Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91301.t1 | XP_003592502.1 | 61.5 | 278 | 78 | 5 | 3 | 279 | 2 | 251 | 1.20E-55 | 226.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91301.t1 | Q9SSW2 | 47.6 | 191 | 63 | 6 | 94 | 274 | 98 | 261 | 7.1e-25 | 115.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91301.t1 | G7IEV2 | 61.5 | 278 | 78 | 5 | 3 | 279 | 2 | 251 | 8.5e-56 | 226.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene91301.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054601 | MS.gene91301 | 0.806262 | 8.96E-50 | -1.69E-46 |
MS.gene055549 | MS.gene91301 | 0.809128 | 2.21E-50 | -1.69E-46 |
MS.gene055550 | MS.gene91301 | 0.818341 | 2.06E-52 | -1.69E-46 |
MS.gene060237 | MS.gene91301 | 0.810525 | 1.10E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91301.t1 | MTR_1g106730 | 79.505 | 283 | 19 | 9 | 3 | 279 | 2 | 251 | 1.73e-143 | 403 |
MS.gene91301.t1 | MTR_3g102980 | 45.652 | 276 | 99 | 12 | 4 | 273 | 1 | 231 | 1.25e-53 | 174 |
MS.gene91301.t1 | MTR_1g018420 | 45.852 | 229 | 66 | 9 | 55 | 270 | 38 | 221 | 2.19e-46 | 155 |
MS.gene91301.t1 | MTR_4g028610 | 32.000 | 200 | 72 | 5 | 41 | 176 | 136 | 335 | 6.61e-21 | 92.4 |
MS.gene91301.t1 | MTR_0160s0030 | 31.188 | 202 | 86 | 5 | 55 | 227 | 164 | 341 | 3.33e-19 | 86.7 |
MS.gene91301.t1 | MTR_4g027440 | 35.664 | 143 | 73 | 4 | 94 | 225 | 212 | 346 | 5.59e-19 | 85.9 |
MS.gene91301.t1 | MTR_1g067650 | 38.806 | 134 | 61 | 6 | 96 | 225 | 35 | 151 | 9.85e-16 | 73.6 |
MS.gene91301.t1 | MTR_1g067640 | 46.429 | 84 | 30 | 3 | 96 | 175 | 34 | 106 | 1.31e-15 | 73.2 |
MS.gene91301.t1 | MTR_7g023560 | 34.074 | 135 | 66 | 3 | 60 | 192 | 12 | 125 | 4.51e-15 | 72.0 |
MS.gene91301.t1 | MTR_5g099040 | 38.532 | 109 | 31 | 2 | 104 | 179 | 132 | 237 | 7.82e-15 | 73.2 |
MS.gene91301.t1 | MTR_7g100100 | 46.914 | 81 | 38 | 3 | 102 | 181 | 34 | 110 | 8.43e-15 | 70.9 |
MS.gene91301.t1 | MTR_5g062300 | 43.182 | 88 | 36 | 2 | 104 | 177 | 121 | 208 | 9.56e-15 | 72.4 |
MS.gene91301.t1 | MTR_1g115345 | 42.553 | 94 | 50 | 1 | 103 | 196 | 46 | 135 | 1.53e-14 | 71.2 |
MS.gene91301.t1 | MTR_1g090703 | 28.837 | 215 | 97 | 6 | 56 | 224 | 97 | 301 | 1.69e-14 | 73.2 |
MS.gene91301.t1 | MTR_1g062780 | 32.487 | 197 | 90 | 8 | 60 | 224 | 81 | 266 | 2.13e-14 | 72.0 |
MS.gene91301.t1 | MTR_4g100860 | 33.708 | 178 | 81 | 8 | 57 | 227 | 158 | 305 | 6.38e-14 | 70.9 |
MS.gene91301.t1 | MTR_1g067660 | 37.864 | 103 | 55 | 3 | 77 | 175 | 8 | 105 | 2.31e-13 | 67.0 |
MS.gene91301.t1 | MTR_4g109340 | 41.818 | 110 | 26 | 5 | 103 | 175 | 349 | 457 | 8.38e-13 | 68.6 |
