Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92356.t1 | XP_003610615.1 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 3.00E-203 | 717.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92356.t1 | A9A3L9 | 39.3 | 313 | 172 | 8 | 48 | 353 | 44 | 345 | 1.2e-54 | 215.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92356.t1 | G7K0W5 | 95.8 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 2.2e-203 | 717.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92356 | MS.gene32566 | PPI |
| MS.gene29482 | MS.gene92356 | PPI |
| MS.gene50173 | MS.gene92356 | PPI |
| MS.gene64663 | MS.gene92356 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92356.t1 | MTR_5g005050 | 95.801 | 381 | 10 | 2 | 1 | 376 | 1 | 380 | 0.0 | 748 |
| MS.gene92356.t1 | MTR_5g005050 | 86.877 | 381 | 9 | 3 | 1 | 376 | 1 | 345 | 0.0 | 661 |
| MS.gene92356.t1 | MTR_5g079860 | 40.357 | 280 | 151 | 6 | 82 | 357 | 117 | 384 | 5.14e-55 | 187 |
| MS.gene92356.t1 | MTR_8g064490 | 34.078 | 358 | 193 | 11 | 11 | 353 | 92 | 421 | 3.89e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92356.t1 | AT3G19630 | 71.353 | 377 | 102 | 4 | 1 | 376 | 1 | 372 | 0.0 | 541 |
| MS.gene92356.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 163 | 401 | 1.63e-51 | 177 |
| MS.gene92356.t1 | AT2G39670 | 42.149 | 242 | 133 | 6 | 116 | 353 | 166 | 404 | 1.89e-51 | 177 |
| MS.gene92356.t1 | AT1G60230 | 35.159 | 347 | 186 | 11 | 20 | 353 | 113 | 433 | 5.61e-50 | 174 |
Find 80 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCAGGTTGGATGCAAAA+TGG | 0.233494 | 5.1:+315181 | MS.gene92356:CDS |
| CAAAGTTCATTCCAATTATA+TGG | 0.237394 | 5.1:+314874 | MS.gene92356:CDS |
| AAGAGATGCTTCCATATAAT+TGG | 0.240823 | 5.1:-314885 | None:intergenic |
| ATTCTGTGCAACTGGAAGTA+TGG | 0.286571 | 5.1:+315211 | MS.gene92356:CDS |
| TTGATACCTTTCAACTCTAT+TGG | 0.301051 | 5.1:+316727 | MS.gene92356:CDS |
| CACGGGCAGCAGGCATTATC+TGG | 0.316832 | 5.1:-316290 | None:intergenic |
| TGCTGCCCGTGCTTTCCCTT+TGG | 0.319573 | 5.1:+316302 | MS.gene92356:CDS |
| TTCAAGCTTGATCACAAGTT+TGG | 0.320954 | 5.1:-315054 | None:intergenic |
| GATACTCGTTTGGGTAAATA+TGG | 0.323543 | 5.1:+315113 | MS.gene92356:CDS |
| GACTGTTGTTCGAATATTAT+AGG | 0.343108 | 5.1:-316818 | None:intergenic |
| TACTTTATGTATTTCTTCTC+AGG | 0.346947 | 5.1:+315166 | MS.gene92356:CDS |
| CATATAATTGGAATGAACTT+TGG | 0.355589 | 5.1:-314873 | None:intergenic |
| TATCCGTAATGTTGTCTTCA+TGG | 0.357605 | 5.1:+315301 | MS.gene92356:CDS |
| GAAGAAACAATAATTCTGAT+TGG | 0.377330 | 5.1:+314910 | MS.gene92356:CDS |
