Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92491.t1 | XP_003621757.1 | 99.3 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 8.10E-256 | 892.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92491.t1 | Q8LJW3 | 57.4 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 3.3e-141 | 503.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92491.t1 | G7KUS8 | 99.3 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 5.9e-256 | 892.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049293 | MS.gene92491 | -0.811398 | 7.14E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene92491 | 0.806213 | 9.18E-50 | -1.69E-46 |
| MS.gene04984 | MS.gene92491 | 0.814476 | 1.51E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene92491 | -0.804522 | 2.07E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene92491 | 0.819516 | 1.11E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene92491 | 0.82492 | 6.21E-54 | -1.69E-46 |
| MS.gene058182 | MS.gene92491 | 0.800361 | 1.49E-48 | -1.69E-46 |
| MS.gene058435 | MS.gene92491 | 0.803002 | 4.29E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene92491 | 0.80999 | 1.44E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92491.t1 | MTR_7g022470 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| MS.gene92491.t1 | MTR_5g047260 | 58.758 | 451 | 173 | 6 | 4 | 451 | 11 | 451 | 2.53e-180 | 511 |
| MS.gene92491.t1 | MTR_7g028050 | 56.250 | 448 | 184 | 5 | 10 | 451 | 1 | 442 | 1.85e-175 | 499 |
| MS.gene92491.t1 | MTR_3g088885 | 55.012 | 409 | 172 | 5 | 10 | 409 | 9 | 414 | 3.81e-157 | 452 |
| MS.gene92491.t1 | MTR_5g011580 | 51.794 | 446 | 197 | 5 | 12 | 451 | 8 | 441 | 1.78e-153 | 443 |
| MS.gene92491.t1 | MTR_4g101950 | 50.998 | 451 | 193 | 5 | 12 | 451 | 8 | 441 | 8.44e-153 | 441 |
| MS.gene92491.t1 | MTR_1g029520 | 51.852 | 432 | 189 | 8 | 26 | 441 | 254 | 682 | 1.09e-143 | 426 |
| MS.gene92491.t1 | MTR_5g047260 | 57.465 | 355 | 146 | 3 | 4 | 358 | 11 | 360 | 6.24e-141 | 408 |
| MS.gene92491.t1 | MTR_7g028050 | 56.232 | 345 | 139 | 5 | 113 | 451 | 1 | 339 | 3.02e-130 | 380 |
| MS.gene92491.t1 | MTR_5g015170 | 43.662 | 426 | 217 | 6 | 10 | 413 | 9 | 433 | 1.22e-120 | 360 |
| MS.gene92491.t1 | MTR_5g047260 | 57.426 | 303 | 125 | 2 | 4 | 306 | 11 | 309 | 7.84e-119 | 350 |
| MS.gene92491.t1 | MTR_4g097380 | 38.661 | 463 | 261 | 5 | 10 | 449 | 28 | 490 | 2.25e-103 | 317 |
| MS.gene92491.t1 | MTR_1g012740 | 30.769 | 169 | 99 | 4 | 226 | 393 | 17 | 168 | 2.13e-20 | 88.6 |
| MS.gene92491.t1 | MTR_7g102330 | 22.905 | 358 | 240 | 11 | 36 | 371 | 20 | 363 | 6.32e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92491.t1 | AT1G69040 | 57.395 | 453 | 180 | 6 | 7 | 451 | 8 | 455 | 0.0 | 519 |
| MS.gene92491.t1 | AT1G69040 | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.47e-164 | 469 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.47e-164 | 469 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.37e-164 | 469 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.37e-164 | 469 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 1.19e-163 | 469 |
| MS.gene92491.t1 | AT3G01990 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 1.74e-163 | 468 |
| MS.gene92491.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.73e-161 | 462 |
| MS.gene92491.t1 | AT2G03730 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.73e-161 | 462 |
| MS.gene92491.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene92491.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene92491.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene92491.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene92491.t1 | AT1G76990 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.46e-160 | 461 |