MS.gene91301.t1 | MTR_2g096540 | 43.836 | 73 | 29 | 1 | 103 | 175 | 35 | 95 | 5.79e-12 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91301.t1 | AT1G27730 | 41.304 | 276 | 95 | 13 | 4 | 269 | 1 | 219 | 9.25e-46 | 154 |
MS.gene91301.t1 | AT3G19580 | 42.979 | 235 | 88 | 10 | 55 | 279 | 66 | 264 | 3.86e-43 | 148 |
MS.gene91301.t1 | AT3G19580 | 42.979 | 235 | 88 | 10 | 55 | 279 | 66 | 264 | 3.86e-43 | 148 |
MS.gene91301.t1 | AT3G49930 | 51.701 | 147 | 56 | 4 | 37 | 176 | 34 | 172 | 5.76e-38 | 133 |
MS.gene91301.t1 | AT5G67450 | 39.286 | 252 | 106 | 9 | 4 | 223 | 1 | 237 | 1.02e-37 | 134 |
MS.gene91301.t1 | AT5G04340 | 40.000 | 240 | 96 | 8 | 41 | 269 | 30 | 232 | 6.17e-37 | 131 |
MS.gene91301.t1 | AT5G43170 | 39.004 | 241 | 79 | 12 | 4 | 232 | 1 | 185 | 1.03e-29 | 111 |
MS.gene91301.t1 | AT3G60580 | 34.404 | 218 | 102 | 5 | 37 | 234 | 91 | 287 | 1.08e-25 | 103 |
MS.gene91301.t1 | AT2G45120 | 36.872 | 179 | 81 | 6 | 55 | 224 | 146 | 301 | 7.87e-24 | 98.6 |
MS.gene91301.t1 | AT1G49900 | 35.047 | 214 | 109 | 8 | 44 | 230 | 117 | 327 | 4.97e-22 | 96.3 |
MS.gene91301.t1 | AT1G49900 | 38.298 | 141 | 75 | 4 | 97 | 231 | 745 | 879 | 1.70e-21 | 94.7 |
MS.gene91301.t1 | AT1G02030 | 33.146 | 178 | 83 | 4 | 50 | 227 | 118 | 259 | 2.35e-20 | 88.2 |
MS.gene91301.t1 | AT2G28200 | 32.124 | 193 | 103 | 4 | 56 | 224 | 73 | 261 | 5.39e-20 | 87.8 |
MS.gene91301.t1 | AT5G03510 | 33.333 | 204 | 93 | 6 | 56 | 227 | 69 | 261 | 6.87e-19 | 84.7 |
MS.gene91301.t1 | AT5G56200 | 47.312 | 93 | 31 | 3 | 102 | 176 | 342 | 434 | 1.83e-17 | 82.4 |
MS.gene91301.t1 | AT2G37430 | 37.931 | 116 | 56 | 2 | 60 | 175 | 17 | 116 | 9.28e-17 | 76.6 |
MS.gene91301.t1 | AT3G53600 | 37.288 | 118 | 55 | 3 | 64 | 180 | 21 | 120 | 1.26e-16 | 76.3 |
MS.gene91301.t1 | AT2G17180 | 35.036 | 137 | 57 | 5 | 54 | 177 | 118 | 235 | 2.38e-16 | 77.4 |
MS.gene91301.t1 | AT1G02040 | 29.187 | 209 | 93 | 6 | 9 | 176 | 54 | 248 | 3.36e-16 | 77.8 |
MS.gene91301.t1 | AT5G04390 | 38.462 | 104 | 39 | 2 | 102 | 180 | 153 | 256 | 2.74e-15 | 75.5 |
MS.gene91301.t1 | AT4G35280 | 36.641 | 131 | 52 | 4 | 56 | 177 | 138 | 246 | 1.29e-14 | 72.8 |
MS.gene91301.t1 | AT2G28710 | 49.315 | 73 | 28 | 2 | 104 | 175 | 36 | 100 | 1.89e-14 | 69.7 |
MS.gene91301.t1 | AT3G10470 | 36.275 | 102 | 37 | 2 | 102 | 175 | 182 | 283 | 2.36e-14 | 72.8 |
MS.gene91301.t1 | AT5G61470 | 38.158 | 76 | 40 | 2 | 102 | 176 | 228 | 297 | 5.60e-12 | 65.5 |
MS.gene91301.t1 | AT3G46070 | 33.636 | 110 | 71 | 2 | 66 | 175 | 1 | 108 | 2.12e-11 | 61.6 |
MS.gene91301.t1 | AT3G46080 | 46.575 | 73 | 36 | 2 | 103 | 175 | 38 | 107 | 2.91e-11 | 61.2 |
