AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91227

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91227.t1 MTR_5g074740 97.523 323 8 0 1 323 1 323 0.0 655
MS.gene91227.t1 MTR_5g074760 95.652 322 14 0 1 322 1 322 0.0 643
MS.gene91227.t1 MTR_5g074710 87.616 323 40 0 1 323 1 323 0.0 602
MS.gene91227.t1 MTR_5g074860 71.924 317 89 0 4 320 8 324 1.88e-172 481
MS.gene91227.t1 MTR_3g467600 64.375 320 112 2 4 321 5 324 4.14e-146 414
MS.gene91227.t1 MTR_5g074700 88.053 226 13 1 98 323 5 216 3.97e-144 405
MS.gene91227.t1 MTR_5g074860 62.461 317 80 1 4 320 8 285 4.17e-140 398
MS.gene91227.t1 MTR_4g029170 60.923 325 119 5 1 321 1 321 3.92e-135 386
MS.gene91227.t1 MTR_4g029180 64.527 296 99 4 28 321 30 321 5.65e-130 373
MS.gene91227.t1 MTR_5g074970 56.875 320 125 8 7 321 15 326 1.68e-120 350
MS.gene91227.t1 MTR_3g466200 55.000 320 134 8 6 321 7 320 7.54e-118 342
MS.gene91227.t1 MTR_3g072190 55.346 318 134 5 7 321 6 318 1.20e-115 337
MS.gene91227.t1 MTR_5g083860 54.321 324 139 6 1 321 8 325 6.71e-115 335
MS.gene91227.t1 MTR_3g094650 54.969 322 136 6 3 321 7 322 7.71e-115 335
MS.gene91227.t1 MTR_2g084080 53.416 322 144 5 1 321 1 317 2.07e-114 334
MS.gene91227.t1 MTR_4g029200 54.575 306 133 4 17 321 38 338 1.48e-113 332
MS.gene91227.t1 MTR_2g084020 55.063 316 135 5 9 321 7 318 1.88e-113 331
MS.gene91227.t1 MTR_2g084010 56.291 302 127 4 21 321 21 318 1.03e-112 329
MS.gene91227.t1 MTR_2g084000 52.632 323 147 5 1 321 1 319 3.14e-112 328
MS.gene91227.t1 MTR_2g084110 54.747 316 135 6 9 321 7 317 3.45e-111 325
MS.gene91227.t1 MTR_1g115900 53.459 318 139 7 7 321 10 321 7.06e-111 325
MS.gene91227.t1 MTR_2g084090 54.194 310 135 6 14 321 14 318 3.44e-110 323
MS.gene91227.t1 MTR_7g072480 53.416 322 143 5 1 321 1 316 2.61e-109 321
MS.gene91227.t1 MTR_3g094670 55.000 320 132 6 5 321 12 322 3.97e-109 320
MS.gene91227.t1 MTR_7g072510 52.396 313 140 5 10 321 8 312 4.50e-109 320
MS.gene91227.t1 MTR_3g094630 54.658 322 137 6 3 321 7 322 2.25e-108 318
MS.gene91227.t1 MTR_4g083710 50.313 320 150 6 7 321 9 324 1.94e-106 314
MS.gene91227.t1 MTR_3g466180 53.185 314 141 4 9 321 15 323 5.68e-105 310
MS.gene91227.t1 MTR_4g029190 51.815 303 137 6 23 321 43 340 5.85e-104 308
MS.gene91227.t1 MTR_5g021060 52.459 305 133 5 25 321 30 330 5.05e-103 305
MS.gene91227.t1 MTR_7g026990 49.367 316 154 6 7 321 12 322 1.04e-102 304
MS.gene91227.t1 MTR_8g076820 51.475 305 136 5 25 321 30 330 1.41e-100 299
MS.gene91227.t1 MTR_4g074995 48.896 317 140 7 10 321 9 308 1.32e-98 293
MS.gene91227.t1 MTR_2g029560 47.368 323 158 6 8 321 6 325 6.93e-96 288
MS.gene91227.t1 MTR_2g028980 48.903 319 152 5 12 322 16 331 2.72e-95 286
MS.gene91227.t1 MTR_7g093370 45.370 324 165 5 7 321 51 371 2.54e-94 285
MS.gene91227.t1 MTR_2g029800 50.163 307 142 5 23 321 27 330 5.07e-94 283
MS.gene91227.t1 MTR_1g022970 48.197 305 147 4 25 321 46 347 1.27e-93 282
MS.gene91227.t1 MTR_1g054205 44.242 330 170 6 1 321 2 326 2.38e-93 280
MS.gene91227.t1 MTR_4g125940 48.765 324 150 7 10 322 12 330 1.25e-92 279
MS.gene91227.t1 MTR_3g072190 55.686 255 107 4 68 321 2 251 7.16e-92 274
MS.gene91227.t1 MTR_2g040000 47.003 317 152 7 16 321 20 331 2.35e-90 273
MS.gene91227.t1 MTR_4g074990 45.794 321 146 7 6 321 8 305 4.27e-90 271
MS.gene91227.t1 MTR_2g029815 45.231 325 167 4 5 321 9 330 4.35e-90 273
MS.gene91227.t1 MTR_5g017850 48.765 324 149 10 9 321 9 326 5.46e-90 272
MS.gene91227.t1 MTR_2g029830 47.231 307 151 4 23 321 26 329 1.83e-89 271
MS.gene91227.t1 MTR_4g122640 46.580 307 154 5 21 321 34 336 1.25e-88 269
MS.gene91227.t1 MTR_4g031140 44.785 326 166 5 3 321 6 324 1.47e-88 269
MS.gene91227.t1 MTR_2g029860 44.648 327 170 4 3 321 7 330 1.48e-88 269
