Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92654.t1 | KEH33683.1 | 91.9 | 345 | 28 | 0 | 2 | 346 | 144 | 488 | 5.60E-180 | 640.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92654.t1 | Q8VYR4 | 37.2 | 325 | 185 | 4 | 24 | 346 | 235 | 542 | 2.9e-60 | 233.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92654.t1 | A0A072UX81 | 91.9 | 345 | 28 | 0 | 2 | 346 | 144 | 488 | 4.0e-180 | 640.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051138 | MS.gene92654 | 0.816814 | 4.55E-52 | -1.69E-46 |
MS.gene055942 | MS.gene92654 | 0.80373 | 3.03E-49 | -1.69E-46 |
MS.gene056856 | MS.gene92654 | 0.835336 | 1.78E-56 | -1.69E-46 |
MS.gene058099 | MS.gene92654 | 0.830482 | 2.86E-55 | -1.69E-46 |
MS.gene058603 | MS.gene92654 | 0.831881 | 1.30E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92654.t1 | MTR_3g450800 | 94.493 | 345 | 19 | 0 | 2 | 346 | 144 | 488 | 0.0 | 677 |
MS.gene92654.t1 | MTR_0011s0020 | 82.319 | 345 | 61 | 0 | 2 | 346 | 193 | 537 | 0.0 | 606 |
MS.gene92654.t1 | MTR_2g037830 | 80.580 | 345 | 67 | 0 | 2 | 346 | 193 | 537 | 0.0 | 601 |
MS.gene92654.t1 | MTR_3g005560 | 73.333 | 345 | 92 | 0 | 2 | 346 | 193 | 537 | 0.0 | 528 |
MS.gene92654.t1 | MTR_3g005560 | 73.333 | 345 | 92 | 0 | 2 | 346 | 193 | 537 | 0.0 | 527 |
MS.gene92654.t1 | MTR_2g037830 | 82.500 | 280 | 49 | 0 | 2 | 281 | 193 | 472 | 1.81e-173 | 493 |
MS.gene92654.t1 | MTR_3g005560 | 75.546 | 229 | 56 | 0 | 2 | 230 | 193 | 421 | 4.70e-117 | 345 |
MS.gene92654.t1 | MTR_4g088225 | 42.978 | 356 | 190 | 3 | 1 | 346 | 206 | 558 | 1.19e-96 | 302 |
MS.gene92654.t1 | MTR_4g088225 | 42.978 | 356 | 190 | 3 | 1 | 346 | 206 | 558 | 1.85e-96 | 302 |
MS.gene92654.t1 | MTR_1g073740 | 41.573 | 356 | 193 | 6 | 1 | 346 | 207 | 557 | 2.12e-88 | 281 |
MS.gene92654.t1 | MTR_3g060220 | 35.065 | 308 | 186 | 3 | 39 | 346 | 258 | 551 | 5.01e-60 | 205 |
MS.gene92654.t1 | MTR_3g060220 | 35.065 | 308 | 186 | 3 | 39 | 346 | 257 | 550 | 5.54e-60 | 205 |
MS.gene92654.t1 | MTR_3g060280 | 32.075 | 371 | 206 | 5 | 3 | 346 | 205 | 556 | 7.41e-59 | 199 |
MS.gene92654.t1 | MTR_3g060240 | 34.516 | 310 | 185 | 3 | 39 | 346 | 258 | 551 | 8.13e-59 | 202 |
MS.gene92654.t1 | MTR_3g060280 | 35.065 | 308 | 181 | 2 | 39 | 346 | 268 | 556 | 8.41e-59 | 199 |
MS.gene92654.t1 | MTR_2g087900 | 34.118 | 340 | 203 | 5 | 25 | 345 | 234 | 571 | 2.83e-58 | 198 |
MS.gene92654.t1 | MTR_3g060280 | 32.075 | 371 | 206 | 5 | 3 | 346 | 205 | 556 | 1.08e-57 | 199 |
MS.gene92654.t1 | MTR_2g087900 | 34.118 | 340 | 203 | 5 | 25 | 345 | 234 | 571 | 3.42e-57 | 198 |
MS.gene92654.t1 | MTR_4g130510 | 31.383 | 376 | 200 | 6 | 25 | 345 | 472 | 844 | 1.28e-56 | 197 |