MS.gene91301.t1 | AT5G59820 | 44.444 | 72 | 32 | 1 | 104 | 175 | 41 | 104 | 3.29e-11 | 60.8 |
MS.gene91301.t1 | AT3G46090 | 45.946 | 74 | 33 | 2 | 103 | 175 | 41 | 108 | 4.05e-11 | 60.8 |
Find 71 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACATTAATCTTGGTCTTCT+TGG | 0.185197 | 1.3:-73052817 | None:intergenic |
GGAACACTCGTGCATCTTTC+CGG | 0.244557 | 1.3:-73052547 | None:intergenic |
TACCTCTTGTTCATTGATTC+CGG | 0.301905 | 1.3:-73052847 | None:intergenic |
AATTCATGAACGTGACTCTT+TGG | 0.305289 | 1.3:+73052197 | MS.gene91301:CDS |
AACGGTGTCGTTGACGGTTG+TGG | 0.349088 | 1.3:-73052502 | None:intergenic |
GGCGAGATTAACATTAATCT+TGG | 0.353029 | 1.3:-73052826 | None:intergenic |
CGTTGCCGGTAACCGCTAAA+AGG | 0.357837 | 1.3:+73052877 | MS.gene91301:CDS |
TTCTGGTCTCCGGTTGGATT+CGG | 0.364389 | 1.3:+73052783 | MS.gene91301:CDS |
CAGCGCCTCTCACTGAATTC+TGG | 0.379619 | 1.3:+73052766 | MS.gene91301:CDS |
CGATCAAAACGACCGCGTAT+TGG | 0.397483 | 1.3:+73052231 | MS.gene91301:CDS |
AGAGGTAGAAAGTCCGTTGC+CGG | 0.419568 | 1.3:+73052863 | MS.gene91301:CDS |
TGATGACGATTTACGGTGGC+TGG | 0.428675 | 1.3:-73052466 | None:intergenic |
CCACCAAGTGCTTGATAAGA+TGG | 0.436761 | 1.3:-73052435 | None:intergenic |
AGGAAAACTCTTGTGACAAA+TGG | 0.437929 | 1.3:-73052568 | None:intergenic |
GCTTTGAATTCTTCTCCAAC+AGG | 0.439849 | 1.3:+73052123 | MS.gene91301:CDS |
TGATTCAGCTTCACCGGTGA+TGG | 0.447494 | 1.3:-73052384 | None:intergenic |
AGCAAGATATTCTTCTTCAG+TGG | 0.458967 | 1.3:-73052262 | None:intergenic |
CGTTTCATCATTGTCTTCAC+CGG | 0.478246 | 1.3:-73052913 | None:intergenic |
AACAGAAACGGTGTCGTTGA+CGG | 0.479133 | 1.3:-73052508 | None:intergenic |
CACTTGTGATTCAGCTTCAC+CGG | 0.486794 | 1.3:-73052390 | None:intergenic |
TGGTGTTTGAAGCGTGGGAA+TGG | 0.489183 | 1.3:-73052156 | None:intergenic |
CGTTGACGGTTGTGGATTGG+TGG | 0.490384 | 1.3:-73052494 | None:intergenic |
CCATCTTATCAAGCACTTGG+TGG | 0.494016 | 1.3:+73052435 | MS.gene91301:CDS |
GTCAAATCCACGGTGGCTGA+TGG | 0.494460 | 1.3:-73052733 | None:intergenic |
CTCGTGCATCTTTCCGGTGA+CGG | 0.496027 | 1.3:-73052541 | None:intergenic |
TTCCCATCTTATCAAGCACT+TGG | 0.496098 | 1.3:+73052432 | MS.gene91301:CDS |
TCTCCACCACCGAATCCAAC+CGG | 0.506094 | 1.3:-73052792 | None:intergenic |
ATCACAGTCTCCGACGGCGG+CGG | 0.508871 | 1.3:+73052699 | MS.gene91301:CDS |
TTTCCTACCGGTCAAGCTCT+CGG | 0.514138 | 1.3:+73052585 | MS.gene91301:CDS |
GGAGGACGCGCCGCCGCCGT+CGG | 0.514572 | 1.3:-73052709 | None:intergenic |
ACTGAATTCTGGTCTCCGGT+TGG | 0.515567 | 1.3:+73052777 | MS.gene91301:CDS |