| GAATCTGTGCGCATCATGAC+TGG | 0.379358 | 5.1:+315437 | MS.gene92356:CDS |
| TGTCCTCACCCATCTGCTTC+CGG | 0.386591 | 5.1:-316840 | None:intergenic |
| TATGAGATATGATACTCGTT+TGG | 0.402274 | 5.1:+315103 | MS.gene92356:CDS |
| ATTGAATACATAATGCTTGA+TGG | 0.402824 | 5.1:+316472 | MS.gene92356:CDS |
| ATGAGATATGATACTCGTTT+GGG | 0.407618 | 5.1:+315104 | MS.gene92356:CDS |
| GGTTGTAAATTCTGTGCAAC+TGG | 0.417325 | 5.1:+315203 | MS.gene92356:CDS |
| AAGATCTTCTATATCCGTTA+GGG | 0.419980 | 5.1:-316926 | None:intergenic |
| TTATCTGGCAACGGATGTCT+TGG | 0.422082 | 5.1:-316275 | None:intergenic |
| CAAGATCTTCTATATCCGTT+AGG | 0.423990 | 5.1:-316927 | None:intergenic |
| TCTCAGGTTGGATGCAAAAT+GGG | 0.425113 | 5.1:+315182 | MS.gene92356:CDS |
| CATTTCAGTTGTCATTGAAA+AGG | 0.427528 | 5.1:+315465 | MS.gene92356:CDS |
| AAGAAACAATAATTCTGATT+GGG | 0.429002 | 5.1:+314911 | MS.gene92356:CDS |
| TTATGTATTTCTTCTCAGGT+TGG | 0.448424 | 5.1:+315170 | MS.gene92356:CDS |
| AAAGGGAAAGCACGGGCAGC+AGG | 0.451798 | 5.1:-316300 | None:intergenic |
| GAGCAGCATGCCCACCTACT+AGG | 0.453566 | 5.1:+316508 | MS.gene92356:CDS |
| ACAATAATTCTGATTGGGAA+TGG | 0.456253 | 5.1:+314916 | MS.gene92356:CDS |
| TCTCCAGCAGCTTTCCTAGT+AGG | 0.463335 | 5.1:-316522 | None:intergenic |
| CAATAATTCTGATTGGGAAT+GGG | 0.463962 | 5.1:+314917 | MS.gene92356:CDS |
| TGCAAGAATATCAAAGGAAA+AGG | 0.469220 | 5.1:+316343 | MS.gene92356:CDS |
| TTCTGTGCAACTGGAAGTAT+GGG | 0.477827 | 5.1:+315212 | MS.gene92356:CDS |
| CCAGCAGCTTTCCTAGTAGG+TGG | 0.502107 | 5.1:-316519 | None:intergenic |
| TATCTGGCAACGGATGTCTT+GGG | 0.508433 | 5.1:-316274 | None:intergenic |
| ATGAAGAGAAGAAGAGAGAG+GGG | 0.513472 | 5.1:-315000 | None:intergenic |
| AAGTGGTGCGTGCGGACAAT+TGG | 0.513561 | 5.1:+316864 | MS.gene92356:CDS |
| TTTAAAAGTAACTTATCCTC+TGG | 0.519468 | 5.1:+315236 | MS.gene92356:CDS |
| CTTGTGATCAAGCTTGAAAA+CGG | 0.521991 | 5.1:+315059 | MS.gene92356:CDS |
| TGACGTGCCTGGTTTGAACT+TGG | 0.522727 | 5.1:+316230 | MS.gene92356:CDS |
| GCATTTCCGAGAGACTTGTC+AGG | 0.526946 | 5.1:-316898 | None:intergenic |
| AATGAAGAGAAGAAGAGAGA+GGG | 0.528611 | 5.1:-315001 | None:intergenic |
| AAGCTTCATAATGACGTGCC+TGG | 0.529075 | 5.1:+316219 | MS.gene92356:CDS |
| TAAGCTGAAGAAGGCAGAGA+AGG | 0.540953 | 5.1:-314951 | None:intergenic |
| TGGTGCGTGCGGACAATTGG+TGG | 0.546775 | 5.1:+316867 | MS.gene92356:CDS |
| TTACCATGAAGACAACATTA+CGG | 0.556250 | 5.1:-315304 | None:intergenic |
| TGGCAACGGATGTCTTGGGC+TGG | 0.557842 | 5.1:-316270 | None:intergenic |
| CAGCAGCTTTCCTAGTAGGT+GGG | 0.560215 | 5.1:-316518 | None:intergenic |
