Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91555.t1 | XP_013443380.1 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 5.70E-148 | 533.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91555.t1 | P57758 | 69.5 | 269 | 78 | 2 | 1 | 269 | 1 | 265 | 1.7e-103 | 377.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91555.t1 | A0A072TV48 | 97.8 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 4.1e-148 | 533.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene91555 | 0.813348 | 2.68E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene91555 | 0.807613 | 4.64E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene91555 | 0.812967 | 3.25E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91555.t1 | MTR_0018s0310 | 97.778 | 270 | 6 | 0 | 1 | 270 | 1 | 270 | 0.0 | 545 |
| MS.gene91555.t1 | MTR_0018s0320 | 71.119 | 277 | 73 | 2 | 1 | 270 | 1 | 277 | 3.38e-147 | 413 |
| MS.gene91555.t1 | MTR_6g022190 | 61.710 | 269 | 98 | 1 | 1 | 269 | 1 | 264 | 1.75e-124 | 355 |
| MS.gene91555.t1 | MTR_6g022180 | 60.507 | 276 | 102 | 2 | 2 | 270 | 4 | 279 | 1.93e-117 | 338 |
| MS.gene91555.t1 | MTR_6g022210 | 58.484 | 277 | 107 | 2 | 1 | 270 | 1 | 276 | 7.43e-115 | 331 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91555.t1 | AT5G40670 | 69.517 | 269 | 78 | 2 | 1 | 269 | 1 | 265 | 4.92e-137 | 387 |
Find 34 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTCACAAACCTCTTTC+TGG | 0.134131 | 7.1:-57817244 | None:intergenic |
| CATGTCTCTTATGAAGCTTT+AGG | 0.224216 | 7.1:+57816930 | MS.gene91555:CDS |
| GGTTCTTGGGTGAACTTCTA+TGG | 0.256402 | 7.1:+57820252 | MS.gene91555:intron |
| ATGTCTCTTATGAAGCTTTA+GGG | 0.295292 | 7.1:+57816931 | MS.gene91555:CDS |
| TAACATCATAGATTGCAATT+TGG | 0.357252 | 7.1:-57819170 | None:intergenic |
| GTACTGATGGATGGAGCATT+TGG | 0.371191 | 7.1:+57820070 | MS.gene91555:CDS |
| AGAAATCGATCATGTCTTCT+TGG | 0.379460 | 7.1:+57816892 | None:intergenic |
| TTGCATTGCACAATCATCAT+TGG | 0.400882 | 7.1:+57819369 | MS.gene91555:CDS |
| TCTTAAACTTTCGCAGGAAA+AGG | 0.446843 | 7.1:+57817000 | MS.gene91555:CDS |
| TTGTGTTTGATTAGTGTGGT+TGG | 0.463223 | 7.1:+57817107 | MS.gene91555:intron |
| GAGCATTTGGAACATTCTAC+TGG | 0.464204 | 7.1:+57820083 | MS.gene91555:CDS |
| ATATTAGTGACCTTGATCAA+TGG | 0.482678 | 7.1:-57820151 | None:intergenic |
| GACTTGACATTATCAAAGTC+AGG | 0.487582 | 7.1:-57820501 | None:intergenic |
| GTGAACTTCTATGGAAACAT+AGG | 0.490156 | 7.1:+57820261 | MS.gene91555:CDS |
| GGTAGCAAACTATGCACAAA+TGG | 0.504062 | 7.1:+57820119 | MS.gene91555:CDS |
| GGTCGTAAAATATATTCCTC+AGG | 0.510399 | 7.1:+57819546 | MS.gene91555:CDS |
| AAGTGATCTTAAACTTTCGC+AGG | 0.514012 | 7.1:+57816994 | MS.gene91555:CDS |
| TGCACAATCATCATTGGCTA+TGG | 0.522187 | 7.1:+57819375 | MS.gene91555:CDS |