GATATTCTTCTTCAGTGGGT+GGG | 0.515704 | 1.3:-73052257 | None:intergenic |
TCTCACTGAATTCTGGTCTC+CGG | 0.517672 | 1.3:+73052773 | MS.gene91301:CDS |
CAGAATTCAGTGAGAGGCGC+TGG | 0.519958 | 1.3:-73052765 | None:intergenic |
GTTTCCGTCTCAACCGTCAC+CGG | 0.524129 | 1.3:+73052528 | MS.gene91301:CDS |
TGTCGTTGACGGTTGTGGAT+TGG | 0.526945 | 1.3:-73052497 | None:intergenic |
TCTCCGGTTGGATTCGGTGG+TGG | 0.527155 | 1.3:+73052789 | MS.gene91301:CDS |
GTGTCCACCGAGAGCTTGAC+CGG | 0.527574 | 1.3:-73052592 | None:intergenic |
CGGTGAAGACAATGATGAAA+CGG | 0.533105 | 1.3:+73052914 | MS.gene91301:CDS |
AAGATTAATGTTAATCTCGC+CGG | 0.533608 | 1.3:+73052828 | MS.gene91301:CDS |
GTTGCAGTCGCCGCCATCAC+CGG | 0.540954 | 1.3:+73052371 | MS.gene91301:CDS |
TATTGATGACTCCTTCATAG+TGG | 0.543203 | 1.3:-73052623 | None:intergenic |
CACAAACGATGCCACTATGA+AGG | 0.543347 | 1.3:+73052612 | MS.gene91301:CDS |
TCCACGGTGGCTGATGGAGG+AGG | 0.543367 | 1.3:-73052727 | None:intergenic |
GTTGTTGGTGTTTGAAGCGT+GGG | 0.544969 | 1.3:-73052161 | None:intergenic |
AGATATTCTTCTTCAGTGGG+TGG | 0.545715 | 1.3:-73052258 | None:intergenic |
GGTTGAGACGGAAACAGAAA+CGG | 0.552561 | 1.3:-73052520 | None:intergenic |
CTTTCCGGTGACGGTTGAGA+CGG | 0.558965 | 1.3:-73052532 | None:intergenic |
TGGTCTCCGGTTGGATTCGG+TGG | 0.560623 | 1.3:+73052786 | MS.gene91301:CDS |
GGTGATGGCGGCGACTGCAA+CGG | 0.560799 | 1.3:-73052369 | None:intergenic |
GCAAGATATTCTTCTTCAGT+GGG | 0.562178 | 1.3:-73052261 | None:intergenic |
TGAGAGGCGCTGGTAAATTG+AGG | 0.568160 | 1.3:-73052755 | None:intergenic |
CACCAAGTGCTTGATAAGAT+GGG | 0.573814 | 1.3:-73052434 | None:intergenic |
TTCAGCTTCACCGGTGATGG+CGG | 0.589012 | 1.3:-73052381 | None:intergenic |
CGCCGGAATCAATGAACAAG+AGG | 0.596526 | 1.3:+73052845 | MS.gene91301:CDS |
AAATCCACGGTGGCTGATGG+AGG | 0.597416 | 1.3:-73052730 | None:intergenic |
AATGGAATAGTAGCTCCTGT+TGG | 0.598789 | 1.3:-73052138 | None:intergenic |
CAAAGCTTGTAACTCTAAAG+CGG | 0.606121 | 1.3:-73052106 | None:intergenic |
CCACCGAGAGCTTGACCGGT+AGG | 0.606411 | 1.3:-73052588 | None:intergenic |
AGCGGAATCACAGTCTCCGA+CGG | 0.609902 | 1.3:+73052693 | MS.gene91301:CDS |
TGTTGTTGGTGTTTGAAGCG+TGG | 0.617744 | 1.3:-73052162 | None:intergenic |
GGAATCACAGTCTCCGACGG+CGG | 0.629807 | 1.3:+73052696 | MS.gene91301:CDS |
TCCTCCTCCATCAGCCACCG+TGG | 0.642688 | 1.3:+73052726 | MS.gene91301:CDS |
GTAAATTGAGGTCAAATCCA+CGG | 0.651066 | 1.3:-73052743 | None:intergenic |
AGCAACGTCAATAACAGCAG+CGG | 0.671478 | 1.3:+73052675 | MS.gene91301:CDS |
CCTACCGGTCAAGCTCTCGG+TGG | 0.673339 | 1.3:+73052588 | MS.gene91301:CDS |