| MS.gene92491.t1 | AT1G12420 | 50.667 | 450 | 196 | 8 | 12 | 451 | 8 | 441 | 2.44e-142 | 414 |
| MS.gene92491.t1 | AT5G25320 | 43.763 | 489 | 220 | 11 | 10 | 444 | 9 | 496 | 3.22e-138 | 406 |
| MS.gene92491.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene92491.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.69e-11 | 65.9 |
| MS.gene92491.t1 | AT4G22780 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.51e-134 | 395 |
| MS.gene92491.t1 | AT4G22780 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.69e-11 | 65.9 |
| MS.gene92491.t1 | AT5G25320 | 44.105 | 458 | 203 | 9 | 39 | 444 | 1 | 457 | 7.12e-134 | 394 |
| MS.gene92491.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 17 | 344 | 1.63e-128 | 376 |
| MS.gene92491.t1 | AT3G01990 | 57.057 | 333 | 137 | 4 | 11 | 342 | 3 | 330 | 1.78e-128 | 375 |
| MS.gene92491.t1 | AT3G01990 | 57.622 | 328 | 133 | 4 | 11 | 337 | 17 | 339 | 3.11e-128 | 375 |
| MS.gene92491.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.19e-121 | 362 |
| MS.gene92491.t1 | AT5G65890 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.19e-121 | 362 |
| MS.gene92491.t1 | AT1G12420 | 49.091 | 385 | 170 | 8 | 77 | 451 | 1 | 369 | 1.47e-110 | 331 |
| MS.gene92491.t1 | AT3G01990 | 54.762 | 294 | 125 | 3 | 11 | 302 | 17 | 304 | 3.39e-106 | 318 |
| MS.gene92491.t1 | AT3G01990 | 54.762 | 294 | 125 | 3 | 11 | 302 | 3 | 290 | 6.02e-106 | 317 |
| MS.gene92491.t1 | AT5G25320 | 43.169 | 366 | 169 | 8 | 10 | 337 | 9 | 373 | 4.26e-102 | 309 |
| MS.gene92491.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.27e-102 | 311 |
| MS.gene92491.t1 | AT5G65890 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.27e-102 | 311 |
| MS.gene92491.t1 | AT5G65890 | 43.791 | 306 | 154 | 6 | 120 | 409 | 13 | 316 | 2.82e-83 | 261 |
| MS.gene92491.t1 | AT2G39570 | 23.229 | 353 | 246 | 11 | 37 | 371 | 21 | 366 | 2.51e-11 | 65.9 |
Find 88 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7.3:-77219493 | MS.gene92491:CDS |
| TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7.3:-77219318 | MS.gene92491:CDS |
| TTCACTCTTAACTGGATTTC+CGG | 0.229487 | 7.3:+77216953 | None:intergenic |
| GGTGTAAAGCTCGAACTTTC+CGG | 0.271281 | 7.3:-77217104 | MS.gene92491:CDS |
| TCGATTGTTTCACTCTTAAC+TGG | 0.286946 | 7.3:+77216945 | None:intergenic |
| CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7.3:-77219703 | MS.gene92491:intron |
| CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7.3:+77218535 | None:intergenic |
| GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7.3:-77218225 | MS.gene92491:CDS |
| GAGAGGTTTCTTTACAATCT+AGG | 0.372115 | 7.3:-77216804 | MS.gene92491:CDS |
| AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7.3:+77218177 | None:intergenic |
| CATACAACGATCGAGTTAAC+AGG | 0.410366 | 7.3:-77218606 | MS.gene92491:CDS |
| TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7.3:-77218094 | MS.gene92491:intron |
| AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7.3:+77218573 | None:intergenic |
| CTTTCTGCTTCAGAACTGAT+TGG | 0.421013 | 7.3:+77217528 | None:intergenic |
| TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7.3:-77218596 | MS.gene92491:CDS |
| ATGTGGTAGCGGCTGAAGTC+TGG | 0.426365 | 7.3:-77218524 | MS.gene92491:CDS |
| TCTCTTTACGTGATCTCGTT+AGG | 0.427447 | 7.3:-77216836 | MS.gene92491:CDS |
| CATAGAAAACATTCATGGCT+TGG | 0.432509 | 7.3:+77216988 | None:intergenic |
| TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7.3:-77219317 | MS.gene92491:CDS |
| TACATCACCGACGACACAAC+AGG | 0.443441 | 7.3:-77218471 | MS.gene92491:CDS |
| TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7.3:+77218432 | None:intergenic |
