Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92345.t1 | XP_013453305.1 | 98.9 | 266 | 3 | 0 | 1 | 266 | 51 | 316 | 2.00E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92345.t1 | Q9SUG3 | 74.3 | 268 | 67 | 1 | 3 | 270 | 82 | 347 | 3.6e-114 | 412.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92345.t1 | G7K0Z3 | 98.9 | 266 | 3 | 0 | 1 | 266 | 51 | 316 | 1.4e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene92345 | 0.809401 | 1.93E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene92345 | 0.810101 | 1.36E-50 | -1.69E-46 |
| MS.gene061143 | MS.gene92345 | 0.814812 | 1.27E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92345.t1 | MTR_5g005370 | 98.502 | 267 | 4 | 0 | 1 | 267 | 51 | 317 | 0.0 | 538 |
| MS.gene92345.t1 | MTR_5g005370 | 98.502 | 267 | 4 | 0 | 1 | 267 | 51 | 317 | 0.0 | 536 |
| MS.gene92345.t1 | MTR_5g005370 | 98.502 | 267 | 4 | 0 | 1 | 267 | 16 | 282 | 0.0 | 534 |
| MS.gene92345.t1 | MTR_5g005370 | 98.872 | 266 | 3 | 0 | 1 | 266 | 23 | 288 | 0.0 | 531 |
| MS.gene92345.t1 | MTR_5g005370 | 94.757 | 267 | 3 | 1 | 1 | 267 | 51 | 306 | 0.0 | 507 |
| MS.gene92345.t1 | MTR_1g105930 | 80.597 | 268 | 52 | 0 | 3 | 270 | 72 | 339 | 1.02e-152 | 430 |
| MS.gene92345.t1 | MTR_1g105930 | 80.162 | 247 | 49 | 0 | 24 | 270 | 63 | 309 | 7.38e-139 | 394 |
| MS.gene92345.t1 | MTR_8g066720 | 42.509 | 287 | 143 | 7 | 1 | 272 | 46 | 325 | 2.76e-71 | 224 |
| MS.gene92345.t1 | MTR_4g105690 | 39.700 | 267 | 154 | 3 | 3 | 264 | 49 | 313 | 1.60e-63 | 202 |
| MS.gene92345.t1 | MTR_3g067725 | 27.099 | 262 | 158 | 9 | 23 | 266 | 236 | 482 | 7.32e-18 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92345.t1 | AT4G08170 | 74.254 | 268 | 67 | 1 | 3 | 270 | 82 | 347 | 5.38e-139 | 395 |
| MS.gene92345.t1 | AT4G08170 | 74.118 | 255 | 64 | 1 | 16 | 270 | 7 | 259 | 2.55e-131 | 372 |
| MS.gene92345.t1 | AT4G33770 | 66.418 | 268 | 88 | 1 | 3 | 270 | 29 | 294 | 7.55e-123 | 352 |
| MS.gene92345.t1 | AT4G33770 | 66.418 | 268 | 88 | 1 | 3 | 270 | 122 | 387 | 5.24e-122 | 353 |
| MS.gene92345.t1 | AT4G08170 | 75.000 | 220 | 53 | 1 | 51 | 270 | 1 | 218 | 5.15e-111 | 320 |
| MS.gene92345.t1 | AT4G08170 | 75.000 | 220 | 53 | 1 | 51 | 270 | 1 | 218 | 5.15e-111 | 320 |
| MS.gene92345.t1 | AT4G08170 | 75.000 | 220 | 53 | 1 | 51 | 270 | 1 | 218 | 5.15e-111 | 320 |
| MS.gene92345.t1 | AT4G08170 | 75.000 | 220 | 53 | 1 | 51 | 270 | 1 | 218 | 5.15e-111 | 320 |
| MS.gene92345.t1 | AT4G08170 | 75.000 | 220 | 53 | 1 | 51 | 270 | 1 | 218 | 5.15e-111 | 320 |
| MS.gene92345.t1 | AT4G33770 | 64.091 | 220 | 77 | 1 | 51 | 270 | 1 | 218 | 2.88e-92 | 272 |
| MS.gene92345.t1 | AT5G16760 | 39.927 | 273 | 153 | 4 | 1 | 266 | 48 | 316 | 6.33e-65 | 206 |
| MS.gene92345.t1 | AT2G43980 | 26.446 | 242 | 143 | 7 | 20 | 250 | 248 | 465 | 3.56e-16 | 78.6 |
Find 67 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCCACCAAAACCTTTAT+TGG | 0.171794 | 5.1:+410379 | MS.gene92345:CDS |
| CAAGCTTCACCCGCAATATT+TGG | 0.185898 | 5.1:-410247 | None:intergenic |
| GTTTATGTTTGAAGGATTAC+AGG | 0.302017 | 5.1:+409212 | MS.gene92345:intron |
| ATTGATATCAATTACTTTCC+AGG | 0.307544 | 5.1:+410580 | MS.gene92345:CDS |
| TATTGTTGGCGAAACTATAA+AGG | 0.308980 | 5.1:+410105 | MS.gene92345:CDS |
| TTCTGCAGATGAAGCTGATT+TGG | 0.315924 | 5.1:+410222 | MS.gene92345:CDS |
| AGCCTCTCCAATAAAGGTTT+TGG | 0.327994 | 5.1:-410386 | None:intergenic |
| CTTCAAGAGTTTGTCAATCA+TGG | 0.331239 | 5.1:+409938 | MS.gene92345:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.331829 | 5.1:+410091 | MS.gene92345:CDS |