MS.gene92654.t1 | MTR_8g063270 | 32.320 | 362 | 202 | 6 | 25 | 345 | 221 | 580 | 2.57e-56 | 196 |
MS.gene92654.t1 | MTR_4g130510 | 31.383 | 376 | 200 | 6 | 25 | 345 | 472 | 844 | 3.00e-56 | 197 |
MS.gene92654.t1 | MTR_8g063270 | 32.320 | 362 | 202 | 6 | 25 | 345 | 426 | 785 | 7.44e-56 | 196 |
MS.gene92654.t1 | MTR_8g086600 | 29.474 | 380 | 208 | 5 | 25 | 345 | 417 | 795 | 7.82e-55 | 193 |
MS.gene92654.t1 | MTR_2g016630 | 29.688 | 384 | 205 | 6 | 25 | 345 | 402 | 783 | 5.78e-54 | 191 |
MS.gene92654.t1 | MTR_1g069605 | 30.811 | 370 | 205 | 6 | 25 | 345 | 332 | 699 | 1.65e-51 | 183 |
MS.gene92654.t1 | MTR_2g087980 | 30.833 | 360 | 235 | 6 | 1 | 346 | 199 | 558 | 1.94e-51 | 182 |
MS.gene92654.t1 | MTR_2g087960 | 30.303 | 363 | 236 | 6 | 1 | 346 | 206 | 568 | 2.70e-51 | 179 |
MS.gene92654.t1 | MTR_4g130510 | 28.780 | 410 | 200 | 7 | 25 | 345 | 472 | 878 | 3.24e-50 | 180 |
MS.gene92654.t1 | MTR_2g087960 | 30.303 | 363 | 236 | 6 | 1 | 346 | 206 | 568 | 3.74e-50 | 178 |
MS.gene92654.t1 | MTR_2g087950 | 31.845 | 336 | 215 | 4 | 25 | 346 | 229 | 564 | 4.92e-50 | 178 |
MS.gene92654.t1 | MTR_4g050000 | 32.036 | 334 | 214 | 7 | 25 | 346 | 228 | 560 | 7.66e-49 | 175 |
MS.gene92654.t1 | MTR_1g039445 | 29.396 | 364 | 200 | 8 | 29 | 344 | 548 | 902 | 7.56e-44 | 162 |
MS.gene92654.t1 | MTR_4g077910 | 29.894 | 378 | 197 | 8 | 25 | 344 | 574 | 941 | 2.25e-43 | 160 |
MS.gene92654.t1 | MTR_5g029190 | 28.219 | 365 | 192 | 7 | 39 | 344 | 567 | 920 | 7.14e-43 | 159 |
MS.gene92654.t1 | MTR_1g039480 | 28.861 | 395 | 202 | 10 | 15 | 344 | 550 | 930 | 8.26e-43 | 159 |
MS.gene92654.t1 | MTR_2g438220 | 28.532 | 361 | 193 | 8 | 38 | 344 | 474 | 823 | 1.87e-42 | 157 |
MS.gene92654.t1 | MTR_2g087900 | 35.537 | 242 | 135 | 5 | 25 | 248 | 234 | 472 | 4.32e-38 | 142 |
MS.gene92654.t1 | MTR_4g130510 | 31.538 | 260 | 122 | 5 | 25 | 231 | 472 | 728 | 5.74e-34 | 132 |
MS.gene92654.t1 | MTR_1g098550 | 40.764 | 157 | 84 | 2 | 23 | 170 | 510 | 666 | 9.57e-34 | 132 |
MS.gene92654.t1 | MTR_1g098550 | 30.058 | 173 | 118 | 2 | 175 | 346 | 734 | 904 | 9.97e-21 | 94.0 |
MS.gene92654.t1 | MTR_1g098550 | 40.764 | 157 | 84 | 2 | 23 | 170 | 506 | 662 | 1.04e-33 | 132 |
MS.gene92654.t1 | MTR_1g098550 | 30.058 | 173 | 118 | 2 | 175 | 346 | 730 | 900 | 9.16e-21 | 94.0 |
MS.gene92654.t1 | MTR_3g060280 | 37.129 | 202 | 105 | 3 | 39 | 237 | 268 | 450 | 1.04e-33 | 129 |
MS.gene92654.t1 | MTR_8g037260 | 39.744 | 156 | 86 | 1 | 23 | 170 | 490 | 645 | 3.28e-33 | 130 |
MS.gene92654.t1 | MTR_8g037260 | 30.814 | 172 | 116 | 2 | 176 | 346 | 715 | 884 | 2.96e-23 | 101 |
MS.gene92654.t1 | MTR_2g035780 | 40.411 | 146 | 79 | 1 | 25 | 162 | 443 | 588 | 4.44e-33 | 130 |