| CTTCACTGCAAGAATATCAA+AGG | 0.561777 | 5.1:+316337 | MS.gene92356:CDS |
| AACAACAGTCCGGAAGCAGA+TGG | 0.563846 | 5.1:+316831 | MS.gene92356:CDS |
| AACTTACCTGACAAGTCTCT+CGG | 0.568451 | 5.1:+316892 | MS.gene92356:CDS |
| AGTCCGGAAGCAGATGGGTG+AGG | 0.575221 | 5.1:+316837 | MS.gene92356:CDS |
| TGGTGAAATTGTCGAGCAGT+TGG | 0.575340 | 5.1:+315256 | MS.gene92356:CDS |
| GAATGAAGAGAAGAAGAGAG+AGG | 0.577552 | 5.1:-315002 | None:intergenic |
| TATGGTGGTCAACCTCGTCC+TGG | 0.584796 | 5.1:+315131 | MS.gene92356:CDS |
| AATGTACCAATAGAGTTGAA+AGG | 0.587561 | 5.1:-316733 | None:intergenic |
| ATAATATTCGAACAACAGTC+CGG | 0.589378 | 5.1:+316821 | MS.gene92356:CDS |
| AGGAATGAATAAGCTGAAGA+AGG | 0.591039 | 5.1:-314960 | None:intergenic |
| CCACCTACTAGGAAAGCTGC+TGG | 0.593678 | 5.1:+316519 | MS.gene92356:CDS |
| CAGCAGGCATTATCTGGCAA+CGG | 0.603912 | 5.1:-316284 | None:intergenic |
| AAAGTAGCTCTCAGACCACC+AGG | 0.606040 | 5.1:-315149 | None:intergenic |
| ACAACAGTCCGGAAGCAGAT+GGG | 0.608173 | 5.1:+316832 | MS.gene92356:CDS |
| GATCTTCTATATCCGTTAGG+GGG | 0.613539 | 5.1:-316924 | None:intergenic |
| ACAGCAGAATAGTTGTTCAA+AGG | 0.614724 | 5.1:-315410 | None:intergenic |
| AATCTGTGCGCATCATGACT+GGG | 0.616777 | 5.1:+315438 | MS.gene92356:CDS |
| AAGTGACGTTATCAGAAGAG+TGG | 0.616950 | 5.1:-315031 | None:intergenic |
| GCTCTCAGACCACCAGGACG+AGG | 0.621474 | 5.1:-315143 | None:intergenic |
| GAGACTGCCAAGTTCAAACC+AGG | 0.629568 | 5.1:-316237 | None:intergenic |
| TTTGAACAACTATTCTGCTG+TGG | 0.630303 | 5.1:+315412 | MS.gene92356:CDS |
| ACTCGTTTGGGTAAATATGG+TGG | 0.633657 | 5.1:+315116 | MS.gene92356:CDS |
| AGATCTTCTATATCCGTTAG+GGG | 0.635379 | 5.1:-316925 | None:intergenic |
| AAAATCCGATCGGTATTCGA+CGG | 0.647476 | 5.1:+314810 | MS.gene92356:CDS |
| GGTGGTCAACCTCGTCCTGG+TGG | 0.653114 | 5.1:+315134 | MS.gene92356:CDS |
| GCTGCTGGAGACATTTGAAG+TGG | 0.655494 | 5.1:+316534 | MS.gene92356:CDS |
| CGACGCCGTCGAATACCGAT+CGG | 0.667352 | 5.1:-314815 | None:intergenic |
| CAGATGGGTGAGGACATAAG+TGG | 0.670930 | 5.1:+316847 | MS.gene92356:CDS |
| GAGGACATAAGTGGTGCGTG+CGG | 0.673751 | 5.1:+316856 | MS.gene92356:CDS |
| AGTAAGAATGAAAATCCGAT+CGG | 0.681003 | 5.1:+314800 | None:intergenic |
| CTGCTCGACAATTTCACCAG+AGG | 0.696718 | 5.1:-315252 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTCAGAAAATTTTAA+GGG | + | chr5.1:316792-316811 | MS.gene92356:CDS | 10.0% |
| !! | TTAATAAAGAAGATATGATT+TGG | - | chr5.1:315630-315649 | None:intergenic | 15.0% |
| !!! | AAATTTCAGAAAATTTTAAG+GGG | + | chr5.1:316793-316812 | MS.gene92356:CDS | 15.0% |