MS.gene91227.t1 MTR_2g029820 45.231 325 167 4 5 321 9 330 2.01e-88 269
MS.gene91227.t1 MTR_5g017860 47.531 324 153 10 9 321 9 326 2.69e-88 268
MS.gene91227.t1 MTR_2g029740 45.312 320 164 4 11 322 15 331 2.76e-88 268
MS.gene91227.t1 MTR_2g029730 46.012 326 164 6 5 321 4 326 3.52e-88 268
MS.gene91227.t1 MTR_4g030890 46.302 311 153 5 18 321 93 396 2.43e-87 268
MS.gene91227.t1 MTR_5g049280 46.012 326 162 8 7 321 15 337 1.20e-86 264
MS.gene91227.t1 MTR_4g125940 51.971 279 119 6 54 322 2 275 2.39e-86 261
MS.gene91227.t1 MTR_5g014100 47.419 310 146 6 25 321 26 331 3.86e-86 262
MS.gene91227.t1 MTR_2g029750 45.625 320 163 5 11 322 15 331 1.08e-85 262
MS.gene91227.t1 MTR_2g029910 46.129 310 155 5 23 323 28 334 1.10e-84 259
MS.gene91227.t1 MTR_4g074980 44.795 317 144 8 6 321 8 294 1.05e-82 252
MS.gene91227.t1 MTR_2g029850 44.951 307 158 4 23 321 27 330 5.81e-82 252
MS.gene91227.t1 MTR_1g101830 44.308 325 159 11 5 321 12 322 1.83e-80 247
MS.gene91227.t1 MTR_1g077000 42.405 316 172 7 7 321 21 327 4.87e-80 246
MS.gene91227.t1 MTR_3g092990 40.061 327 182 6 4 321 5 326 2.70e-76 237
MS.gene91227.t1 MTR_1g086490 40.419 334 178 6 7 323 13 342 3.83e-75 234
MS.gene91227.t1 MTR_0155s0040 42.333 300 163 8 23 321 25 315 4.47e-75 233
MS.gene91227.t1 MTR_4g074980 48.606 251 119 6 6 251 8 253 1.31e-74 230
MS.gene91227.t1 MTR_4g046713 40.000 330 183 8 1 321 3 326 1.45e-73 230
MS.gene91227.t1 MTR_1g086320 39.571 326 181 6 7 321 13 333 1.67e-73 230
MS.gene91227.t1 MTR_1g038680 41.447 304 163 7 29 321 33 332 2.32e-73 229
MS.gene91227.t1 MTR_2g088770 41.867 332 175 11 1 321 1 325 2.05e-72 227
MS.gene91227.t1 MTR_2g029830 47.876 259 124 4 71 321 6 261 3.73e-71 223
MS.gene91227.t1 MTR_1g025980 40.615 325 174 10 1 316 1 315 1.66e-69 219
MS.gene91227.t1 MTR_5g022870 39.210 329 179 9 1 321 1 316 5.28e-68 215
MS.gene91227.t1 MTR_7g029030 40.557 323 180 8 4 321 5 320 1.76e-66 211
MS.gene91227.t1 MTR_6g027440 37.267 322 189 6 5 321 1 314 2.92e-66 211
MS.gene91227.t1 MTR_8g075100 40.328 305 163 8 25 321 26 319 2.96e-66 211
MS.gene91227.t1 MTR_7g107520 40.060 332 176 10 1 321 1 320 1.60e-65 209
MS.gene91227.t1 MTR_2g008710 41.639 305 156 9 29 321 31 325 2.24e-65 209
MS.gene91227.t1 MTR_3g092990 37.920 327 178 7 4 321 5 315 8.90e-65 207
MS.gene91227.t1 MTR_4g133800 39.803 304 161 11 29 323 45 335 5.91e-62 200
MS.gene91227.t1 MTR_1g009750 37.576 330 189 8 3 321 5 328 1.85e-61 199
MS.gene91227.t1 MTR_7g086820 37.908 306 174 8 23 322 18 313 1.85e-61 198
MS.gene91227.t1 MTR_4g087965 40.717 307 164 9 24 317 41 342 1.98e-60 197
MS.gene91227.t1 MTR_1g090760 36.086 327 193 7 8 323 11 332 4.96e-60 195
MS.gene91227.t1 MTR_2g437770 41.311 305 158 10 25 321 50 341 5.75e-60 196
MS.gene91227.t1 MTR_5g016010 37.160 331 185 9 3 317 2 325 7.84e-60 194
MS.gene91227.t1 MTR_8g062780 38.339 313 178 6 21 323 19 326 1.58e-59 194
MS.gene91227.t1 MTR_4g114210 38.272 324 174 10 14 321 7 320 2.73e-59 193
MS.gene91227.t1 MTR_4g127670 39.936 313 161 10 24 321 23 323 8.33e-59 192
MS.gene91227.t1 MTR_7g086870 36.913 298 179 6 25 321 22 311 1.72e-58 191
MS.gene91227.t1 MTR_4g095450 37.855 317 180 8 10 317 12 320 4.18e-57 187
MS.gene91227.t1 MTR_3g072210 52.660 188 84 4 136 321 54 238 7.71e-57 184
MS.gene91227.t1 MTR_2g099175 36.047 344 185 13 4 322 3 336 2.30e-55 183
MS.gene91227.t1 MTR_0286s0010 36.111 324 189 9 10 321 17 334 5.03e-55 182
MS.gene91227.t1 MTR_6g008075 36.111 324 189 9 10 321 17 334 5.03e-55 182
MS.gene91227.t1 MTR_2g078610 35.503 338 172 9 23 320 74 405 2.25e-53 180
MS.gene91227.t1 MTR_2g077990 35.799 338 171 9 23 320 74 405 5.59e-53 179
MS.gene91227.t1 MTR_2g067440 36.202 337 168 10 23 320 58 386 1.57e-52 177
MS.gene91227.t1 MTR_2g008160 37.342 316 167 9 23 321 22 323 1.87e-52 175