| CATGAATTGCTGGGTGTTGA+TGG | 0.353479 | 5.1:+410163 | MS.gene92345:CDS |
| CTTGCAAGCCTCTCCAATAA+AGG | 0.363119 | 5.1:-410392 | None:intergenic |
| GCACTCCCATCCACAACTAA+TGG | 0.388274 | 5.1:-409848 | None:intergenic |
| GTTTGATGTTGTCTTGCATA+AGG | 0.402731 | 5.1:+407516 | MS.gene92345:CDS |
| TCCAGCCTTAGTGACTTCAT+AGG | 0.405099 | 5.1:-409502 | None:intergenic |
| CACATGAAACTCTTGGAAAT+CGG | 0.406306 | 5.1:-410192 | None:intergenic |
| AATTCATGTTTGCCGACATT+AGG | 0.424932 | 5.1:-410148 | None:intergenic |
| CCCTATGAAGTCACTAAGGC+TGG | 0.436744 | 5.1:+409501 | MS.gene92345:CDS |
| TATTCTTCACAAGGCTAAGT+AGG | 0.437233 | 5.1:-410813 | None:intergenic |
| TGTTCAACATTGATATGATA+CGG | 0.438246 | 5.1:+410527 | MS.gene92345:CDS |
| TGTCGGCAAACATGAATTGC+TGG | 0.445133 | 5.1:+410153 | MS.gene92345:CDS |
| GATTTGGATCCAAATATTGC+GGG | 0.452610 | 5.1:+410238 | MS.gene92345:CDS |
| CCAGCCTTAGTGACTTCATA+GGG | 0.458632 | 5.1:-409501 | None:intergenic |
| AGCAAGTGCTGAATTGCATC+TGG | 0.465232 | 5.1:-409268 | None:intergenic |
| ATTTGTCATTCCCAGTTGCC+AGG | 0.467034 | 5.1:+407648 | MS.gene92345:intron |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 5.1:-410199 | None:intergenic |
| GGGTCAAGGATGGTTACTTC+GGG | 0.473925 | 5.1:-409244 | None:intergenic |
| ATAAATATGTGTTCATACTC+TGG | 0.483448 | 5.1:-410784 | None:intergenic |
| GCAAAACCATTAGTTGTGGA+TGG | 0.496864 | 5.1:+409842 | MS.gene92345:CDS |
| GAAGAATAAGTGTAAGAAGA+AGG | 0.501173 | 5.1:+410828 | MS.gene92345:CDS |
| AGGGTCAAGGATGGTTACTT+CGG | 0.504894 | 5.1:-409245 | None:intergenic |
| AAGGGACCTCCGTCGTAGAC+TGG | 0.506046 | 5.1:+410412 | MS.gene92345:CDS |
| AATAAGTGTAAGAAGAAGGA+TGG | 0.508168 | 5.1:+410832 | MS.gene92345:CDS |
| GTTCAACATTGATATGATAC+GGG | 0.516800 | 5.1:+410528 | MS.gene92345:CDS |
| CTTTATTGGAGAGGCTTGCA+AGG | 0.518978 | 5.1:+410393 | MS.gene92345:CDS |
| CACCAAAACCTTTATTGGAG+AGG | 0.533281 | 5.1:+410384 | MS.gene92345:CDS |
| AGTTGCAAAACCATTAGTTG+TGG | 0.542877 | 5.1:+409838 | MS.gene92345:intron |
| GGTTGGTGTTCCACAACAGT+TGG | 0.544219 | 5.1:+409446 | MS.gene92345:CDS |
| GCTGGAATGAAGTTACCGTT+AGG | 0.547992 | 5.1:+409519 | MS.gene92345:CDS |
| CAAAACCATTAGTTGTGGAT+GGG | 0.553222 | 5.1:+409843 | MS.gene92345:CDS |
| TCATATCAATGTTGAACAAG+TGG | 0.556715 | 5.1:-410522 | None:intergenic |
| TTATGCAAGACAACATCAAA+CGG | 0.561000 | 5.1:-407514 | None:intergenic |
| TATCCCCTATGAAGTCACTA+AGG | 0.566391 | 5.1:+409497 | MS.gene92345:CDS |
| ATTGATATGATACGGGAACA+TGG | 0.571666 | 5.1:+410535 | MS.gene92345:CDS |
| TGATTTGGATCCAAATATTG+CGG | 0.580725 | 5.1:+410237 | MS.gene92345:CDS |
| AACTCTTGAAGAACAAGTGG+TGG | 0.581060 | 5.1:-409926 | None:intergenic |
| AACGGACCTTGTTCTAACAT+CGG | 0.598617 | 5.1:-407496 | None:intergenic |
| TTGATATGATACGGGAACAT+GGG | 0.599312 | 5.1:+410536 | MS.gene92345:CDS |
| ACAAACTCTTGAAGAACAAG+TGG | 0.601930 | 5.1:-409929 | None:intergenic |
| TTTATTGGAGAGGCTTGCAA+GGG | 0.603132 | 5.1:+410394 | MS.gene92345:CDS |
| CGTTTCTCTCTACCTAATGT+CGG | 0.605707 | 5.1:+410136 | MS.gene92345:CDS |
| TGCATCTGGAGGGTCAAGGA+TGG | 0.607944 | 5.1:-409254 | None:intergenic |
| TCTTACACTTATTCTTCACA+AGG | 0.608848 | 5.1:-410822 | None:intergenic |
| AAGTGCTGAATTGCATCTGG+AGG | 0.621643 | 5.1:-409265 | None:intergenic |
| GATACGGGAACATGGGACAA+AGG | 0.626816 | 5.1:+410543 | MS.gene92345:CDS |
| ACAATCGATGCTACAAAATG+TGG | 0.627393 | 5.1:+409297 | MS.gene92345:CDS |
| CCCAGTTGCCAGGAAAAGAG+TGG | 0.634726 | 5.1:+407658 | MS.gene92345:intron |
| CTAAACTTATCTGACTGCCA+TGG | 0.643124 | 5.1:+409325 | MS.gene92345:CDS |