MS.gene92654.t1 | MTR_2g035780 | 30.178 | 169 | 115 | 2 | 178 | 345 | 684 | 850 | 3.71e-21 | 95.1 |
MS.gene92654.t1 | MTR_3g030040 | 40.411 | 146 | 79 | 1 | 25 | 162 | 492 | 637 | 1.13e-32 | 129 |
MS.gene92654.t1 | MTR_3g030040 | 31.214 | 173 | 116 | 2 | 175 | 346 | 714 | 884 | 9.86e-24 | 102 |
MS.gene92654.t1 | MTR_7g106680 | 40.541 | 148 | 80 | 1 | 23 | 162 | 448 | 595 | 1.89e-32 | 128 |
MS.gene92654.t1 | MTR_7g106680 | 31.737 | 167 | 111 | 2 | 181 | 346 | 674 | 838 | 1.16e-22 | 99.8 |
MS.gene92654.t1 | MTR_7g116230 | 30.314 | 287 | 145 | 5 | 25 | 257 | 395 | 680 | 2.96e-32 | 127 |
MS.gene92654.t1 | MTR_8g092590 | 38.217 | 157 | 88 | 2 | 23 | 170 | 508 | 664 | 5.36e-31 | 124 |
MS.gene92654.t1 | MTR_8g092590 | 31.214 | 173 | 116 | 2 | 175 | 346 | 733 | 903 | 1.90e-22 | 99.0 |
MS.gene92654.t1 | MTR_3g107520 | 41.096 | 146 | 78 | 1 | 25 | 162 | 502 | 647 | 9.64e-30 | 120 |
MS.gene92654.t1 | MTR_3g107520 | 27.841 | 176 | 112 | 3 | 178 | 346 | 725 | 892 | 1.19e-18 | 87.8 |
MS.gene92654.t1 | MTR_3g007770 | 37.580 | 157 | 89 | 2 | 23 | 170 | 457 | 613 | 1.60e-29 | 120 |
MS.gene92654.t1 | MTR_3g007770 | 27.746 | 173 | 110 | 3 | 181 | 346 | 688 | 852 | 1.25e-18 | 87.8 |
MS.gene92654.t1 | MTR_2g087900 | 43.636 | 110 | 58 | 1 | 25 | 130 | 234 | 343 | 8.87e-27 | 108 |
MS.gene92654.t1 | MTR_7g109200 | 37.584 | 149 | 92 | 1 | 25 | 173 | 597 | 744 | 1.10e-26 | 111 |
MS.gene92654.t1 | MTR_7g109200 | 28.947 | 152 | 92 | 3 | 208 | 343 | 839 | 990 | 1.27e-13 | 72.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene92654.t1 | AT4G24000 | 36.145 | 332 | 191 | 4 | 17 | 346 | 38 | 350 | 4.99e-75 | 241 |
MS.gene92654.t1 | AT4G24000 | 37.349 | 332 | 187 | 5 | 17 | 346 | 230 | 542 | 1.77e-73 | 241 |
MS.gene92654.t1 | AT4G24010 | 38.554 | 332 | 178 | 5 | 24 | 346 | 238 | 552 | 8.77e-73 | 240 |
MS.gene92654.t1 | AT4G23990 | 35.103 | 339 | 192 | 4 | 17 | 346 | 38 | 357 | 4.43e-70 | 228 |
MS.gene92654.t1 | AT4G23990 | 35.693 | 339 | 190 | 5 | 17 | 346 | 252 | 571 | 1.83e-68 | 228 |
MS.gene92654.t1 | AT1G55850 | 33.642 | 324 | 185 | 4 | 28 | 346 | 250 | 548 | 4.32e-60 | 205 |
MS.gene92654.t1 | AT5G17420 | 31.915 | 376 | 199 | 5 | 25 | 345 | 459 | 832 | 1.60e-59 | 207 |
MS.gene92654.t1 | AT2G21770 | 30.303 | 396 | 202 | 6 | 23 | 346 | 501 | 894 | 1.42e-56 | 198 |
MS.gene92654.t1 | AT4G18780 | 30.749 | 387 | 200 | 6 | 25 | 345 | 405 | 789 | 4.66e-56 | 197 |
MS.gene92654.t1 | AT2G32530 | 31.398 | 379 | 221 | 9 | 1 | 346 | 195 | 567 | 4.75e-52 | 184 |
MS.gene92654.t1 | AT2G32540 | 30.871 | 379 | 223 | 10 | 1 | 346 | 195 | 567 | 3.63e-51 | 181 |