| AGGGAAACTATTGCTATCCT+TGG | 0.525698 | 7.1:+57820281 | MS.gene91555:CDS |
| GCAACATCATTTGCTGCCAC+TGG | 0.537971 | 7.1:-57819105 | None:intergenic |
| CAACAATATAGAGATAAATA+CGG | 0.539767 | 7.1:+57817221 | MS.gene91555:CDS |
| CAGGATATAACACATAATGT+TGG | 0.552953 | 7.1:-57820452 | None:intergenic |
| TGAACTTCTATGGAAACATA+GGG | 0.561333 | 7.1:+57820262 | MS.gene91555:CDS |
| GCTATGCAATCCATTGATCA+AGG | 0.566651 | 7.1:+57820141 | MS.gene91555:CDS |
| AGATAAATACGGCCAGAAAG+AGG | 0.569324 | 7.1:+57817232 | MS.gene91555:CDS |
| GCTTCATAAGAGACATGAAG+TGG | 0.576703 | 7.1:-57816924 | None:intergenic |
| TATCATTCAAGTTTCTATGA+CGG | 0.577201 | 7.1:+57819525 | MS.gene91555:CDS |
| CATAATGTTGGATGATGAAG+AGG | 0.579723 | 7.1:-57820440 | None:intergenic |
| CAAGTCTTCTGATCAGACAT+TGG | 0.583223 | 7.1:+57820518 | MS.gene91555:CDS |
| CGAAAGTTTAAGATCACTTG+AGG | 0.587893 | 7.1:-57816990 | None:intergenic |
| TCTCTTATGAAGCTTTAGGG+TGG | 0.598428 | 7.1:+57816934 | MS.gene91555:CDS |
| AAAGTATCTAAAATTGCTTG+TGG | 0.608644 | 7.1:+57819302 | MS.gene91555:CDS |
| GTGGAATAGTCACTGTTGCA+TGG | 0.616465 | 7.1:+57819321 | MS.gene91555:CDS |
| CTGCTGTTAGTAGTACTGCA+TGG | 0.630929 | 7.1:-57819137 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAACATAAAAAAG+AGG | - | chr7.1:57818782-57818801 | None:intergenic | 10.0% |
| !! | AAAATAATAATTAAGCTAAA+TGG | - | chr7.1:57819212-57819231 | None:intergenic | 10.0% |
| !! | AATAAATATATTGAATTGAA+TGG | - | chr7.1:57817277-57817296 | None:intergenic | 10.0% |
| !! | TAATAATATCATAAAAACAA+TGG | - | chr7.1:57817055-57817074 | None:intergenic | 10.0% |
| !!! | TTATCATTTTAAAATTTTTG+AGG | + | chr7.1:57817994-57818013 | MS.gene91555:intron | 10.0% |
| !! | AAAAAATATGAATTTATTGG+TGG | + | chr7.1:57818556-57818575 | MS.gene91555:intron | 15.0% |
| !! | AAAAACATTAAACTATCATA+TGG | + | chr7.1:57817621-57817640 | MS.gene91555:intron | 15.0% |
| !! | CAATTTAACATGAATAATAA+AGG | - | chr7.1:57817302-57817321 | None:intergenic | 15.0% |
| !! | GCAAAAAAATATGAATTTAT+TGG | + | chr7.1:57818553-57818572 | MS.gene91555:intron | 15.0% |
| !! | TAAAAGTCAAAAAGAAAAAA+AGG | + | chr7.1:57818038-57818057 | MS.gene91555:intron | 15.0% |
| !! | TAATTGTTAAAAATTTCAAG+TGG | + | chr7.1:57818341-57818360 | MS.gene91555:intron | 15.0% |
| !! | TATCAAAAAGATAGTTAAAT+AGG | - | chr7.1:57818164-57818183 | None:intergenic | 15.0% |
| !! | TTAAACATGAACAAAAATAA+GGG | - | chr7.1:57819039-57819058 | None:intergenic | 15.0% |
| !! | TTATATTATATGAATGAACT+CGG | + | chr7.1:57817549-57817568 | MS.gene91555:intron | 15.0% |
| !! | TTTAAACATGAACAAAAATA+AGG | - | chr7.1:57819040-57819059 | None:intergenic | 15.0% |
| !!! | AGTAATTTTTTCTTGTAAAT+AGG | - | chr7.1:57817802-57817821 | None:intergenic | 15.0% |
| !!! | TACAAGAAAAAATTACTTTT+TGG | + | chr7.1:57817805-57817824 | MS.gene91555:intron | 15.0% |
