AlfalfaGEDB | MS.gene91538

M. sativa cultivar XinJiangDaYe / MS.gene91538

KEGG: K17426
GO: -
PFAM: PF04280.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91538.t1	XP_003591058.1	93.3	297	8	2	1	288	1	294	5.50E-149	537

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91538.t1	G7I7H3	93.3	297	8	2	1	288	1	294	4.0e-149	537.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene91538	0.822065	2.89E-53	-1.69E-46
MS.gene049825	MS.gene91538	0.80203	6.81E-49	-1.69E-46
MS.gene055808	MS.gene91538	0.869108	3.96E-66	-1.69E-46
MS.gene056091	MS.gene91538	0.85506	8.13E-62	-1.69E-46
MS.gene056403	MS.gene91538	0.815213	1.04E-51	-1.69E-46
MS.gene056605	MS.gene91538	0.809661	1.69E-50	-1.69E-46
MS.gene05689	MS.gene91538	0.818002	2.46E-52	-1.69E-46
MS.gene05954	MS.gene91538	0.80068	1.29E-48	-1.69E-46
MS.gene060830	MS.gene91538	0.8075	4.90E-50	-1.69E-46

Showing 1 to 9 of 9 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91538.t1	MTR_1g082380	93.266	297	8	2	1	288	1	294	0.0	561
MS.gene91538.t1	MTR_1g082380	92.308	247	7	2	1	238	1	244	3.34e-165	458

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91538.t1	AT5G27395	53.199	297	122	5	1	283	1	294	4.36e-106	310
MS.gene91538.t1	AT5G27395	60.417	240	92	2	45	283	74	311	3.62e-105	309

Showing 1 to 2 of 2 entries

Previous1Next

Find 49 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCCTATACCATTGCA+AGG	0.627691	1.2:+60564097	MS.gene91538:CDS
AAAGAAACAGTTCTATCTAG+AGG	0.590191	1.2:+60564140	MS.gene91538:CDS
AAAGACGCCAGTATGATCTA+GGG	0.622028	1.2:-60567185	None:intergenic
AACGAAAAGCGACTTAATGA+TGG	0.516876	1.2:+60563759	MS.gene91538:CDS
AAGAGAAACTACATGGAGCA+AGG	0.613968	1.2:+60565583	MS.gene91538:CDS
ACAATATTCATCCCATCTTC+TGG	0.358168	1.2:+60561523	MS.gene91538:CDS
ACGAACTCTGCGTGCTCGTA+TGG	0.416956	1.2:+60565640	MS.gene91538:CDS
AGAAGATGGGATGAATATTG+TGG	0.692349	1.2:-60561521	None:intergenic
AGAAGCGTTTGATAAAACAT+TGG	0.580099	1.2:-60561564	None:intergenic
AGAGGCTATCAGTATGTACA+AGG	0.607682	1.2:+60564158	MS.gene91538:CDS

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCGCAATTGAAGTGA+AGG	+	chr1.2:60562815-60562834	MS.gene91538:intron	30.0%
AAAGAAACAGTTCTATCTAG+AGG	+	chr1.2:60564140-60564159	MS.gene91538:CDS	30.0%
AAATTCGCAATTGAAGTGAA+GGG	+	chr1.2:60562816-60562835	MS.gene91538:intron	30.0%
AACTTTATAAGTATGCATCC+TGG	+	chr1.2:60563673-60563692	MS.gene91538:intron	30.0%
AATTTAAGAGAACCTACCAT+AGG	-	chr1.2:60561808-60561827	None:intergenic	30.0%
ACAGTTCATAGCTACAATTA+AGG	+	chr1.2:60562898-60562917	MS.gene91538:intron	30.0%
ACTTATTTGAGCTTATCTAC+GGG	+	chr1.2:60561884-60561903	MS.gene91538:intron	30.0%
AGCAAATCTCTGTAATCAAA+AGG	-	chr1.2:60565205-60565224	None:intergenic	30.0%
AGGCTGATAATATGTTCAAA+TGG	-	chr1.2:60565102-60565121	None:intergenic	30.0%
ATACTTGGTCTGCAAATAAA+CGG	-	chr1.2:60563245-60563264	None:intergenic	30.0%