MS.gene91227.t1 MTR_6g043280 35.505 307 184 11 20 321 35 332 4.08e-51 172
MS.gene91227.t1 MTR_1g066710 35.410 305 185 7 23 321 25 323 6.20e-50 169
MS.gene91227.t1 MTR_6g043460 34.756 328 191 10 3 317 7 324 8.55e-50 169
MS.gene91227.t1 MTR_1g009750 34.242 330 183 8 3 321 5 311 1.55e-49 167
MS.gene91227.t1 MTR_6g043240 36.482 307 178 11 20 321 37 331 2.23e-49 168
MS.gene91227.t1 MTR_1g066380 34.641 306 188 7 22 321 24 323 4.20e-48 164
MS.gene91227.t1 MTR_2g078280 35.692 325 163 9 23 307 74 392 6.43e-48 166
MS.gene91227.t1 MTR_3g105790 34.743 331 197 6 1 321 1 322 1.32e-47 163
MS.gene91227.t1 MTR_4g132490 31.148 305 198 5 24 321 28 327 1.36e-47 163
MS.gene91227.t1 MTR_2g008730 34.627 335 171 10 1 321 1 301 1.81e-47 162
MS.gene91227.t1 MTR_1g066640 34.754 305 187 7 23 321 25 323 3.03e-47 162
MS.gene91227.t1 MTR_1g066680 34.098 305 188 8 23 321 25 322 5.25e-45 156
MS.gene91227.t1 MTR_0147s0010 32.716 324 171 9 25 320 77 381 6.96e-45 157
MS.gene91227.t1 MTR_2g067450 36.306 314 171 11 23 320 9 309 1.69e-44 154
MS.gene91227.t1 MTR_5g033470 31.613 310 194 8 25 321 73 377 3.16e-43 153
MS.gene91227.t1 MTR_7g072490 41.224 245 84 7 71 314 2 187 3.91e-43 148
MS.gene91227.t1 MTR_3g072260 57.364 129 52 2 7 133 6 133 2.03e-42 144
MS.gene91227.t1 MTR_4g132110 32.895 304 192 6 25 322 32 329 2.07e-42 149
MS.gene91227.t1 MTR_2g008160 34.194 310 150 9 23 321 22 288 2.62e-40 143
MS.gene91227.t1 MTR_4g132110 32.248 307 195 6 25 322 32 334 2.70e-40 144
MS.gene91227.t1 MTR_2g029880 42.021 188 93 3 143 323 12 190 8.54e-39 137
MS.gene91227.t1 MTR_5g074770 57.143 112 43 1 209 320 2 108 1.66e-38 132
MS.gene91227.t1 MTR_2g008160 42.373 177 95 5 23 199 22 191 1.88e-37 133
MS.gene91227.t1 MTR_1g066380 33.205 259 161 7 69 321 3 255 2.84e-35 129
MS.gene91227.t1 MTR_3g105790 36.250 240 138 5 92 321 12 246 1.78e-30 115
MS.gene91227.t1 MTR_3g462850 39.716 141 74 5 192 321 9 149 3.29e-20 85.9
MS.gene91227.t1 MTR_2g078560 30.131 229 117 7 131 320 95 319 1.29e-19 88.2
MS.gene91227.t1 MTR_4g031040 34.911 169 71 3 84 252 1 130 3.67e-19 82.8
MS.gene91227.t1 MTR_1g089005 38.235 136 74 4 9 138 1 132 8.71e-19 82.0
MS.gene91227.t1 MTR_5g058120 36.875 160 86 5 163 317 6 155 2.44e-18 83.2
MS.gene91227.t1 MTR_6g048160 54.795 73 28 3 64 136 22 89 3.69e-18 78.6
MS.gene91227.t1 MTR_3g086710 57.627 59 25 0 12 70 6 64 6.08e-17 75.1
MS.gene91227.t1 MTR_4g114220 45.652 92 37 4 51 140 29 109 1.40e-16 75.9
MS.gene91227.t1 MTR_7g086790 31.915 188 109 7 72 258 17 186 1.63e-16 77.0
MS.gene91227.t1 MTR_2g029930 43.478 92 27 2 23 103 17 94 3.41e-16 73.6
MS.gene91227.t1 MTR_1g098320 41.975 81 45 1 242 322 47 125 5.34e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91227.t1 AT5G05340 56.291 302 124 5 23 321 28 324 5.65e-116 338
MS.gene91227.t1 AT1G14550 50.313 320 152 6 5 321 6 321 4.16e-103 305
MS.gene91227.t1 AT2G18150 49.837 307 142 5 23 321 34 336 1.17e-102 305
MS.gene91227.t1 AT5G58400 49.691 324 153 7 3 321 7 325 1.56e-101 301
MS.gene91227.t1 AT5G66390 51.307 306 137 5 25 322 33 334 2.17e-101 301
MS.gene91227.t1 AT5G58390 52.516 318 142 7 8 321 4 316 5.18e-101 300
MS.gene91227.t1 AT4G36430 49.837 307 142 5 23 321 28 330 3.77e-99 295
MS.gene91227.t1 AT2G18140 50.492 305 139 5 25 321 35 335 4.15e-99 295
MS.gene91227.t1 AT1G14540 49.502 301 146 5 23 321 19 315 9.26e-96 286
MS.gene91227.t1 AT5G06720 44.272 323 169 4 7 321 14 333 4.40e-94 283
MS.gene91227.t1 AT3G50990 47.436 312 152 5 19 322 35 342 8.02e-94 282
MS.gene91227.t1 AT1G44970 47.231 307 151 4 23 321 43 346 2.30e-93 281
MS.gene91227.t1 AT4G08770 48.726 314 148 6 18 321 17 327 2.79e-93 281
MS.gene91227.t1 AT2G38390 48.701 308 146 5 23 321 29 333 1.00e-90 275
MS.gene91227.t1 AT5G06730 43.034 323 173 4 7 321 15 334 2.25e-90 274