| !!! | AACTGTTTTTTTTTTATTAC+AGG | + | chr5.1:315376-315395 | MS.gene92356:intron | 15.0% |
| !!! | ACTGTTTTTTTTTTATTACA+GGG | + | chr5.1:315377-315396 | MS.gene92356:intron | 15.0% |
| !!! | CTAAATTTCAGAAAATTTTA+AGG | + | chr5.1:316791-316810 | MS.gene92356:CDS | 15.0% |
| !! | AAGAAACAATAATTCTGATT+GGG | + | chr5.1:314911-314930 | MS.gene92356:CDS | 20.0% |
| !!! | ACATTTTAAAGTTTTTCAAG+TGG | + | chr5.1:315781-315800 | MS.gene92356:intron | 20.0% |
| !!! | AGATAAGTTAATTTTGTGTT+TGG | - | chr5.1:315951-315970 | None:intergenic | 20.0% |
| !!! | ATAAGTTAACTTGCATTAAT+TGG | + | chr5.1:315549-315568 | MS.gene92356:intron | 20.0% |
| !!! | TAAGTTAACTTGCATTAATT+GGG | + | chr5.1:315550-315569 | MS.gene92356:intron | 20.0% |
| !!! | TTTTTTTTATTACAGGGAAT+GGG | + | chr5.1:315383-315402 | MS.gene92356:intron | 20.0% |
| !!! | TTTTTTTTTATTACAGGGAA+TGG | + | chr5.1:315382-315401 | MS.gene92356:intron | 20.0% |
| ! | ATTGAATACATAATGCTTGA+TGG | + | chr5.1:316472-316491 | MS.gene92356:CDS | 25.0% |
| ! | CAAAGTTCATTCCAATTATA+TGG | + | chr5.1:314874-314893 | MS.gene92356:CDS | 25.0% |
| ! | CATATAATTGGAATGAACTT+TGG | - | chr5.1:314876-314895 | None:intergenic | 25.0% |
| ! | GAAGAAACAATAATTCTGAT+TGG | + | chr5.1:314910-314929 | MS.gene92356:CDS | 25.0% |
| ! | TACTTCAAAATTCAAACTTC+AGG | - | chr5.1:316605-316624 | None:intergenic | 25.0% |
| ! | TACTTTATGTATTTCTTCTC+AGG | + | chr5.1:315166-315185 | MS.gene92356:CDS | 25.0% |
| ! | TTTAAAAGTAACTTATCCTC+TGG | + | chr5.1:315236-315255 | MS.gene92356:CDS | 25.0% |
| !! | CATTGTTAAGTCATTTCTTT+TGG | + | chr5.1:316111-316130 | MS.gene92356:intron | 25.0% |
| !! | TTTTGGTAAAAGTTCTTGAA+CGG | + | chr5.1:316128-316147 | MS.gene92356:intron | 25.0% |
| !!! | AGTCAATGGTTGATATTTTA+CGG | - | chr5.1:315504-315523 | None:intergenic | 25.0% |
| !!! | TATACCGATTTTTGAGAATT+CGG | - | chr5.1:314850-314869 | None:intergenic | 25.0% |
| AAGAGATGCTTCCATATAAT+TGG | - | chr5.1:314888-314907 | None:intergenic | 30.0% | |
| AAGATCTTCTATATCCGTTA+GGG | - | chr5.1:316929-316948 | None:intergenic | 30.0% | |
| AATGTACCAATAGAGTTGAA+AGG | - | chr5.1:316736-316755 | None:intergenic | 30.0% | |
| ACAATAATTCTGATTGGGAA+TGG | + | chr5.1:314916-314935 | MS.gene92356:CDS | 30.0% | |
| ATAATATTCGAACAACAGTC+CGG | + | chr5.1:316821-316840 | MS.gene92356:CDS | 30.0% | |
| ATGAGATATGATACTCGTTT+GGG | + | chr5.1:315104-315123 | MS.gene92356:CDS | 30.0% | |
| CAATAATTCTGATTGGGAAT+GGG | + | chr5.1:314917-314936 | MS.gene92356:CDS | 30.0% | |
| CACTCAAATAGTAATTGCTA+TGG | - | chr5.1:315653-315672 | None:intergenic | 30.0% | |
