Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91538.t1 | XP_003591058.1 | 93.3 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 5.50E-149 | 537 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91538.t1 | G7I7H3 | 93.3 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 4.0e-149 | 537.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene91538 | 0.822065 | 2.89E-53 | -1.69E-46 |
| MS.gene049825 | MS.gene91538 | 0.80203 | 6.81E-49 | -1.69E-46 |
| MS.gene055808 | MS.gene91538 | 0.869108 | 3.96E-66 | -1.69E-46 |
| MS.gene056091 | MS.gene91538 | 0.85506 | 8.13E-62 | -1.69E-46 |
| MS.gene056403 | MS.gene91538 | 0.815213 | 1.04E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene91538 | 0.809661 | 1.69E-50 | -1.69E-46 |
| MS.gene05689 | MS.gene91538 | 0.818002 | 2.46E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene91538 | 0.80068 | 1.29E-48 | -1.69E-46 |
| MS.gene060830 | MS.gene91538 | 0.8075 | 4.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91538.t1 | MTR_1g082380 | 93.266 | 297 | 8 | 2 | 1 | 288 | 1 | 294 | 0.0 | 561 |
| MS.gene91538.t1 | MTR_1g082380 | 92.308 | 247 | 7 | 2 | 1 | 238 | 1 | 244 | 3.34e-165 | 458 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91538.t1 | AT5G27395 | 53.199 | 297 | 122 | 5 | 1 | 283 | 1 | 294 | 4.36e-106 | 310 |
| MS.gene91538.t1 | AT5G27395 | 60.417 | 240 | 92 | 2 | 45 | 283 | 74 | 311 | 3.62e-105 | 309 |
Find 49 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGATTACCCTTGAGATTT+TGG | 0.137011 | 1.2:+60566274 | MS.gene91538:CDS |
| CTTTCTATCATTCATGAAAA+TGG | 0.162993 | 1.2:-60561737 | None:intergenic |
| CTACATGGAGCAAGGTTTAT+TGG | 0.243157 | 1.2:+60565591 | MS.gene91538:CDS |
| AGGTTCTTGTCCGTGATATA+TGG | 0.262057 | 1.2:+60567139 | MS.gene91538:intron |
| TGAGATAACTACGATGCTTT+TGG | 0.269544 | 1.2:-60567222 | None:intergenic |
| TCTTAACCTTGCAATGGTAT+AGG | 0.312912 | 1.2:-60564103 | None:intergenic |
| TACATGGAGCAAGGTTTATT+GGG | 0.326398 | 1.2:+60565592 | MS.gene91538:CDS |
| TAAGGTTCATAGATAATTCC+TGG | 0.354644 | 1.2:-60563325 | None:intergenic |
| ACAATATTCATCCCATCTTC+TGG | 0.358168 | 1.2:+60561523 | MS.gene91538:CDS |
| ATAGGGCGGACTTGTGCATT+AGG | 0.363063 | 1.2:-60561787 | None:intergenic |
| CTCGTGAGAAAATCCCATTT+TGG | 0.371900 | 1.2:+60563353 | MS.gene91538:CDS |
| CAAAGACGCCAGTATGATCT+AGG | 0.373303 | 1.2:-60567186 | None:intergenic |
| ACGAACTCTGCGTGCTCGTA+TGG | 0.416956 | 1.2:+60565640 | MS.gene91538:CDS |
| CGTTTCTCCCTAGATCATAC+TGG | 0.420505 | 1.2:+60567178 | MS.gene91538:CDS |
| GAGCAAGGTTTATTGGGAAA+TGG | 0.425014 | 1.2:+60565598 | MS.gene91538:CDS |
| TTTGAAGCATATGACTCAAA+AGG | 0.457081 | 1.2:+60566421 | MS.gene91538:CDS |
| AGATCATACTGGCGTCTTTG+TGG | 0.460552 | 1.2:+60567189 | MS.gene91538:CDS |
| ATAAACACACTTATAGCTAA+TGG | 0.463177 | 1.2:+60565382 | MS.gene91538:CDS |
| CAATATTCATCCCATCTTCT+GGG | 0.465219 | 1.2:+60561524 | MS.gene91538:CDS |
| TTCTGCAGCTACCCAGAAGA+TGG | 0.468511 | 1.2:-60561535 | None:intergenic |
| ATGGTGACAAACACTCATTA+AGG | 0.473691 | 1.2:+60565401 | MS.gene91538:CDS |
| AGAGTTCGTATCAAAACAAC+GGG | 0.491166 | 1.2:-60565626 | None:intergenic |
| GATGTTCACTAGAAGTGGTT+GGG | 0.506017 | 1.2:+60563732 | MS.gene91538:CDS |
| AGATAATTCCTGGACTTGAC+AGG | 0.515119 | 1.2:-60563315 | None:intergenic |
| TCAAAAGGTTCTGTTGTCGC+TGG | 0.516079 | 1.2:+60566436 | MS.gene91538:CDS |
| AACGAAAAGCGACTTAATGA+TGG | 0.516876 | 1.2:+60563759 | MS.gene91538:CDS |
| CAGATTTGCCTGTCAAGTCC+AGG | 0.517112 | 1.2:+60563307 | MS.gene91538:CDS |
| CATGTTTAGCCAAAATCTCA+AGG | 0.543474 | 1.2:-60566283 | None:intergenic |
| GGATGTTCACTAGAAGTGGT+TGG | 0.545253 | 1.2:+60563731 | MS.gene91538:intron |
| TAATGCACAAGTCCGCCCTA+TGG | 0.550378 | 1.2:+60561789 | MS.gene91538:CDS |
| ATCAGGATGTTCACTAGAAG+TGG | 0.562937 | 1.2:+60563727 | MS.gene91538:intron |
| TTTGACATTTCGATCTACAA+TGG | 0.565734 | 1.2:+60561607 | MS.gene91538:CDS |
| AGAAGCGTTTGATAAAACAT+TGG | 0.580099 | 1.2:-60561564 | None:intergenic |
| TGATATATGGATATTTGAGA+AGG | 0.584780 | 1.2:+60567152 | MS.gene91538:CDS |
| AAAGAAACAGTTCTATCTAG+AGG | 0.590191 | 1.2:+60564140 | MS.gene91538:CDS |
| TCTGCAGCTACCCAGAAGAT+GGG | 0.592557 | 1.2:-60561534 | None:intergenic |
| AGAGGCTATCAGTATGTACA+AGG | 0.607682 | 1.2:+60564158 | MS.gene91538:CDS |
| CATACTGGCGTCTTTGTGGA+CGG | 0.608607 | 1.2:+60567193 | MS.gene91538:CDS |
| TTAAAGTAAGAGAAACTACA+TGG | 0.609989 | 1.2:+60565576 | MS.gene91538:CDS |
| AAGAGAAACTACATGGAGCA+AGG | 0.613968 | 1.2:+60565583 | MS.gene91538:CDS |
| TCTCAAATATCCATATATCA+CGG | 0.619706 | 1.2:-60567149 | None:intergenic |
| AAAGACGCCAGTATGATCTA+GGG | 0.622028 | 1.2:-60567185 | None:intergenic |
| AAAATGCCTATACCATTGCA+AGG | 0.627691 | 1.2:+60564097 | MS.gene91538:CDS |
| ATGTTTAGCCAAAATCTCAA+GGG | 0.653343 | 1.2:-60566282 | None:intergenic |
| CAGAGTTCGTATCAAAACAA+CGG | 0.673005 | 1.2:-60565627 | None:intergenic |
| GAAAAGCGACTTAATGATGG+AGG | 0.681182 | 1.2:+60563762 | MS.gene91538:CDS |
| AGAAGATGGGATGAATATTG+TGG | 0.692349 | 1.2:-60561521 | None:intergenic |
| GGCTATCAGTATGTACAAGG+AGG | 0.702267 | 1.2:+60564161 | MS.gene91538:CDS |
| TAAGAGAACCTACCATAGGG+CGG | 0.722190 | 1.2:-60561801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATTAATTTAATTT+GGG | + | chr1.2:60564590-60564609 | MS.gene91538:intron | 0.0% |