| GATCGGAAGCTACGGACTCT+TGG | 0.452011 | 7.3:+77218666 | None:intergenic |
| TGTCACATAGAAAACATTCA+TGG | 0.454766 | 7.3:+77216983 | None:intergenic |
| TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7.3:-77219274 | MS.gene92491:intron |
| TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7.3:-77218313 | MS.gene92491:CDS |
| CGGGATTATGACATATATGA+TGG | 0.473270 | 7.3:-77218294 | MS.gene92491:CDS |
| AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7.3:+77218419 | None:intergenic |
| ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7.3:-77219500 | MS.gene92491:CDS |
| TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7.3:-77219571 | MS.gene92491:CDS |
| ATAGAAAACATTCATGGCTT+GGG | 0.492504 | 7.3:+77216989 | None:intergenic |
| GCAAAGAGTAATTCACTGCT+TGG | 0.493494 | 7.3:-77217505 | MS.gene92491:CDS |
| ACATGTTATTGTTACCTTGG+TGG | 0.506079 | 7.3:+77219834 | None:intergenic |
| GTACCTCAGAAGTTCGCCTT+CGG | 0.506198 | 7.3:+77217472 | None:intergenic |
| ACTCGCATCTTTAGAGAAAA+CGG | 0.512341 | 7.3:-77217050 | MS.gene92491:CDS |
| AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7.3:-77219507 | MS.gene92491:CDS |
| CATGCTTAAAATCTCCTACT+CGG | 0.515376 | 7.3:-77216872 | MS.gene92491:CDS |
| TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7.3:-77218344 | MS.gene92491:CDS |
| ATGCTTAAAATCTCCTACTC+GGG | 0.524227 | 7.3:-77216871 | MS.gene92491:CDS |
| GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7.3:-77218203 | MS.gene92491:CDS |
| GCTTGGAGGCTGCTGTCCGA+AGG | 0.534469 | 7.3:-77217488 | MS.gene92491:CDS |
| CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7.3:+77218464 | None:intergenic |
| TGCGAGTTACATCAGACAAA+AGG | 0.535705 | 7.3:+77217066 | None:intergenic |
| TTCTCACGGATCGGAAGCTA+CGG | 0.542549 | 7.3:+77218658 | None:intergenic |
| CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7.3:+77218112 | None:intergenic |
| GAGGCTGTCCGAAAAGAGAT+CGG | 0.548441 | 7.3:-77216924 | MS.gene92491:CDS |
| AAGAGTAATTCACTGCTTGG+AGG | 0.549558 | 7.3:-77217502 | MS.gene92491:CDS |
| CGCGCTGAGGTCACGACAAG+AGG | 0.553071 | 7.3:-77217014 | MS.gene92491:CDS |
| CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7.3:-77218535 | MS.gene92491:CDS |
| AGGCTGTCCGAAAAGAGATC+GGG | 0.555702 | 7.3:-77216923 | MS.gene92491:CDS |
| CAATCAGTTCTGAAGCAGAA+AGG | 0.556036 | 7.3:-77217527 | MS.gene92491:CDS |
| TTCTATGTGACAGATGTGTC+CGG | 0.558668 | 7.3:-77216972 | MS.gene92491:CDS |
| CTGGACACACAATTCAAGAA+TGG | 0.562636 | 7.3:-77218505 | MS.gene92491:CDS |
| TTTCAAATTCATCATCAAGA+GGG | 0.563709 | 7.3:+77219877 | None:intergenic |
| CCTCAGCGCGGCAGACTGAA+AGG | 0.576827 | 7.3:+77217027 | None:intergenic |
| AAGGCCAACTCTGTCTTCAC+CGG | 0.577698 | 7.3:+77217085 | None:intergenic |
| GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7.3:-77218341 | MS.gene92491:CDS |
| TGTCCGAAGGCGAACTTCTG+AGG | 0.586828 | 7.3:-77217475 | MS.gene92491:intron |
| ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7.3:-77218314 | MS.gene92491:CDS |
| AAATCTCCTACTCGGGAGAG+TGG | 0.589711 | 7.3:-77216864 | MS.gene92491:CDS |
| ATCTGTCGGTGTTCAAGCTG+CGG | 0.596760 | 7.3:-77218634 | MS.gene92491:CDS |
| AATCTCCTACTCGGGAGAGT+GGG | 0.599463 | 7.3:-77216863 | MS.gene92491:CDS |
| TATTACATAAGGCATGTGGA+TGG | 0.599573 | 7.3:-77217555 | MS.gene92491:CDS |
| TAGATTGTAAAGAAACCTCT+CGG | 0.604791 | 7.3:+77216806 | None:intergenic |
| CCTTTCAGTCTGCCGCGCTG+AGG | 0.608957 | 7.3:-77217027 | MS.gene92491:CDS |
| CTTTCCGGTGAAGACAGAGT+TGG | 0.609309 | 7.3:-77217089 | MS.gene92491:CDS |
| TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7.3:-77218591 | MS.gene92491:CDS |
| CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7.3:-77218111 | MS.gene92491:CDS |