| CATTTCAGTTGTCATTGAAA+AGG | + | chr5.1:315465-315484 | MS.gene92356:CDS | 30.0% | |
| CATTTGCATCTATAATAGGT+TGG | + | chr5.1:316177-316196 | MS.gene92356:intron | 30.0% | |
| GACTGTTGTTCGAATATTAT+AGG | - | chr5.1:316821-316840 | None:intergenic | 30.0% | |
| GGTACATTTGCATCTATAAT+AGG | + | chr5.1:316173-316192 | MS.gene92356:intron | 30.0% | |
| TATGAGATATGATACTCGTT+TGG | + | chr5.1:315103-315122 | MS.gene92356:CDS | 30.0% | |
| TATTGTCTGAATTGTTATGC+AGG | + | chr5.1:316696-316715 | MS.gene92356:intron | 30.0% | |
| TGCAAGAATATCAAAGGAAA+AGG | + | chr5.1:316343-316362 | MS.gene92356:CDS | 30.0% | |
| TTACCATGAAGACAACATTA+CGG | - | chr5.1:315307-315326 | None:intergenic | 30.0% | |
| TTATGTATTTCTTCTCAGGT+TGG | + | chr5.1:315170-315189 | MS.gene92356:CDS | 30.0% | |
| TTGATACCTTTCAACTCTAT+TGG | + | chr5.1:316727-316746 | MS.gene92356:CDS | 30.0% | |
| ! | CATATGAAAAATCCTTTTCC+TGG | - | chr5.1:316007-316026 | None:intergenic | 30.0% |
| ! | CTTTTCAATGACAACTGAAA+TGG | - | chr5.1:315467-315486 | None:intergenic | 30.0% |
| ! | GTGAACAGTTTCAATGATTT+TGG | + | chr5.1:316415-316434 | MS.gene92356:intron | 30.0% |
| ! | TAAAGAAGATATGATTTGGC+TGG | - | chr5.1:315626-315645 | None:intergenic | 30.0% |
| ! | TTGATATTTTACGGTTGAGA+CGG | - | chr5.1:315495-315514 | None:intergenic | 30.0% |
| ! | TTTCCCTTTGGAAAAACTAA+TGG | + | chr5.1:316314-316333 | MS.gene92356:CDS | 30.0% |
| !! | AAGAAATTTCTGGCTTATGA+AGG | + | chr5.1:316151-316170 | MS.gene92356:intron | 30.0% |
| !! | AGAAATTTCTGGCTTATGAA+GGG | + | chr5.1:316152-316171 | MS.gene92356:intron | 30.0% |
| !!! | AAAGTTTTTCAAGTGGTGTT+TGG | + | chr5.1:315788-315807 | MS.gene92356:intron | 30.0% |
| !!! | AAGCCATTAGTTTTTCCAAA+GGG | - | chr5.1:316320-316339 | None:intergenic | 30.0% |
| AATGAAGAGAAGAAGAGAGA+GGG | - | chr5.1:315004-315023 | None:intergenic | 35.0% | |
| ACAGCAGAATAGTTGTTCAA+AGG | - | chr5.1:315413-315432 | None:intergenic | 35.0% | |
| AGATCTTCTATATCCGTTAG+GGG | - | chr5.1:316928-316947 | None:intergenic | 35.0% | |
| AGGAATGAATAAGCTGAAGA+AGG | - | chr5.1:314963-314982 | None:intergenic | 35.0% | |
| ATGCTTGATCATAAGCTCTT+GGG | - | chr5.1:315925-315944 | None:intergenic | 35.0% | |
| CAAGATCTTCTATATCCGTT+AGG | - | chr5.1:316930-316949 | None:intergenic | 35.0% | |
| CGAACCGAATTCTCAAAAAT+CGG | + | chr5.1:314843-314862 | MS.gene92356:CDS | 35.0% | |
| CTTCACTGCAAGAATATCAA+AGG | + | chr5.1:316337-316356 | MS.gene92356:CDS | 35.0% | |
| CTTGTGATCAAGCTTGAAAA+CGG | + | chr5.1:315059-315078 | MS.gene92356:CDS | 35.0% | |
| GATACTCGTTTGGGTAAATA+TGG | + | chr5.1:315113-315132 | MS.gene92356:CDS | 35.0% | |