| !!! | TTTTTTTTTTTTTTTAATTT+TGG | + | chr1.2:60564708-60564727 | MS.gene91538:intron | 0.0% |
| !! | AAAAAAAAAAAGTAAAATAC+GGG | - | chr1.2:60564698-60564717 | None:intergenic | 10.0% |
| !! | TCTATTAAAGAATATTATAA+TGG | - | chr1.2:60563172-60563191 | None:intergenic | 10.0% |
| !!! | AATTTACTTAATAAATTTTG+TGG | + | chr1.2:60565169-60565188 | MS.gene91538:intron | 10.0% |
| !!! | AATTTATATTTAATTTCTTG+TGG | + | chr1.2:60566958-60566977 | MS.gene91538:intron | 10.0% |
| !!! | AGTATTTTTTATTTCTTTTT+AGG | - | chr1.2:60563458-60563477 | None:intergenic | 10.0% |
| !!! | ATATATTTTATCTATGATTT+TGG | - | chr1.2:60562306-60562325 | None:intergenic | 10.0% |
| !!! | ATTATTTTAATCATTGATTA+AGG | + | chr1.2:60562647-60562666 | MS.gene91538:intron | 10.0% |
| !!! | TATATTTTATCTATGATTTT+GGG | - | chr1.2:60562305-60562324 | None:intergenic | 10.0% |
| !!! | TTTTCTATATTATTGTTTTA+TGG | + | chr1.2:60566193-60566212 | MS.gene91538:intron | 10.0% |
| !!! | TTTTTTTGACAATATATTAA+AGG | + | chr1.2:60562218-60562237 | MS.gene91538:intron | 10.0% |
| !! | AAAAAAAAAAGTAAAATACG+GGG | - | chr1.2:60564697-60564716 | None:intergenic | 15.0% |
| !! | AAAACAAATAAAATCAATCT+AGG | + | chr1.2:60563205-60563224 | MS.gene91538:intron | 15.0% |
| !! | AAATATACCAACAAAATAAT+TGG | - | chr1.2:60562751-60562770 | None:intergenic | 15.0% |
| !! | AATCATGTATAACAATATAT+GGG | - | chr1.2:60563481-60563500 | None:intergenic | 15.0% |
| !! | GTTGAGAAAATAATTTATAT+TGG | - | chr1.2:60567073-60567092 | None:intergenic | 15.0% |
| !! | TATTAATTAGAAAATTAACG+AGG | + | chr1.2:60564381-60564400 | MS.gene91538:intron | 15.0% |
| !!! | AAAAAACCGATTTTTAAAAT+AGG | - | chr1.2:60564670-60564689 | None:intergenic | 15.0% |
| !!! | AAAAACCGATTTTTAAAATA+GGG | - | chr1.2:60564669-60564688 | None:intergenic | 15.0% |
| !!! | ATTATGATTTTTTTTGCTTT+TGG | + | chr1.2:60561654-60561673 | MS.gene91538:intron | 15.0% |
| !!! | ATTCTGAAAAAAAGTAAAAT+AGG | + | chr1.2:60564912-60564931 | MS.gene91538:intron | 15.0% |
| !!! | ATTTTAAAAATCGGTTTTTT+TGG | + | chr1.2:60564670-60564689 | MS.gene91538:intron | 15.0% |
| !!! | GTTTTCATAAATTATCTTAA+AGG | - | chr1.2:60561915-60561934 | None:intergenic | 15.0% |
| !!! | TATTTTCAAATTATGTAATG+TGG | - | chr1.2:60566163-60566182 | None:intergenic | 15.0% |
| !!! | TTATGATTTTTTTTGCTTTT+GGG | + | chr1.2:60561655-60561674 | MS.gene91538:intron | 15.0% |
| !!! | TTCTGAAAAAAAGTAAAATA+GGG | + | chr1.2:60564913-60564932 | MS.gene91538:intron | 15.0% |
| !!! | TTTACTTTTTTTCAGAATTT+TGG | - | chr1.2:60564910-60564929 | None:intergenic | 15.0% |
| !! | AAAAACAATTGTTACATAAG+AGG | - | chr1.2:60563149-60563168 | None:intergenic | 20.0% |
| !! | AAAACAATTGTTACATAAGA+GGG | - | chr1.2:60563148-60563167 | None:intergenic | 20.0% |
| !! | AAACAAAACTCTGATAATTA+TGG | - | chr1.2:60565531-60565550 | None:intergenic | 20.0% |
| !! | AACTATTATGAAAGATTTAG+AGG | + | chr1.2:60566793-60566812 | MS.gene91538:intron | 20.0% |
| !! | ACATTATTGAAATCAAAACT+AGG | + | chr1.2:60564407-60564426 | MS.gene91538:intron | 20.0% |
| !! | ATGAATATAGAATACAAGAA+GGG | - | chr1.2:60562725-60562744 | None:intergenic | 20.0% |
| !! | CAATACAATAACTACAAATT+GGG | - | chr1.2:60562064-60562083 | None:intergenic | 20.0% |
| !! | CATTATTGAAATCAAAACTA+GGG | + | chr1.2:60564408-60564427 | MS.gene91538:intron | 20.0% |
| !! | GAATCATGTATAACAATATA+TGG | - | chr1.2:60563482-60563501 | None:intergenic | 20.0% |
| !! | GAGAAAATAATTTATATTGG+TGG | - | chr1.2:60567070-60567089 | None:intergenic | 20.0% |
| !! | GTATGGAATACAAAATTTAA+CGG | - | chr1.2:60564194-60564213 | None:intergenic | 20.0% |
| !! | TAATGAGTTAGATTCAAATA+TGG | + | chr1.2:60566817-60566836 | MS.gene91538:intron | 20.0% |
| !! | TATGAATATAGAATACAAGA+AGG | - | chr1.2:60562726-60562745 | None:intergenic | 20.0% |
| !! | TCTATTTCATAGAATAATTG+TGG | - | chr1.2:60566936-60566955 | None:intergenic | 20.0% |
| !! | TCTGAAAAAAAGTAAAATAG+GGG | + | chr1.2:60564914-60564933 | MS.gene91538:intron | 20.0% |
| !! | TGATCCTATATAATATGAAT+TGG | + | chr1.2:60566023-60566042 | MS.gene91538:intron | 20.0% |
| !! | TGTAAATTGTGTTATATGAA+TGG | - | chr1.2:60562557-60562576 | None:intergenic | 20.0% |
| !! | TTACTGAAAATTTATATCCT+TGG | + | chr1.2:60566334-60566353 | MS.gene91538:intron | 20.0% |
| !! | TTGGATTAATGAAATTTACA+AGG | + | chr1.2:60562081-60562100 | MS.gene91538:intron | 20.0% |
| !!! | AAAACCGATTTTTAAAATAG+GGG | - | chr1.2:60564668-60564687 | None:intergenic | 20.0% |
| !!! | AAATAAATGGTCTATCTTTT+GGG | - | chr1.2:60564542-60564561 | None:intergenic | 20.0% |
| !!! | AACATTTTTATGAAAATAGG+GGG | + | chr1.2:60564946-60564965 | MS.gene91538:intron | 20.0% |
| !!! | AAGTTTTCATATCTTTTTGT+GGG | + | chr1.2:60563517-60563536 | MS.gene91538:intron | 20.0% |
| !!! | ACCAACATTTTTATGAAAAT+AGG | + | chr1.2:60564943-60564962 | MS.gene91538:intron | 20.0% |
| !!! | CAACATTTTTATGAAAATAG+GGG | + | chr1.2:60564945-60564964 | MS.gene91538:intron | 20.0% |
| !!! | CCAACATTTTTATGAAAATA+GGG | + | chr1.2:60564944-60564963 | MS.gene91538:intron | 20.0% |
| !!! | GCTGTTTTTTAATTCTTTAT+AGG | + | chr1.2:60565249-60565268 | MS.gene91538:intron | 20.0% |
| !!! | GTATATTTGAATTGATTTAC+TGG | + | chr1.2:60562763-60562782 | MS.gene91538:intron | 20.0% |