MS.gene91227.t1 AT4G08780 47.771 314 151 6 18 321 17 327 2.34e-90 273
MS.gene91227.t1 AT5G19890 46.319 326 156 8 6 321 11 327 7.99e-89 269
MS.gene91227.t1 AT3G49120 46.645 313 154 6 19 321 26 335 1.43e-88 269
MS.gene91227.t1 AT2G38380 48.377 308 147 5 23 321 29 333 2.80e-88 268
MS.gene91227.t1 AT3G32980 47.249 309 150 6 23 321 29 334 3.65e-88 268
MS.gene91227.t1 AT3G49110 46.926 309 151 6 23 321 31 336 2.95e-87 266
MS.gene91227.t1 AT1G49570 48.039 306 143 7 23 317 46 346 2.77e-86 263
MS.gene91227.t1 AT1G68850 43.491 338 166 10 4 321 3 335 9.81e-84 256
MS.gene91227.t1 AT4G16270 46.333 300 147 6 30 321 55 348 1.45e-83 256
MS.gene91227.t1 AT2G35380 45.427 328 159 8 8 321 14 335 1.20e-82 253
MS.gene91227.t1 AT5G51890 44.308 325 161 11 8 321 7 322 2.59e-81 249
MS.gene91227.t1 AT2G22420 40.810 321 174 6 11 322 7 320 5.60e-80 246
MS.gene91227.t1 AT1G71695 43.322 307 165 6 19 321 38 339 1.13e-79 246
MS.gene91227.t1 AT5G19880 43.293 328 170 6 5 321 7 329 7.79e-79 243
MS.gene91227.t1 AT3G01190 43.421 304 157 7 25 321 26 321 4.67e-75 234
MS.gene91227.t1 AT5G42180 40.549 328 175 9 1 320 1 316 2.78e-73 229
MS.gene91227.t1 AT4G33420 42.617 298 161 7 25 321 37 325 5.57e-73 228
MS.gene91227.t1 AT5G15180 41.486 323 175 7 7 321 13 329 8.30e-73 228
MS.gene91227.t1 AT4G33420 42.617 298 161 7 25 321 84 372 2.79e-72 228
MS.gene91227.t1 AT4G11290 38.580 324 184 8 8 321 8 326 1.65e-71 224
MS.gene91227.t1 AT1G05260 38.554 332 188 9 1 322 1 326 4.04e-70 221
MS.gene91227.t1 AT3G03670 38.769 325 177 9 8 321 8 321 4.28e-70 221
MS.gene91227.t1 AT1G05240 41.667 300 158 7 28 317 29 321 6.24e-70 221
MS.gene91227.t1 AT1G05250 41.667 300 158 7 28 317 29 321 6.24e-70 221
MS.gene91227.t1 AT3G21770 40.514 311 168 9 17 317 21 324 4.61e-68 216
MS.gene91227.t1 AT5G64120 42.000 300 157 8 29 321 39 328 6.33e-68 216
MS.gene91227.t1 AT5G40150 37.898 314 185 6 13 321 20 328 3.94e-64 206
MS.gene91227.t1 AT5G17820 37.346 324 174 9 5 321 12 313 4.32e-63 202
MS.gene91227.t1 AT3G28200 37.954 303 179 6 23 321 19 316 3.03e-62 201
MS.gene91227.t1 AT5G17820 37.346 324 174 9 5 321 65 366 4.14e-62 202
MS.gene91227.t1 AT5G22410 34.862 327 192 9 3 318 6 322 4.70e-61 198
MS.gene91227.t1 AT5G39580 39.009 323 179 10 7 321 7 319 7.70e-61 197
MS.gene91227.t1 AT4G26010 36.677 319 187 10 5 321 4 309 1.61e-60 196
MS.gene91227.t1 AT4G26010 36.677 319 187 10 5 321 32 337 2.62e-60 196
MS.gene91227.t1 AT2G41480 37.273 330 182 10 5 321 11 328 4.96e-60 195
MS.gene91227.t1 AT1G30870 40.909 308 158 11 25 321 51 345 8.88e-59 192
MS.gene91227.t1 AT5G47000 38.650 326 185 8 5 323 15 332 1.97e-58 191
MS.gene91227.t1 AT2G18980 36.905 336 184 11 1 321 1 323 4.09e-58 190
MS.gene91227.t1 AT4G37530 38.978 313 169 8 23 321 25 329 8.97e-58 189
MS.gene91227.t1 AT2G35380 45.020 251 121 6 84 321 1 247 1.62e-57 186
MS.gene91227.t1 AT1G34510 36.893 309 184 9 14 321 11 309 1.66e-57 188
MS.gene91227.t1 AT5G64110 38.226 327 182 9 5 321 14 330 5.01e-57 187
MS.gene91227.t1 AT5G64100 37.954 303 168 9 28 321 40 331 1.01e-56 187
MS.gene91227.t1 AT4G17690 38.217 314 182 7 16 323 17 324 1.09e-56 186
MS.gene91227.t1 AT4G30170 37.942 311 171 10 23 321 25 325 2.48e-56 186
MS.gene91227.t1 AT1G24110 35.625 320 188 8 14 321 9 322 8.93e-56 184
MS.gene91227.t1 AT2G39040 39.172 314 169 10 23 321 44 350 3.91e-55 183
MS.gene91227.t1 AT4G33870 33.234 337 174 9 28 320 71 400 7.12e-54 181
MS.gene91227.t1 AT5G67400 37.160 331 184 10 8 321 6 329 1.15e-53 179
MS.gene91227.t1 AT4G37520 37.061 313 175 8 23 321 25 329 2.71e-53 178
MS.gene91227.t1 AT2G34060 35.484 341 189 12 3 318 9 343 4.99e-53 177
MS.gene91227.t1 AT5G14130 34.769 325 176 8 16 321 23 330 1.68e-52 176