| TAGAAGACAATGCAAGTCAA+TGG | - | chr5.1:315518-315537 | None:intergenic | 35.0% | |
| TATCCGTAATGTTGTCTTCA+TGG | + | chr5.1:315301-315320 | MS.gene92356:CDS | 35.0% | |
| TCTTGAACGGAAGAAATTTC+TGG | + | chr5.1:316141-316160 | MS.gene92356:intron | 35.0% | |
| TTCAAGCTTGATCACAAGTT+TGG | - | chr5.1:315057-315076 | None:intergenic | 35.0% | |
| TTTGAACAACTATTCTGCTG+TGG | + | chr5.1:315412-315431 | MS.gene92356:CDS | 35.0% | |
| !! | TCTATTGCGAAAGCTAGTTT+TGG | - | chr5.1:315980-315999 | None:intergenic | 35.0% |
| !!! | GAAGCCATTAGTTTTTCCAA+AGG | - | chr5.1:316321-316340 | None:intergenic | 35.0% |
| AAAATCCGATCGGTATTCGA+CGG | + | chr5.1:314810-314829 | MS.gene92356:CDS | 40.0% | |
| AACTTACCTGACAAGTCTCT+CGG | + | chr5.1:316892-316911 | MS.gene92356:CDS | 40.0% | |
| AAGTGACGTTATCAGAAGAG+TGG | - | chr5.1:315034-315053 | None:intergenic | 40.0% | |
| ACTCGTTTGGGTAAATATGG+TGG | + | chr5.1:315116-315135 | MS.gene92356:CDS | 40.0% | |
| AGAATCATGCAGAAGAGCTT+AGG | + | chr5.1:315844-315863 | MS.gene92356:intron | 40.0% | |
| ATGAAGAGAAGAAGAGAGAG+GGG | - | chr5.1:315003-315022 | None:intergenic | 40.0% | |
| ATTCTGTGCAACTGGAAGTA+TGG | + | chr5.1:315211-315230 | MS.gene92356:CDS | 40.0% | |
| CTAGAGTTTGCGACATTAAC+AGG | + | chr5.1:315716-315735 | MS.gene92356:intron | 40.0% | |
| CTGTTAATGTCGCAAACTCT+AGG | - | chr5.1:315718-315737 | None:intergenic | 40.0% | |
| GAATGAAGAGAAGAAGAGAG+AGG | - | chr5.1:315005-315024 | None:intergenic | 40.0% | |
| GATCTTCTATATCCGTTAGG+GGG | - | chr5.1:316927-316946 | None:intergenic | 40.0% | |
| GATGCTTGATCATAAGCTCT+TGG | - | chr5.1:315926-315945 | None:intergenic | 40.0% | |
| GCAATAGAACTTCCAGGAAA+AGG | + | chr5.1:315992-316011 | MS.gene92356:intron | 40.0% | |
| GCTTCTCTATTCTCAACCAA+TGG | + | chr5.1:315890-315909 | MS.gene92356:intron | 40.0% | |
| GGTTGTAAATTCTGTGCAAC+TGG | + | chr5.1:315203-315222 | MS.gene92356:CDS | 40.0% | |
| TGAAATCTGAGAATTCCCTG+AGG | + | chr5.1:315671-315690 | MS.gene92356:intron | 40.0% | |
| TGCGACATTAACAGGTCTTA+GGG | + | chr5.1:315724-315743 | MS.gene92356:intron | 40.0% | |
| TGCTTGATCATAAGCTCTTG+GGG | - | chr5.1:315924-315943 | None:intergenic | 40.0% | |
| TTGCGACATTAACAGGTCTT+AGG | + | chr5.1:315723-315742 | MS.gene92356:intron | 40.0% | |
| TTTAATAGCACTGCGCAACA+AGG | - | chr5.1:316668-316687 | None:intergenic | 40.0% | |
| ! | ACATAATCTGCATTAGCCTC+AGG | - | chr5.1:315690-315709 | None:intergenic | 40.0% |
| ! | CATAATCTGCATTAGCCTCA+GGG | - | chr5.1:315689-315708 | None:intergenic | 40.0% |
| ! | GTTTTTCCAAAGGGAAAGCA+CGG | - | chr5.1:316311-316330 | None:intergenic | 40.0% |