| !!! | TTGTTTCTTATAAATAAGAT+CGG | + | chr7.1:57817904-57817923 | MS.gene91555:intron | 15.0% |
| !!! | TTTTATTTTTTTGAACATTC+AGG | - | chr7.1:57818408-57818427 | None:intergenic | 15.0% |
| !! | ATAATTAAGCTAAATGGTAA+AGG | - | chr7.1:57819206-57819225 | None:intergenic | 20.0% |
| !! | ATATCATAAAAACAATGGTA+AGG | - | chr7.1:57817050-57817069 | None:intergenic | 20.0% |
| !! | CAACAATATAGAGATAAATA+CGG | + | chr7.1:57817221-57817240 | MS.gene91555:CDS | 20.0% |
| !! | GGATTAAAATAAGGTATAAT+AGG | + | chr7.1:57818577-57818596 | MS.gene91555:intron | 20.0% |
| !! | TAAACATGAACAAAAATAAG+GGG | - | chr7.1:57819038-57819057 | None:intergenic | 20.0% |
| !!! | CAAAATTTTGTTACAAACAA+TGG | + | chr7.1:57818291-57818310 | MS.gene91555:intron | 20.0% |
| !!! | CCTTTTTAAATGTCTTTTTA+GGG | + | chr7.1:57818126-57818145 | MS.gene91555:intron | 20.0% |
| !!! | CTTTTTAAATGTCTTTTTAG+GGG | + | chr7.1:57818127-57818146 | MS.gene91555:intron | 20.0% |
| !!! | TCCTTTTTAAATGTCTTTTT+AGG | + | chr7.1:57818125-57818144 | MS.gene91555:intron | 20.0% |
| !!! | TTTATTGGTGGATTAAAATA+AGG | + | chr7.1:57818568-57818587 | MS.gene91555:intron | 20.0% |
| !!! | TTTTGAATTTTGATGCATTA+TGG | + | chr7.1:57819444-57819463 | MS.gene91555:intron | 20.0% |
| ! | AATTATGTTGTGAAAATAGG+CGG | + | chr7.1:57820026-57820045 | MS.gene91555:intron | 25.0% |
| ! | ACATAAGAGTAATTGACAAA+TGG | - | chr7.1:57818198-57818217 | None:intergenic | 25.0% |
| ! | ACCAATTATGTTGTGAAAAT+AGG | + | chr7.1:57820023-57820042 | MS.gene91555:intron | 25.0% |
| ! | ACTTATCTATTAACTCTTCT+TGG | - | chr7.1:57818319-57818338 | None:intergenic | 25.0% |
| ! | AGAGTAAATTTAATAGTGTG+AGG | + | chr7.1:57818093-57818112 | MS.gene91555:intron | 25.0% |
| ! | CCCTAAAAAGACATTTAAAA+AGG | - | chr7.1:57818129-57818148 | None:intergenic | 25.0% |
| ! | GTTTGATGGGATTAATTAAA+AGG | + | chr7.1:57817731-57817750 | MS.gene91555:intron | 25.0% |
| ! | TAACATCATAGATTGCAATT+TGG | - | chr7.1:57819173-57819192 | None:intergenic | 25.0% |
| !! | AAAGTATCTAAAATTGCTTG+TGG | + | chr7.1:57819302-57819321 | MS.gene91555:CDS | 25.0% |
| !! | AAGCAATTTTAGATACTTTC+TGG | - | chr7.1:57819301-57819320 | None:intergenic | 25.0% |
| !! | AGTCTTTAGTTCATGTTAAA+GGG | + | chr7.1:57818683-57818702 | MS.gene91555:intron | 25.0% |
| !! | TAGTCTTTAGTTCATGTTAA+AGG | + | chr7.1:57818682-57818701 | MS.gene91555:intron | 25.0% |
| !! | TATCATTCAAGTTTCTATGA+CGG | + | chr7.1:57819525-57819544 | MS.gene91555:CDS | 25.0% |
| !! | TTTTGATGCATTATGGTTTA+TGG | + | chr7.1:57819451-57819470 | MS.gene91555:intron | 25.0% |
| !! | TTTTGTATACACTCGTAATT+TGG | + | chr7.1:57817360-57817379 | MS.gene91555:intron | 25.0% |
| !!! | AAAGACAATTGTTTGTTATG+AGG | + | chr7.1:57818425-57818444 | MS.gene91555:intron | 25.0% |