| !!! | TAAATAAATGGTCTATCTTT+TGG | - | chr1.2:60564543-60564562 | None:intergenic | 20.0% |
| !!! | TAAGTTTTCATATCTTTTTG+TGG | + | chr1.2:60563516-60563535 | MS.gene91538:intron | 20.0% |
| !!! | TATGATTTTTTTTGCTTTTG+GGG | + | chr1.2:60561656-60561675 | MS.gene91538:intron | 20.0% |
| !!! | TCATATACCAATTATTTTGT+TGG | + | chr1.2:60562741-60562760 | MS.gene91538:intron | 20.0% |
| !!! | TTATGAAAACAACTTTTGAT+GGG | + | chr1.2:60561925-60561944 | MS.gene91538:intron | 20.0% |
| !!! | TTATTTTACTCTTCAATTAG+AGG | + | chr1.2:60562855-60562874 | MS.gene91538:intron | 20.0% |
| !!! | TTTATGAAAACAACTTTTGA+TGG | + | chr1.2:60561924-60561943 | MS.gene91538:intron | 20.0% |
| !!! | TTTTCATAAAAATGTTGGTT+TGG | - | chr1.2:60564942-60564961 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGTTAATCTCATA+TGG | + | chr1.2:60565886-60565905 | MS.gene91538:intron | 20.0% |
| ! | AAGGCATGAAAATTAATACT+TGG | - | chr1.2:60563260-60563279 | None:intergenic | 25.0% |
| ! | AATAACATCCATAGAAGAAA+GGG | - | chr1.2:60564034-60564053 | None:intergenic | 25.0% |
| ! | AATTTATGACTACCAATTGT+TGG | + | chr1.2:60562263-60562282 | MS.gene91538:intron | 25.0% |
| ! | ACATAGTTAGGTTTCAAAAT+TGG | - | chr1.2:60563832-60563851 | None:intergenic | 25.0% |
| ! | ACTGACATATCATTATTTCA+GGG | + | chr1.2:60563280-60563299 | MS.gene91538:intron | 25.0% |
| ! | AGTCAGAATATAAATTCGAA+TGG | + | chr1.2:60562481-60562500 | MS.gene91538:intron | 25.0% |
| ! | ATAAACACACTTATAGCTAA+TGG | + | chr1.2:60565382-60565401 | MS.gene91538:CDS | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | chr1.2:60562014-60562033 | MS.gene91538:intron | 25.0% |
| ! | ATAATATGTTCAAATGGCTA+AGG | - | chr1.2:60565096-60565115 | None:intergenic | 25.0% |
| ! | ATCTAATGCATTATGCTAAT+TGG | - | chr1.2:60566550-60566569 | None:intergenic | 25.0% |
| ! | ATGAGTCAAAAAATAAAGCT+TGG | - | chr1.2:60564216-60564235 | None:intergenic | 25.0% |
| ! | ATGGTTTAAGGAGATATTAA+AGG | + | chr1.2:60562189-60562208 | MS.gene91538:intron | 25.0% |
| ! | ATTAAATATGTATCCCAGAA+AGG | - | chr1.2:60565954-60565973 | None:intergenic | 25.0% |
| ! | ATTATATAGGATCATCATCA+TGG | - | chr1.2:60566017-60566036 | None:intergenic | 25.0% |
| ! | CAAAAAGCAAAATTTGATTC+AGG | - | chr1.2:60564062-60564081 | None:intergenic | 25.0% |
| ! | CAAATCTAGAGGTAAATAAA+TGG | - | chr1.2:60564555-60564574 | None:intergenic | 25.0% |
| ! | CATAGTTAGGTTTCAAAATT+GGG | - | chr1.2:60563831-60563850 | None:intergenic | 25.0% |
| ! | CCAATACAATAACTACAAAT+TGG | - | chr1.2:60562065-60562084 | None:intergenic | 25.0% |
| ! | CCAATTTGTAGTTATTGTAT+TGG | + | chr1.2:60562062-60562081 | MS.gene91538:intron | 25.0% |
| ! | CTAGCCAATTCATATTATAT+AGG | - | chr1.2:60566030-60566049 | None:intergenic | 25.0% |
| ! | CTGAAAAAAAGTAAAATAGG+GGG | + | chr1.2:60564915-60564934 | MS.gene91538:intron | 25.0% |
| ! | CTTTCTATCATTCATGAAAA+TGG | - | chr1.2:60561740-60561759 | None:intergenic | 25.0% |
| ! | GAAATAATGATATGTCAGTA+AGG | - | chr1.2:60563279-60563298 | None:intergenic | 25.0% |
| ! | GTTATTACATAGACATAGTT+AGG | - | chr1.2:60563844-60563863 | None:intergenic | 25.0% |
| ! | TAATAGCGTAAATTAGTAAC+AGG | - | chr1.2:60564366-60564385 | None:intergenic | 25.0% |
| ! | TACTGACATATCATTATTTC+AGG | + | chr1.2:60563279-60563298 | MS.gene91538:intron | 25.0% |
| ! | TAGAAAAGATGGTAGAAAAT+AGG | + | chr1.2:60566669-60566688 | MS.gene91538:intron | 25.0% |
| ! | TATGCTTTACACGTTAAAAT+TGG | + | chr1.2:60566306-60566325 | MS.gene91538:intron | 25.0% |
| ! | TCAAAAAATAAAGCTTGGTA+TGG | - | chr1.2:60564211-60564230 | None:intergenic | 25.0% |
| ! | TCGTATTTCATATACACATT+TGG | - | chr1.2:60565726-60565745 | None:intergenic | 25.0% |
| ! | TCTATGATGTTTCATATATC+AGG | + | chr1.2:60563710-60563729 | MS.gene91538:intron | 25.0% |
| ! | TCTCAAATATCCATATATCA+CGG | - | chr1.2:60567152-60567171 | None:intergenic | 25.0% |
| ! | TCTTTCATAATAGTTTCTCT+AGG | - | chr1.2:60566788-60566807 | None:intergenic | 25.0% |
| ! | TGATATATGGATATTTGAGA+AGG | + | chr1.2:60567152-60567171 | MS.gene91538:CDS | 25.0% |
| ! | TTAAAGTAAGAGAAACTACA+TGG | + | chr1.2:60565576-60565595 | MS.gene91538:CDS | 25.0% |
| ! | TTCTTACTAGTTATGGTTTA+AGG | + | chr1.2:60562177-60562196 | MS.gene91538:intron | 25.0% |
| !! | AAGGAAAGGAAATTTTATCA+TGG | - | chr1.2:60565354-60565373 | None:intergenic | 25.0% |
| !! | ACATTTTTATGAAAATAGGG+GGG | + | chr1.2:60564947-60564966 | MS.gene91538:intron | 25.0% |
| !! | CCCTATTTTCATAAAAATGT+TGG | - | chr1.2:60564947-60564966 | None:intergenic | 25.0% |
| !! | GTTTAAGTTCTTACTAGTTA+TGG | + | chr1.2:60562170-60562189 | MS.gene91538:intron | 25.0% |
| !! | TAATGATTTAGATGGACTTT+AGG | + | chr1.2:60563119-60563138 | MS.gene91538:intron | 25.0% |
| !! | TTATATTGGTGGTAAAGAAA+TGG | - | chr1.2:60567059-60567078 | None:intergenic | 25.0% |
| !!! | AAACCGATTTTTAAAATAGG+GGG | - | chr1.2:60564667-60564686 | None:intergenic | 25.0% |
| !!! | GTTTTAAACAAGGTTGATTT+TGG | - | chr1.2:60564436-60564455 | None:intergenic | 25.0% |
| !!! | TTCATGTATTTTTAACCACT+AGG | + | chr1.2:60565272-60565291 | MS.gene91538:intron | 25.0% |
| !!! | TTTGCTTCATTTTGTTTCTT+TGG | + | chr1.2:60565219-60565238 | MS.gene91538:intron | 25.0% |
| AAAATTCGCAATTGAAGTGA+AGG | + | chr1.2:60562815-60562834 | MS.gene91538:intron | 30.0% | |