| GTCGGCAAACATGAATTGCT+GGG | 0.643901 | 5.1:+410154 | MS.gene92345:CDS |
| AGTGCTGAATTGCATCTGGA+GGG | 0.651268 | 5.1:-409264 | None:intergenic |
| AGCATACCAGTCTACGACGG+AGG | 0.652405 | 5.1:-410418 | None:intergenic |
| TTAGTGATAACCAACTGTTG+TGG | 0.664885 | 5.1:-409456 | None:intergenic |
| GCGAAACTATAAAGGTTGTG+AGG | 0.674225 | 5.1:+410113 | MS.gene92345:CDS |
| AGAGTGGTGTGAGATTATCG+AGG | 0.676364 | 5.1:+407674 | MS.gene92345:CDS |
| AACAAGCCGATGTTAGAACA+AGG | 0.679946 | 5.1:+407490 | None:intergenic |
| CAGCCTTAGTGACTTCATAG+GGG | 0.686617 | 5.1:-409500 | None:intergenic |
| GAATTGCATCTGGAGGGTCA+AGG | 0.694453 | 5.1:-409258 | None:intergenic |
| GTAAGCATACCAGTCTACGA+CGG | 0.728858 | 5.1:-410421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAATAAATACCTAA+CGG | - | chr5.1:409537-409556 | None:intergenic | 10.0% |
| !!! | AGCAATTTTTTTTATTTTTT+TGG | - | chr5.1:409043-409062 | None:intergenic | 10.0% |
| !!! | TATCAACTTTTTAATTTTTA+GGG | + | chr5.1:409421-409440 | MS.gene92345:intron | 10.0% |
| !!! | TTATCAACTTTTTAATTTTT+AGG | + | chr5.1:409420-409439 | MS.gene92345:intron | 10.0% |
| !! | ACTATATCTGAAAATTAAAT+TGG | - | chr5.1:409757-409776 | None:intergenic | 15.0% |
| !! | CCATATTTACTAAAATATTA+TGG | + | chr5.1:408602-408621 | MS.gene92345:intron | 15.0% |
| !! | CTATATCTGAAAATTAAATT+GGG | - | chr5.1:409756-409775 | None:intergenic | 15.0% |
| !! | TTAATCTAAATAACATCAAT+AGG | + | chr5.1:407977-407996 | MS.gene92345:intron | 15.0% |
| !!! | AGAATTAGCTTTTTATTTTA+TGG | + | chr5.1:407864-407883 | MS.gene92345:intron | 15.0% |
| !!! | CCATAATATTTTAGTAAATA+TGG | - | chr5.1:408605-408624 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATCTGTTT+GGG | + | chr5.1:410038-410057 | MS.gene92345:intron | 15.0% |
| !! | AGAAGAATACAAAAAGATTA+AGG | - | chr5.1:410012-410031 | None:intergenic | 20.0% |
| !! | CTGATTTCATTATATCTATT+AGG | - | chr5.1:408896-408915 | None:intergenic | 20.0% |
| !! | TAATTCAATTTACCAACATT+AGG | + | chr5.1:409367-409386 | MS.gene92345:intron | 20.0% |
| !! | TTATCTGACAAATATATAAC+AGG | - | chr5.1:409668-409687 | None:intergenic | 20.0% |
| !!! | AACTTTTTAATTTTTAGGGA+AGG | + | chr5.1:409425-409444 | MS.gene92345:intron | 20.0% |
| !!! | AAGTTGATAAATAACACAAA+TGG | - | chr5.1:409410-409429 | None:intergenic | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | + | chr5.1:410091-410110 | MS.gene92345:CDS | 20.0% |
| !!! | CTTTTGTTTTTTAATCTGTT+TGG | + | chr5.1:410037-410056 | MS.gene92345:intron | 20.0% |
| !!! | TAATGTTGGTAAATTGAATT+AGG | - | chr5.1:409368-409387 | None:intergenic | 20.0% |
| !!! | TGGAAAAGTTATAATTCTTT+TGG | + | chr5.1:408622-408641 | MS.gene92345:intron | 20.0% |
| !!! | TTTGTTTTTTAATCTGTTTG+GGG | + | chr5.1:410039-410058 | MS.gene92345:intron | 20.0% |
| ! | AGAAGAACACAAAAAGATTA+AGG | - | chr5.1:409984-410003 | None:intergenic | 25.0% |
| ! | AGTAATGAAAAACCTAATGT+TGG | - | chr5.1:409382-409401 | None:intergenic | 25.0% |
| ! | ATAAATATGTGTTCATACTC+TGG | - | chr5.1:410787-410806 | None:intergenic | 25.0% |
| ! | ATGTAGTAAATAAGTTACCA+TGG | - | chr5.1:409345-409364 | None:intergenic | 25.0% |
| ! | ATTGATATCAATTACTTTCC+AGG | + | chr5.1:410580-410599 | MS.gene92345:CDS | 25.0% |
| ! | TGTTCAACATTGATATGATA+CGG | + | chr5.1:410527-410546 | MS.gene92345:CDS | 25.0% |
| ! | TTAATCATGCTTCTATTACT+TGG | + | chr5.1:408264-408283 | MS.gene92345:intron | 25.0% |
| !! | TAGTCTATGAATTTTGTAAC+TGG | + | chr5.1:409121-409140 | MS.gene92345:intron | 25.0% |
| !! | TATTAGAGAGTTCTGATAAA+TGG | + | chr5.1:408931-408950 | MS.gene92345:intron | 25.0% |