MS.gene91227.t1 AT5G14130 34.769 325 176 8 16 321 64 371 3.55e-52 176
MS.gene91227.t1 AT4G25980 34.139 331 198 9 2 321 5 326 8.15e-52 174
MS.gene91227.t1 AT3G49960 37.025 316 175 10 21 321 23 329 1.57e-51 173
MS.gene91227.t1 AT4G37520 36.741 313 173 9 23 321 25 326 2.27e-51 173
MS.gene91227.t1 AT2G24800 35.256 312 180 7 22 321 28 329 3.56e-50 170
MS.gene91227.t1 AT1G77100 35.780 327 189 10 5 321 4 319 3.64e-50 169
MS.gene91227.t1 AT5G24070 34.969 326 185 11 11 321 22 335 1.44e-49 168
MS.gene91227.t1 AT2G43480 33.851 322 187 10 15 321 25 335 3.56e-49 167
MS.gene91227.t1 AT4G37530 39.615 260 137 7 23 268 25 278 5.48e-49 165
MS.gene91227.t1 AT4G31760 33.333 324 197 7 8 321 12 326 6.51e-49 166
MS.gene91227.t1 AT2G37130 35.000 300 184 7 28 321 2 296 9.37e-47 160
MS.gene91227.t1 AT2G37130 34.754 305 188 7 23 321 28 327 1.26e-46 160
MS.gene91227.t1 AT3G17070 32.051 312 187 8 25 321 38 339 6.17e-45 156
MS.gene91227.t1 AT4G21960 31.908 304 195 6 25 322 31 328 2.95e-42 149
MS.gene91227.t1 AT4G25980 39.394 198 111 6 2 199 50 238 1.38e-37 135
MS.gene91227.t1 AT5G39580 40.816 196 108 6 7 202 7 194 1.05e-35 129
MS.gene91227.t1 AT2G24800 40.698 172 95 3 22 193 28 192 6.27e-31 117
MS.gene91227.t1 AT3G17070 29.577 284 174 9 53 321 4 276 1.22e-30 117

Find 49 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTAATTGAATTGATATT+TGG 0.121288 5.1:+57363358 None:intergenic
CAAATTCTGTCATAATAATT+AGG 0.165268 5.1:+57364287 None:intergenic
CCAAATATCAATTCAATTAG+AGG 0.217538 5.1:-57363358 MS.gene91227:CDS
GAAGCCTCTTACCGGGAAAA+AGG 0.239549 5.1:-57362488 MS.gene91227:CDS
TTGCAAATTGGCTGCAAAAT+TGG 0.258452 5.1:+57362747 None:intergenic
GTCTCTAAAGTTAGTGCATT+TGG 0.280533 5.1:+57362798 None:intergenic
TTATCATCGTTGCCGATTCT+AGG 0.284995 5.1:+57362715 None:intergenic
TATCCTTCTTCGTTCATATC+TGG 0.287607 5.1:+57362434 None:intergenic
AAATTCTGTCATAATAATTA+GGG 0.289018 5.1:+57364288 None:intergenic
TATGATGTGTCAACTTTGTT+AGG 0.315727 5.1:+57362670 None:intergenic
AAGGACTTAGTTGTTCTATC+TGG 0.333113 5.1:-57362841 MS.gene91227:CDS
GGTAATTTGAAGCCTCTTAC+CGG 0.347939 5.1:-57362496 MS.gene91227:CDS
AACATCACGTTTGCAAGCTT+TGG 0.348583 5.1:+57363300 None:intergenic
AGTTAGGTGGTAAGCAATAT+TGG 0.366036 5.1:-57362993 MS.gene91227:CDS
TTAACAATTGACTTTATGAT+TGG 0.377211 5.1:+57364251 None:intergenic
ATAGAACAACTAAGTCCTTA+AGG 0.379148 5.1:+57362845 None:intergenic
CTATCTGGTGGACACACAAT+TGG 0.400116 5.1:-57362826 MS.gene91227:CDS
TTTATGATTGGCAATGCCTT+AGG 0.413524 5.1:+57364263 None:intergenic
TGGAGTTTCTATGATTAAGA+TGG 0.424465 5.1:-57362518 MS.gene91227:CDS
TGGTTCTCAAAGTGATAAAT+TGG 0.431919 5.1:-57362584 MS.gene91227:CDS
AGCTGCTATAGCTAAAATAT+CGG 0.458807 5.1:+57363267 None:intergenic
TATTGGTACCAAGTGTTACT+AGG 0.461210 5.1:-57362976 MS.gene91227:CDS
GGAGTTTCTATGATTAAGAT+GGG 0.461747 5.1:-57362517 MS.gene91227:CDS
TTACGTTAACAAAGCAATCA+TGG 0.466047 5.1:+57364174 None:intergenic
CTCTTCTTCCTAGTAACACT+TGG 0.476428 5.1:+57362968 None:intergenic
TATCATCGTTGCCGATTCTA+GGG 0.480032 5.1:+57362716 None:intergenic
GTCACATGGACTAAACCTTA+AGG 0.488752 5.1:-57362860 MS.gene91227:CDS
TGCAAAATTGGTGTCTATGT+TGG 0.502037 5.1:+57362759 None:intergenic
CAAAAGACATGCCCTAGAAT+CGG 0.503303 5.1:-57362727 MS.gene91227:CDS
TCTTCTCACCAACGAAGGTA+GGG 0.513623 5.1:+57363389 None:intergenic
AAAGCTCTTGATCAGAATGA+AGG 0.528130 5.1:+57362617 None:intergenic
TTGTTAGGAGTAGAATCAAA+TGG 0.530962 5.1:+57362685 None:intergenic
GACTTAGTTGTTCTATCTGG+TGG 0.535722 5.1:-57362838 MS.gene91227:CDS
GAAACTACATAGGGTTGTGA+TGG 0.535813 5.1:-57363433 MS.gene91227:intron
GTAATTTGAAGCCTCTTACC+GGG 0.547800 5.1:-57362495 MS.gene91227:CDS
AATGCACTAACTTTAGAGAC+AGG 0.556592 5.1:-57362795 MS.gene91227:CDS
TTATGACAGAATTTGTCCTA+AGG 0.559599 5.1:-57364279 MS.gene91227:CDS