MS.gene92654.t1 | AT2G25540 | 28.753 | 393 | 207 | 6 | 25 | 346 | 476 | 866 | 1.26e-50 | 181 |
MS.gene92654.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 195 | 566 | 1.46e-50 | 178 |
MS.gene92654.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 99 | 470 | 3.61e-50 | 177 |
MS.gene92654.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 195 | 566 | 1.01e-49 | 177 |
MS.gene92654.t1 | AT2G32610 | 30.412 | 388 | 212 | 9 | 1 | 346 | 196 | 567 | 7.38e-49 | 175 |
MS.gene92654.t1 | AT2G32620 | 31.944 | 360 | 203 | 11 | 1 | 328 | 195 | 544 | 8.83e-49 | 172 |
MS.gene92654.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 195 | 564 | 5.12e-47 | 170 |
MS.gene92654.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 195 | 564 | 5.35e-47 | 170 |
MS.gene92654.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 210 | 579 | 7.12e-47 | 169 |
MS.gene92654.t1 | AT4G15290 | 30.871 | 379 | 221 | 11 | 1 | 346 | 195 | 565 | 4.49e-46 | 167 |
MS.gene92654.t1 | AT4G38190 | 27.901 | 362 | 214 | 6 | 22 | 344 | 552 | 905 | 5.55e-43 | 159 |
MS.gene92654.t1 | AT3G03050 | 28.267 | 375 | 199 | 9 | 29 | 344 | 581 | 944 | 2.07e-42 | 157 |
MS.gene92654.t1 | AT1G02730 | 27.632 | 380 | 209 | 6 | 25 | 340 | 605 | 982 | 7.40e-42 | 156 |
MS.gene92654.t1 | AT5G16910 | 27.957 | 372 | 201 | 9 | 29 | 344 | 584 | 944 | 4.60e-41 | 154 |
MS.gene92654.t1 | AT2G33100 | 26.870 | 361 | 204 | 6 | 38 | 340 | 481 | 839 | 2.90e-40 | 151 |
MS.gene92654.t1 | AT2G33100 | 26.870 | 361 | 204 | 6 | 38 | 340 | 481 | 839 | 2.90e-40 | 151 |
MS.gene92654.t1 | AT1G32180 | 28.177 | 362 | 194 | 7 | 39 | 344 | 428 | 779 | 6.85e-40 | 150 |
MS.gene92654.t1 | AT1G32180 | 28.177 | 362 | 194 | 7 | 39 | 344 | 428 | 779 | 6.85e-40 | 150 |
MS.gene92654.t1 | AT4G15320 | 28.205 | 390 | 205 | 10 | 24 | 346 | 229 | 610 | 2.33e-39 | 148 |
MS.gene92654.t1 | AT4G15320 | 28.877 | 374 | 198 | 9 | 33 | 346 | 288 | 653 | 8.99e-39 | 147 |
MS.gene92654.t1 | AT5G09870 | 42.675 | 157 | 81 | 2 | 23 | 170 | 483 | 639 | 1.76e-35 | 137 |
MS.gene92654.t1 | AT5G09870 | 32.948 | 173 | 113 | 2 | 175 | 346 | 706 | 876 | 3.49e-23 | 101 |
MS.gene92654.t1 | AT5G64740 | 42.038 | 157 | 82 | 2 | 23 | 170 | 495 | 651 | 4.69e-35 | 136 |
MS.gene92654.t1 | AT5G64740 | 30.636 | 173 | 117 | 2 | 175 | 346 | 721 | 891 | 4.09e-22 | 98.2 |
MS.gene92654.t1 | AT4G39350 | 41.892 | 148 | 78 | 1 | 23 | 162 | 496 | 643 | 1.21e-33 | 132 |
MS.gene92654.t1 | AT4G39350 | 30.636 | 173 | 117 | 2 | 175 | 346 | 720 | 890 | 2.07e-22 | 99.0 |
MS.gene92654.t1 | AT5G05170 | 38.961 | 154 | 86 | 1 | 25 | 170 | 480 | 633 | 9.00e-32 | 126 |