GGAGACCAGAATTCAGTGAG+AGG | 0.681730 | 1.3:-73052771 | None:intergenic |
TTTCTGATGACGATTTACGG+TGG | 0.728949 | 1.3:-73052470 | None:intergenic |
GTGGGTGGGTTACCAATACG+CGG | 0.746672 | 1.3:-73052243 | None:intergenic |
TCTTCACCGGAAAACAAACG+CGG | 0.774869 | 1.3:-73052900 | None:intergenic |
AATTGAGGTCAAATCCACGG+TGG | 0.794635 | 1.3:-73052740 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTCTTGATTTTCTTGTTGT+TGG | - | chr1.3:73052179-73052198 | None:intergenic | 25.0% |
AAGATTAATGTTAATCTCGC+CGG | + | chr1.3:73052828-73052847 | MS.gene91301:CDS | 30.0% | |
! | AACATTAATCTTGGTCTTCT+TGG | - | chr1.3:73052820-73052839 | None:intergenic | 30.0% |
AATTCATGAACGTGACTCTT+TGG | + | chr1.3:73052197-73052216 | MS.gene91301:CDS | 35.0% | |
AGCAAGATATTCTTCTTCAG+TGG | - | chr1.3:73052265-73052284 | None:intergenic | 35.0% | |
AGGAAAACTCTTGTGACAAA+TGG | - | chr1.3:73052571-73052590 | None:intergenic | 35.0% | |
GCAAGATATTCTTCTTCAGT+GGG | - | chr1.3:73052264-73052283 | None:intergenic | 35.0% | |
GGCGAGATTAACATTAATCT+TGG | - | chr1.3:73052829-73052848 | None:intergenic | 35.0% | |
GTAAATTGAGGTCAAATCCA+CGG | - | chr1.3:73052746-73052765 | None:intergenic | 35.0% | |
! | AGAGATGTTGATCTTTTCGT+TGG | - | chr1.3:73052319-73052338 | None:intergenic | 35.0% |
! | CAAAGCTTGTAACTCTAAAG+CGG | - | chr1.3:73052109-73052128 | None:intergenic | 35.0% |
! | TATTGATGACTCCTTCATAG+TGG | - | chr1.3:73052626-73052645 | None:intergenic | 35.0% |
!! | GGTTTTCTGATGACGATTTA+CGG | - | chr1.3:73052476-73052495 | None:intergenic | 35.0% |
!! | TACCTCTTGTTCATTGATTC+CGG | - | chr1.3:73052850-73052869 | None:intergenic | 35.0% |
AATGGAATAGTAGCTCCTGT+TGG | - | chr1.3:73052141-73052160 | None:intergenic | 40.0% | |
AGATATTCTTCTTCAGTGGG+TGG | - | chr1.3:73052261-73052280 | None:intergenic | 40.0% | |
CACCAAGTGCTTGATAAGAT+GGG | - | chr1.3:73052437-73052456 | None:intergenic | 40.0% | |
CGGTGAAGACAATGATGAAA+CGG | + | chr1.3:73052914-73052933 | MS.gene91301:CDS | 40.0% | |
CGTTTCATCATTGTCTTCAC+CGG | - | chr1.3:73052916-73052935 | None:intergenic | 40.0% | |
GATATTCTTCTTCAGTGGGT+GGG | - | chr1.3:73052260-73052279 | None:intergenic | 40.0% | |
TTCCCATCTTATCAAGCACT+TGG | + | chr1.3:73052432-73052451 | MS.gene91301:CDS | 40.0% | |
! | GCTTTGAATTCTTCTCCAAC+AGG | + | chr1.3:73052123-73052142 | MS.gene91301:CDS | 40.0% |
! | TGTCACAAGAGTTTTCCTAC+CGG | + | chr1.3:73052573-73052592 | MS.gene91301:CDS | 40.0% |
! | TTTCTGATGACGATTTACGG+TGG | - | chr1.3:73052473-73052492 | None:intergenic | 40.0% |
AATTGAGGTCAAATCCACGG+TGG | - | chr1.3:73052743-73052762 | None:intergenic | 45.0% | |