TTCATTAATTAATAGTTAGG+TGG 0.560575 5.1:-57363006 MS.gene91227:intron
AATAGTTCGTGAGCCACGCA+TGG 0.561525 5.1:-57364222 MS.gene91227:CDS
AGTTGACACATCATATTACA+AGG 0.567334 5.1:-57362662 MS.gene91227:CDS
CTTCTCACCAACGAAGGTAG+GGG 0.584326 5.1:+57363390 None:intergenic
GTCTTCTCACCAACGAAGGT+AGG 0.586647 5.1:+57363388 None:intergenic
GATGACACCCCTACCTTCGT+TGG 0.589855 5.1:-57363397 MS.gene91227:CDS
AAGGCTTTGTTGTATAAACA+AGG 0.605317 5.1:-57362643 MS.gene91227:CDS
ATAGTTCGTGAGCCACGCAT+GGG 0.619809 5.1:-57364221 MS.gene91227:CDS
ATCACAAATTTCAAGTCACA+TGG 0.624562 5.1:-57362874 MS.gene91227:CDS
AGCAACGATGCTCCCATGCG+TGG 0.625399 5.1:+57364209 None:intergenic
TGCAGTCTTCTCACCAACGA+AGG 0.642554 5.1:+57363384 None:intergenic
AATTCTGTCATAATAATTAG+GGG 0.671116 5.1:+57364289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTTTTTTCATGAATT+TGG - chr5.1:57363743-57363762 MS.gene91227:intron 10.0%
!! AAATTCTGTCATAATAATTA+GGG + chr5.1:57362527-57362546 None:intergenic 15.0%
!! AATAATTATGTCAAACAATT+AGG - chr5.1:57363074-57363093 MS.gene91227:intron 15.0%
!!! AATTCATTATTTTTGTAGTT+GGG - chr5.1:57362991-57363010 MS.gene91227:CDS 15.0%
!!! TAATTCATTATTTTTGTAGT+TGG - chr5.1:57362990-57363009 MS.gene91227:CDS 15.0%
!! AATTCTGTCATAATAATTAG+GGG + chr5.1:57362526-57362545 None:intergenic 20.0%
!! AGGTATTAGTTATACTATAA+TGG + chr5.1:57363350-57363369 None:intergenic 20.0%
!! CAAATTCTGTCATAATAATT+AGG + chr5.1:57362528-57362547 None:intergenic 20.0%
!! GCTTTCATTAATTAATAGTT+AGG - chr5.1:57363803-57363822 MS.gene91227:intron 20.0%
!! GTACTATTCATATTAGATAT+TGG + chr5.1:57363021-57363040 None:intergenic 20.0%
!! TTCATTAATTAATAGTTAGG+TGG - chr5.1:57363806-57363825 MS.gene91227:intron 20.0%
!!! TAATTAGAAGTGCAAAATAT+CGG + chr5.1:57363599-57363618 None:intergenic 20.0%
!!! TTAACAATTGACTTTATGAT+TGG + chr5.1:57362564-57362583 None:intergenic 20.0%
! CATTATAATTCAAACCTTAG+AGG - chr5.1:57362907-57362926 MS.gene91227:CDS 25.0%
! CCAAATATCAATTCAATTAG+AGG - chr5.1:57363454-57363473 MS.gene91227:intron 25.0%
! CCTCTAATTGAATTGATATT+TGG + chr5.1:57363457-57363476 None:intergenic 25.0%
! GAACTATATGAAACTACATA+GGG - chr5.1:57363370-57363389 MS.gene91227:CDS 25.0%
! TATGTAGTTTCATATAGTTC+AGG + chr5.1:57363370-57363389 None:intergenic 25.0%
! TGAACTATATGAAACTACAT+AGG - chr5.1:57363369-57363388 MS.gene91227:CDS 25.0%
! TTATATTGCTTCAACAATTG+TGG + chr5.1:57363644-57363663 None:intergenic 25.0%
! TTTACTTTACTTAATGACAC+TGG + chr5.1:57362697-57362716 None:intergenic 25.0%
! TTTGCACTTCTAATTAAACA+AGG - chr5.1:57363603-57363622 MS.gene91227:intron 25.0%
!! TATGCTTTTGCATATGATTT+TGG - chr5.1:57364274-57364293 MS.gene91227:CDS 25.0%
AAGTTTGCAAGAATAGTAGT+TGG - chr5.1:57363113-57363132 MS.gene91227:intron 30.0%
AATATCGGAAACACTTACTA+TGG + chr5.1:57363584-57363603 None:intergenic 30.0%
AGCTGCTATAGCTAAAATAT+CGG + chr5.1:57363548-57363567 None:intergenic 30.0%
AGTTGACACATCATATTACA+AGG - chr5.1:57364150-57364169 MS.gene91227:intron 30.0%
AGTTGTGAGAAGTTGAAAAA+TGG + chr5.1:57363917-57363936 None:intergenic 30.0%
AGTTTGCAAGAATAGTAGTT+GGG - chr5.1:57363114-57363133 MS.gene91227:intron 30.0%
ATAGAACAACTAAGTCCTTA+AGG + chr5.1:57363970-57363989 None:intergenic 30.0%
GGAGTTTCTATGATTAAGAT+GGG - chr5.1:57364295-57364314 MS.gene91227:CDS 30.0%
TATAATTCAAACCTTAGAGG+TGG - chr5.1:57362910-57362929 MS.gene91227:CDS 30.0%
TATGATGTGTCAACTTTGTT+AGG + chr5.1:57364145-57364164 None:intergenic 30.0%
TATGTTCCTTTATGAACGTT+GGG + chr5.1:57362967-57362986 None:intergenic 30.0%
TGGAGTTTCTATGATTAAGA+TGG - chr5.1:57364294-57364313 MS.gene91227:CDS 30.0%
TGGTTCTCAAAGTGATAAAT+TGG - chr5.1:57364228-57364247 MS.gene91227:CDS 30.0%
TTACGTTAACAAAGCAATCA+TGG + chr5.1:57362641-57362660 None:intergenic 30.0%