| AATTTCCCACTCTCCCGAGT+AGG | 0.617638 | 7.3:+77216858 | None:intergenic |
| CGACAGATCTTCTCACGGAT+CGG | 0.618439 | 7.3:+77218649 | None:intergenic |
| GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7.3:-77219504 | MS.gene92491:CDS |
| AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7.3:+77218444 | None:intergenic |
| GGAATATTACATAAGGCATG+TGG | 0.628289 | 7.3:-77217559 | MS.gene92491:CDS |
| GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7.3:-77219489 | MS.gene92491:intron |
| GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7.3:+77218424 | None:intergenic |
| AACACCGACAGATCTTCTCA+CGG | 0.646279 | 7.3:+77218644 | None:intergenic |
| CGATCCGTGAGAAGATCTGT+CGG | 0.650412 | 7.3:-77218648 | MS.gene92491:CDS |
| ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7.3:+77218168 | None:intergenic |
| CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7.3:+77218149 | None:intergenic |
| CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7.3:-77218405 | MS.gene92491:CDS |
| ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7.3:-77218129 | MS.gene92491:CDS |
| GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7.3:+77218427 | None:intergenic |
| AGTTAAGAGTGAAACAATCG+AGG | 0.702931 | 7.3:-77216943 | MS.gene92491:CDS |
| GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7.3:-77219582 | MS.gene92491:CDS |
| TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7.3:-77218541 | MS.gene92491:CDS |
| TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7.3:+77218197 | None:intergenic |
| TCGTTAGGTCGAGATCCGAG+AGG | 0.772248 | 7.3:-77216821 | MS.gene92491:CDS |
| CTCTTGTCGTGACCTCAGCG+CGG | 0.773509 | 7.3:+77217015 | None:intergenic |
| TAATTCGTATGAATCCACCA+AGG | 0.787268 | 7.3:-77219848 | MS.gene92491:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATATTTTCTTATTTTAT+CGG | - | chr7.3:77217527-77217546 | MS.gene92491:CDS | 10.0% |
| !!! | TTTAAAATTTAAACCTTATA+AGG | - | chr7.3:77217002-77217021 | MS.gene92491:CDS | 10.0% |
| !! | AAATGAAGAATTATTGTAAA+TGG | + | chr7.3:77217232-77217251 | None:intergenic | 15.0% |
| !! | TTTCTCTCATTAATTATTTA+CGG | - | chr7.3:77219338-77219357 | MS.gene92491:intron | 15.0% |
| !!! | AGAATTTTTTTATATCAAGT+AGG | - | chr7.3:77218805-77218824 | MS.gene92491:intron | 15.0% |
| !!! | ATTTGTTATGATTGTAATTT+AGG | - | chr7.3:77217477-77217496 | MS.gene92491:CDS | 15.0% |
| !! | AAAATGGATAAAATTAGCAA+AGG | + | chr7.3:77218834-77218853 | None:intergenic | 20.0% |
| !! | AATCTTTGATGAATTTCAAA+AGG | - | chr7.3:77217029-77217048 | MS.gene92491:CDS | 20.0% |
| !! | ATCTTTGATGAATTTCAAAA+GGG | - | chr7.3:77217030-77217049 | MS.gene92491:CDS | 20.0% |
| !! | TAGAGTAATATAAACTATCA+TGG | + | chr7.3:77217718-77217737 | None:intergenic | 20.0% |
| !! | TCAAAGATTATAACCTTATA+AGG | + | chr7.3:77217018-77217037 | None:intergenic | 20.0% |
| !!! | AGTTAACTTGTATTTGATAT+AGG | - | chr7.3:77219556-77219575 | MS.gene92491:CDS | 20.0% |
| !!! | CTTTTATATTGTGGTAAAAT+CGG | + | chr7.3:77217678-77217697 | None:intergenic | 20.0% |
| !!! | GATATTTTTAAAATACCGTT+CGG | + | chr7.3:77218717-77218736 | None:intergenic | 20.0% |
| !!! | GTATTTCATTTCAATTTGTT+TGG | - | chr7.3:77219003-77219022 | MS.gene92491:intron | 20.0% |
| !!! | GTTAACTTGTATTTGATATA+GGG | - | chr7.3:77219557-77219576 | MS.gene92491:CDS | 20.0% |
| !!! | TCAATTTTCATCATACTATT+TGG | - | chr7.3:77217765-77217784 | MS.gene92491:intron | 20.0% |
| !!! | TGTTTACTAATAACACTTTT+TGG | - | chr7.3:77217970-77217989 | MS.gene92491:intron | 20.0% |
| !!! | TTGTATGTTTTTGTATTTTG+TGG | - | chr7.3:77216929-77216948 | MS.gene92491:CDS | 20.0% |
| !!! | TTTTACAGGAATATTACATA+AGG | - | chr7.3:77219116-77219135 | MS.gene92491:intron | 20.0% |