| ! | TTCTGTGCAACTGGAAGTAT+GGG | + | chr5.1:315212-315231 | MS.gene92356:CDS | 40.0% |
| !! | TCTCAGGTTGGATGCAAAAT+GGG | + | chr5.1:315182-315201 | MS.gene92356:CDS | 40.0% |
| !! | TTCTCAGGTTGGATGCAAAA+TGG | + | chr5.1:315181-315200 | MS.gene92356:CDS | 40.0% |
| !! | TTTTTCCAAAGGGAAAGCAC+GGG | - | chr5.1:316310-316329 | None:intergenic | 40.0% |
| !!! | GAGGGGTTTTGAAGTTTGAA+CGG | - | chr5.1:314986-315005 | None:intergenic | 40.0% |
| AAGCTTCATAATGACGTGCC+TGG | + | chr5.1:316219-316238 | MS.gene92356:CDS | 45.0% | |
| AATCTGTGCGCATCATGACT+GGG | + | chr5.1:315438-315457 | MS.gene92356:CDS | 45.0% | |
| CATGCAGAAGAGCTTAGGTT+AGG | + | chr5.1:315849-315868 | MS.gene92356:intron | 45.0% | |
| GCTTTCGCAATAGAACTTCC+AGG | + | chr5.1:315986-316005 | MS.gene92356:intron | 45.0% | |
| TAAGCTGAAGAAGGCAGAGA+AGG | - | chr5.1:314954-314973 | None:intergenic | 45.0% | |
| TATCTGGCAACGGATGTCTT+GGG | - | chr5.1:316277-316296 | None:intergenic | 45.0% | |
| TGGTGAAATTGTCGAGCAGT+TGG | + | chr5.1:315256-315275 | MS.gene92356:CDS | 45.0% | |
| TTATCTGGCAACGGATGTCT+TGG | - | chr5.1:316278-316297 | None:intergenic | 45.0% | |
| !!! | GGGTTTTGAAGTTTGAACGG+AGG | - | chr5.1:314983-315002 | None:intergenic | 45.0% |
| AAAGTAGCTCTCAGACCACC+AGG | - | chr5.1:315152-315171 | None:intergenic | 50.0% | |
| AACAACAGTCCGGAAGCAGA+TGG | + | chr5.1:316831-316850 | MS.gene92356:CDS | 50.0% | |
| ACAACAGTCCGGAAGCAGAT+GGG | + | chr5.1:316832-316851 | MS.gene92356:CDS | 50.0% | |
| CAGATGGGTGAGGACATAAG+TGG | + | chr5.1:316847-316866 | MS.gene92356:CDS | 50.0% | |
| CAGCAGCTTTCCTAGTAGGT+GGG | - | chr5.1:316521-316540 | None:intergenic | 50.0% | |
| CAGCAGGCATTATCTGGCAA+CGG | - | chr5.1:316287-316306 | None:intergenic | 50.0% | |
| CGGAAATGCTAACCCCCTAA+CGG | + | chr5.1:316912-316931 | MS.gene92356:CDS | 50.0% | |
| CTGCTCGACAATTTCACCAG+AGG | - | chr5.1:315255-315274 | None:intergenic | 50.0% | |
| GAATCTGTGCGCATCATGAC+TGG | + | chr5.1:315437-315456 | MS.gene92356:CDS | 50.0% | |
| GAGACTGCCAAGTTCAAACC+AGG | - | chr5.1:316240-316259 | None:intergenic | 50.0% | |
| GCAGAAGAGCTTAGGTTAGG+TGG | + | chr5.1:315852-315871 | MS.gene92356:intron | 50.0% | |
| GCATTTCCGAGAGACTTGTC+AGG | - | chr5.1:316901-316920 | None:intergenic | 50.0% | |
| GCTGCTGGAGACATTTGAAG+TGG | + | chr5.1:316534-316553 | MS.gene92356:CDS | 50.0% | |
| TCTCCAGCAGCTTTCCTAGT+AGG | - | chr5.1:316525-316544 | None:intergenic | 50.0% | |
| TCTTGGGGAAGCTGTTCCAT+TGG | - | chr5.1:315909-315928 | None:intergenic | 50.0% | |