| !! | TGAAATATGTGAGAAGTTTT+TGG | + | chr5.1:408962-408981 | MS.gene92345:intron | 25.0% |
| !!! | TTGTTTTTTAATCTGTTTGG+GGG | + | chr5.1:410040-410059 | MS.gene92345:intron | 25.0% |
| !!! | TTTTAATTTTTAGGGAAGGT+TGG | + | chr5.1:409429-409448 | MS.gene92345:intron | 25.0% |
| !!! | TTTTATTTTATGGCGTAACT+TGG | + | chr5.1:407874-407893 | MS.gene92345:intron | 25.0% |
| !!! | TTTTTTATGCATCAAATCAG+TGG | + | chr5.1:407770-407789 | MS.gene92345:intron | 25.0% |
| AAATGCACTCAGATGATATA+TGG | - | chr5.1:409625-409644 | None:intergenic | 30.0% | |
| AAGTTTGTAGGTAAAATTGC+TGG | - | chr5.1:409188-409207 | None:intergenic | 30.0% | |
| AATAAGTGTAAGAAGAAGGA+TGG | + | chr5.1:410832-410851 | MS.gene92345:CDS | 30.0% | |
| AATATTGACAATGGCAAACT+TGG | + | chr5.1:408526-408545 | MS.gene92345:intron | 30.0% | |
| ACATAAACAGACAAGTTTGT+AGG | - | chr5.1:409200-409219 | None:intergenic | 30.0% | |
| ACTTGTCTGTTTATGTTTGA+AGG | + | chr5.1:409204-409223 | MS.gene92345:intron | 30.0% | |
| AGCATAAAGGAAAGAAAATC+AGG | + | chr5.1:408154-408173 | MS.gene92345:intron | 30.0% | |
| AGTCTTCTCTAATAAGTCTA+AGG | - | chr5.1:408040-408059 | None:intergenic | 30.0% | |
| ATAAAGCTGTTCAACCAATT+TGG | - | chr5.1:410734-410753 | None:intergenic | 30.0% | |
| CTCTAATATTTGTTCCTTTC+AGG | - | chr5.1:408919-408938 | None:intergenic | 30.0% | |
| GAAATATCAACCTATGGAAT+CGG | - | chr5.1:408078-408097 | None:intergenic | 30.0% | |
| GAAGAATAAGTGTAAGAAGA+AGG | + | chr5.1:410828-410847 | MS.gene92345:CDS | 30.0% | |
| GACAACTGTAATATTGACAA+TGG | + | chr5.1:408517-408536 | MS.gene92345:intron | 30.0% | |
| GATTAATAATCCTCAGTTGT+TGG | - | chr5.1:407963-407982 | None:intergenic | 30.0% | |
| GCTGTGAATTAAGTTTGAAA+CGG | + | chr5.1:407804-407823 | MS.gene92345:intron | 30.0% | |
| GTTCAACATTGATATGATAC+GGG | + | chr5.1:410528-410547 | MS.gene92345:CDS | 30.0% | |
| GTTTATGTTTGAAGGATTAC+AGG | + | chr5.1:409212-409231 | MS.gene92345:intron | 30.0% | |
| TAAATAACATCAATAGGCTG+TGG | + | chr5.1:407983-408002 | MS.gene92345:intron | 30.0% | |
| TAGAGGAATAGATCTGATAT+CGG | + | chr5.1:409583-409602 | MS.gene92345:intron | 30.0% | |
| TATAATGAAATCAGCCTGAA+AGG | + | chr5.1:408902-408921 | MS.gene92345:intron | 30.0% | |
| TATTGTTGGCGAAACTATAA+AGG | + | chr5.1:410105-410124 | MS.gene92345:CDS | 30.0% | |
| TCAAACTTAATTCACAGCAT+TGG | - | chr5.1:407802-407821 | None:intergenic | 30.0% | |
| TCATATCAATGTTGAACAAG+TGG | - | chr5.1:410525-410544 | None:intergenic | 30.0% | |
| TCTTACACTTATTCTTCACA+AGG | - | chr5.1:410825-410844 | None:intergenic | 30.0% | |
| TGTTCTCAATATTGAGACAA+TGG | - | chr5.1:408553-408572 | None:intergenic | 30.0% | |
| TTATGCAAGACAACATCAAA+CGG | - | chr5.1:407517-407536 | None:intergenic | 30.0% | |
| TTCTAGTACAATCAGAAAGT+GGG | - | chr5.1:407729-407748 | None:intergenic | 30.0% | |
| ! | ATAATGTCTGTCTTGATTTG+AGG | - | chr5.1:410465-410484 | None:intergenic | 30.0% |
| ! | GCTATAATCGTCAATTTTCA+TGG | + | chr5.1:409717-409736 | MS.gene92345:intron | 30.0% |
| ! | TAGTCTGTGAATTTTGCATT+TGG | + | chr5.1:409156-409175 | MS.gene92345:intron | 30.0% |
| ! | TGATTTGGATCCAAATATTG+CGG | + | chr5.1:410237-410256 | MS.gene92345:CDS | 30.0% |
| ! | TGTGAATTTTGCATTTGGAT+GGG | + | chr5.1:409161-409180 | MS.gene92345:intron | 30.0% |
| ! | TTTCTAGTACAATCAGAAAG+TGG | - | chr5.1:407730-407749 | None:intergenic | 30.0% |
| !! | AAGTAGTCTTCATTTTTGTC+TGG | - | chr5.1:410303-410322 | None:intergenic | 30.0% |
| !!! | AACACTGCGTCATATTTTTT+TGG | - | chr5.1:408332-408351 | None:intergenic | 30.0% |
