | - | chr7.4:93583654-93583673 | MS.gene91171:CDS | 40.0% |
| AAATGTGGATGTTGGGAAGG+TGG | - | chr7.4:93583725-93583744 | MS.gene91171:CDS | 45.0% | |
| AAGGCGATTAGGATCGATGT+TGG | - | chr7.4:93583597-93583616 | MS.gene91171:CDS | 45.0% | |
| ATGTTGGGAAGGTGGAAGAA+GGG | - | chr7.4:93583733-93583752 | MS.gene91171:CDS | 45.0% | |
| GATCTCGTGGTTACCATTCA+TGG | + | chr7.4:93582834-93582853 | None:intergenic | 45.0% | |
| GGAAAATGTGGATGTTGGGA+AGG | - | chr7.4:93583722-93583741 | MS.gene91171:CDS | 45.0% | |
| GGCATACGATTCAGAAGGAA+GGG | - | chr7.4:93583553-93583572 | MS.gene91171:CDS | 45.0% | |
| GTTGGTATGTCGAAAGGATG+CGG | - | chr7.4:93583615-93583634 | MS.gene91171:CDS | 45.0% | |
| TATGGGGCATACGATTCAGA+AGG | - | chr7.4:93583548-93583567 | MS.gene91171:CDS | 45.0% | |
| ! | CATGTTTTGTCGACGATTCC+TGG | - | chr7.4:93583510-93583529 | MS.gene91171:CDS | 45.0% |
| !! | TCATGATGGGTTTAGGGCTA+GGG | - | chr7.4:93583218-93583237 | MS.gene91171:intron | 45.0% |
| !! | TTCATGATGGGTTTAGGGCT+AGG | - | chr7.4:93583217-93583236 | MS.gene91171:intron | 45.0% |
| !!! | TTTTGATTTCATCGCCTCCG+CGG | + | chr7.4:93582751-93582770 | None:intergenic | 45.0% |
| AAACGCCAAGCTGCGATTCA+TGG | - | chr7.4:93582794-93582813 | MS.gene91171:CDS | 50.0% | |
| AAAGAAGCTCTTGGCATCGC+CGG | - | chr7.4:93582656-93582675 | MS.gene91171:CDS | 50.0% | |
| AATGTTCACGTGGCGTTTCG+TGG | - | chr7.4:93583180-93583199 | MS.gene91171:CDS | 50.0% | |
| ACCGGAGGAGTCGATTAATC+CGG | + | chr7.4:93582678-93582697 | None:intergenic | 50.0% | |
| ACCTAGGCAAGTGGAAGTCA+AGG | - | chr7.4:93583788-93583807 | MS.gene91171:CDS | 50.0% | |
| AGAACCGCCGGTGTAATTAC+CGG | + | chr7.4:93582696-93582715 | None:intergenic | 50.0% | |
| AGATGGTAGACCTAGGCAAG+TGG | - | chr7.4:93583779-93583798 | MS.gene91171:CDS | 50.0% | |
| AGATTGACCGTTATGGGGTG+AGG | - | chr7.4:93583661-93583680 | MS.gene91171:CDS | 50.0% | |
| CACGAGATCATGAACGCTGA+AGG | - | chr7.4:93582845-93582864 | MS.gene91171:CDS | 50.0% | |
| CGGTCAATCTCCAAAACCTC+AGG | + | chr7.4:93583651-93583670 | None:intergenic | 50.0% | |
| CTTCAGCGTTCATGATCTCG+TGG | + | chr7.4:93582847-93582866 | None:intergenic | 50.0% | |
| GACAATAAGGCGGCGAAAAC+CGG | + | chr7.4:93583422-93583441 | None:intergenic | 50.0% | |
| GACTCCTCCGGTAATTACAC+CGG | - | chr7.4:93582686-93582705 | MS.gene91171:CDS | 50.0% | |
| GATGTTGGGAAGGTGGAAGA+AGG | - | chr7.4:93583732-93583751 | MS.gene91171:CDS | 50.0% | |
| GCATTCCTTCCCCGACAATA+AGG | + | chr7.4:93583435-93583454 | None:intergenic | 50.0% | |
| GGGCATACGATTCAGAAGGA+AGG | - | chr7.4:93583552-93583571 | MS.gene91171:CDS | 50.0% | |
| GGGGAAGGAATGCACTTGTT+TGG | - | chr7.4:93583442-93583461 | MS.gene91171:CDS | 50.0% | |