| AAAGAAACAGTTCTATCTAG+AGG | + | chr1.2:60564140-60564159 | MS.gene91538:CDS | 30.0% | |
| AAATTCGCAATTGAAGTGAA+GGG | + | chr1.2:60562816-60562835 | MS.gene91538:intron | 30.0% | |
| AACTTTATAAGTATGCATCC+TGG | + | chr1.2:60563673-60563692 | MS.gene91538:intron | 30.0% | |
| AATTTAAGAGAACCTACCAT+AGG | - | chr1.2:60561808-60561827 | None:intergenic | 30.0% | |
| ACAGTTCATAGCTACAATTA+AGG | + | chr1.2:60562898-60562917 | MS.gene91538:intron | 30.0% | |
| ACTTATTTGAGCTTATCTAC+GGG | + | chr1.2:60561884-60561903 | MS.gene91538:intron | 30.0% | |
| AGCAAATCTCTGTAATCAAA+AGG | - | chr1.2:60565205-60565224 | None:intergenic | 30.0% | |
| AGGCTGATAATATGTTCAAA+TGG | - | chr1.2:60565102-60565121 | None:intergenic | 30.0% | |
| ATACTTGGTCTGCAAATAAA+CGG | - | chr1.2:60563245-60563264 | None:intergenic | 30.0% | |
| ATATGCTTCAAATTTCTGCA+AGG | - | chr1.2:60566413-60566432 | None:intergenic | 30.0% | |
| ATCATGATAAATTGTCCTAG+TGG | - | chr1.2:60565290-60565309 | None:intergenic | 30.0% | |
| ATGATACTACTCAATCCAAT+CGG | - | chr1.2:60565815-60565834 | None:intergenic | 30.0% | |
| ATGTTTAGCCAAAATCTCAA+GGG | - | chr1.2:60566285-60566304 | None:intergenic | 30.0% | |
| ATTGATTAAGGTTATCCAAG+TGG | + | chr1.2:60562659-60562678 | MS.gene91538:intron | 30.0% | |
| ATTGCAAGGTTAAGAAAAAC+AGG | + | chr1.2:60564111-60564130 | MS.gene91538:CDS | 30.0% | |
| ATTTAAGAGAACCTACCATA+GGG | - | chr1.2:60561807-60561826 | None:intergenic | 30.0% | |
| ATTTATGTATCTGCTTCATC+AGG | - | chr1.2:60565122-60565141 | None:intergenic | 30.0% | |
| CACTGGATAAAATCACAAAA+AGG | - | chr1.2:60565467-60565486 | None:intergenic | 30.0% | |
| CATAAGTTGTTTATCCAAAC+AGG | + | chr1.2:60562013-60562032 | MS.gene91538:intron | 30.0% | |
| CTAGGACAATTTATCATGAT+TGG | + | chr1.2:60565290-60565309 | MS.gene91538:intron | 30.0% | |
| GAAACCAGTACTTGAATAAA+GGG | - | chr1.2:60567108-60567127 | None:intergenic | 30.0% | |
| GAATAACATCCATAGAAGAA+AGG | - | chr1.2:60564035-60564054 | None:intergenic | 30.0% | |
| GACTTATTTGAGCTTATCTA+CGG | + | chr1.2:60561883-60561902 | MS.gene91538:intron | 30.0% | |
| GCAAAAATGTGTCTAATAAG+CGG | + | chr1.2:60564823-60564842 | MS.gene91538:intron | 30.0% | |
| GCTACAATCAATAAACTACA+TGG | + | chr1.2:60564510-60564529 | MS.gene91538:intron | 30.0% | |
| TAAGGTTCATAGATAATTCC+TGG | - | chr1.2:60563328-60563347 | None:intergenic | 30.0% | |
| TAGAAATTATAGAGAAGACC+AGG | - | chr1.2:60563694-60563713 | None:intergenic | 30.0% | |
| TCCAGAGTTAATGATTTAGA+TGG | + | chr1.2:60563111-60563130 | MS.gene91538:intron | 30.0% | |
| TCCATCTAAATCATTAACTC+TGG | - | chr1.2:60563115-60563134 | None:intergenic | 30.0% | |
| TCTTTGTCTCATATAGTAGA+CGG | + | chr1.2:60566596-60566615 | MS.gene91538:intron | 30.0% | |
| TGATGAAGCAGATACATAAA+TGG | + | chr1.2:60565121-60565140 | MS.gene91538:intron | 30.0% | |
| TGGTTTATGATCGAACATTA+TGG | + | chr1.2:60566837-60566856 | MS.gene91538:intron | 30.0% | |
| TTCGCAAAAATAATACACAC+TGG | - | chr1.2:60565484-60565503 | None:intergenic | 30.0% | |
| TTGTCACGTCATAAATGAAT+AGG | - | chr1.2:60564772-60564791 | None:intergenic | 30.0% | |
| TTGTTGTCAATGTCTTTCTT+AGG | + | chr1.2:60561702-60561721 | MS.gene91538:intron | 30.0% | |
| TTTATAAGTATGCACCCATT+AGG | + | chr1.2:60564479-60564498 | MS.gene91538:intron | 30.0% | |
| TTTGACATTTCGATCTACAA+TGG | + | chr1.2:60561607-60561626 | MS.gene91538:CDS | 30.0% | |
| ! | AACCTAACCTTTTCCAAAAT+GGG | - | chr1.2:60563369-60563388 | None:intergenic | 30.0% |
| ! | AACTTGATAGTTGATACAGT+GGG | + | chr1.2:60567018-60567037 | MS.gene91538:intron | 30.0% |
| ! | ATTGCGAATTTTGAACAGAA+AGG | - | chr1.2:60562807-60562826 | None:intergenic | 30.0% |
| ! | GTTTCAAAACTGCATCTTTT+AGG | - | chr1.2:60565022-60565041 | None:intergenic | 30.0% |
| ! | TAGACACATTTTTGCTAACA+TGG | - | chr1.2:60564818-60564837 | None:intergenic | 30.0% |
| ! | TCTGCTAATTTTCCAACAAT+TGG | - | chr1.2:60562278-60562297 | None:intergenic | 30.0% |
| ! | TGTTTTTCTTAACCTTGCAA+TGG | - | chr1.2:60564112-60564131 | None:intergenic | 30.0% |
| ! | TTTGAAGCATATGACTCAAA+AGG | + | chr1.2:60566421-60566440 | MS.gene91538:CDS | 30.0% |
| !! | AGAAAATCCCATTTTGGAAA+AGG | + | chr1.2:60563359-60563378 | MS.gene91538:CDS | 30.0% |
| !! | AGAAGCGTTTGATAAAACAT+TGG | - | chr1.2:60561567-60561586 | None:intergenic | 30.0% |
| !! | CTTTAGTTGTTGTTTGTTGT+TGG | - | chr1.2:60564243-60564262 | None:intergenic | 30.0% |
| !! | TAGTATCATTAGCTTTGCTA+GGG | + | chr1.2:60565826-60565845 | MS.gene91538:intron | 30.0% |
| !! | TCTGCAAATAAACGGATTAT+AGG | - | chr1.2:60563237-60563256 | None:intergenic | 30.0% |
| !! | TTTGATTTGATGTATCCTTC+TGG | - | chr1.2:60564458-60564477 | None:intergenic | 30.0% |
| !!! | AAAGGCTTTAAATGCACTTT+TGG | - | chr1.2:60564973-60564992 | None:intergenic | 30.0% |
| !!! | CTTTGCTCGTCTATTTTTTT+AGG | + | chr1.2:60562148-60562167 | MS.gene91538:intron | 30.0% |
| !!! | TATCCTTCTGGTTTTAAACA+AGG | - | chr1.2:60564446-60564465 | None:intergenic | 30.0% |
| !!! | TTTTTTGCTTTTGGGGTTTT+GGG | + | chr1.2:60561663-60561682 | MS.gene91538:intron | 30.0% |
| !!! | TTTTTTTGCTTTTGGGGTTT+TGG | + | chr1.2:60561662-60561681 | MS.gene91538:intron | 30.0% |
| AAAAATAGACGAGCAAAGCT+CGG | - | chr1.2:60562146-60562165 | None:intergenic | 35.0% | |
| AAAATGCCTATACCATTGCA+AGG | + | chr1.2:60564097-60564116 | MS.gene91538:CDS | 35.0% | |