| !!! | TTATTTTTTTGGCTCGTGAA+AGG | - | chr5.1:409032-409051 | None:intergenic | 30.0% |
| AAGTCAGATAGTCCTAATTC+AGG | - | chr5.1:408101-408120 | None:intergenic | 35.0% | |
| AATTCATGTTTGCCGACATT+AGG | - | chr5.1:410151-410170 | None:intergenic | 35.0% | |
| ACAAACTCTTGAAGAACAAG+TGG | - | chr5.1:409932-409951 | None:intergenic | 35.0% | |
| ACAATCGATGCTACAAAATG+TGG | + | chr5.1:409297-409316 | MS.gene92345:CDS | 35.0% | |
| ACATACGCAATGCTCATAAA+TGG | - | chr5.1:410695-410714 | None:intergenic | 35.0% | |
| ACATCCACCAAAACCTTTAT+TGG | + | chr5.1:410379-410398 | MS.gene92345:CDS | 35.0% | |
| ACCAAGTTTCTTGAAGTACA+TGG | + | chr5.1:408827-408846 | MS.gene92345:intron | 35.0% | |
| AGATTACAGCTTTGCCATAT+TGG | + | chr5.1:409076-409095 | MS.gene92345:intron | 35.0% | |
| AGGGCTGTTCAAATATAGAA+CGG | + | chr5.1:408794-408813 | MS.gene92345:intron | 35.0% | |
| AGTCAGATAGTCCTAATTCA+GGG | - | chr5.1:408100-408119 | None:intergenic | 35.0% | |
| AGTTGCAAAACCATTAGTTG+TGG | + | chr5.1:409838-409857 | MS.gene92345:intron | 35.0% | |
| ATATAGTAGCATCTCTCTTG+TGG | + | chr5.1:409770-409789 | MS.gene92345:intron | 35.0% | |
| ATTGATATGATACGGGAACA+TGG | + | chr5.1:410535-410554 | MS.gene92345:CDS | 35.0% | |
| CAAAACCATTAGTTGTGGAT+GGG | + | chr5.1:409843-409862 | MS.gene92345:CDS | 35.0% | |
| CACATGAAACTCTTGGAAAT+CGG | - | chr5.1:410195-410214 | None:intergenic | 35.0% | |
| CTATTCCTCTAGTGAAAGTA+AGG | - | chr5.1:409574-409593 | None:intergenic | 35.0% | |
| CTTCAAGAGTTTGTCAATCA+TGG | + | chr5.1:409938-409957 | MS.gene92345:CDS | 35.0% | |
| GAAGTATAAGCACAGCATAA+AGG | + | chr5.1:408141-408160 | MS.gene92345:intron | 35.0% | |
| GATTTGGATCCAAATATTGC+GGG | + | chr5.1:410238-410257 | MS.gene92345:CDS | 35.0% | |
| GTTTGATGTTGTCTTGCATA+AGG | + | chr5.1:407516-407535 | MS.gene92345:CDS | 35.0% | |
| TATATTCCATCACACCTCTA+GGG | + | chr5.1:410496-410515 | MS.gene92345:intron | 35.0% | |
| TATTCTTCACAAGGCTAAGT+AGG | - | chr5.1:410816-410835 | None:intergenic | 35.0% | |
| TCTAGTGAAAGTAAGGATCT+CGG | - | chr5.1:409567-409586 | None:intergenic | 35.0% | |
| TGAATTAGGACTATCTGACT+TGG | + | chr5.1:408100-408119 | MS.gene92345:intron | 35.0% | |
| TGCTTACATAGATCTACGAT+GGG | - | chr5.1:408719-408738 | None:intergenic | 35.0% | |
| TTAGTGATAACCAACTGTTG+TGG | - | chr5.1:409459-409478 | None:intergenic | 35.0% | |
| TTATATTCCATCACACCTCT+AGG | + | chr5.1:410495-410514 | MS.gene92345:intron | 35.0% | |
| TTCAAGTATTCCAACAACTG+AGG | + | chr5.1:407950-407969 | MS.gene92345:intron | 35.0% | |
| TTCAGGGAAATATCAACCTA+TGG | - | chr5.1:408084-408103 | None:intergenic | 35.0% | |
| TTGATATGATACGGGAACAT+GGG | + | chr5.1:410536-410555 | MS.gene92345:CDS | 35.0% | |
| TTTATCTTTAACCCTCTGCA+GGG | + | chr5.1:410749-410768 | MS.gene92345:intron | 35.0% | |
| ! | CTGTGAATTTTGCATTTGGA+TGG | + | chr5.1:409160-409179 | MS.gene92345:intron | 35.0% |
| ! | GGTTGATATTTCCCTGAATT+AGG | + | chr5.1:408086-408105 | MS.gene92345:intron | 35.0% |
| ! | GTGAATTAAGTTTGAAACGG+TGG | + | chr5.1:407807-407826 | MS.gene92345:intron | 35.0% |
| ! | GTGAATTTTGCATTTGGATG+GGG | + | chr5.1:409162-409181 | MS.gene92345:intron | 35.0% |
| !! | GACGCAGTGTTTTTAAATAG+CGG | + | chr5.1:408341-408360 | MS.gene92345:intron | 35.0% |
| !!! | TTTTTTAATCTGTTTGGGGG+AGG | + | chr5.1:410043-410062 | MS.gene92345:intron | 35.0% |
| AACTCTTGAAGAACAAGTGG+TGG | - | chr5.1:409929-409948 | None:intergenic | 40.0% | |
| AATTTGCCGTTGTGCCAAAT+TGG | + | chr5.1:410717-410736 | MS.gene92345:intron | 40.0% | |
| ACAGCTTTGCCATATTGGAT+GGG | + | chr5.1:409081-409100 | MS.gene92345:intron | 40.0% | |