| TACCACCATGAATCGCAGCT+TGG | + | chr7.4:93582802-93582821 | None:intergenic | 50.0% | |
| TTCCTTCCCCGACAATAAGG+CGG | + | chr7.4:93583432-93583451 | None:intergenic | 50.0% | |
| ! | CGACGATTCCTGGTGTTAAG+AGG | - | chr7.4:93583520-93583539 | MS.gene91171:CDS | 50.0% |
| ! | CGATTAAGCGTGACGGAGAA+GGG | + | chr7.4:93582601-93582620 | None:intergenic | 50.0% |
| !! | GGTTTTCGCCGCCTTATTGT+CGG | - | chr7.4:93583421-93583440 | MS.gene91171:CDS | 50.0% |
| !! | GTTTTCGCCGCCTTATTGTC+GGG | - | chr7.4:93583422-93583441 | MS.gene91171:CDS | 50.0% |
| !! | TGGTGGTTTGCCTGAGGTTT+TGG | - | chr7.4:93583638-93583657 | MS.gene91171:CDS | 50.0% |
| !! | TTTGTCGACTTCTCCGTCAG+CGG | - | chr7.4:93582521-93582540 | MS.gene91171:CDS | 50.0% |
| !! | TTTTCGCCGCCTTATTGTCG+GGG | - | chr7.4:93583423-93583442 | MS.gene91171:CDS | 50.0% |
| ACGTGGCGTTTCGTGGTGTT+AGG | - | chr7.4:93583187-93583206 | MS.gene91171:CDS | 55.0% | |
| ATCGCCATCGGTGACCTTCA+TGG | - | chr7.4:93582617-93582636 | MS.gene91171:CDS | 55.0% | |
| ATGTCGAAAGGATGCGGTGG+TGG | - | chr7.4:93583621-93583640 | MS.gene91171:CDS | 55.0% | |
| CCGATGGCGATTAAGCGTGA+CGG | + | chr7.4:93582608-93582627 | None:intergenic | 55.0% | |
| CCGTCACGCTTAATCGCCAT+CGG | - | chr7.4:93582605-93582624 | MS.gene91171:CDS | 55.0% | |
| GCCTTGACTTCCACTTGCCT+AGG | + | chr7.4:93583792-93583811 | None:intergenic | 55.0% | |
| GGCGATGCCAAGAGCTTCTT+TGG | + | chr7.4:93582657-93582676 | None:intergenic | 55.0% | |
| GGGAAGGTGGAAGAAGGGTT+TGG | - | chr7.4:93583738-93583757 | MS.gene91171:CDS | 55.0% | |
| GGTATGTCGAAAGGATGCGG+TGG | - | chr7.4:93583618-93583637 | MS.gene91171:CDS | 55.0% | |
| TCCTCCGGTAATTACACCGG+CGG | - | chr7.4:93582689-93582708 | MS.gene91171:CDS | 55.0% | |
| TCTGCCACCGTCGTTCAAGT+CGG | - | chr7.4:93582713-93582732 | MS.gene91171:CDS | 55.0% | |
| ! | CGTGGCGTTTCGTGGTGTTA+GGG | - | chr7.4:93583188-93583207 | MS.gene91171:CDS | 55.0% |
| ! | GCCGGATTAATCGACTCCTC+CGG | - | chr7.4:93582674-93582693 | MS.gene91171:CDS | 55.0% |
| ! | GCGATTAAGCGTGACGGAGA+AGG | + | chr7.4:93582602-93582621 | None:intergenic | 55.0% |
| ! | TGGGTTTAGGGCTAGGGTTG+CGG | - | chr7.4:93583224-93583243 | MS.gene91171:intron | 55.0% |
| ! | TTAAGCGTGACGGAGAAGGG+AGG | + | chr7.4:93582598-93582617 | None:intergenic | 55.0% |
| !! | ATTGGCGGTGGTGATGATGG+CGG | + | chr7.4:93582566-93582585 | None:intergenic | 55.0% |
| !! | GACATCGCCGACTTGAACGA+CGG | + | chr7.4:93582723-93582742 | None:intergenic | 55.0% |
| !! | GTTGCGGCTTTAAGGCCGAA+TGG | - | chr7.4:93583240-93583259 | MS.gene91171:intron | 55.0% |
| ACCGCCGGTGTAATTACCGG+AGG | + | chr7.4:93582693-93582712 | None:intergenic | 60.0% | |
| CGCCAAGCTGCGATTCATGG+TGG | - | chr7.4:93582797-93582816 | MS.gene91171:CDS | 60.0% | |
