AlfalfaGEDB | MS.gene91735

M. sativa cultivar XinJiangDaYe / MS.gene91735

KEGG: K09422
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF13921.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91735.t1	XP_003623127.1	99.7	359	1	0	1	359	1	359	9.20E-178	632.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91735.t1	O80931	51.2	367	155	6	4	350	1	363	5.1e-84	312.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91735.t1	Q0ZGS9	99.7	359	1	0	1	359	1	359	6.7e-178	632.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene91735.t1	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene91735	0.808989	2.36E-50	-1.69E-46
MS.gene050586	MS.gene91735	0.802669	5.03E-49	-1.69E-46
MS.gene055303	MS.gene91735	0.85265	4.02E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91735.t1	MTR_7g061550	99.721	359	1	0	1	359	1	359	0.0	734
MS.gene91735.t1	MTR_0140s0030	39.474	114	67	1	10	123	18	129	5.82e-24	101
MS.gene91735.t1	MTR_0489s0020	39.474	114	67	1	10	123	18	129	5.82e-24	101
MS.gene91735.t1	MTR_2g096380	37.879	132	71	3	10	140	11	132	2.54e-23	97.4
MS.gene91735.t1	MTR_7g017260	45.745	94	51	0	10	103	30	123	3.91e-23	97.8
MS.gene91735.t1	MTR_6g012180	44.330	97	52	1	10	106	17	111	3.93e-23	98.6
MS.gene91735.t1	MTR_7g087130	38.168	131	74	3	10	140	17	140	6.02e-23	98.2
MS.gene91735.t1	MTR_5g029840	45.833	96	50	1	10	105	17	110	1.15e-22	97.4
MS.gene91735.t1	MTR_3g461490	35.000	140	83	3	3	142	10	141	1.49e-22	97.1
MS.gene91735.t1	MTR_3g052430	42.308	104	58	1	10	113	46	147	1.63e-22	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene91735.t1	AT2G37630	67.030	367	97	9	4	350	1	363	6.27e-160	452
MS.gene91735.t1	AT3G47600	38.333	120	72	1	10	129	17	134	2.83e-23	99.4
MS.gene91735.t1	AT5G55020	48.958	96	47	1	10	105	31	124	3.95e-23	100
MS.gene91735.t1	AT5G59780	43.396	106	58	1	10	115	13	116	4.83e-23	96.7
MS.gene91735.t1	AT3G46130	41.071	112	64	1	10	121	14	123	5.50e-23	97.1
MS.gene91735.t1	AT4G26930	45.192	104	55	1	10	113	24	125	7.24e-23	99.0
MS.gene91735.t1	AT2G32460	42.718	103	57	1	10	112	23	123	1.20e-22	99.4
MS.gene91735.t1	AT2G32460	42.718	103	57	1	10	112	11	111	1.23e-22	99.0
MS.gene91735.t1	AT5G14750	38.793	116	62	2	10	118	21	134	2.47e-22	94.0
MS.gene91735.t1	AT1G25340	37.063	143	80	4	10	151	23	156	2.69e-22	95.5