Showing 1 to 10 of 375 entries

Previous1 2 3 4 5…38Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	60561464	60567236	60561464	ID=MS.gene91538
chr1.2	mRNA	60561464	60567236	60561464	ID=MS.gene91538.t1;Parent=MS.gene91538
chr1.2	exon	60561464	60561628	60561464	ID=MS.gene91538.t1.exon1;Parent=MS.gene91538.t1
chr1.2	CDS	60561464	60561628	60561464	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60561724	60561810	60561724	ID=MS.gene91538.t1.exon2;Parent=MS.gene91538.t1
chr1.2	CDS	60561724	60561810	60561724	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60563301	60563380	60563301	ID=MS.gene91538.t1.exon3;Parent=MS.gene91538.t1
chr1.2	CDS	60563301	60563380	60563301	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60563732	60563783	60563732	ID=MS.gene91538.t1.exon4;Parent=MS.gene91538.t1
chr1.2	CDS	60563732	60563783	60563732	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60564093	60564182	60564093	ID=MS.gene91538.t1.exon5;Parent=MS.gene91538.t1
chr1.2	CDS	60564093	60564182	60564093	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60565382	60565450	60565382	ID=MS.gene91538.t1.exon6;Parent=MS.gene91538.t1
chr1.2	CDS	60565382	60565450	60565382	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60565560	60565661	60565560	ID=MS.gene91538.t1.exon7;Parent=MS.gene91538.t1
chr1.2	CDS	60565560	60565661	60565560	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60566236	60566304	60566236	ID=MS.gene91538.t1.exon8;Parent=MS.gene91538.t1
chr1.2	CDS	60566236	60566304	60566236	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60566418	60566474	60566418	ID=MS.gene91538.t1.exon9;Parent=MS.gene91538.t1
chr1.2	CDS	60566418	60566474	60566418	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1
chr1.2	exon	60567141	60567236	60567141	ID=MS.gene91538.t1.exon10;Parent=MS.gene91538.t1
chr1.2	CDS	60567141	60567236	60567141	ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1