| !!! | TTTTTTACTTTTGCTAAAAC+AGG | + | chr7.3:77219257-77219276 | None:intergenic | 20.0% |
| ! | CTTGCATTTATCAATAAAGA+GGG | - | chr7.3:77219410-77219429 | MS.gene92491:intron | 25.0% |
| ! | GAAGAATTATTGTAAATGGT+AGG | + | chr7.3:77217228-77217247 | None:intergenic | 25.0% |
| ! | GTTATTAGTAAACAAAGTTC+TGG | + | chr7.3:77217964-77217983 | None:intergenic | 25.0% |
| ! | TACGCAAATATTAAGAAAAG+AGG | + | chr7.3:77219440-77219459 | None:intergenic | 25.0% |
| ! | TAGATCTGTGTAATATTCAT+CGG | - | chr7.3:77217434-77217453 | MS.gene92491:intron | 25.0% |
| ! | TGCTAAAACAGGTATTAATT+TGG | + | chr7.3:77219246-77219265 | None:intergenic | 25.0% |
| ! | TTAGTTACAAACTAGATACA+AGG | - | chr7.3:77218760-77218779 | MS.gene92491:intron | 25.0% |
| ! | TTCATGTTACTGATCAAAAT+GGG | - | chr7.3:77217365-77217384 | MS.gene92491:intron | 25.0% |
| ! | TTTAATGATAACTTGAGTGA+TGG | + | chr7.3:77219073-77219092 | None:intergenic | 25.0% |
| ! | TTTCAAATTCATCATCAAGA+GGG | + | chr7.3:77216808-77216827 | None:intergenic | 25.0% |
| ! | TTTCATGTTACTGATCAAAA+TGG | - | chr7.3:77217364-77217383 | MS.gene92491:intron | 25.0% |
| ! | TTTGTCACTAAAAATACTGA+TGG | + | chr7.3:77219537-77219556 | None:intergenic | 25.0% |
| !! | AAACAGGTATTAATTTGGAA+CGG | + | chr7.3:77219241-77219260 | None:intergenic | 25.0% |
| !! | TGTGATCAACTTTTATATTG+TGG | + | chr7.3:77217687-77217706 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCATCATCAAG+AGG | + | chr7.3:77216809-77216828 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAATTTTGTGT+AGG | - | chr7.3:77217078-77217097 | MS.gene92491:CDS | 25.0% |
| !!! | AAAAAAAAAAGCACTAGTTC+TGG | + | chr7.3:77217924-77217943 | None:intergenic | 25.0% |
| !!! | AACTAGTGCTTTTTTTTTTG+AGG | - | chr7.3:77217925-77217944 | MS.gene92491:intron | 25.0% |
| AGAACATGTTATTGTTACCT+TGG | + | chr7.3:77216854-77216873 | None:intergenic | 30.0% | |
| AGAGCTTATATTTCATCTGA+TGG | - | chr7.3:77217175-77217194 | MS.gene92491:intron | 30.0% | |
| ATAGAAAACATTCATGGCTT+GGG | + | chr7.3:77219696-77219715 | None:intergenic | 30.0% | |
| ATCAATTGATGTATGCTGAT+CGG | - | chr7.3:77218368-77218387 | MS.gene92491:CDS | 30.0% | |
| ATCATCCTATTCCAATCAAA+AGG | + | chr7.3:77217804-77217823 | None:intergenic | 30.0% | |
| CAAATTCGATCATTCTATCA+GGG | - | chr7.3:77218871-77218890 | MS.gene92491:intron | 30.0% | |
| CAGAACAACAACTTTGATAA+AGG | - | chr7.3:77216979-77216998 | MS.gene92491:CDS | 30.0% | |
| GATGTGTTAGAATGATAAAG+CGG | + | chr7.3:77219297-77219316 | None:intergenic | 30.0% | |
| GCTTGCATTTATCAATAAAG+AGG | - | chr7.3:77219409-77219428 | MS.gene92491:intron | 30.0% | |
| TAGATTGTAAAGAAACCTCT+CGG | + | chr7.3:77219879-77219898 | None:intergenic | 30.0% | |
| TCAAATTCGATCATTCTATC+AGG | - | chr7.3:77218870-77218889 | MS.gene92491:intron | 30.0% | |
| TGTCACATAGAAAACATTCA+TGG | + | chr7.3:77219702-77219721 | None:intergenic | 30.0% | |
| ! | TAATAAACGTGGTAGTTTGT+TGG | - | chr7.3:77217111-77217130 | MS.gene92491:intron | 30.0% |
| ! | TTTAGTCATTGCCTTTTGAT+TGG | - | chr7.3:77217790-77217809 | MS.gene92491:intron | 30.0% |
| !!! | TGTGTTTTGCTTTGTTTTAC+AGG | - | chr7.3:77219102-77219121 | MS.gene92491:intron | 30.0% |
| AAAGAAGATGTTAAGCCGAA+CGG | - | chr7.3:77218699-77218718 | MS.gene92491:intron | 35.0% | |
| AAGCAGAAGATGCTTAATCT+TGG | + | chr7.3:77218266-77218285 | None:intergenic | 35.0% | |
| AAGCATATTTCCATGATTCC+CGG | - | chr7.3:77217581-77217600 | MS.gene92491:intron | 35.0% | |
| ACATGTTATTGTTACCTTGG+TGG | + | chr7.3:77216851-77216870 | None:intergenic | 35.0% | |
| AGAGAAGCTCAAAATAAGTC+AGG | + | chr7.3:77218671-77218690 | None:intergenic | 35.0% | |
| AGTTAAGAGTGAAACAATCG+AGG | - | chr7.3:77219739-77219758 | MS.gene92491:intron | 35.0% | |