| AACGAAAAGCGACTTAATGA+TGG | + | chr1.2:60563759-60563778 | MS.gene91538:CDS | 35.0% | |
| AAGATTGGGGGCAAATAAAA+AGG | - | chr1.2:60563898-60563917 | None:intergenic | 35.0% | |
| AAGTGAAGGGTTTCTTCAAA+AGG | + | chr1.2:60562829-60562848 | MS.gene91538:intron | 35.0% | |
| ACAATATTCATCCCATCTTC+TGG | + | chr1.2:60561523-60561542 | MS.gene91538:CDS | 35.0% | |
| ACCATCCATTGAAAAGACAA+AGG | - | chr1.2:60563016-60563035 | None:intergenic | 35.0% | |
| AGAAGATGGGATGAATATTG+TGG | - | chr1.2:60561524-60561543 | None:intergenic | 35.0% | |
| AGAGTTCGTATCAAAACAAC+GGG | - | chr1.2:60565629-60565648 | None:intergenic | 35.0% | |
| AGATGGTAGAAAATAGGCTT+AGG | + | chr1.2:60566675-60566694 | MS.gene91538:intron | 35.0% | |
| AGATTGGGGGCAAATAAAAA+GGG | - | chr1.2:60563897-60563916 | None:intergenic | 35.0% | |
| AGTAACTGCAGTAGAAAAGA+TGG | + | chr1.2:60566658-60566677 | MS.gene91538:intron | 35.0% | |
| AGTATGAAGAGTAGATCAGA+TGG | + | chr1.2:60566730-60566749 | MS.gene91538:intron | 35.0% | |
| AGTGACCTAAAAATGAGACA+AGG | + | chr1.2:60564882-60564901 | MS.gene91538:intron | 35.0% | |
| AGTGTGTTTATCTGCAGAAA+AGG | - | chr1.2:60565373-60565392 | None:intergenic | 35.0% | |
| ATAGTAGACGGGATAGAATT+AGG | + | chr1.2:60566608-60566627 | MS.gene91538:intron | 35.0% | |
| ATCTCTGTAATCAAAAGGTG+TGG | - | chr1.2:60565200-60565219 | None:intergenic | 35.0% | |
| ATGAATTGGCTAGATCTTGT+TGG | + | chr1.2:60566037-60566056 | MS.gene91538:intron | 35.0% | |
| ATGGTGACAAACACTCATTA+AGG | + | chr1.2:60565401-60565420 | MS.gene91538:CDS | 35.0% | |
| ATTTCTTTGTCTTTGCAGCT+TGG | + | chr1.2:60566218-60566237 | MS.gene91538:intron | 35.0% | |
| CAATATTCATCCCATCTTCT+GGG | + | chr1.2:60561524-60561543 | MS.gene91538:CDS | 35.0% | |
| CAGAGTTCGTATCAAAACAA+CGG | - | chr1.2:60565630-60565649 | None:intergenic | 35.0% | |
| CATGTTTAGCCAAAATCTCA+AGG | - | chr1.2:60566286-60566305 | None:intergenic | 35.0% | |
| CTACTCTTCATACTACATAC+TGG | - | chr1.2:60566724-60566743 | None:intergenic | 35.0% | |
| CTTTGTCTCATATAGTAGAC+GGG | + | chr1.2:60566597-60566616 | MS.gene91538:intron | 35.0% | |
| GAAACATTCAAACTCCTTTG+TGG | + | chr1.2:60565037-60565056 | MS.gene91538:intron | 35.0% | |
| GACAAGAACCTGGAAAATAT+AGG | - | chr1.2:60567130-60567149 | None:intergenic | 35.0% | |
| GAGATAAGAAGCTAAAGCAA+TGG | - | chr1.2:60563409-60563428 | None:intergenic | 35.0% | |
| GGAAACCAGTACTTGAATAA+AGG | - | chr1.2:60567109-60567128 | None:intergenic | 35.0% | |
| GGATAAACAACTTATGTTGC+AGG | - | chr1.2:60562009-60562028 | None:intergenic | 35.0% | |
| GTGACCTAAAAATGAGACAA+GGG | + | chr1.2:60564883-60564902 | MS.gene91538:intron | 35.0% | |
| GTTTATCTGCAGAAAAGGAA+AGG | - | chr1.2:60565368-60565387 | None:intergenic | 35.0% | |
| TACATGGAGCAAGGTTTATT+GGG | + | chr1.2:60565592-60565611 | MS.gene91538:CDS | 35.0% | |
| TAGAGTTTCTTTGACCTGAT+GGG | + | chr1.2:60562456-60562475 | MS.gene91538:intron | 35.0% | |
| TAGCAATAAACAGACCACAA+AGG | - | chr1.2:60565054-60565073 | None:intergenic | 35.0% | |
| TATATTCTGACTATCCCATC+AGG | - | chr1.2:60562473-60562492 | None:intergenic | 35.0% | |
| TCTTAACCTTGCAATGGTAT+AGG | - | chr1.2:60564106-60564125 | None:intergenic | 35.0% | |
| TCTTGTGGCATGAATTATGT+GGG | + | chr1.2:60566973-60566992 | MS.gene91538:intron | 35.0% | |
| TGCTAACATGGATATTAGTG+TGG | - | chr1.2:60564806-60564825 | None:intergenic | 35.0% | |
| TTCTTGTGGCATGAATTATG+TGG | + | chr1.2:60566972-60566991 | MS.gene91538:intron | 35.0% | |
| ! | AATACAAGAAGGGCATAAGT+GGG | - | chr1.2:60562715-60562734 | None:intergenic | 35.0% |
| ! | ACCTCTAGATTTGAAACTAG+AGG | + | chr1.2:60564562-60564581 | MS.gene91538:intron | 35.0% |
| ! | AGTACTGAATACTGGACAAT+AGG | + | chr1.2:60564002-60564021 | MS.gene91538:intron | 35.0% |
| ! | CAACCTAACCTTTTCCAAAA+TGG | - | chr1.2:60563370-60563389 | None:intergenic | 35.0% |
| ! | CAACCTTGTTTAAAACCAGA+AGG | + | chr1.2:60564440-60564459 | MS.gene91538:intron | 35.0% |
| ! | CTTTTCAATGGATGGTAAAG+TGG | + | chr1.2:60563020-60563039 | MS.gene91538:intron | 35.0% |
| ! | GAACTTGATAGTTGATACAG+TGG | + | chr1.2:60567017-60567036 | MS.gene91538:intron | 35.0% |
| ! | TCAGATTACCCTTGAGATTT+TGG | + | chr1.2:60566274-60566293 | MS.gene91538:CDS | 35.0% |
| ! | TCCTCTAGTTTCAAATCTAG+AGG | - | chr1.2:60564566-60564585 | None:intergenic | 35.0% |
| ! | TTATCATGATTGGTTCTTGC+TGG | + | chr1.2:60565300-60565319 | MS.gene91538:intron | 35.0% |
| !! | ACTGGTTTCCTATATTTTCC+AGG | + | chr1.2:60567119-60567138 | MS.gene91538:intron | 35.0% |
| !! | ATCCCATTTTGGAAAAGGTT+AGG | + | chr1.2:60563364-60563383 | MS.gene91538:intron | 35.0% |
| !! | GGTCCCCCTATTTTAAAAAT+CGG | + | chr1.2:60564661-60564680 | MS.gene91538:intron | 35.0% |
| !! | GTAGTATCATTAGCTTTGCT+AGG | + | chr1.2:60565825-60565844 | MS.gene91538:intron | 35.0% |
| !! | TTTTTATTTGCCCCCAATCT+TGG | + | chr1.2:60563897-60563916 | MS.gene91538:intron | 35.0% |
| AAAGACGCCAGTATGATCTA+GGG | - | chr1.2:60567188-60567207 | None:intergenic | 40.0% | |
| AAGAGAAACTACATGGAGCA+AGG | + | chr1.2:60565583-60565602 | MS.gene91538:CDS | 40.0% | |
| AATCATCCAACTGTGCTGTA+TGG | + | chr1.2:60561848-60561867 | MS.gene91538:intron | 40.0% | |
| AATCGAGCAATTCTTCCACT+TGG | - | chr1.2:60562677-60562696 | None:intergenic | 40.0% | |