| !!! | AAATTCCATCTTTGTTTTTC+AGG | + | chr7.1:57820231-57820250 | MS.gene91555:intron | 25.0% |
| !!! | AAGACAATTGTTTGTTATGA+GGG | + | chr7.1:57818426-57818445 | MS.gene91555:intron | 25.0% |
| !!! | TTTGTTGGTCAATTAGTTTT+TGG | + | chr7.1:57816967-57816986 | MS.gene91555:CDS | 25.0% |
| !!! | TTTTTTTAAAGTGTCCCAAT+AGG | + | chr7.1:57818796-57818815 | MS.gene91555:intron | 25.0% |
| AAAATTCACAAACCTCTTTC+TGG | - | chr7.1:57817247-57817266 | None:intergenic | 30.0% | |
| AAGAACCTGAAAAACAAAGA+TGG | - | chr7.1:57820239-57820258 | None:intergenic | 30.0% | |
| AATAAGAAAATGACGTGTCA+CGG | + | chr7.1:57817682-57817701 | MS.gene91555:intron | 30.0% | |
| ACATAATTGGTTAAGATGGA+TGG | - | chr7.1:57820014-57820033 | None:intergenic | 30.0% | |
| ATATTAGTGACCTTGATCAA+TGG | - | chr7.1:57820154-57820173 | None:intergenic | 30.0% | |
| ATCACATTCTTTAACATTGC+AGG | + | chr7.1:57820398-57820417 | MS.gene91555:intron | 30.0% | |
| ATGACTTGAGGTCTTAAAAT+TGG | - | chr7.1:57818750-57818769 | None:intergenic | 30.0% | |
| ATGTCTCTTATGAAGCTTTA+GGG | + | chr7.1:57816931-57816950 | MS.gene91555:CDS | 30.0% | |
| CACAACATAATTGGTTAAGA+TGG | - | chr7.1:57820018-57820037 | None:intergenic | 30.0% | |
| CAGGATATAACACATAATGT+TGG | - | chr7.1:57820455-57820474 | None:intergenic | 30.0% | |
| GCTAACTTCAGAACAAAAAA+TGG | - | chr7.1:57819992-57820011 | None:intergenic | 30.0% | |
| GTAAATTTAATAGTGTGAGG+AGG | + | chr7.1:57818096-57818115 | MS.gene91555:intron | 30.0% | |
| GTTAAACATGTCATTAGCTA+TGG | + | chr7.1:57818988-57819007 | MS.gene91555:intron | 30.0% | |
| TCACAGTAACAAACAATTGT+CGG | - | chr7.1:57818500-57818519 | None:intergenic | 30.0% | |
| TCTCAATTCTCAAACAATGT+AGG | + | chr7.1:57818859-57818878 | MS.gene91555:intron | 30.0% | |
| TGAACTTCTATGGAAACATA+GGG | + | chr7.1:57820262-57820281 | MS.gene91555:CDS | 30.0% | |
| TGATGATAAGCTACGAAATA+CGG | - | chr7.1:57819790-57819809 | None:intergenic | 30.0% | |
| TTAAAATCGATACTAACCTG+AGG | - | chr7.1:57819565-57819584 | None:intergenic | 30.0% | |
| TTTCTTGTAAATAGGATCTC+AGG | - | chr7.1:57817794-57817813 | None:intergenic | 30.0% | |
| ! | CAAACAATGTAGGACTTTTT+AGG | + | chr7.1:57818869-57818888 | MS.gene91555:intron | 30.0% |
| ! | GCACAAACACTTGTTAAATT+AGG | + | chr7.1:57817396-57817415 | MS.gene91555:intron | 30.0% |
| ! | GCCTATTTTCACAACATAAT+TGG | - | chr7.1:57820027-57820046 | None:intergenic | 30.0% |
| ! | GTTTTTGTGTTTGATTAGTG+TGG | + | chr7.1:57817103-57817122 | MS.gene91555:intron | 30.0% |
| !! | TCAATTTCTGAAATGCATGA+TGG | - | chr7.1:57819015-57819034 | None:intergenic | 30.0% |
| !! | TCTAATTTGCGTTTTCTTTC+AGG | - | chr7.1:57820474-57820493 | None:intergenic | 30.0% |
| !! | TTCATGAGAAAAAGTACTGA+TGG | + | chr7.1:57820057-57820076 | MS.gene91555:CDS | 30.0% |
| !!! | AATGGTAAGGTATTGTTTTC+TGG | - | chr7.1:57817037-57817056 | None:intergenic | 30.0% |