| ATGCTTAAAATCTCCTACTC+GGG | - | chr7.3:77219811-77219830 | MS.gene92491:intron | 35.0% | |
| CATAGAAAACATTCATGGCT+TGG | + | chr7.3:77219697-77219716 | None:intergenic | 35.0% | |
| CATGCTTAAAATCTCCTACT+CGG | - | chr7.3:77219810-77219829 | MS.gene92491:intron | 35.0% | |
| CGGGATTATGACATATATGA+TGG | - | chr7.3:77218388-77218407 | MS.gene92491:CDS | 35.0% | |
| GAGAGGTTTCTTTACAATCT+AGG | - | chr7.3:77219878-77219897 | MS.gene92491:CDS | 35.0% | |
| GCTTATATTTCATCTGATGG+TGG | - | chr7.3:77217178-77217197 | MS.gene92491:intron | 35.0% | |
| GGAATATTACATAAGGCATG+TGG | - | chr7.3:77219123-77219142 | MS.gene92491:intron | 35.0% | |
| GTCATTCATGTTCTTGCAAT+TGG | - | chr7.3:77218614-77218633 | MS.gene92491:CDS | 35.0% | |
| TAATTCGTATGAATCCACCA+AGG | - | chr7.3:77216834-77216853 | MS.gene92491:CDS | 35.0% | |
| TATTACATAAGGCATGTGGA+TGG | - | chr7.3:77219127-77219146 | MS.gene92491:intron | 35.0% | |
| TCAATTGATGTATGCTGATC+GGG | - | chr7.3:77218369-77218388 | MS.gene92491:CDS | 35.0% | |
| TCCAAATCAACAGTCGTTTA+AGG | + | chr7.3:77219467-77219486 | None:intergenic | 35.0% | |
| TCGATTGTTTCACTCTTAAC+TGG | + | chr7.3:77219740-77219759 | None:intergenic | 35.0% | |
| TGTAGCTGATAGAATTCAAC+AGG | - | chr7.3:77217408-77217427 | MS.gene92491:intron | 35.0% | |
| TGTGAGTACTACATATGACA+TGG | - | chr7.3:77219488-77219507 | MS.gene92491:intron | 35.0% | |
| TTCACTCTTAACTGGATTTC+CGG | + | chr7.3:77219732-77219751 | None:intergenic | 35.0% | |
| ! | ACCTTAAACGACTGTTGATT+TGG | - | chr7.3:77219463-77219482 | MS.gene92491:intron | 35.0% |
| ! | ACGGTATCGAATAGTAACTT+CGG | + | chr7.3:77218517-77218536 | None:intergenic | 35.0% |
| ! | ACTCGCATCTTTAGAGAAAA+CGG | - | chr7.3:77219632-77219651 | MS.gene92491:intron | 35.0% |
| ! | AGGTATTAATTTGGAACGGA+GGG | + | chr7.3:77219237-77219256 | None:intergenic | 35.0% |
| ! | CGGCTTAACATCTTCTTTTA+AGG | + | chr7.3:77218697-77218716 | None:intergenic | 35.0% |
| !! | ATATTTCATCTGATGGTGGA+TGG | - | chr7.3:77217182-77217201 | MS.gene92491:intron | 35.0% |
| !! | CATTGCCTTTTGATTGGAAT+AGG | - | chr7.3:77217796-77217815 | MS.gene92491:intron | 35.0% |
| !! | GTTGATAGTGCTAATAAACG+TGG | - | chr7.3:77217100-77217119 | MS.gene92491:CDS | 35.0% |
| !! | GTTGATGATTGCATCGATAA+AGG | - | chr7.3:77218457-77218476 | MS.gene92491:CDS | 35.0% |
| AAGAGTAATTCACTGCTTGG+AGG | - | chr7.3:77219180-77219199 | MS.gene92491:intron | 40.0% | |
| AATAGTAACTTCGGTCGATC+TGG | + | chr7.3:77218508-77218527 | None:intergenic | 40.0% | |
| ATGCAGTATGTTGTGTACCA+TGG | - | chr7.3:77218553-77218572 | MS.gene92491:CDS | 40.0% | |
| CAGCAATAAATCGGTCTCAA+AGG | - | chr7.3:77217611-77217630 | MS.gene92491:intron | 40.0% | |
| CATACAACGATCGAGTTAAC+AGG | - | chr7.3:77218076-77218095 | MS.gene92491:intron | 40.0% | |
| CATGTCTGTGATAGTACACA+CGG | + | chr7.3:77218536-77218555 | None:intergenic | 40.0% | |
| CTGGACACACAATTCAAGAA+TGG | - | chr7.3:77218177-77218196 | MS.gene92491:CDS | 40.0% | |
| CTTTCTGCTTCAGAACTGAT+TGG | + | chr7.3:77219157-77219176 | None:intergenic | 40.0% | |
| GAAGATGCTTAATCTTGGCA+AGG | + | chr7.3:77218261-77218280 | None:intergenic | 40.0% | |
| GATATACCGTCGTGAATTTG+AGG | - | chr7.3:77218479-77218498 | MS.gene92491:CDS | 40.0% | |
| GCAAAGAGTAATTCACTGCT+TGG | - | chr7.3:77219177-77219196 | MS.gene92491:intron | 40.0% | |
| TAGAAAGGATGCGTCAGAAT+AGG | + | chr7.3:77219037-77219056 | None:intergenic | 40.0% | |
| TCTCTTTACGTGATCTCGTT+AGG | - | chr7.3:77219846-77219865 | MS.gene92491:intron | 40.0% | |
| TGCGAGTTACATCAGACAAA+AGG | + | chr7.3:77219619-77219638 | None:intergenic | 40.0% | |
| TGTGGTAAAATCGGCAAATG+TGG | + | chr7.3:77217669-77217688 | None:intergenic | 40.0% | |
| TTCTATGTGACAGATGTGTC+CGG | - | chr7.3:77219710-77219729 | MS.gene92491:CDS | 40.0% | |