| ACACCTCATCTAGTGAAAAG+AGG | - | chr1.2:60564266-60564285 | None:intergenic | 40.0% | |
| ACCTCCAAAAATAGACCCTA+TGG | - | chr1.2:60565852-60565871 | None:intergenic | 40.0% | |
| ACTGTGCTGTATGGTCTAAT+TGG | + | chr1.2:60561857-60561876 | MS.gene91538:intron | 40.0% | |
| AGAGGCTATCAGTATGTACA+AGG | + | chr1.2:60564158-60564177 | MS.gene91538:CDS | 40.0% | |
| AGATAATTCCTGGACTTGAC+AGG | - | chr1.2:60563318-60563337 | None:intergenic | 40.0% | |
| AGCTATGAACTGTGTGTCTT+GGG | - | chr1.2:60562891-60562910 | None:intergenic | 40.0% | |
| AGGTTCTTGTCCGTGATATA+TGG | + | chr1.2:60567139-60567158 | MS.gene91538:intron | 40.0% | |
| ATAGGCCTAACAGGTTACAT+AGG | - | chr1.2:60566071-60566090 | None:intergenic | 40.0% | |
| ATATATCACGGACAAGAACC+TGG | - | chr1.2:60567140-60567159 | None:intergenic | 40.0% | |
| ATCAGGATGTTCACTAGAAG+TGG | + | chr1.2:60563727-60563746 | MS.gene91538:intron | 40.0% | |
| ATGAAGAGTAGATCAGATGG+AGG | + | chr1.2:60566733-60566752 | MS.gene91538:intron | 40.0% | |
| ATGACACCATTAGAGAGAGT+TGG | + | chr1.2:60566632-60566651 | MS.gene91538:intron | 40.0% | |
| ATGACCCAAAAATGAGACGA+AGG | - | chr1.2:60564735-60564754 | None:intergenic | 40.0% | |
| ATGCTGCAATTCTCCAAGAT+TGG | - | chr1.2:60563913-60563932 | None:intergenic | 40.0% | |
| ATTAGACCATACAGCACAGT+TGG | - | chr1.2:60561857-60561876 | None:intergenic | 40.0% | |
| CATATGTGTATCTGCTCTTC+TGG | - | chr1.2:60566094-60566113 | None:intergenic | 40.0% | |
| CCAGTACTTGAATAAAGGGT+AGG | - | chr1.2:60567104-60567123 | None:intergenic | 40.0% | |
| CCTACCCTTTATTCAAGTAC+TGG | + | chr1.2:60567101-60567120 | MS.gene91538:intron | 40.0% | |
| CGAACACTAACAAACATGAC+AGG | - | chr1.2:60562372-60562391 | None:intergenic | 40.0% | |
| CTACATGGAGCAAGGTTTAT+TGG | + | chr1.2:60565591-60565610 | MS.gene91538:CDS | 40.0% | |
| CTAGAGTTTCTTTGACCTGA+TGG | + | chr1.2:60562455-60562474 | MS.gene91538:intron | 40.0% | |
| CTATCAAGTTCCCTTTGCTA+TGG | - | chr1.2:60567008-60567027 | None:intergenic | 40.0% | |
| CTCTTCAATTAGAGGAAGAG+TGG | + | chr1.2:60562863-60562882 | MS.gene91538:intron | 40.0% | |
| GAAAAGCGACTTAATGATGG+AGG | + | chr1.2:60563762-60563781 | MS.gene91538:CDS | 40.0% | |
| GAAAATAGGCTTAGGTGGTT+TGG | + | chr1.2:60566683-60566702 | MS.gene91538:intron | 40.0% | |
| GAGCAAGGTTTATTGGGAAA+TGG | + | chr1.2:60565598-60565617 | MS.gene91538:CDS | 40.0% | |
| GATGTTCACTAGAAGTGGTT+GGG | + | chr1.2:60563732-60563751 | MS.gene91538:CDS | 40.0% | |
| GCCTTGAAGACACATCAAAT+CGG | - | chr1.2:60563624-60563643 | None:intergenic | 40.0% | |
| GGGAGTGGGAGATAAAATAT+TGG | - | chr1.2:60563877-60563896 | None:intergenic | 40.0% | |
| TAATCTACCATGTCCCTGTT+TGG | - | chr1.2:60562030-60562049 | None:intergenic | 40.0% | |
| TACTGGGACTTCAACAACTT+AGG | + | chr1.2:60566366-60566385 | MS.gene91538:intron | 40.0% | |
| TAGCTATGAACTGTGTGTCT+TGG | - | chr1.2:60562892-60562911 | None:intergenic | 40.0% | |
| TATCATGGAGCCAACAAAAG+AGG | - | chr1.2:60565339-60565358 | None:intergenic | 40.0% | |
| TCAATGTCTTTCTTAGGCTG+CGG | + | chr1.2:60561708-60561727 | MS.gene91538:intron | 40.0% | |
| TGACACCATTAGAGAGAGTT+GGG | + | chr1.2:60566633-60566652 | MS.gene91538:intron | 40.0% | |
| TGCTGCAATTCTCCAAGATT+GGG | - | chr1.2:60563912-60563931 | None:intergenic | 40.0% | |
| TGGTAGAAAATAGGCTTAGG+TGG | + | chr1.2:60566678-60566697 | MS.gene91538:intron | 40.0% | |
| TGTCGCTGGAGATAAAAACA+AGG | + | chr1.2:60566450-60566469 | MS.gene91538:CDS | 40.0% | |
| TGTTTATCCAAACAGGGACA+TGG | + | chr1.2:60562020-60562039 | MS.gene91538:intron | 40.0% | |
| TTTGGGCTCAAATGCACATT+TGG | + | chr1.2:60564607-60564626 | MS.gene91538:intron | 40.0% | |
| ! | AAGCCTCTTTTCACTAGATG+AGG | + | chr1.2:60564260-60564279 | MS.gene91538:intron | 40.0% |
| ! | AGCAGCCTTTGTCTTTTCAA+TGG | + | chr1.2:60563008-60563027 | MS.gene91538:intron | 40.0% |
| ! | ATGAATTATGTGGGAGCATG+GGG | + | chr1.2:60566982-60567001 | MS.gene91538:intron | 40.0% |
| ! | ATTTTCTCACGAGGTTCGTA+AGG | - | chr1.2:60563346-60563365 | None:intergenic | 40.0% |
| ! | CAAAATGGGATTTTCTCACG+AGG | - | chr1.2:60563355-60563374 | None:intergenic | 40.0% |
| ! | CATGAATTATGTGGGAGCAT+GGG | + | chr1.2:60566981-60567000 | MS.gene91538:intron | 40.0% |
| ! | CTCGTGAGAAAATCCCATTT+TGG | + | chr1.2:60563353-60563372 | MS.gene91538:CDS | 40.0% |
| ! | CTGAGAAGATGTTTTCCGTA+TGG | + | chr1.2:60565434-60565453 | MS.gene91538:intron | 40.0% |
| ! | GAATACAAGAAGGGCATAAG+TGG | - | chr1.2:60562716-60562735 | None:intergenic | 40.0% |
| ! | GATGTGTTGGGTTGTTCAAT+TGG | - | chr1.2:60562529-60562548 | None:intergenic | 40.0% |
| ! | GCCTTTGTCTTTTCAATGGA+TGG | + | chr1.2:60563012-60563031 | MS.gene91538:intron | 40.0% |
| ! | TGGAAAAGGTTAGGTTGCAA+TGG | + | chr1.2:60563373-60563392 | MS.gene91538:intron | 40.0% |
| ! | TGGAGAAGAAAGAGCATGAA+AGG | + | chr1.2:60562401-60562420 | MS.gene91538:intron | 40.0% |
| ! | TTGGTCCTTCGTCTCATTTT+TGG | + | chr1.2:60564727-60564746 | MS.gene91538:intron | 40.0% |
| !! | ACCGATTTGATGTGTCTTCA+AGG | + | chr1.2:60563620-60563639 | MS.gene91538:intron | 40.0% |
| !! | CAAGGATGACTTTTGTTGTG+TGG | + | chr1.2:60562099-60562118 | MS.gene91538:intron | 40.0% |
| !! | GATATCTCCAAAAGCATCGT+AGG | + | chr1.2:60567215-60567234 | MS.gene91538:CDS | 40.0% |
| !! | GTGCAGAAAGTACTGAATAC+TGG | + | chr1.2:60563994-60564013 | MS.gene91538:intron | 40.0% |