MS.gene92654.t1 | AT5G05170 | 28.643 | 199 | 130 | 4 | 149 | 346 | 684 | 871 | 1.79e-22 | 99.4 |
MS.gene92654.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 157 | 302 | 9.09e-31 | 123 |
MS.gene92654.t1 | AT5G44030 | 31.579 | 171 | 114 | 2 | 176 | 345 | 406 | 574 | 2.97e-22 | 98.6 |
MS.gene92654.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 465 | 610 | 1.32e-30 | 123 |
MS.gene92654.t1 | AT5G44030 | 31.579 | 171 | 114 | 2 | 176 | 345 | 714 | 882 | 2.54e-22 | 99.0 |
MS.gene92654.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 436 | 581 | 1.42e-30 | 123 |
MS.gene92654.t1 | AT5G44030 | 31.579 | 171 | 114 | 2 | 176 | 345 | 685 | 853 | 2.64e-22 | 98.6 |
MS.gene92654.t1 | AT4G32410 | 40.411 | 146 | 79 | 1 | 25 | 162 | 496 | 641 | 3.38e-30 | 122 |
MS.gene92654.t1 | AT4G32410 | 27.907 | 172 | 121 | 2 | 176 | 346 | 717 | 886 | 9.42e-19 | 88.2 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGATTACAGCTTAGGGTTTC+AGG | 0.132827 | 3.3:+33630357 | MS.gene92654:intron |
GCAAGATCTTTGGAGGTTTC+AGG | 0.182973 | 3.3:-33630477 | None:intergenic |
CAATCTAAGACAAGTAAATA+AGG | 0.260314 | 3.3:-33630396 | None:intergenic |
CCAGTTTGTGTTACTTTCAT+AGG | 0.261272 | 3.3:-33639852 | None:intergenic |
ACTATTGCCTACACACTATA+TGG | 0.309599 | 3.3:+33644033 | MS.gene92654:CDS |
AGTAGAAGTGCATTACTCTT+TGG | 0.327163 | 3.3:+33630735 | MS.gene92654:CDS |
AAAGGTTAGACAATGAATAA+TGG | 0.332845 | 3.3:-33643983 | None:intergenic |
TTGGACAAAAGCAAGATCTT+TGG | 0.335103 | 3.3:-33630487 | None:intergenic |
TGTGGAACATTTGAGGGAAT+TGG | 0.337598 | 3.3:-33630506 | None:intergenic |
GTGTGTAGGCAATAGTATAT+TGG | 0.358637 | 3.3:-33644026 | None:intergenic |
AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 3.3:+33643778 | MS.gene92654:CDS |
AATATAGCCCATTCACTTAC+GGG | 0.364012 | 3.3:+33643947 | MS.gene92654:CDS |
CTTAATGCCGAAACCAACTA+TGG | 0.371003 | 3.3:+33639716 | MS.gene92654:CDS |
TTTGGAAGTCCAAAACAAAA+AGG | 0.371272 | 3.3:+33630753 | MS.gene92654:CDS |
AGACTTGCCATAGTTGGTTT+CGG | 0.383586 | 3.3:-33639723 | None:intergenic |
AAGGTTAGACAATGAATAAT+GGG | 0.392893 | 3.3:-33643982 | None:intergenic |
ATCTTCGTGTGGTGAATGAT+AGG | 0.398588 | 3.3:+33629763 | MS.gene92654:CDS |
CCTATGAAAGTAACACAAAC+TGG | 0.407291 | 3.3:+33639852 | MS.gene92654:CDS |
TGTGTAGGCAATAGTATATT+GGG | 0.407784 | 3.3:-33644025 | None:intergenic |
TATCTTTCTTGCTGAGGTTG+TGG | 0.415505 | 3.3:-33630524 | None:intergenic |
AAATATAGCCCATTCACTTA+CGG | 0.428766 | 3.3:+33643946 | MS.gene92654:CDS |
CATAGCAGACTTGCCATAGT+TGG | 0.435654 | 3.3:-33639729 | None:intergenic |
GAAAGATATATATGATAGTC+AGG | 0.437126 | 3.3:+33630539 | MS.gene92654:CDS |
GATTACAGCTTAGGGTTTCA+GGG | 0.439711 | 3.3:+33630358 | MS.gene92654:intron |