Gene Sequence

>MS.gene91538

ATGTCATTGAAACGCTTACAATTAGCTCGCAATCTCTATCATTCTTCTCAGATTCAACCACAATATTCATCCCATCTTCTGGGTAGCTGCAGAAACTATTCCAATGTTTTATCAAACGCTTCTGATTTCGCTAATGTTAAAACTTTGACATTTCGATCTACAATGGTAATTCATTTGTATCAAGATTCAAATTATGATTTTTTTTGCTTTTGGGGTTTTGGGTTTATGATTTCTGTGTTTGTTGTCAATGTCTTTCTTAGGCTGCGGAGTTTTCCATTTTCATGAATGATAGAAAGATGTCAACTAGTGCAGTGAAAGTCAGACCTAATGCACAAGTCCGCCCTATGGTAGGTTCTCTTAAATTTCTTCTCTTTCTTTTATTATAATCATCCAACTGTGCTGTATGGTCTAATTGGATTGACTTATTTGAGCTTATCTACGGGCACAACCTTTAAGATAATTTATGAAAACAACTTTTGATGGGACTTTATGATATCTTGTGTTATTCATTAGAGCTTATACAATAAGAGATTATTGTTTAACCTGCAACATAAGTTGTTTATCCAAACAGGGACATGGTAGATTATGTATGTTACACCCAATTTGTAGTTATTGTATTGGATTAATGAAATTTACAAGGATGACTTTTGTTGTGTGGAGGATGGTACATGTTTCTCTTCCGAGCTTTGCTCGTCTATTTTTTTAGGTTTAAGTTCTTACTAGTTATGGTTTAAGGAGATATTAAAGGAAAAGTTTTTTTTGACAATATATTAAAGGAAAAGTTGTGATGTTTTCAATTAATTTATGACTACCAATTGTTGGAAAATTAGCAGAGATACCCAAAATCATAGATAAAATATATGAAATATTATTTAACGGAGATGTTTAGTATTTAGTAATGTGTACCTGTCATGTTTGTTAGTGTTCGTAGTCGTCTTGGAGAAGAAAGAGCATGAAAGGATTGCCGCCCTCTATCTGGAAAAGGTGGTGGCTAGAGTTTCTTTGACCTGATGGGATAGTCAGAATATAAATTCGAATGGTAGAGACCTCTCAACAGGCTAACCAATTGAACAACCCAACACATCACGAGCCATTCATATAACACAATTTACACAACAATATTCATTTATTTATAATTTAGTGCATTATTATAATTAGAATTTTATAGTTGATATTGTGATTTATTATTTTAATCATTGATTAAGGTTATCCAAGTGGAAGAATTGCTCGATTTATATCTCATTATCTCCCACTTATGCCCTTCTTGTATTCTATATTCATATACCAATTATTTTGTTGGTATATTTGAATTGATTTACTGGATTTATCATCTCATGTTTCCTTTCTGTTCAAAATTCGCAATTGAAGTGAAGGGTTTCTTCAAAAGGCGTTTATTTTACTCTTCAATTAGAGGAAGAGTGGAACCCAAGACACACAGTTCATAGCTACAATTAAGGCATCAAAATTTTGTTTAACATTCTAATATTCTCAAACTTTTTTAAAATATTAATAGCATACTAGCGTTTTAAATGACAGACCACATGAGCAGCCTTTGTCTTTTCAATGGATGGTAAAGTGGATATGCTAGATGTAAGTACATGCACGATATATGTTGTGTGTGTTGTGCTCTAAAGTTGAAAACAGTTTTCCAGAGTTAATGATTTAGATGGACTTTAGGTAACCCTCTTATGTAACAATTGTTTTTCCATTATAATATTCTTTAATAGATATAAGATAAAATAAAACAAATAAAATCAATCTAGGTTGCTGCCTATAATCCGTTTATTTGCAGACCAAGTATTAATTTTCATGCCTTACTGACATATCATTATTTCAGGGAGCACAGATTTGCCTGTCAAGTCCAGGAATTATCTATGAACCTTACGAACCTCGTGAGAAAATCCCATTTTGGAAAAGGTTAGGTTGCAATGGTTTTGTATCTCCATTGCTTTAGCTTCTTATCTCTATTATACTTTTCTTCTTCTAAGTAGCCTAAAAAGAAATAAAAAATACTCCCATATATTGTTATACATGATTCTTTTCTCTGAAATTTAAGTTTTCATATCTTTTTGTGGGATTTATTTTAACATGAAAGCAGTTTCTGTGATGTTGCATCTACGTAGAATTATTTACATATTTTCTAAGTATTATCTTTCACCGATTTGATGTGTCTTCAAGGCTTGTATAGCACTGCAGCTACATATATTATAACTTTATAAGTATGCATCCTGGTCTTCTCTATAATTTCTATGATGTTTCATATATCAGGATGTTCACTAGAAGTGGTTGGGAAAGAACGAAAAGCGACTTAATGATGGAGGTAACGATGCATATAACTTCTGTTACTTTCTGTTTGCACTATCTCCCAATTTTGAAACCTAACTATGTCTATGTAATAACTTCTATTAATCCAATATTTTATCTCCCACTCCCTTTTTATTTGCCCCCAATCTTGGAGAATTGCAGCATAGTGTTTTTCTAAATAGTATTATTTTATTACAGAAAATAAAATAATAATGAAATTAAAGTCGTGCAGAAAGTACTGAATACTGGACAATAGGCAGTGGCCCTTTCTTCTATGGATGTTATTCGTTGCCTGAATCAAATTTTGCTTTTTGCTCTGCTACAGGTCAAAAATGCCTATACCATTGCAAGGTTAAGAAAAACAGGATATTCAAAGAAACAGTTCTATCTAGAGGCTATCAGTATGTACAAGGAGGTATATAACCGTTAAATTTTGTATTCCATACCAAGCTTTATTTTTTGACTCATTATGCCAACAACAAACAACAACTAAAGCCTCTTTTCACTAGATGAGGTGTGTTGCACAAATCAAACAATGTCATTGTGTCTTGTCTACAACTCATTCTTCCATATATTAATAATAATTTACTGGTTTCCTGTTACTAATTTACGCTATTAATTAGAAAATTAACGAGGACAACATTATTGAAATCAAAACTAGGGAACCAAAATCAACCTTGTTTAAAACCAGAAGGATACATCAAATCAAACTTTATAAGTATGCACCCATTAGGTGAGGTCAGCTACAATCAATAAACTACATGGTGTTGTCCCAAAAGATAGACCATTTATTTACCTCTAGATTTGAAACTAGAGGAATCGAAATTTTATTAATTTAATTTGGGCTCAAATGCACATTTGGTCTCCCCTATTTTAAAAAAAAATTATGTTTTGGTCCCCCTATTTTAAAAATCGGTTTTTTTGGTCCCCGTATTTTACTTTTTTTTTTTTTTTTAATTTTGGTCCTTCGTCTCATTTTTGGGTCATTTTTTATGATGTGACCTATTCATTTATGACGTGACAATGCTTATTAGACCACACTAATATCCATGTTAGCAAAAATGTGTCTAATAAGCGGTGTCACGTCATAAATGAATAAGTCACGTGAGAAAAAAGTGACCTAAAAATGAGACAAGGGACCAAAATTCTGAAAAAAAGTAAAATAGGGGGACCAAACCAACATTTTTATGAAAATAGGGGGGCCAAAAGTGCATTTAAAGCCTTTAATTTTCTATTAAATATAATTTTTTTCCTAAAAGATGCAGTTTTGAAACATTCAAACTCCTTTGTGGTCTGTTTATTGCTATATAGTGATGAATTCAAATCCTTAGCCATTTGAACATATTATCAGCCTGATGAAGCAGATACATAAATGGCATTTTATTGTTTGTTCAGTAAACAAATTTACTTAATAAATTTTGTGGCTCTGCCACACCTTTTGATTACAGAGATTTGCTTCATTTTGTTTCTTTGGCAGAAGAGCTGTTTTTTAATTCTTTATAGGTTCATGTATTTTTAACCACTAGGACAATTTATCATGATTGGTTCTTGCTGGTTTCCTTCGTTTGCCTCTTTTGTTGGCTCCATGATAAAATTTCCTTTCCTTTTCTGCAGATAAACACACTTATAGCTAATGGTGACAAACACTCATTAAGGAAAGCAGTTACTGAGAAGATGTTTTCCGTATGGCTCGCTTCCTTTTTGTGATTTTATCCAGTGTGTATTATTTTTGCGAAGTCACAGCTATGTACATTTTTCATCCATAATTATCAGAGTTTTGTTTAATTTACAGACACTTAAGAATGAAATTAAAGTAAGAGAAACTACATGGAGCAAGGTTTATTGGGAAATGGTTGAGCCCGTTGTTTTGATACGAACTCTGCGTGCTCGTATGGTTAGCATTCTTCACTTTACTGTGCTTTATTTGATATTTTAGTCAAGATGATGTTGAAATTCCAAATGTGTATATGAAATACGAGAAAGAAGACCTGCTTATGCTGCATTGTCTCAACTTGCTATCCGTGAGACACCATCAAAACCTGGTCCGATTGGATTGAGTAGTATCATTAGCTTTGCTAGGGCCATAGGGTCTATTTTTGGAGGTTTTTACAACTAAATTTTTTGAAGTTAATCTCATATGGTCTATTTCTAAGATTCTTTTTCAAAGTTTCTGCTGCGCAGAACCTTTCTGGGATACATATTTAATATAATTGTGATTCGATGTAATTTTTATTTTCTTGTTTGAACCATGATGATGATCCTATATAATATGAATTGGCTAGATCTTGTTGGTATGCATGCCTATGTAACCTGTTAGGCCTATCCAGAAGAGCAGATACACATATGACACTGAGTTGTACTCATGTATGTAACATACAGACATGCACACATGCCACATTACATAATTTGAAAATATTATATATATTTTTCTATATTATTGTTTTATGGAGATTTCTTTGTCTTTGCAGCTTGGTGTTGACAAAAGTGACACGAATAAAGTATTTTATCAGATTACCCTTGAGATTTTGGCTAAACATGTATGCTTTACACGTTAAAATTGGTCTCATTACTGAAAATTTATATCCTTGGTGTCATGAGTACTGGGACTTCAACAACTTAGGACAGTGAATTGATGTTTTATTCCTTGCAGAAATTTGAAGCATATGACTCAAAAGGTTCTGTTGTCGCTGGAGATAAAAACAAGGAGGTAAATTGCTTTGCCTACATCCTTGTAGTGTGTGTCTCTGGATATTCATTTTCTCTTCGTTTTTTTCTTCTGCCAATTAGCATAATGCATTAGATCATCAATGAAACGATAATATGTTCTTTCTTTGTCTCATATAGTAGACGGGATAGAATTAGGAATGACACCATTAGAGAGAGTTGGGGTAGTAACTGCAGTAGAAAAGATGGTAGAAAATAGGCTTAGGTGGTTTGGCATGTAGAGAGAAGACCAGTATGTAGTATGAAGAGTAGATCAGATGGAGGAGAGTCGGATCAGAAGAGGTAGAGAAAGACCTAGAGAAACTATTATGAAAGATTTAGAGGCTAATGAGTTAGATTCAAATATGGTTTATGATCGAACATTATGGCTATAATTTGATCCATGTAGTCGAACCCACTTAGTGGGATAAGGCTTCGTTGTTGTTTGTCTCATATTTTCTTCCACAATTATTCTATGAAATAGAACAATTTATATTTAATTTCTTGTGGCATGAATTATGTGGGAGCATGGGGCCATAGCAAAGGGAACTTGATAGTTGATACAGTGGGTGCATGCATAAGTTTCCATTTCTTTACCACCAATATAAATTATTTTCTCAACCTCAGTGTCCTACCCTTTATTCAAGTACTGGTTTCCTATATTTTCCAGGTTCTTGTCCGTGATATATGGATATTTGAGAAGGCTTCGTTTCTCCCTAGATCATACTGGCGTCTTTGTGGACGGATATCTCCAAAAGCATCGTAG

Protein sequence

>MS.gene91538.t1

MSLKRLQLARNLYHSSQIQPQYSSHLLGSCRNYSNVLSNASDFANVKTLTFRSTMAAEFSIFMNDRKMSTSAVKVRPNAQVRPMGAQICLSSPGIIYEPYEPREKIPFWKRMFTRSGWERTKSDLMMEVKNAYTIARLRKTGYSKKQFYLEAISMYKEINTLIANGDKHSLRKAVTEKMFSTLKNEIKVRETTWSKVYWEMVEPVVLIRTLRARMLGVDKSDTNKVFYQITLEILAKHKFEAYDSKGSVVAGDKNKEVLVRDIWIFEKASFLPRSYWRLCGRISPKAS