| !! | TGGTCCCTTGTCTCATTTTT+AGG | - | chr1.2:60564890-60564909 | None:intergenic | 40.0% |
| !! | TGGTCCTTCGTCTCATTTTT+GGG | + | chr1.2:60564728-60564747 | MS.gene91538:intron | 40.0% |
| !!! | TTTGCTTTTTGCTCTGCTAC+AGG | + | chr1.2:60564071-60564090 | MS.gene91538:intron | 40.0% |
| AAAGACAAAGGCTGCTCATG+TGG | - | chr1.2:60563004-60563023 | None:intergenic | 45.0% | |
| AAGTATGCACCCATTAGGTG+AGG | + | chr1.2:60564484-60564503 | MS.gene91538:intron | 45.0% | |
| AATGGTAGAGACCTCTCAAC+AGG | + | chr1.2:60562499-60562518 | MS.gene91538:intron | 45.0% | |
| ACTACCCCAACTCTCTCTAA+TGG | - | chr1.2:60566641-60566660 | None:intergenic | 45.0% | |
| AGATCATACTGGCGTCTTTG+TGG | + | chr1.2:60567189-60567208 | MS.gene91538:CDS | 45.0% | |
| ATCCAGAGACACACACTACA+AGG | - | chr1.2:60566498-60566517 | None:intergenic | 45.0% | |
| ATCCTTGTAGTGTGTGTCTC+TGG | + | chr1.2:60566493-60566512 | MS.gene91538:intron | 45.0% | |
| ATGAATGGCTCGTGATGTGT+TGG | - | chr1.2:60562542-60562561 | None:intergenic | 45.0% | |
| ATGTAGTCGAACCCACTTAG+TGG | + | chr1.2:60566874-60566893 | MS.gene91538:intron | 45.0% | |
| CAAAAAGGAAGCGAGCCATA+CGG | - | chr1.2:60565452-60565471 | None:intergenic | 45.0% | |
| CAAAGACGCCAGTATGATCT+AGG | - | chr1.2:60567189-60567208 | None:intergenic | 45.0% | |
| CCAACAAAAGAGGCAAACGA+AGG | - | chr1.2:60565329-60565348 | None:intergenic | 45.0% | |
| CGCTGGAGATAAAAACAAGG+AGG | + | chr1.2:60566453-60566472 | MS.gene91538:CDS | 45.0% | |
| CGTTTCTCCCTAGATCATAC+TGG | + | chr1.2:60567178-60567197 | MS.gene91538:CDS | 45.0% | |
| CTGCAATTCTCCAAGATTGG+GGG | - | chr1.2:60563910-60563929 | None:intergenic | 45.0% | |
| GAATAAAGGGTAGGACACTG+AGG | - | chr1.2:60567095-60567114 | None:intergenic | 45.0% | |
| GAATACTGGACAATAGGCAG+TGG | + | chr1.2:60564008-60564027 | MS.gene91538:intron | 45.0% | |
| GACACACACTACAAGGATGT+AGG | - | chr1.2:60566491-60566510 | None:intergenic | 45.0% | |
| GACACCATTAGAGAGAGTTG+GGG | + | chr1.2:60566634-60566653 | MS.gene91538:intron | 45.0% | |
| GCATGAATTATGTGGGAGCA+TGG | + | chr1.2:60566980-60566999 | MS.gene91538:intron | 45.0% | |
| GCATGCCTATGTAACCTGTT+AGG | + | chr1.2:60566063-60566082 | MS.gene91538:intron | 45.0% | |
| GCTGCAATTCTCCAAGATTG+GGG | - | chr1.2:60563911-60563930 | None:intergenic | 45.0% | |
| GGATGTTCACTAGAAGTGGT+TGG | + | chr1.2:60563731-60563750 | MS.gene91538:intron | 45.0% | |
| GGCTATCAGTATGTACAAGG+AGG | + | chr1.2:60564161-60564180 | MS.gene91538:CDS | 45.0% | |
| GGGGCAAATAAAAAGGGAGT+GGG | - | chr1.2:60563891-60563910 | None:intergenic | 45.0% | |
| GTGTATCTGCTCTTCTGGAT+AGG | - | chr1.2:60566089-60566108 | None:intergenic | 45.0% | |
| GTTAGTGTTCGTAGTCGTCT+TGG | + | chr1.2:60562381-60562400 | MS.gene91538:intron | 45.0% | |
| TAAGAGAACCTACCATAGGG+CGG | - | chr1.2:60561804-60561823 | None:intergenic | 45.0% | |
| TAGATCAGATGGAGGAGAGT+CGG | + | chr1.2:60566741-60566760 | MS.gene91538:intron | 45.0% | |
| TCAAAAGGTTCTGTTGTCGC+TGG | + | chr1.2:60566436-60566455 | MS.gene91538:CDS | 45.0% | |
| TGAATGGCTCGTGATGTGTT+GGG | - | chr1.2:60562541-60562560 | None:intergenic | 45.0% | |
| TGTAGCTGACCTCACCTAAT+GGG | - | chr1.2:60564496-60564515 | None:intergenic | 45.0% | |
| TGTAGTCGAACCCACTTAGT+GGG | + | chr1.2:60566875-60566894 | MS.gene91538:intron | 45.0% | |
| TTGTAGCTGACCTCACCTAA+TGG | - | chr1.2:60564497-60564516 | None:intergenic | 45.0% | |
| ! | ACTAAGTGGGTTCGACTACA+TGG | - | chr1.2:60566875-60566894 | None:intergenic | 45.0% |
| ! | AGGGCCATAGGGTCTATTTT+TGG | + | chr1.2:60565845-60565864 | MS.gene91538:intron | 45.0% |
| ! | CACCACCTTTTCCAGATAGA+GGG | - | chr1.2:60562434-60562453 | None:intergenic | 45.0% |
| ! | CCTTCGTTTGCCTCTTTTGT+TGG | + | chr1.2:60565326-60565345 | MS.gene91538:intron | 45.0% |
| ! | GAAGCCTTATCCCACTAAGT+GGG | - | chr1.2:60566888-60566907 | None:intergenic | 45.0% |
| !! | ATCCTTGGTGTCATGAGTAC+TGG | + | chr1.2:60566349-60566368 | MS.gene91538:intron | 45.0% |
| !! | ATTAGCTTTGCTAGGGCCAT+AGG | + | chr1.2:60565833-60565852 | MS.gene91538:intron | 45.0% |
| !! | CAATTGGTTAGCCTGTTGAG+AGG | - | chr1.2:60562513-60562532 | None:intergenic | 45.0% |
| !! | GACTTTTGTTGTGTGGAGGA+TGG | + | chr1.2:60562106-60562125 | MS.gene91538:intron | 45.0% |
| !! | GGATGACTTTTGTTGTGTGG+AGG | + | chr1.2:60562102-60562121 | MS.gene91538:intron | 45.0% |
| !! | TCCTTGGTGTCATGAGTACT+GGG | + | chr1.2:60566350-60566369 | MS.gene91538:intron | 45.0% |
| !! | TTAGCTTTGCTAGGGCCATA+GGG | + | chr1.2:60565834-60565853 | MS.gene91538:intron | 45.0% |
| !!! | CAGGTTTTGATGGTGTCTCA+CGG | - | chr1.2:60565790-60565809 | None:intergenic | 45.0% |
| !!! | GCCATAGGGTCTATTTTTGG+AGG | + | chr1.2:60565848-60565867 | MS.gene91538:intron | 45.0% |
| !! | AAAAAAAAAAAAGTAAAATA+CGG | - | chr1.2:60564699-60564718 | None:intergenic | 5.0% |
| !! | AGTAAATTATTATTAATATA+TGG | - | chr1.2:60564338-60564357 | None:intergenic | 5.0% |
| !! | ATATATGAAATATTATTTAA+CGG | + | chr1.2:60562320-60562339 | MS.gene91538:intron | 5.0% |
| !! | ATATATTAATAATAATTTAC+TGG | + | chr1.2:60564337-60564356 | MS.gene91538:intron | 5.0% |
| !! | TATATTTAATAGAAAATTAA+AGG | - | chr1.2:60564991-60565010 | None:intergenic | 5.0% |
| !!! | ACATAATTTTTTTTTAAAAT+AGG | - | chr1.2:60564638-60564657 | None:intergenic | 5.0% |