| !!! | AGACTTTTTTGTTGTATCTG+AGG | + | chr7.1:57818659-57818678 | MS.gene91555:intron | 30.0% |
| !!! | ATCTTTGTTTTTCAGGTTCT+TGG | + | chr7.1:57820238-57820257 | MS.gene91555:intron | 30.0% |
| !!! | TCTTTGTTTTTCAGGTTCTT+GGG | + | chr7.1:57820239-57820258 | MS.gene91555:intron | 30.0% |
| AAGTGATCTTAAACTTTCGC+AGG | + | chr7.1:57816994-57817013 | MS.gene91555:CDS | 35.0% | |
| AGGTCTTTGAATATGACTTG+AGG | - | chr7.1:57818762-57818781 | None:intergenic | 35.0% | |
| AGTTCATGTTAAAGGGCTAA+AGG | + | chr7.1:57818690-57818709 | MS.gene91555:intron | 35.0% | |
| ATCCAACAATGATACATGTC+AGG | - | chr7.1:57819658-57819677 | None:intergenic | 35.0% | |
| CATAATGTTGGATGATGAAG+AGG | - | chr7.1:57820443-57820462 | None:intergenic | 35.0% | |
| CATGTCTCTTATGAAGCTTT+AGG | + | chr7.1:57816930-57816949 | MS.gene91555:CDS | 35.0% | |
| GACTTGACATTATCAAAGTC+AGG | - | chr7.1:57820504-57820523 | None:intergenic | 35.0% | |
| GGTCGTAAAATATATTCCTC+AGG | + | chr7.1:57819546-57819565 | MS.gene91555:CDS | 35.0% | |
| GTAAATAGGATCTCAGGATA+AGG | - | chr7.1:57817788-57817807 | None:intergenic | 35.0% | |
| GTAATAAGTAGGCGTTTGAT+GGG | + | chr7.1:57817718-57817737 | MS.gene91555:intron | 35.0% | |
| GTGAACTTCTATGGAAACAT+AGG | + | chr7.1:57820261-57820280 | MS.gene91555:CDS | 35.0% | |
| TAATGAGTTCGACAAAATCG+TGG | - | chr7.1:57819932-57819951 | None:intergenic | 35.0% | |
| TATATGAATGAACTCGGATC+TGG | + | chr7.1:57817555-57817574 | MS.gene91555:intron | 35.0% | |
| TCTTAAACTTTCGCAGGAAA+AGG | + | chr7.1:57817000-57817019 | MS.gene91555:CDS | 35.0% | |
| TGATACACTGTTACATACCA+AGG | - | chr7.1:57820301-57820320 | None:intergenic | 35.0% | |
| TTGCATTGCACAATCATCAT+TGG | + | chr7.1:57819369-57819388 | MS.gene91555:CDS | 35.0% | |
| TTGTGTTTGATTAGTGTGGT+TGG | + | chr7.1:57817107-57817126 | MS.gene91555:intron | 35.0% | |
| ! | AACATTCTACTGGACTTTTC+TGG | + | chr7.1:57820093-57820112 | MS.gene91555:CDS | 35.0% |
| ! | CGAAAGTTTAAGATCACTTG+AGG | - | chr7.1:57816993-57817012 | None:intergenic | 35.0% |
| ! | GACAATTGTTTGTTACTGTG+AGG | + | chr7.1:57818499-57818518 | MS.gene91555:intron | 35.0% |
| ! | GACTTTTGTGAAAGTGGAAA+TGG | - | chr7.1:57817647-57817666 | None:intergenic | 35.0% |
| !! | TGAGAAAAAGTACTGATGGA+TGG | + | chr7.1:57820061-57820080 | MS.gene91555:CDS | 35.0% |
| !!! | GGTTTATGGAAGCTTTGTTT+TGG | + | chr7.1:57819465-57819484 | MS.gene91555:intron | 35.0% |
| !!! | TCGATTATTTTTATGCAGCG+TGG | + | chr7.1:57819272-57819291 | MS.gene91555:intron | 35.0% |
| AGATAAATACGGCCAGAAAG+AGG | + | chr7.1:57817232-57817251 | MS.gene91555:CDS | 40.0% | |
| AGGGAAACTATTGCTATCCT+TGG | + | chr7.1:57820281-57820300 | MS.gene91555:CDS | 40.0% | |
| CAAGTCTTCTGATCAGACAT+TGG | + | chr7.1:57820518-57820537 | MS.gene91555:CDS | 40.0% | |