TTATGACAGAATTTGTCCTA+AGG - chr5.1:57362533-57362552 MS.gene91227:CDS 30.0%
TTATGTTCCTTTATGAACGT+TGG + chr5.1:57362968-57362987 None:intergenic 30.0%
TTGTTAGGAGTAGAATCAAA+TGG + chr5.1:57364130-57364149 None:intergenic 30.0%
! ATCACAAATTTCAAGTCACA+TGG - chr5.1:57363938-57363957 MS.gene91227:intron 30.0%
! CAATTCAATTAGAGGTTTTG+AGG - chr5.1:57363462-57363481 MS.gene91227:intron 30.0%
! TCTGATCAAGAGCTTTTTAA+AGG - chr5.1:57364202-57364221 MS.gene91227:CDS 30.0%
!! AAGGCTTTGTTGTATAAACA+AGG - chr5.1:57364169-57364188 MS.gene91227:intron 30.0%
!! TATCCAATTTGTGCTTTTTG+TGG - chr5.1:57362458-57362477 MS.gene91227:CDS 30.0%
AAACATGAAATCCACCTCTA+AGG + chr5.1:57362924-57362943 None:intergenic 35.0%
AAAGCTCTTGATCAGAATGA+AGG + chr5.1:57364198-57364217 None:intergenic 35.0%
AAGGACTTAGTTGTTCTATC+TGG - chr5.1:57363971-57363990 MS.gene91227:intron 35.0%
AGTCGATGTATTCAAAACTG+CGG + chr5.1:57363686-57363705 None:intergenic 35.0%
AGTTAGGTGGTAAGCAATAT+TGG - chr5.1:57363819-57363838 MS.gene91227:intron 35.0%
TGTGAGAAGTTGAAAAATGG+TGG + chr5.1:57363914-57363933 None:intergenic 35.0%
TTGCAAATTGGCTGCAAAAT+TGG + chr5.1:57364068-57364087 None:intergenic 35.0%
TTTATGATTGGCAATGCCTT+AGG + chr5.1:57362552-57362571 None:intergenic 35.0%
TTTCTTCCCAACGTTCATAA+AGG - chr5.1:57362958-57362977 MS.gene91227:CDS 35.0%
! AATGCACTAACTTTAGAGAC+AGG - chr5.1:57364017-57364036 MS.gene91227:intron 35.0%
! TATTGGTACCAAGTGTTACT+AGG - chr5.1:57363836-57363855 MS.gene91227:intron 35.0%
! TGACCACAAAAAGCACAAAT+TGG + chr5.1:57362464-57362483 None:intergenic 35.0%
! TGCAAAATTGGTGTCTATGT+TGG + chr5.1:57364056-57364075 None:intergenic 35.0%
!! CAAGAGCTTTTTAAAGGTGA+TGG - chr5.1:57364208-57364227 MS.gene91227:CDS 35.0%
!! CGAAATTTCAGTTTTGATCG+CGG + chr5.1:57363717-57363736 None:intergenic 35.0%
!! GTCTCTAAAGTTAGTGCATT+TGG + chr5.1:57364017-57364036 None:intergenic 35.0%
AACATCACGTTTGCAAGCTT+TGG + chr5.1:57363515-57363534 None:intergenic 40.0%
CAAAAGACATGCCCTAGAAT+CGG - chr5.1:57364085-57364104 MS.gene91227:intron 40.0%
CTCTTCTTCCTAGTAACACT+TGG + chr5.1:57363847-57363866 None:intergenic 40.0%
GAAACTACATAGGGTTGTGA+TGG - chr5.1:57363379-57363398 MS.gene91227:CDS 40.0%
GACTTAGTTGTTCTATCTGG+TGG - chr5.1:57363974-57363993 MS.gene91227:intron 40.0%
GAGAAGTTGAAAAATGGTGG+TGG + chr5.1:57363911-57363930 None:intergenic 40.0%
! AGGGCATGTCTTTTGCAAAT+TGG + chr5.1:57364080-57364099 None:intergenic 40.0%
! ATTAGGGGTCAGTTTTGCAA+TGG + chr5.1:57362511-57362530 None:intergenic 40.0%
! GGTAATTTGAAGCCTCTTAC+CGG - chr5.1:57364316-57364335 MS.gene91227:CDS 40.0%
! GTAATTTGAAGCCTCTTACC+GGG - chr5.1:57364317-57364336 MS.gene91227:CDS 40.0%
! GTCACATGGACTAAACCTTA+AGG - chr5.1:57363952-57363971 MS.gene91227:intron 40.0%
!! TATCATCGTTGCCGATTCTA+GGG + chr5.1:57364099-57364118 None:intergenic 40.0%
!! TTATCATCGTTGCCGATTCT+AGG + chr5.1:57364100-57364119 None:intergenic 40.0%
AAGCCTCTTACCGGGAAAAA+GGG - chr5.1:57364325-57364344 MS.gene91227:CDS 45.0%
TCTTCTCACCAACGAAGGTA+GGG + chr5.1:57363426-57363445 None:intergenic 45.0%
! CTATCTGGTGGACACACAAT+TGG - chr5.1:57363986-57364005 MS.gene91227:intron 45.0%
!!! TAATATAGAAATATAAATTT+TGG + chr5.1:57363258-57363277 None:intergenic 5.0%
AATAGTTCGTGAGCCACGCA+TGG - chr5.1:57362590-57362609 MS.gene91227:CDS 50.0%
ATAGTTCGTGAGCCACGCAT+GGG - chr5.1:57362591-57362610 MS.gene91227:CDS 50.0%
CTTCTCACCAACGAAGGTAG+GGG + chr5.1:57363425-57363444 None:intergenic 50.0%
GAAGCCTCTTACCGGGAAAA+AGG - chr5.1:57364324-57364343 MS.gene91227:CDS 50.0%
GTCTTCTCACCAACGAAGGT+AGG + chr5.1:57363427-57363446 None:intergenic 50.0%
GTTGTCGCATGCAAGTAGCT+TGG + chr5.1:57362861-57362880 None:intergenic 50.0%
TGCAGTCTTCTCACCAACGA+AGG + chr5.1:57363431-57363450 None:intergenic 50.0%