AGCAACGTCAATAACAGCAG+CGG | + | chr1.3:73052675-73052694 | MS.gene91301:CDS | 45.0% | |
CACAAACGATGCCACTATGA+AGG | + | chr1.3:73052612-73052631 | MS.gene91301:CDS | 45.0% | |
CACTTGTGATTCAGCTTCAC+CGG | - | chr1.3:73052393-73052412 | None:intergenic | 45.0% | |
CCACCAAGTGCTTGATAAGA+TGG | - | chr1.3:73052438-73052457 | None:intergenic | 45.0% | |
CCATCTTATCAAGCACTTGG+TGG | + | chr1.3:73052435-73052454 | MS.gene91301:CDS | 45.0% | |
GGTTGAGACGGAAACAGAAA+CGG | - | chr1.3:73052523-73052542 | None:intergenic | 45.0% | |
TCTCACTGAATTCTGGTCTC+CGG | + | chr1.3:73052773-73052792 | MS.gene91301:CDS | 45.0% | |
TCTTCACCGGAAAACAAACG+CGG | - | chr1.3:73052903-73052922 | None:intergenic | 45.0% | |
! | AAACAAACGCGGCCTTTTAG+CGG | - | chr1.3:73052892-73052911 | None:intergenic | 45.0% |
! | GTTGTTGGTGTTTGAAGCGT+GGG | - | chr1.3:73052164-73052183 | None:intergenic | 45.0% |
! | TGTTGTTGGTGTTTGAAGCG+TGG | - | chr1.3:73052165-73052184 | None:intergenic | 45.0% |
!! | AAAAGGCCGCGTTTGTTTTC+CGG | + | chr1.3:73052894-73052913 | MS.gene91301:CDS | 45.0% |
!! | AACAGAAACGGTGTCGTTGA+CGG | - | chr1.3:73052511-73052530 | None:intergenic | 45.0% |
ACTGAATTCTGGTCTCCGGT+TGG | + | chr1.3:73052777-73052796 | MS.gene91301:CDS | 50.0% | |
AGAGGTAGAAAGTCCGTTGC+CGG | + | chr1.3:73052863-73052882 | MS.gene91301:CDS | 50.0% | |
CGATCAAAACGACCGCGTAT+TGG | + | chr1.3:73052231-73052250 | MS.gene91301:CDS | 50.0% | |
CGCCGGAATCAATGAACAAG+AGG | + | chr1.3:73052845-73052864 | MS.gene91301:CDS | 50.0% | |
GGAACACTCGTGCATCTTTC+CGG | - | chr1.3:73052550-73052569 | None:intergenic | 50.0% | |
GGAGACCAGAATTCAGTGAG+AGG | - | chr1.3:73052774-73052793 | None:intergenic | 50.0% | |
TGATTCAGCTTCACCGGTGA+TGG | - | chr1.3:73052387-73052406 | None:intergenic | 50.0% | |
TGTCGTTGACGGTTGTGGAT+TGG | - | chr1.3:73052500-73052519 | None:intergenic | 50.0% | |
TTCTGGTCTCCGGTTGGATT+CGG | + | chr1.3:73052783-73052802 | MS.gene91301:CDS | 50.0% | |
TTTCCTACCGGTCAAGCTCT+CGG | + | chr1.3:73052585-73052604 | MS.gene91301:CDS | 50.0% | |
! | CTTTTAGCGGTTACCGGCAA+CGG | - | chr1.3:73052879-73052898 | None:intergenic | 50.0% |
! | TGATGACGATTTACGGTGGC+TGG | - | chr1.3:73052469-73052488 | None:intergenic | 50.0% |
! | TGGTGTTTGAAGCGTGGGAA+TGG | - | chr1.3:73052159-73052178 | None:intergenic | 50.0% |
!! | TGAGAGGCGCTGGTAAATTG+AGG | - | chr1.3:73052758-73052777 | None:intergenic | 50.0% |
AAATCCACGGTGGCTGATGG+AGG | - | chr1.3:73052733-73052752 | None:intergenic | 55.0% | |
AGCGGAATCACAGTCTCCGA+CGG | + | chr1.3:73052693-73052712 | MS.gene91301:CDS | 55.0% | |