| ! | TGACGTGCCTGGTTTGAACT+TGG | + | chr5.1:316230-316249 | MS.gene92356:CDS | 50.0% |
| AAGTGGTGCGTGCGGACAAT+TGG | + | chr5.1:316864-316883 | MS.gene92356:CDS | 55.0% | |
| CCACCTACTAGGAAAGCTGC+TGG | + | chr5.1:316519-316538 | MS.gene92356:CDS | 55.0% | |
| CCAGCAGCTTTCCTAGTAGG+TGG | - | chr5.1:316522-316541 | None:intergenic | 55.0% | |
| GAGGACATAAGTGGTGCGTG+CGG | + | chr5.1:316856-316875 | MS.gene92356:CDS | 55.0% | |
| TATGGTGGTCAACCTCGTCC+TGG | + | chr5.1:315131-315150 | MS.gene92356:CDS | 55.0% | |
| TGTCCTCACCCATCTGCTTC+CGG | - | chr5.1:316843-316862 | None:intergenic | 55.0% | |
| AGTCCGGAAGCAGATGGGTG+AGG | + | chr5.1:316837-316856 | MS.gene92356:CDS | 60.0% | |
| CACGGGCAGCAGGCATTATC+TGG | - | chr5.1:316293-316312 | None:intergenic | 60.0% | |
| CGACGCCGTCGAATACCGAT+CGG | - | chr5.1:314818-314837 | None:intergenic | 60.0% | |
| GAGCAGCATGCCCACCTACT+AGG | + | chr5.1:316508-316527 | MS.gene92356:CDS | 60.0% | |
| TGCTGCCCGTGCTTTCCCTT+TGG | + | chr5.1:316302-316321 | MS.gene92356:CDS | 60.0% | |
| TGGCAACGGATGTCTTGGGC+TGG | - | chr5.1:316273-316292 | None:intergenic | 60.0% | |
| TGGTGCGTGCGGACAATTGG+TGG | + | chr5.1:316867-316886 | MS.gene92356:CDS | 60.0% | |
| ! | AAAGGGAAAGCACGGGCAGC+AGG | - | chr5.1:316303-316322 | None:intergenic | 60.0% |
| GCTCTCAGACCACCAGGACG+AGG | - | chr5.1:315146-315165 | None:intergenic | 65.0% | |
| GGTGGTCAACCTCGTCCTGG+TGG | + | chr5.1:315134-315153 | MS.gene92356:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 314807 | 316957 | 314807 | ID=MS.gene92356 |
| chr5.1 | mRNA | 314807 | 316957 | 314807 | ID=MS.gene92356.t1;Parent=MS.gene92356 |
| chr5.1 | exon | 314807 | 315322 | 314807 | ID=MS.gene92356.t1.exon1;Parent=MS.gene92356.t1 |
| chr5.1 | CDS | 314807 | 315322 | 314807 | ID=cds.MS.gene92356.t1;Parent=MS.gene92356.t1 |
| chr5.1 | exon | 315398 | 315502 | 315398 | ID=MS.gene92356.t1.exon2;Parent=MS.gene92356.t1 |
| chr5.1 | CDS | 315398 | 315502 | 315398 | ID=cds.MS.gene92356.t1;Parent=MS.gene92356.t1 |
| chr5.1 | exon | 316195 | 316364 | 316195 | ID=MS.gene92356.t1.exon3;Parent=MS.gene92356.t1 |
| chr5.1 | CDS | 316195 | 316364 | 316195 | ID=cds.MS.gene92356.t1;Parent=MS.gene92356.t1 |
| chr5.1 | exon | 316456 | 316555 | 316456 | ID=MS.gene92356.t1.exon4;Parent=MS.gene92356.t1 |
| chr5.1 | CDS | 316456 | 316555 | 316456 | ID=cds.MS.gene92356.t1;Parent=MS.gene92356.t1 |
| chr5.1 | exon | 316718 | 316957 | 316718 | ID=MS.gene92356.t1.exon5;Parent=MS.gene92356.t1 |
| chr5.1 | CDS | 316718 | 316957 | 316718 | ID=cds.MS.gene92356.t1;Parent=MS.gene92356.t1 |
| Gene Sequence |
| Protein sequence |