| TTTGTTCGACTCACAAGGAT+AGG | - | chr7.3:77218338-77218357 | MS.gene92491:CDS | 40.0% | |
| ! | AAGACTTCTGAAAGCAATCC+TGG | + | chr7.3:77218112-77218131 | None:intergenic | 40.0% |
| ! | ATTTTGTGGCAGAGTAACTG+TGG | - | chr7.3:77216943-77216962 | MS.gene92491:CDS | 40.0% |
| ! | CAGGTATTAATTTGGAACGG+AGG | + | chr7.3:77219238-77219257 | None:intergenic | 40.0% |
| ! | CGAGTAGGAGATTTTAAGCA+TGG | + | chr7.3:77219812-77219831 | None:intergenic | 40.0% |
| ! | GTTTTCTTGTTCCAGTCACT+CGG | - | chr7.3:77217992-77218011 | MS.gene92491:intron | 40.0% |
| ! | TAGTCAACCCGATCTCTTTT+CGG | + | chr7.3:77219769-77219788 | None:intergenic | 40.0% |
| ! | TGAAGGAACAGAAGCATATC+AGG | - | chr7.3:77218588-77218607 | MS.gene92491:CDS | 40.0% |
| !! | ATCTGATGGTGGATGGTTTA+TGG | - | chr7.3:77217189-77217208 | MS.gene92491:intron | 40.0% |
| !! | CAATCAGTTCTGAAGCAGAA+AGG | - | chr7.3:77219155-77219174 | MS.gene92491:intron | 40.0% |
| !! | TTCGTTTTGTTCGACTCACA+AGG | - | chr7.3:77218333-77218352 | MS.gene92491:CDS | 40.0% |
| AACACCGACAGATCTTCTCA+CGG | + | chr7.3:77218041-77218060 | None:intergenic | 45.0% | |
| CATGGAACTGTCAATGCTGA+AGG | - | chr7.3:77218571-77218590 | MS.gene92491:CDS | 45.0% | |
| CCTCAAATGCAATGTGGTAG+CGG | - | chr7.3:77218147-77218166 | MS.gene92491:CDS | 45.0% | |
| CGACATCACAACCACAATTG+CGG | - | chr7.3:77217643-77217662 | MS.gene92491:intron | 45.0% | |
| CTTCTGCTTTATGTGCTGAG+AGG | - | chr7.3:77218277-77218296 | MS.gene92491:CDS | 45.0% | |
| GATGCTTAATCTTGGCAAGG+CGG | + | chr7.3:77218258-77218277 | None:intergenic | 45.0% | |
| GGACTCATAAGCTGGTAGAA+AGG | + | chr7.3:77219052-77219071 | None:intergenic | 45.0% | |
| GGTGTAAAGCTCGAACTTTC+CGG | - | chr7.3:77219578-77219597 | MS.gene92491:CDS | 45.0% | |
| TCGAGTTAACAGGACGAGAT+AGG | - | chr7.3:77218086-77218105 | MS.gene92491:intron | 45.0% | |
| TGCAAGCTCGATAATGTCGT+TGG | + | chr7.3:77219396-77219415 | None:intergenic | 45.0% | |
| TGCTGACCTCAAATGCAATG+TGG | - | chr7.3:77218141-77218160 | MS.gene92491:CDS | 45.0% | |
| TGGACACCTCAAATTCACGA+CGG | + | chr7.3:77218488-77218507 | None:intergenic | 45.0% | |
| !! | CTTCAGCATTGACAGTTCCA+TGG | + | chr7.3:77218573-77218592 | None:intergenic | 45.0% |
| !! | GATGGTGGATGGTTTATGGA+TGG | - | chr7.3:77217193-77217212 | MS.gene92491:intron | 45.0% |
| !! | TGAGTGATGGACTCATAAGC+TGG | + | chr7.3:77219060-77219079 | None:intergenic | 45.0% |
| !! | AAAAAATATTAAAAAAACAA+TGG | + | chr7.3:77217275-77217294 | None:intergenic | 5.0% |
| !! | GTTAAATATTAATAATAAAA+TGG | + | chr7.3:77218850-77218869 | None:intergenic | 5.0% |
| AAATCTCCTACTCGGGAGAG+TGG | - | chr7.3:77219818-77219837 | MS.gene92491:intron | 50.0% | |
| AAGGCCAACTCTGTCTTCAC+CGG | + | chr7.3:77219600-77219619 | None:intergenic | 50.0% | |
| AATCTCCTACTCGGGAGAGT+GGG | - | chr7.3:77219819-77219838 | MS.gene92491:intron | 50.0% | |
| AATTTCCCACTCTCCCGAGT+AGG | + | chr7.3:77219827-77219846 | None:intergenic | 50.0% | |
| AGGCTGTCCGAAAAGAGATC+GGG | - | chr7.3:77219759-77219778 | MS.gene92491:intron | 50.0% | |
| CCGCTACCACATTGCATTTG+AGG | + | chr7.3:77218150-77218169 | None:intergenic | 50.0% | |
| CGACAGATCTTCTCACGGAT+CGG | + | chr7.3:77218036-77218055 | None:intergenic | 50.0% | |
| CGATCCGTGAGAAGATCTGT+CGG | - | chr7.3:77218034-77218053 | MS.gene92491:intron | 50.0% | |
| CTTTCCGGTGAAGACAGAGT+TGG | - | chr7.3:77219593-77219612 | MS.gene92491:intron | 50.0% | |
| GAGGCTGTCCGAAAAGAGAT+CGG | - | chr7.3:77219758-77219777 | MS.gene92491:intron | 50.0% | |
| GTACCTCAGAAGTTCGCCTT+CGG | + | chr7.3:77219213-77219232 | None:intergenic | 50.0% | |
| GTTCGACTCACAAGGATAGG+AGG | - | chr7.3:77218341-77218360 | MS.gene92491:CDS | 50.0% | |
| TACATCACCGACGACACAAC+AGG | - | chr7.3:77218211-77218230 | MS.gene92491:CDS | 50.0% | |