| GGGCTAGGGTTGCGGCTTTA+AGG | - | chr7.4:93583232-93583251 | MS.gene91171:intron | 60.0% | |
| GTCGCCATGAAGGTCACCGA+TGG | + | chr7.4:93582624-93582643 | None:intergenic | 60.0% | |
| ! | ATGCGGTGGTGGTTTGCCTG+AGG | - | chr7.4:93583632-93583651 | MS.gene91171:CDS | 60.0% |
| ! | GGGATTGGCGGTGGTGATGA+TGG | + | chr7.4:93582569-93582588 | None:intergenic | 60.0% |
| !! | ATCGCCGACTTGAACGACGG+TGG | + | chr7.4:93582720-93582739 | None:intergenic | 60.0% |
| !! | GTGGTGATGATGGCGGAGGT+GGG | + | chr7.4:93582559-93582578 | None:intergenic | 60.0% |
| AACGACGGTGGCAGAACCGC+CGG | + | chr7.4:93582708-93582727 | None:intergenic | 65.0% | |
| ACGGAGAAGGGAGGCGAGTG+GGG | + | chr7.4:93582589-93582608 | None:intergenic | 65.0% | |
| GAAGGGAGGCGAGTGGGGAT+TGG | + | chr7.4:93582584-93582603 | None:intergenic | 65.0% | |
| GACGGAGAAGGGAGGCGAGT+GGG | + | chr7.4:93582590-93582609 | None:intergenic | 65.0% | |
| TGACGGAGAAGGGAGGCGAG+TGG | + | chr7.4:93582591-93582610 | None:intergenic | 65.0% | |
| TTTCATCGCCTCCGCGGTCG+AGG | + | chr7.4:93582745-93582764 | None:intergenic | 65.0% | |
| ! | ATGGCGGAGGTGGGAGGAAG+AGG | + | chr7.4:93582550-93582569 | None:intergenic | 65.0% |
| ! | CGCCGCCTTATTGTCGGGGA+AGG | - | chr7.4:93583427-93583446 | MS.gene91171:CDS | 65.0% |
| ! | GTCGACTTCTCCGTCAGCGG+CGG | - | chr7.4:93582524-93582543 | MS.gene91171:CDS | 65.0% |
| !! | GGTGGTGATGATGGCGGAGG+TGG | + | chr7.4:93582560-93582579 | None:intergenic | 65.0% |
| !! | GTGATGATGGCGGAGGTGGG+AGG | + | chr7.4:93582556-93582575 | None:intergenic | 65.0% |
| GAGGAAGAGGCCGCCGCTGA+CGG | + | chr7.4:93582537-93582556 | None:intergenic | 70.0% | |
| GGGAGGCGAGTGGGGATTGG+CGG | + | chr7.4:93582581-93582600 | None:intergenic | 70.0% | |
| GTCGGCGATGTCCTCGACCG+CGG | - | chr7.4:93582731-93582750 | MS.gene91171:CDS | 70.0% | |
| ! | AGGCGAGTGGGGATTGGCGG+TGG | + | chr7.4:93582578-93582597 | None:intergenic | 70.0% |
| !! | GGCGGTGGTGATGATGGCGG+AGG | + | chr7.4:93582563-93582582 | None:intergenic | 70.0% |
| GGCGATGTCCTCGACCGCGG+AGG | - | chr7.4:93582734-93582753 | MS.gene91171:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 93582446 | 93583815 | 93582446 | ID=MS.gene91171 |
| chr7.4 | mRNA | 93582446 | 93583815 | 93582446 | ID=MS.gene91171.t1;Parent=MS.gene91171 |
| chr7.4 | exon | 93583395 | 93583815 | 93583395 | ID=MS.gene91171.t1.exon1;Parent=MS.gene91171.t1 |
| chr7.4 | CDS | 93583395 | 93583815 | 93583395 | ID=cds.MS.gene91171.t1;Parent=MS.gene91171.t1 |
| chr7.4 | exon | 93582446 | 93583209 | 93582446 | ID=MS.gene91171.t1.exon2;Parent=MS.gene91171.t1 |
| chr7.4 | CDS | 93582446 | 93583209 | 93582446 | ID=cds.MS.gene91171.t1;Parent=MS.gene91171.t1 |
| Gene Sequence |
| Protein sequence |