| CGTAATAAGTAGGCGTTTGA+TGG | + | chr7.1:57817717-57817736 | MS.gene91555:intron | 40.0% | |
| CTGGTATCATCTGCAAAAGA+AGG | - | chr7.1:57819089-57819108 | None:intergenic | 40.0% | |
| GAGCGCACGCAAAAAAAAAA+GGG | + | chr7.1:57818448-57818467 | MS.gene91555:intron | 40.0% | |
| GCTATGCAATCCATTGATCA+AGG | + | chr7.1:57820141-57820160 | MS.gene91555:CDS | 40.0% | |
| GCTTCATAAGAGACATGAAG+TGG | - | chr7.1:57816927-57816946 | None:intergenic | 40.0% | |
| GGTAGCAAACTATGCACAAA+TGG | + | chr7.1:57820119-57820138 | MS.gene91555:CDS | 40.0% | |
| GTGCTTATCGAAAAGATGTG+CGG | + | chr7.1:57817581-57817600 | MS.gene91555:intron | 40.0% | |
| TAATTACAAGTGCCCGACAT+CGG | - | chr7.1:57817428-57817447 | None:intergenic | 40.0% | |
| TGCCTGACATGTATCATTGT+TGG | + | chr7.1:57819653-57819672 | MS.gene91555:intron | 40.0% | |
| TGCTATGTGAAGCACATGTA+CGG | - | chr7.1:57817526-57817545 | None:intergenic | 40.0% | |
| TTGCACTTTCTCGACCTATT+GGG | - | chr7.1:57818813-57818832 | None:intergenic | 40.0% | |
| ! | AGGAAGGAAGCGTAATAAGT+AGG | + | chr7.1:57817707-57817726 | MS.gene91555:intron | 40.0% |
| ! | ATTCTACTGGACTTTTCTGG+AGG | + | chr7.1:57820096-57820115 | MS.gene91555:CDS | 40.0% |
| ! | GAGCATTTGGAACATTCTAC+TGG | + | chr7.1:57820083-57820102 | MS.gene91555:CDS | 40.0% |
| ! | TCTTTTGCAGATGATACCAG+TGG | + | chr7.1:57819089-57819108 | MS.gene91555:intron | 40.0% |
| ! | TGCACAATCATCATTGGCTA+TGG | + | chr7.1:57819375-57819394 | MS.gene91555:CDS | 40.0% |
| ! | TTCTACTGGACTTTTCTGGA+GGG | + | chr7.1:57820097-57820116 | MS.gene91555:CDS | 40.0% |
| !! | TCTCTTATGAAGCTTTAGGG+TGG | + | chr7.1:57816934-57816953 | MS.gene91555:CDS | 40.0% |
| !!! | CTCGTTGACTTTTGTGAAAG+TGG | - | chr7.1:57817653-57817672 | None:intergenic | 40.0% |
| !!! | GGTGGTTTGCTTTTGTTTGT+TGG | + | chr7.1:57816952-57816971 | MS.gene91555:CDS | 40.0% |
| AAAGGAACTTGTGTGTGGCT+TGG | + | chr7.1:57818708-57818727 | MS.gene91555:intron | 45.0% | |
| AATTAGGCGTGTTCCGATGT+CGG | + | chr7.1:57817412-57817431 | MS.gene91555:intron | 45.0% | |
| ATCAGTGTTCGTATCGTGTC+CGG | + | chr7.1:57817491-57817510 | MS.gene91555:intron | 45.0% | |
| CTGCTGTTAGTAGTACTGCA+TGG | - | chr7.1:57819140-57819159 | None:intergenic | 45.0% | |
| CTTGCACTTTCTCGACCTAT+TGG | - | chr7.1:57818814-57818833 | None:intergenic | 45.0% | |
| GAAAATGACGTGTCACGGTT+AGG | + | chr7.1:57817687-57817706 | MS.gene91555:intron | 45.0% | |
| GGAGCGCACGCAAAAAAAAA+AGG | + | chr7.1:57818447-57818466 | MS.gene91555:intron | 45.0% | |
| GGTTCTTGGGTGAACTTCTA+TGG | + | chr7.1:57820252-57820271 | MS.gene91555:intron | 45.0% | |
| GTGGAATAGTCACTGTTGCA+TGG | + | chr7.1:57819321-57819340 | MS.gene91555:CDS | 45.0% | |
| TGAGTTCGACAAAATCGTGG+TGG | - | chr7.1:57819929-57819948 | None:intergenic | 45.0% | |