| ACCAGTTGAAGTTTCTGTTG+TGG | - | chr5.1:408769-408788 | None:intergenic | 40.0% | |
| CACCAAAACCTTTATTGGAG+AGG | + | chr5.1:410384-410403 | MS.gene92345:CDS | 40.0% | |
| CCAGTTGAAGTTTCTGTTGT+GGG | - | chr5.1:408768-408787 | None:intergenic | 40.0% | |
| CCCTCATCATGAATCATGAT+CGG | + | chr5.1:407910-407929 | MS.gene92345:intron | 40.0% | |
| CCGATCATGATTCATGATGA+GGG | - | chr5.1:407913-407932 | None:intergenic | 40.0% | |
| CGTTTCTCTCTACCTAATGT+CGG | + | chr5.1:410136-410155 | MS.gene92345:CDS | 40.0% | |
| CTAAACTTATCTGACTGCCA+TGG | + | chr5.1:409325-409344 | MS.gene92345:CDS | 40.0% | |
| CTGCTTACATAGATCTACGA+TGG | - | chr5.1:408720-408739 | None:intergenic | 40.0% | |
| CTTTATCTTTAACCCTCTGC+AGG | + | chr5.1:410748-410767 | MS.gene92345:intron | 40.0% | |
| GAGACATTCTTGATCTCATC+AGG | + | chr5.1:408192-408211 | MS.gene92345:intron | 40.0% | |
| GAGATCCTTACTTTCACTAG+AGG | + | chr5.1:409566-409585 | MS.gene92345:intron | 40.0% | |
| GCAAAACCATTAGTTGTGGA+TGG | + | chr5.1:409842-409861 | MS.gene92345:CDS | 40.0% | |
| GCCATGTACTTCAAGAAACT+TGG | - | chr5.1:408831-408850 | None:intergenic | 40.0% | |
| GCGAAACTATAAAGGTTGTG+AGG | + | chr5.1:410113-410132 | MS.gene92345:CDS | 40.0% | |
| GTTCAACCAATTTGGCACAA+CGG | - | chr5.1:410726-410745 | None:intergenic | 40.0% | |
| GTTCTATATTTGAACAGCCC+TGG | - | chr5.1:408795-408814 | None:intergenic | 40.0% | |
| TACAGCTTTGCCATATTGGA+TGG | + | chr5.1:409080-409099 | MS.gene92345:intron | 40.0% | |
| TAGTACAATCAGAAAGTGGG+TGG | - | chr5.1:407726-407745 | None:intergenic | 40.0% | |
| TATCCCCTATGAAGTCACTA+AGG | + | chr5.1:409497-409516 | MS.gene92345:CDS | 40.0% | |
| TCCGATCATGATTCATGATG+AGG | - | chr5.1:407914-407933 | None:intergenic | 40.0% | |
| TGACATAAGTTGTACTTGCC+TGG | - | chr5.1:410601-410620 | None:intergenic | 40.0% | |
| TGGCAAAGCTGTAATCTCAA+AGG | - | chr5.1:409073-409092 | None:intergenic | 40.0% | |
| TGTAACAACAGTGTCACAGT+AGG | - | chr5.1:410357-410376 | None:intergenic | 40.0% | |
| TTCTGCAGATGAAGCTGATT+TGG | + | chr5.1:410222-410241 | MS.gene92345:CDS | 40.0% | |
| TTTATTGGAGAGGCTTGCAA+GGG | + | chr5.1:410394-410413 | MS.gene92345:CDS | 40.0% | |
| ! | AAGTTTGAAACGGTGGTGAA+TGG | + | chr5.1:407814-407833 | MS.gene92345:intron | 40.0% |
| ! | AGCCTCTCCAATAAAGGTTT+TGG | - | chr5.1:410389-410408 | None:intergenic | 40.0% |
| ! | ATTTTTCCATACCCTGCAGA+GGG | - | chr5.1:410763-410782 | None:intergenic | 40.0% |
| !! | CTCTCCAATAAAGGTTTTGG+TGG | - | chr5.1:410386-410405 | None:intergenic | 40.0% |
| AAACTTCAACTGGTACGCCA+GGG | + | chr5.1:408775-408794 | MS.gene92345:intron | 45.0% | |
| AGAGTGGTGTGAGATTATCG+AGG | + | chr5.1:407674-407693 | MS.gene92345:CDS | 45.0% | |
| AGGGTCAAGGATGGTTACTT+CGG | - | chr5.1:409248-409267 | None:intergenic | 45.0% | |
| ATTTGTCATTCCCAGTTGCC+AGG | + | chr5.1:407648-407667 | MS.gene92345:intron | 45.0% | |
| CAAGCTTCACCCGCAATATT+TGG | - | chr5.1:410250-410269 | None:intergenic | 45.0% | |
| CAGCCTTAGTGACTTCATAG+GGG | - | chr5.1:409503-409522 | None:intergenic | 45.0% | |
| CAGCTTTGCCATATTGGATG+GGG | + | chr5.1:409082-409101 | MS.gene92345:intron | 45.0% | |
| CCAGCCTTAGTGACTTCATA+GGG | - | chr5.1:409504-409523 | None:intergenic | 45.0% | |
| CCCACAACAGAAACTTCAAC+TGG | + | chr5.1:408765-408784 | MS.gene92345:intron | 45.0% | |
| CTTGCAAGCCTCTCCAATAA+AGG | - | chr5.1:410395-410414 | None:intergenic | 45.0% | |
| CTTTATTGGAGAGGCTTGCA+AGG | + | chr5.1:410393-410412 | MS.gene92345:CDS | 45.0% | |
| GCTGGAATGAAGTTACCGTT+AGG | + | chr5.1:409519-409538 | MS.gene92345:CDS | 45.0% | |