TTGTATCTATGAGGAACATA+TGG | 0.444562 | 3.3:-33630204 | None:intergenic |
CCTCAGATTTGCTTCTTGAA+AGG | 0.449878 | 3.3:+33644063 | MS.gene92654:CDS |
ACATCTGAACTTCTCTTGCT+TGG | 0.451840 | 3.3:+33643916 | MS.gene92654:CDS |
ACCTCCATCCTCTGCAATGA+AGG | 0.452138 | 3.3:-33643807 | None:intergenic |
CTTGAAATCCCGTAAGTGAA+TGG | 0.463902 | 3.3:-33643955 | None:intergenic |
CTGAGGTTGTGGAACATTTG+AGG | 0.465490 | 3.3:-33630513 | None:intergenic |
AATCTAAGACAAGTAAATAA+GGG | 0.470736 | 3.3:-33630395 | None:intergenic |
GAAGATCATTAATGACGAAA+AGG | 0.471278 | 3.3:+33630143 | MS.gene92654:intron |
TTGAAATCCCGTAAGTGAAT+GGG | 0.480525 | 3.3:-33643954 | None:intergenic |
GGTCCAGGACTCACTGGCAG+TGG | 0.491058 | 3.3:+33630702 | MS.gene92654:CDS |
ACCTCCTTCATTGCAGAGGA+TGG | 0.492040 | 3.3:+33643803 | MS.gene92654:CDS |
GACAAAAGCAAGATCTTTGG+AGG | 0.493169 | 3.3:-33630484 | None:intergenic |
TGATAGGCCTTCTCTTATTG+AGG | 0.493986 | 3.3:+33629779 | MS.gene92654:CDS |
TTTCCACTGCCAGTGAGTCC+TGG | 0.495405 | 3.3:-33630705 | None:intergenic |
GATTGCTTCAGTTGGTAAAG+TGG | 0.503160 | 3.3:+33643893 | MS.gene92654:CDS |
ATGGATGGATTAAGAGGTCC+AGG | 0.510516 | 3.3:+33630687 | MS.gene92654:CDS |
AGGAATTTCTGTATTTCCAA+AGG | 0.511930 | 3.3:+33644083 | MS.gene92654:CDS |
CATATATATCTTTCTTGCTG+AGG | 0.513706 | 3.3:-33630530 | None:intergenic |
TGAGGTTGTGGAACATTTGA+GGG | 0.514296 | 3.3:-33630512 | None:intergenic |
TTAAGAGGTCCAGGACTCAC+TGG | 0.519295 | 3.3:+33630696 | MS.gene92654:CDS |
ACAAGGTGGAAAGGAATGGA+TGG | 0.522363 | 3.3:+33630672 | MS.gene92654:CDS |
GCTCCTCCTTTGTATCTATG+AGG | 0.526763 | 3.3:-33630213 | None:intergenic |
TGTGGTTGTGAAGTAGCAAA+AGG | 0.531218 | 3.3:-33644001 | None:intergenic |
GGCAATAGTATATTGGGTTG+TGG | 0.531752 | 3.3:-33644019 | None:intergenic |
TTCTATTAGACAAGGTGGAA+AGG | 0.538567 | 3.3:+33630663 | MS.gene92654:intron |
TTAGACAAGGTGGAAAGGAA+TGG | 0.550173 | 3.3:+33630668 | MS.gene92654:intron |
CAATCCCTCTTTCATGTCAG+TGG | 0.552279 | 3.3:-33643875 | None:intergenic |
GTCATTTCTATTAGACAAGG+TGG | 0.561819 | 3.3:+33630658 | MS.gene92654:intron |
TGCACCCACTGACATGAAAG+AGG | 0.566701 | 3.3:+33643870 | MS.gene92654:CDS |
GAAAGAGGGATTGCTTCAGT+TGG | 0.598558 | 3.3:+33643885 | MS.gene92654:CDS |
AATCCCTCTTTCATGTCAGT+GGG | 0.600324 | 3.3:-33643874 | None:intergenic |
AATGATTCCATATAGTGTGT+AGG | 0.600717 | 3.3:-33644040 | None:intergenic |
TGACGAAAAGGAAATGCCAC+TGG | 0.604632 | 3.3:+33630155 | MS.gene92654:CDS |
GGCTACCTCCTTCATTGCAG+AGG | 0.605797 | 3.3:+33643799 | MS.gene92654:CDS |
TATGTTCCTCATAGATACAA+AGG | 0.607561 | 3.3:+33630207 | MS.gene92654:CDS |
AAAGGAATGGATGGATTAAG+AGG | 0.618466 | 3.3:+33630681 | MS.gene92654:CDS |