| TTAACAGGACGAGATAGGCC+AGG | - | chr7.3:77218091-77218110 | MS.gene92491:intron | 50.0% | |
| TTAATCTTGGCAAGGCGGTC+AGG | + | chr7.3:77218253-77218272 | None:intergenic | 50.0% | |
| TTCTCACGGATCGGAAGCTA+CGG | + | chr7.3:77218027-77218046 | None:intergenic | 50.0% | |
| ! | AGACCGATTTATTGCTGCCG+CGG | + | chr7.3:77217608-77217627 | None:intergenic | 50.0% |
| ! | ATCTGTCGGTGTTCAAGCTG+CGG | - | chr7.3:77218048-77218067 | MS.gene92491:intron | 50.0% |
| AGGCGGTCAGGATTGTCGAT+CGG | + | chr7.3:77218241-77218260 | None:intergenic | 55.0% | |
| ATTTATTGCTGCCGCGGACC+GGG | + | chr7.3:77217602-77217621 | None:intergenic | 55.0% | |
| CGGCAATCCTGTTGTGTCGT+CGG | + | chr7.3:77218221-77218240 | None:intergenic | 55.0% | |
| GATCGGAAGCTACGGACTCT+TGG | + | chr7.3:77218019-77218038 | None:intergenic | 55.0% | |
| GATTTATTGCTGCCGCGGAC+CGG | + | chr7.3:77217603-77217622 | None:intergenic | 55.0% | |
| GGCAAATGTGGCCGCAATTG+TGG | + | chr7.3:77217657-77217676 | None:intergenic | 55.0% | |
| GGTCCGCGGCAGCAATAAAT+CGG | - | chr7.3:77217602-77217621 | MS.gene92491:intron | 55.0% | |
| TCGTTAGGTCGAGATCCGAG+AGG | - | chr7.3:77219861-77219880 | MS.gene92491:CDS | 55.0% | |
| TGTCCGAAGGCGAACTTCTG+AGG | - | chr7.3:77219207-77219226 | MS.gene92491:intron | 55.0% | |
| TTTCCATGATTCCCGGTCCG+CGG | - | chr7.3:77217588-77217607 | MS.gene92491:intron | 55.0% | |
| !! | ATGTGGTAGCGGCTGAAGTC+TGG | - | chr7.3:77218158-77218177 | MS.gene92491:CDS | 55.0% |
| CTCTTGTCGTGACCTCAGCG+CGG | + | chr7.3:77219670-77219689 | None:intergenic | 60.0% | |
| GGACTCTTGGACCGAGTGAC+TGG | + | chr7.3:77218006-77218025 | None:intergenic | 60.0% | |
| CCTCAGCGCGGCAGACTGAA+AGG | + | chr7.3:77219658-77219677 | None:intergenic | 65.0% | |
| CCTTTCAGTCTGCCGCGCTG+AGG | - | chr7.3:77219655-77219674 | MS.gene92491:intron | 65.0% | |
| CGCGCTGAGGTCACGACAAG+AGG | - | chr7.3:77219668-77219687 | MS.gene92491:intron | 65.0% | |
| GCTTGGAGGCTGCTGTCCGA+AGG | - | chr7.3:77219194-77219213 | MS.gene92491:intron | 65.0% | |
| CTGCCGCGGACCGGGAATCA+TGG | + | chr7.3:77217594-77217613 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 77216782 | 77219922 | 77216782 | ID=MS.gene92491 |
| chr7.3 | mRNA | 77216782 | 77219922 | 77216782 | ID=MS.gene92491.t1;Parent=MS.gene92491 |
| chr7.3 | exon | 77219849 | 77219922 | 77219849 | ID=MS.gene92491.t1.exon1;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77219849 | 77219922 | 77219849 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77219704 | 77219749 | 77219704 | ID=MS.gene92491.t1.exon2;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77219704 | 77219749 | 77219704 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77219490 | 77219604 | 77219490 | ID=MS.gene92491.t1.exon3;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77219490 | 77219604 | 77219490 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77219275 | 77219342 | 77219275 | ID=MS.gene92491.t1.exon4;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77219275 | 77219342 | 77219275 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77218095 | 77218697 | 77218095 | ID=MS.gene92491.t1.exon5;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77218095 | 77218697 | 77218095 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77217476 | 77217580 | 77217476 | ID=MS.gene92491.t1.exon6;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77217476 | 77217580 | 77217476 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| chr7.3 | exon | 77216782 | 77217126 | 77216782 | ID=MS.gene92491.t1.exon7;Parent=MS.gene92491.t1 |
| chr7.3 | CDS | 77216782 | 77217126 | 77216782 | ID=cds.MS.gene92491.t1;Parent=MS.gene92491.t1 |
| Gene Sequence |
| Protein sequence |