| GTAAGCATACCAGTCTACGA+CGG | - | chr5.1:410424-410443 | None:intergenic | 45.0% | |
| GTCGGCAAACATGAATTGCT+GGG | + | chr5.1:410154-410173 | MS.gene92345:CDS | 45.0% | |
| GTTTCTGTTGTGGGACAAAG+AGG | - | chr5.1:408759-408778 | None:intergenic | 45.0% | |
| TACAATCAGAAAGTGGGTGG+AGG | - | chr5.1:407723-407742 | None:intergenic | 45.0% | |
| TCCAGCCTTAGTGACTTCAT+AGG | - | chr5.1:409505-409524 | None:intergenic | 45.0% | |
| TGTCGGCAAACATGAATTGC+TGG | + | chr5.1:410153-410172 | MS.gene92345:CDS | 45.0% | |
| TTAATCTGTTTGGGGGAGGT+GGG | + | chr5.1:410047-410066 | MS.gene92345:intron | 45.0% | |
| TTTAATCTGTTTGGGGGAGG+TGG | + | chr5.1:410046-410065 | MS.gene92345:intron | 45.0% | |
| ! | AGTGCTGAATTGCATCTGGA+GGG | - | chr5.1:409267-409286 | None:intergenic | 45.0% |
| ! | ATCTCACACCACTCTTTTCC+TGG | - | chr5.1:407669-407688 | None:intergenic | 45.0% |
| ! | CATTTTTCCATACCCTGCAG+AGG | - | chr5.1:410764-410783 | None:intergenic | 45.0% |
| ! | GGCTGGATAATCTAGTTTGC+TGG | + | chr5.1:407835-407854 | MS.gene92345:intron | 45.0% |
| ! | TGTTTTCTCGCTGTCATCGA+TGG | + | chr5.1:407558-407577 | MS.gene92345:intron | 45.0% |
| !! | AAGTGCTGAATTGCATCTGG+AGG | - | chr5.1:409268-409287 | None:intergenic | 45.0% |
| !! | AGCAAGTGCTGAATTGCATC+TGG | - | chr5.1:409271-409290 | None:intergenic | 45.0% |
| !! | CATGAATTGCTGGGTGTTGA+TGG | + | chr5.1:410163-410182 | MS.gene92345:CDS | 45.0% |
| AATCAGAAAGTGGGTGGAGG+TGG | - | chr5.1:407720-407739 | None:intergenic | 50.0% | |
| ATCACCAGCCCCATCCAATA+TGG | - | chr5.1:409093-409112 | None:intergenic | 50.0% | |
| CAGTCGTGAATCGCAGAAAG+TGG | - | chr5.1:408481-408500 | None:intergenic | 50.0% | |
| CCCTATGAAGTCACTAAGGC+TGG | + | chr5.1:409501-409520 | MS.gene92345:CDS | 50.0% | |
| CTTTAACCCTCTGCAGGGTA+TGG | + | chr5.1:410754-410773 | MS.gene92345:intron | 50.0% | |
| GAAACTTCAACTGGTACGCC+AGG | + | chr5.1:408774-408793 | MS.gene92345:intron | 50.0% | |
| GAACACTGGACAGCTTATGG+AGG | - | chr5.1:408673-408692 | None:intergenic | 50.0% | |
| GAATTGCATCTGGAGGGTCA+AGG | - | chr5.1:409261-409280 | None:intergenic | 50.0% | |
| GATACGGGAACATGGGACAA+AGG | + | chr5.1:410543-410562 | MS.gene92345:CDS | 50.0% | |
| GCACTCCCATCCACAACTAA+TGG | - | chr5.1:409851-409870 | None:intergenic | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | - | chr5.1:410202-410221 | None:intergenic | 50.0% | |
| GGGTCAAGGATGGTTACTTC+GGG | - | chr5.1:409247-409266 | None:intergenic | 50.0% | |
| TAATCTGTTTGGGGGAGGTG+GGG | + | chr5.1:410048-410067 | MS.gene92345:intron | 50.0% | |
| TCGTGAATCGCAGAAAGTGG+TGG | - | chr5.1:408478-408497 | None:intergenic | 50.0% | |
| TGAACAAGTGGAGTCCCTAG+AGG | - | chr5.1:410513-410532 | None:intergenic | 50.0% | |
| TGTCCAGTGTTCGCCATGAT+GGG | + | chr5.1:408681-408700 | MS.gene92345:intron | 50.0% | |
| TTGAAACGGTGGTGAATGGC+TGG | + | chr5.1:407818-407837 | MS.gene92345:intron | 50.0% | |
| TTTGCCATATTGGATGGGGC+TGG | + | chr5.1:409086-409105 | MS.gene92345:intron | 50.0% | |
| ! | ACCACTCTTTTCCTGGCAAC+TGG | - | chr5.1:407662-407681 | None:intergenic | 50.0% |
| ! | CCACTCTTTTCCTGGCAACT+GGG | - | chr5.1:407661-407680 | None:intergenic | 50.0% |
| ! | GGTTGGTGTTCCACAACAGT+TGG | + | chr5.1:409446-409465 | MS.gene92345:CDS | 50.0% |
| !! | AGCAATGCTGCCGATTCCAT+AGG | + | chr5.1:408065-408084 | MS.gene92345:intron | 50.0% |
| ACTGGACAGCTTATGGAGGC+AGG | - | chr5.1:408669-408688 | None:intergenic | 55.0% | |
| AGCATACCAGTCTACGACGG+AGG | - | chr5.1:410421-410440 | None:intergenic | 55.0% | |