! CCTGATCTCACCCTTTTTCC+CGG + chr5.1:57364338-57364357 None:intergenic 50.0%
! GGGGTCAGTTTTGCAATGGT+AGG + chr5.1:57362507-57362526 None:intergenic 50.0%
! TCACCCTTTTTCCCGGTAAG+AGG + chr5.1:57364331-57364350 None:intergenic 50.0%
CCGGGAAAAAGGGTGAGATC+AGG - chr5.1:57364335-57364354 MS.gene91227:CDS 55.0%
CGCATGCAAGTAGCTTGGCT+GGG + chr5.1:57362856-57362875 None:intergenic 55.0%
GATGACACCCCTACCTTCGT+TGG - chr5.1:57363415-57363434 MS.gene91227:CDS 55.0%
GCATGCAAGTAGCTTGGCTG+GGG + chr5.1:57362855-57362874 None:intergenic 55.0%
TCGCATGCAAGTAGCTTGGC+TGG + chr5.1:57362857-57362876 None:intergenic 55.0%
AGCAACGATGCTCCCATGCG+TGG + chr5.1:57362606-57362625 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 57362447 57364387 57362447 ID=MS.gene91227
chr5.1 mRNA 57362447 57364387 57362447 ID=MS.gene91227.t1;Parent=MS.gene91227
chr5.1 exon 57364178 57364387 57364178 ID=MS.gene91227.t1.exon1;Parent=MS.gene91227.t1
chr5.1 CDS 57364178 57364387 57364178 ID=cds.MS.gene91227.t1;Parent=MS.gene91227.t1
chr5.1 exon 57363249 57363443 57363249 ID=MS.gene91227.t1.exon2;Parent=MS.gene91227.t1
chr5.1 CDS 57363249 57363443 57363249 ID=cds.MS.gene91227.t1;Parent=MS.gene91227.t1
chr5.1 exon 57362447 57363013 57362447 ID=MS.gene91227.t1.exon3;Parent=MS.gene91227.t1
chr5.1 CDS 57362447 57363013 57362447 ID=cds.MS.gene91227.t1;Parent=MS.gene91227.t1
Gene Sequence

>MS.gene91227

ATGGATTCTCGTATCCAATTTGTGCTTTTTGTGGTCACTTTTGCAACAATTTTGAGTCCTACCATTGCAAAACTGACCCCTAATTATTATGACAGAATTTGTCCTAAGGCATTGCCAATCATAAAGTCAATTGTTAAGCAAGCAATAGTTCGTGAGCCACGCATGGGAGCATCGTTGCTACGTTTGCATTTCCATGATTGCTTTGTTAACGTAAGTTTGTTAATTTCATAAATTTATGATACTATTTCCAGTGTCATTAAGTAAAGTAAATATAATTCAATCAGAAAAAGAAAAAAAAAAGTAAAGTCAATATAATGTACATTCTCTTATAAGTAAAAATGTTTGTAAATTAATGTTTATGTTAGTTTTCAGTGTTTGAACTTTATCTTTTGATATTTCTTAGTTCCCCAGCCAAGCTACTTGCATGCGACAACAAAATTCATTGTTGCTTTTTTTTACACATTATAATTCAAACCTTAGAGGTGGATTTCATGTTTCTTCGTTTTAATTTTTTCTTCCCAACGTTCATAAAGGAACATAAATTAATTCATTATTTTTGTAGTTGGGCAAGCCAATATCTAATATGAATAGTACATATTTTATTCTGCTATTGATATTTTTATGTCTAATAATTATGTCAAACAATTAGGTATCAATCAATGATGCAAGTTTGCAAGAATAGTAGTTGGGTTCAAGTTGTACTCATGCAATAGACTTAACTTTTTTTTTATAACTAGAAGACAAAGTACAACAATAATCAAACAAGTGATAATTTTGTAACATACTAAAATATTGATACTTTTTTTATCCAAAATTTATATTTCTATATTAATTTAAAACTTCGTATGAGTTAAATTATAGTTGCATCATATTCATGTCAAAGTTACATAAGAATAATTTCCATTATAGTATAACTAATACCTGAACTATATGAAACTACATAGGGTTGTGATGGATCAGTTCTACTCGATGACACCCCTACCTTCGTTGGTGAGAAGACTGCATTTCCAAATATCAATTCAATTAGAGGTTTTGAGGTTGTTGATCAAATTAAAGAAGCTGTTACCAAAGCTTGCAAACGTGATGTTGTATCTTGTGCCGATATTTTAGCTATAGCAGCTCGAGACTCTGTAGCCATAGTAAGTGTTTCCGATATTTTGCACTTCTAATTAAACAAGGTTTTAAATTGCATAACCACAATTGTTGAAGCAATATAAAAGATTTTGAGATCTATAACCGCAGTTTTGAATACATCGACTGCATTTAACCGCGATCAAAACTGAAATTTCGAGTAGTATATTTTTTTTTCATGAATTTGGAGCAGTATAAATGTAAAACTAGCAACTAACAAAATTTGCTTTCATTAATTAATAGTTAGGTGGTAAGCAATATTGGTACCAAGTGTTACTAGGAAGAAGAGATTCAAGATTTGCAAGCAGAGATGCAGCAAATACAAATCTTCCACCACCATTTTTCAACTTCTCACAACTCATCACAAATTTCAAGTCACATGGACTAAACCTTAAGGACTTAGTTGTTCTATCTGGTGGACACACAATTGGATTTTCCAAATGCACTAACTTTAGAGACAGGATCTACAATGACACCAACATAGACACCAATTTTGCAGCCAATTTGCAAAAGACATGCCCTAGAATCGGCAACGATGATAATTTAGCACCATTTGATTCTACTCCTAACAAAGTTGACACATCATATTACAAGGCTTTGTTGTATAAACAAGGTCTCCTTCATTCTGATCAAGAGCTTTTTAAAGGTGATGGTTCTCAAAGTGATAAATTGGTGCAGTTATATAGTAAAAATTCTTATGCTTTTGCATATGATTTTGGAGTTTCTATGATTAAGATGGGTAATTTGAAGCCTCTTACCGGGAAAAAGGGTGAGATCAGGTGCAATTGCAGAAAAGTTAACCAGATATGA
Protein sequence

>MS.gene91227.t1

MDSRIQFVLFVVTFATILSPTIAKLTPNYYDRICPKALPIIKSIVKQAIVREPRMGASLLRLHFHDCFVNGCDGSVLLDDTPTFVGEKTAFPNINSIRGFEVVDQIKEAVTKACKRDVVSCADILAIAARDSVAILGGKQYWYQVLLGRRDSRFASRDAANTNLPPPFFNFSQLITNFKSHGLNLKDLVVLSGGHTIGFSKCTNFRDRIYNDTNIDTNFAANLQKTCPRIGNDDNLAPFDSTPNKVDTSYYKALLYKQGLLHSDQELFKGDGSQSDKLVQLYSKNSYAFAYDFGVSMIKMGNLKPLTGKKGEIRCNCRKVNQI