| !!! | ATAATTTTTTTTTAAAATAG+GGG | - | chr1.2:60564636-60564655 | None:intergenic | 5.0% |
| !!! | CATAATTTTTTTTTAAAATA+GGG | - | chr1.2:60564637-60564656 | None:intergenic | 5.0% |
| !!! | GAAATTTTATTAATTTAATT+TGG | + | chr1.2:60564589-60564608 | MS.gene91538:intron | 5.0% |
| !!! | TTTAAAAAAAAATTATGTTT+TGG | + | chr1.2:60564640-60564659 | MS.gene91538:intron | 5.0% |
| CAGATTTGCCTGTCAAGTCC+AGG | + | chr1.2:60563307-60563326 | MS.gene91538:CDS | 50.0% | |
| CATACTGGCGTCTTTGTGGA+CGG | + | chr1.2:60567193-60567212 | MS.gene91538:CDS | 50.0% | |
| CCATCAAAACCTGGTCCGAT+TGG | + | chr1.2:60565797-60565816 | MS.gene91538:intron | 50.0% | |
| CCTCTATCTGGAAAAGGTGG+TGG | + | chr1.2:60562432-60562451 | MS.gene91538:intron | 50.0% | |
| CGAACCCACTTAGTGGGATA+AGG | + | chr1.2:60566881-60566900 | MS.gene91538:intron | 50.0% | |
| CGTGAGACACCATCAAAACC+TGG | + | chr1.2:60565788-60565807 | MS.gene91538:intron | 50.0% | |
| CTACTCAATCCAATCGGACC+AGG | - | chr1.2:60565809-60565828 | None:intergenic | 50.0% | |
| CTCTTCTGGATAGGCCTAAC+AGG | - | chr1.2:60566080-60566099 | None:intergenic | 50.0% | |
| GGGGGCAAATAAAAAGGGAG+TGG | - | chr1.2:60563892-60563911 | None:intergenic | 50.0% | |
| TAATGCACAAGTCCGCCCTA+TGG | + | chr1.2:60561789-60561808 | MS.gene91538:CDS | 50.0% | |
| TCCCAGTACTCATGACACCA+AGG | - | chr1.2:60566354-60566373 | None:intergenic | 50.0% | |
| TCTGCAGCTACCCAGAAGAT+GGG | - | chr1.2:60561537-60561556 | None:intergenic | 50.0% | |
| TTCTGCAGCTACCCAGAAGA+TGG | - | chr1.2:60561538-60561557 | None:intergenic | 50.0% | |
| ! | ATAGGGCGGACTTGTGCATT+AGG | - | chr1.2:60561790-60561809 | None:intergenic | 50.0% |
| ! | CACCTTTTCCAGATAGAGGG+CGG | - | chr1.2:60562431-60562450 | None:intergenic | 50.0% |
| ! | CCACCACCTTTTCCAGATAG+AGG | - | chr1.2:60562435-60562454 | None:intergenic | 50.0% |
| ! | CGAAGCCTTATCCCACTAAG+TGG | - | chr1.2:60566889-60566908 | None:intergenic | 50.0% |
| !! | CCAATCGGACCAGGTTTTGA+TGG | - | chr1.2:60565800-60565819 | None:intergenic | 50.0% |
| AAGGATTGCCGCCCTCTATC+TGG | + | chr1.2:60562420-60562439 | MS.gene91538:intron | 55.0% | |
| ACGAACTCTGCGTGCTCGTA+TGG | + | chr1.2:60565640-60565659 | MS.gene91538:CDS | 55.0% | |
| CGCCCTCTATCTGGAAAAGG+TGG | + | chr1.2:60562429-60562448 | MS.gene91538:intron | 55.0% | |
| CTGCTGCGCAGAACCTTTCT+GGG | + | chr1.2:60565938-60565957 | MS.gene91538:intron | 55.0% | |
| GAGCATGGGGCCATAGCAAA+GGG | + | chr1.2:60566995-60567014 | MS.gene91538:intron | 55.0% | |
| GAGGAGAGTCGGATCAGAAG+AGG | + | chr1.2:60566752-60566771 | MS.gene91538:intron | 55.0% | |
| GGCAGTGGCCCTTTCTTCTA+TGG | + | chr1.2:60564023-60564042 | MS.gene91538:intron | 55.0% | |
| TCTGCTGCGCAGAACCTTTC+TGG | + | chr1.2:60565937-60565956 | MS.gene91538:intron | 55.0% | |
| TGCCGCCCTCTATCTGGAAA+AGG | + | chr1.2:60562426-60562445 | MS.gene91538:intron | 55.0% | |
| GCACAAGTCCGCCCTATGGT+AGG | + | chr1.2:60561793-60561812 | MS.gene91538:intron | 60.0% | |
| GGAGCATGGGGCCATAGCAA+AGG | + | chr1.2:60566994-60567013 | MS.gene91538:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 60561464 | 60567236 | 60561464 | ID=MS.gene91538 |
| chr1.2 | mRNA | 60561464 | 60567236 | 60561464 | ID=MS.gene91538.t1;Parent=MS.gene91538 |
| chr1.2 | exon | 60561464 | 60561628 | 60561464 | ID=MS.gene91538.t1.exon1;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60561464 | 60561628 | 60561464 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60561724 | 60561810 | 60561724 | ID=MS.gene91538.t1.exon2;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60561724 | 60561810 | 60561724 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60563301 | 60563380 | 60563301 | ID=MS.gene91538.t1.exon3;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60563301 | 60563380 | 60563301 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60563732 | 60563783 | 60563732 | ID=MS.gene91538.t1.exon4;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60563732 | 60563783 | 60563732 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60564093 | 60564182 | 60564093 | ID=MS.gene91538.t1.exon5;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60564093 | 60564182 | 60564093 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60565382 | 60565450 | 60565382 | ID=MS.gene91538.t1.exon6;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60565382 | 60565450 | 60565382 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60565560 | 60565661 | 60565560 | ID=MS.gene91538.t1.exon7;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60565560 | 60565661 | 60565560 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60566236 | 60566304 | 60566236 | ID=MS.gene91538.t1.exon8;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60566236 | 60566304 | 60566236 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60566418 | 60566474 | 60566418 | ID=MS.gene91538.t1.exon9;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60566418 | 60566474 | 60566418 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| chr1.2 | exon | 60567141 | 60567236 | 60567141 | ID=MS.gene91538.t1.exon10;Parent=MS.gene91538.t1 |
| chr1.2 | CDS | 60567141 | 60567236 | 60567141 | ID=cds.MS.gene91538.t1;Parent=MS.gene91538.t1 |
| Gene Sequence |
| Protein sequence |