| AGCTTATGGAGGCAGGACTG+CGG | - | chr5.1:408662-408681 | None:intergenic | 55.0% | |
| CCCAGTTGCCAGGAAAAGAG+TGG | + | chr5.1:407658-407677 | MS.gene92345:intron | 55.0% | |
| CTGTCCAGTGTTCGCCATGA+TGG | + | chr5.1:408680-408699 | MS.gene92345:intron | 55.0% | |
| GGCGAACACTGGACAGCTTA+TGG | - | chr5.1:408676-408695 | None:intergenic | 55.0% | |
| GTCCAGTGTTCGCCATGATG+GGG | + | chr5.1:408682-408701 | MS.gene92345:intron | 55.0% | |
| TCCAGTGTTCGCCATGATGG+GGG | + | chr5.1:408683-408702 | MS.gene92345:intron | 55.0% | |
| TGCATCTGGAGGGTCAAGGA+TGG | - | chr5.1:409257-409276 | None:intergenic | 55.0% | |
| ! | TGGAGTCCCTAGAGGTGTGA+TGG | - | chr5.1:410505-410524 | None:intergenic | 55.0% |
| AAGGGACCTCCGTCGTAGAC+TGG | + | chr5.1:410412-410431 | MS.gene92345:CDS | 60.0% | |
| ACCCCCATCATGGCGAACAC+TGG | - | chr5.1:408687-408706 | None:intergenic | 60.0% | |
| CAGAAAGTGGGTGGAGGTGG+AGG | - | chr5.1:407717-407736 | None:intergenic | 60.0% | |
| GCTTATGGAGGCAGGACTGC+GGG | - | chr5.1:408661-408680 | None:intergenic | 60.0% | |
| ! | AGTGTTCGCCATGATGGGGG+TGG | + | chr5.1:408686-408705 | MS.gene92345:intron | 60.0% |
| ! | GTGTTCGCCATGATGGGGGT+GGG | + | chr5.1:408687-408706 | MS.gene92345:intron | 60.0% |
| ! | TGTTCGCCATGATGGGGGTG+GGG | + | chr5.1:408688-408707 | MS.gene92345:intron | 60.0% |
| GGAGGTGGGGTTTGCACTGC+AGG | + | chr5.1:410061-410080 | MS.gene92345:intron | 65.0% | |
| GGTGGGGTTTGCACTGCAGG+TGG | + | chr5.1:410064-410083 | MS.gene92345:intron | 65.0% | |
| GTCCGACCCCACCCCCATCA+TGG | - | chr5.1:408697-408716 | None:intergenic | 70.0% | |
| ! | CGCCATGATGGGGGTGGGGT+CGG | + | chr5.1:408692-408711 | MS.gene92345:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 407499 | 410861 | 407499 | ID=MS.gene92345 |
| chr5.1 | mRNA | 407499 | 410861 | 407499 | ID=MS.gene92345.t1;Parent=MS.gene92345 |
| chr5.1 | exon | 407499 | 407537 | 407499 | ID=MS.gene92345.t1.exon1;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 407499 | 407537 | 407499 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 407663 | 407695 | 407663 | ID=MS.gene92345.t1.exon2;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 407663 | 407695 | 407663 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 409226 | 409346 | 409226 | ID=MS.gene92345.t1.exon3;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 409226 | 409346 | 409226 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 409442 | 409540 | 409442 | ID=MS.gene92345.t1.exon4;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 409442 | 409540 | 409442 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 409840 | 409959 | 409840 | ID=MS.gene92345.t1.exon5;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 409840 | 409959 | 409840 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 410083 | 410259 | 410083 | ID=MS.gene92345.t1.exon6;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 410083 | 410259 | 410083 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 410378 | 410433 | 410378 | ID=MS.gene92345.t1.exon7;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 410378 | 410433 | 410378 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 410517 | 410601 | 410517 | ID=MS.gene92345.t1.exon8;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 410517 | 410601 | 410517 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| chr5.1 | exon | 410770 | 410861 | 410770 | ID=MS.gene92345.t1.exon9;Parent=MS.gene92345.t1 |
| chr5.1 | CDS | 410770 | 410861 | 410770 | ID=cds.MS.gene92345.t1;Parent=MS.gene92345.t1 |
| Gene Sequence |
| Protein sequence |