| ! | GTACTGATGGATGGAGCATT+TGG | + | chr7.1:57820070-57820089 | MS.gene91555:CDS | 45.0% |
| !! | TCTACTGGACTTTTCTGGAG+GGG | + | chr7.1:57820098-57820117 | MS.gene91555:CDS | 45.0% |
| !! | AAAAATAACATTAAATTTAT+TGG | + | chr7.1:57818522-57818541 | MS.gene91555:intron | 5.0% |
| !! | AAAATAAAATATAATTACTA+AGG | - | chr7.1:57817956-57817975 | None:intergenic | 5.0% |
| ATGACGTGTCACGGTTAGGA+AGG | + | chr7.1:57817691-57817710 | MS.gene91555:intron | 50.0% | |
| ATTAGGCGTGTTCCGATGTC+GGG | + | chr7.1:57817413-57817432 | MS.gene91555:intron | 50.0% | |
| GGGCTAAAGGAACTTGTGTG+TGG | + | chr7.1:57818703-57818722 | MS.gene91555:intron | 50.0% | |
| GTGAAGCACATGTACGGACA+GGG | - | chr7.1:57817520-57817539 | None:intergenic | 50.0% | |
| TGTGAAGCACATGTACGGAC+AGG | - | chr7.1:57817521-57817540 | None:intergenic | 50.0% | |
| ! | GCAACATCATTTGCTGCCAC+TGG | - | chr7.1:57819108-57819127 | None:intergenic | 50.0% |
| ACATGTACGGACAGGGACAC+CGG | - | chr7.1:57817513-57817532 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 57816903 | 57820554 | 57816903 | ID=MS.gene91555 |
| chr7.1 | mRNA | 57816903 | 57820554 | 57816903 | ID=MS.gene91555.t1;Parent=MS.gene91555 |
| chr7.1 | exon | 57816903 | 57817021 | 57816903 | ID=MS.gene91555.t1.exon1;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57816903 | 57817021 | 57816903 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57817121 | 57817253 | 57817121 | ID=MS.gene91555.t1.exon2;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57817121 | 57817253 | 57817121 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57819099 | 57819188 | 57819099 | ID=MS.gene91555.t1.exon3;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57819099 | 57819188 | 57819099 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57819290 | 57819414 | 57819290 | ID=MS.gene91555.t1.exon4;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57819290 | 57819414 | 57819290 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57819525 | 57819567 | 57819525 | ID=MS.gene91555.t1.exon5;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57819525 | 57819567 | 57819525 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57820045 | 57820162 | 57820045 | ID=MS.gene91555.t1.exon6;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57820045 | 57820162 | 57820045 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57820253 | 57820302 | 57820253 | ID=MS.gene91555.t1.exon7;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57820253 | 57820302 | 57820253 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| chr7.1 | exon | 57820420 | 57820554 | 57820420 | ID=MS.gene91555.t1.exon8;Parent=MS.gene91555.t1 |
| chr7.1 | CDS | 57820420 | 57820554 | 57820420 | ID=cds.MS.gene91555.t1;Parent=MS.gene91555.t1 |
| Gene Sequence |
| Protein sequence |