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Find 105 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCCGCGCAAGTTCC+TGG	0.368673	7.2:+38567637	MS.gene91735:CDS
AACAAGTAGGGTGTAGATCA+AGG	0.517136	7.2:+38568415	MS.gene91735:CDS
AACAGTACGGTCCTAGGGAA+TGG	0.540461	7.2:+38567449	MS.gene91735:CDS
AACCTCTTAGCAGTTCGACC+AGG	0.593352	7.2:-38567655	None:intergenic
AAGCAACAAAGAGAAACAAA+AGG	0.507342	7.2:+38567706	MS.gene91735:CDS
AAGCATGGTAATGTCTGAGT+TGG	0.613423	7.2:+38568086	MS.gene91735:CDS
AAGCCGAGTGGAGCTACAGT+TGG	0.601569	7.2:+38568182	MS.gene91735:CDS
AAGCGAAGATAAAAGCTTTG+AGG	0.504104	7.2:+38568250	MS.gene91735:CDS
AAGCGACACACGGGAACAAA+TGG	0.446322	7.2:+38567611	MS.gene91735:CDS
AAGTCGTCGGAGGGAGAAGA+TGG	0.518254	7.2:+38568218	MS.gene91735:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAACAAAGAGAAACAAA+AGG	+	chr7.2:38567706-38567725	MS.gene91735:CDS	30.0%
TGGCTTTCAAATTCAAACAA+CGG	+	chr7.2:38567904-38567923	MS.gene91735:CDS	30.0%
TTTGAATTTGAAAGCCATGA+AGG	-	chr7.2:38567901-38567920	None:intergenic	30.0%
AAGCGAAGATAAAAGCTTTG+AGG	+	chr7.2:38568250-38568269	MS.gene91735:CDS	35.0%
AATATAGGGAACAGTTAGCA+GGG	+	chr7.2:38568310-38568329	MS.gene91735:CDS	35.0%
ACGCAAAATCGTGTTTAGAA+AGG	+	chr7.2:38567512-38567531	MS.gene91735:CDS	35.0%
AGAGAACCTTTCTTAATACC+TGG	-	chr7.2:38567556-38567575	None:intergenic	35.0%
AGCAGAAATTGACTGAACAA+TGG	+	chr7.2:38568358-38568377	MS.gene91735:CDS	35.0%
CAAAATCGTGTTTAGAAAGG+TGG	+	chr7.2:38567515-38567534	MS.gene91735:CDS	35.0%
GCAGAAATTGACTGAACAAT+GGG	+	chr7.2:38568359-38568378	MS.gene91735:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	38567382	38568461	38567382	ID=MS.gene91735
chr7.2	mRNA	38567382	38568461	38567382	ID=MS.gene91735.t1;Parent=MS.gene91735
chr7.2	exon	38567382	38568461	38567382	ID=MS.gene91735.t1.exon1;Parent=MS.gene91735.t1
chr7.2	CDS	38567382	38568461	38567382	ID=cds.MS.gene91735.t1;Parent=MS.gene91735.t1

Gene Sequence

>MS.gene91735

ATGTCGGATATGAAAGATAGGCAGCGTTGGAGAGCGGAAGAGGATGCATTATTACGCGCTTATGTCAAACAGTACGGTCCTAGGGAATGGAACCTCGTGTCTCAGCGCATGAACACGCCTCTTAACAGGGACGCAAAATCGTGTTTAGAAAGGTGGAAGAATTACCTCAAGCCAGGTATTAAGAAAGGTTCTCTCACTGAAGAAGAGCAGCGTCTTGTCATTAGCCTTCAAGCGACACACGGGAACAAATGGAAGAAAATTGCCGCGCAAGTTCCTGGTCGAACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAGAAGCAACAAAGAGAAACAAAAGGTAGTATTAACAGAACCGTCGACCCGATTAACGATAGCAAGTACGAACACATACTCGAAAGTTTTGCCGAGAAACTAGTGAAAGAGAGACCCTCGCCTTCATTTGTCATGGCTGCTTCCAATAGCTCTTATCTTCATACCGATGCACAAGCACCAACACCGGGATTGCTTCCTTCATGGCTTTCAAATTCAAACAACGGCGCACCTGTTAGGCCAAATTCACCATCTGTGACACTTAGCCTATCTCCCTCGACAGTAGCAGCGCCTCCTCCGTGGATGCAGCCTGTACGAGGACCGGACAACGCGCCTCTTGTTCTTGGGAACGTAGCTCCACATGGCGCTGTTCTAAGTTACGGCGAAAGCATGGTAATGTCTGAGTTGGTTGATTGCTGCAAGGAGTTGGAAGAAGTGCATCATGCATTGGCAGCGCACAAGAAAGAGGCGGCATGGAGGTTAAGCCGAGTGGAGCTACAGTTGGAGTCAGAGAAGGCAAGTCGTCGGAGGGAGAAGATGGAGGAAATCGAAGCGAAGATAAAAGCTTTGAGGGAGGAACAAGCAGTTGCTTTGGATAGAATTGAAGGAGAATATAGGGAACAGTTAGCAGGGCTGAGAAGAGATGCTGAAACCAAAGAGCAGAAATTGACTGAACAATGGGCTGCGAAGCATTTGCGCCTTACTAAGTTTCTAGAACAAGTAGGGTGTAGATCAAGGCATGCTGAATCAAATGGAAGATAG

Protein sequence

>MS.gene91735.t1

MSDMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGSINRTVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSYLHTDAQAPTPGLLPSWLSNSNNGAPVRPNSPSVTLSLSPSTVAAPPPWMQPVRGPDNAPLVLGNVAPHGAVLSYGESMVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQAVALDRIEGEYREQLAGLRRDAETKEQKLTEQWAAKHLRLTKFLEQVGCRSRHAESNGR