TTTACAAGAAGCGAGTGTAG+TGG | 0.619981 | 3.3:+33639820 | MS.gene92654:CDS |
ATGAAGGAGGTAGCCAGTAA+CGG | 0.622292 | 3.3:-33643791 | None:intergenic |
AGGGGTACCTCAATAAGAGA+AGG | 0.625818 | 3.3:-33629786 | None:intergenic |
ATATATATGATAGTCAGGCT+AGG | 0.626693 | 3.3:+33630544 | MS.gene92654:CDS |
CCTTTCAAGAAGCAAATCTG+AGG | 0.627942 | 3.3:-33644063 | None:intergenic |
TCCATCCTCTGCAATGAAGG+AGG | 0.634394 | 3.3:-33643804 | None:intergenic |
AGGAGGAGCACTCAATACAT+TGG | 0.635787 | 3.3:+33630227 | MS.gene92654:CDS |
GAGTCACTGAAAGCAATATG+TGG | 0.636647 | 3.3:+33639758 | MS.gene92654:CDS |
GTTTCAGGGCTAATCAGCAA+TGG | 0.643883 | 3.3:+33630372 | MS.gene92654:CDS |
TCCTTCATTGCAGAGGATGG+AGG | 0.645824 | 3.3:+33643806 | MS.gene92654:CDS |
GCACCCACTGACATGAAAGA+GGG | 0.658795 | 3.3:+33643871 | MS.gene92654:CDS |
CGAGACACATAAACAACCAG+TGG | 0.668168 | 3.3:-33630171 | None:intergenic |
GGTGCACATCCTAAGAAACA+TGG | 0.692331 | 3.3:-33643853 | None:intergenic |
TAACACAAACTGGAGTACTG+AGG | 0.700667 | 3.3:+33639862 | MS.gene92654:CDS |
GTTCCTCATAGATACAAAGG+AGG | 0.702078 | 3.3:+33630210 | MS.gene92654:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.3 | gene | 33629708 | 33644104 | 33629708 | ID=MS.gene92654 |
chr3.3 | mRNA | 33629708 | 33644104 | 33629708 | ID=MS.gene92654.t1;Parent=MS.gene92654 |
chr3.3 | exon | 33629708 | 33629800 | 33629708 | ID=MS.gene92654.t1.exon1;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33629708 | 33629800 | 33629708 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
chr3.3 | exon | 33630147 | 33630248 | 33630147 | ID=MS.gene92654.t1.exon2;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33630147 | 33630248 | 33630147 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
chr3.3 | exon | 33630366 | 33630578 | 33630366 | ID=MS.gene92654.t1.exon3;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33630366 | 33630578 | 33630366 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
chr3.3 | exon | 33630672 | 33630774 | 33630672 | ID=MS.gene92654.t1.exon4;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33630672 | 33630774 | 33630672 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
chr3.3 | exon | 33639705 | 33639883 | 33639705 | ID=MS.gene92654.t1.exon5;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33639705 | 33639883 | 33639705 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
chr3.3 | exon | 33643757 | 33644104 | 33643757 | ID=MS.gene92654.t1.exon6;Parent=MS.gene92654.t1 |
chr3.3 | CDS | 33643757 | 33644104 | 33643757 | ID=cds.MS.gene92654.t1;Parent=MS.gene92654.t1 |
Gene Sequence |
Protein sequence |