CAGCGCCTCTCACTGAATTC+TGG | + | chr1.3:73052766-73052785 | MS.gene91301:CDS | 55.0% | |
CGTTGCCGGTAACCGCTAAA+AGG | + | chr1.3:73052877-73052896 | MS.gene91301:CDS | 55.0% | |
CTCGTGCATCTTTCCGGTGA+CGG | - | chr1.3:73052544-73052563 | None:intergenic | 55.0% | |
GTCAAATCCACGGTGGCTGA+TGG | - | chr1.3:73052736-73052755 | None:intergenic | 55.0% | |
GTTTCCGTCTCAACCGTCAC+CGG | + | chr1.3:73052528-73052547 | MS.gene91301:CDS | 55.0% | |
TCTCCACCACCGAATCCAAC+CGG | - | chr1.3:73052795-73052814 | None:intergenic | 55.0% | |
! | CAGAATTCAGTGAGAGGCGC+TGG | - | chr1.3:73052768-73052787 | None:intergenic | 55.0% |
! | CTTTCCGGTGACGGTTGAGA+CGG | - | chr1.3:73052535-73052554 | None:intergenic | 55.0% |
! | TTCAGCTTCACCGGTGATGG+CGG | - | chr1.3:73052384-73052403 | None:intergenic | 55.0% |
!! | AACGGTGTCGTTGACGGTTG+TGG | - | chr1.3:73052505-73052524 | None:intergenic | 55.0% |
!! | CGTTGACGGTTGTGGATTGG+TGG | - | chr1.3:73052497-73052516 | None:intergenic | 55.0% |
!! | GTGGGTGGGTTACCAATACG+CGG | - | chr1.3:73052246-73052265 | None:intergenic | 55.0% |
GGAATCACAGTCTCCGACGG+CGG | + | chr1.3:73052696-73052715 | MS.gene91301:CDS | 60.0% | |
GTGTCCACCGAGAGCTTGAC+CGG | - | chr1.3:73052595-73052614 | None:intergenic | 60.0% | |
TGGTCTCCGGTTGGATTCGG+TGG | + | chr1.3:73052786-73052805 | MS.gene91301:CDS | 60.0% | |
! | CGCGGCCTTTTAGCGGTTAC+CGG | - | chr1.3:73052885-73052904 | None:intergenic | 60.0% |
!! | TCTCCGGTTGGATTCGGTGG+TGG | + | chr1.3:73052789-73052808 | MS.gene91301:CDS | 60.0% |
ATCACAGTCTCCGACGGCGG+CGG | + | chr1.3:73052699-73052718 | MS.gene91301:CDS | 65.0% | |
CCACCGAGAGCTTGACCGGT+AGG | - | chr1.3:73052591-73052610 | None:intergenic | 65.0% | |
CCTACCGGTCAAGCTCTCGG+TGG | + | chr1.3:73052588-73052607 | MS.gene91301:CDS | 65.0% | |
GTTGCAGTCGCCGCCATCAC+CGG | + | chr1.3:73052371-73052390 | MS.gene91301:CDS | 65.0% | |
TCCACGGTGGCTGATGGAGG+AGG | - | chr1.3:73052730-73052749 | None:intergenic | 65.0% | |
TCCTCCTCCATCAGCCACCG+TGG | + | chr1.3:73052726-73052745 | MS.gene91301:CDS | 65.0% | |
!! | GGTGATGGCGGCGACTGCAA+CGG | - | chr1.3:73052372-73052391 | None:intergenic | 65.0% |
! | GGAGGACGCGCCGCCGCCGT+CGG | - | chr1.3:73052712-73052731 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 73052102 | 73052941 | 73052102 | ID=MS.gene91301 |
chr1.3 | mRNA | 73052102 | 73052941 | 73052102 | ID=MS.gene91301.t1;Parent=MS.gene91301 |
chr1.3 | exon | 73052102 | 73052941 | 73052102 | ID=MS.gene91301.t1.exon1;Parent=MS.gene91301.t1 |
chr1.3 | CDS | 73052102 | 73052941 | 73052102 | ID=cds.MS.gene91301.t1;Parent=MS.gene91301.t1 |
Gene Sequence |
Protein sequence |