Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93050.t1 | AET03441.2 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 4.20E-174 | 620.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93050.t1 | Q8LGI3 | 69.6 | 313 | 89 | 2 | 1 | 313 | 1 | 307 | 1.2e-121 | 437.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93050.t1 | G7L724 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 3.0e-174 | 620.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene44181 | MS.gene93050 | PPI |
MS.gene40797 | MS.gene93050 | PPI |
MS.gene005307 | MS.gene93050 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93050.t1 | MTR_8g070640 | 99.361 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 0.0 | 642 |
MS.gene93050.t1 | MTR_1g045065 | 40.550 | 291 | 170 | 3 | 1 | 291 | 1 | 288 | 1.81e-74 | 231 |
MS.gene93050.t1 | MTR_1g045065 | 38.017 | 242 | 147 | 3 | 1 | 242 | 1 | 239 | 1.40e-51 | 171 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93050.t1 | AT1G30825 | 69.649 | 313 | 89 | 2 | 1 | 313 | 1 | 307 | 1.23e-162 | 456 |
MS.gene93050.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 4.04e-71 | 223 |
MS.gene93050.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 2.66e-70 | 223 |
MS.gene93050.t1 | AT2G33385 | 36.986 | 292 | 181 | 3 | 1 | 291 | 1 | 290 | 4.79e-70 | 220 |
MS.gene93050.t1 | AT2G33385 | 35.644 | 303 | 183 | 4 | 1 | 302 | 1 | 292 | 2.68e-66 | 212 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATACTGTCCGATCCAGTTT+TGG | 0.217961 | 8.2:-32605557 | None:intergenic |
ATCGTTGCCTACTCCATCTT+TGG | 0.266720 | 8.2:+32601820 | MS.gene93050:CDS |
TTCTGTTTCAGTATTGAAAA+AGG | 0.272592 | 8.2:+32600947 | MS.gene93050:intron |
TAGAAATGTTGCTCCGGATA+TGG | 0.274270 | 8.2:+32603421 | MS.gene93050:CDS |
TCTTGCAACTTCATTCTTGC+AGG | 0.282801 | 8.2:+32605121 | MS.gene93050:CDS |
TGGCAGTCTTGTGCAAATTC+TGG | 0.294029 | 8.2:+32601901 | MS.gene93050:CDS |
TTTGTATGTGGACTTCCTTT+TGG | 0.298544 | 8.2:+32601851 | MS.gene93050:CDS |
ACGGATAGCAAGAAAATATT+AGG | 0.300457 | 8.2:-32601797 | None:intergenic |
TCGTGTGGAGTCTTTGATTC+AGG | 0.327828 | 8.2:+32606791 | MS.gene93050:CDS |
ATAATACCCCTCCTTGTTCA+TGG | 0.331553 | 8.2:+32605345 | MS.gene93050:CDS |
AATGCAGGATTTGTATCATT+TGG | 0.336445 | 8.2:+32605422 | MS.gene93050:CDS |
TGCAGCTTTGATTGCTTCAA+TGG | 0.339557 | 8.2:-32601876 | None:intergenic |
TTCTTTGAACTCTCAGGATC+TGG | 0.345649 | 8.2:-32610112 | None:intergenic |
TCATGTTGAAGGCCCAAAAC+TGG | 0.365625 | 8.2:+32605544 | MS.gene93050:CDS |
AGAGCAAAGACAAGCACTTT+TGG | 0.382841 | 8.2:+32603328 | MS.gene93050:intron |
GTAGATACTCCTTTCAGTTC+CGG | 0.383827 | 8.2:-32605383 | None:intergenic |
CTATGTTAGTTATCATGTTA+AGG | 0.387046 | 8.2:+32605601 | MS.gene93050:CDS |
CCGAAGGATTTATGCATACT+AGG | 0.392538 | 8.2:+32606760 | MS.gene93050:CDS |
ATCTTCCCTCGTCATGTTGA+AGG | 0.393552 | 8.2:+32605533 | MS.gene93050:CDS |
CAAAACTGGATCGGACAGTA+TGG | 0.412013 | 8.2:+32605558 | MS.gene93050:CDS |
CGATGTCAGATATCACATTC+AGG | 0.427268 | 8.2:+32601003 | MS.gene93050:CDS |
TGGTAAAAGTAGCATCAGTA+AGG | 0.458645 | 8.2:+32603348 | MS.gene93050:CDS |
GAAGCAATCAAAGCTGCATA+TGG | 0.481422 | 8.2:+32601881 | MS.gene93050:CDS |
GTCGAAGCCAGGCGTACAGC+TGG | 0.483399 | 8.2:+32605317 | MS.gene93050:CDS |
ATTAAGTCCAGCTGTACGCC+TGG | 0.485840 | 8.2:-32605324 | None:intergenic |
ACTCCTTTCAGTTCCGGTGG+TGG | 0.485924 | 8.2:-32605377 | None:intergenic |
TCGTCCTTGGTGCACCACTA+AGG | 0.490974 | 8.2:+32603375 | MS.gene93050:CDS |
CCTAGTATGCATAAATCCTT+CGG | 0.491877 | 8.2:-32606760 | None:intergenic |
GCGTTGAACTCGATCACCAC+TGG | 0.492167 | 8.2:+32600969 | MS.gene93050:CDS |
TTTAGGAATTTGTCGAAGCC+AGG | 0.492797 | 8.2:+32605306 | MS.gene93050:intron |
TGCTTCTAGAAATGTTGCTC+CGG | 0.496839 | 8.2:+32603415 | MS.gene93050:CDS |
CGTCCTTGGTGCACCACTAA+GGG | 0.507682 | 8.2:+32603376 | MS.gene93050:CDS |
TCAAAGGTTCCTGCAAATCA+AGG | 0.510475 | 8.2:+32601968 | MS.gene93050:CDS |
GCAACAAGTGGATCCATATC+CGG | 0.514116 | 8.2:-32603434 | None:intergenic |
TCAGTAAGGGAGGTCGTCCT+TGG | 0.514232 | 8.2:+32603362 | MS.gene93050:CDS |
CTGAAGCAAGAATCTAGAAT+GGG | 0.518291 | 8.2:-32600816 | None:intergenic |
TGCAAATTCTGGATCCACCT+AGG | 0.525594 | 8.2:+32601912 | MS.gene93050:CDS |
GCAAGAATCTAGAATGGGAC+TGG | 0.526581 | 8.2:-32600811 | None:intergenic |
TCTGAAGCAAGAATCTAGAA+TGG | 0.526800 | 8.2:-32600817 | None:intergenic |
ATTGCTTCAATGGCTCCAAA+AGG | 0.535755 | 8.2:-32601866 | None:intergenic |
ATCGAATCATTGAATCTCAT+AGG | 0.537796 | 8.2:-32605089 | None:intergenic |
TACTAGGATGCGTCGTCGTG+TGG | 0.540037 | 8.2:+32606776 | MS.gene93050:CDS |
CTTAACATGATAACTAACAT+AGG | 0.549462 | 8.2:-32605600 | None:intergenic |
TGCTCTTGTTCATCGACCAA+AGG | 0.549781 | 8.2:+32603454 | MS.gene93050:CDS |
TATTTGTAACAGTGCTCCGA+AGG | 0.554094 | 8.2:+32606744 | MS.gene93050:intron |
GATGCATTATCTGCAAATGC+AGG | 0.555094 | 8.2:+32605407 | MS.gene93050:CDS |
CAGCAGATCCTTCCAACGAC+TGG | 0.570937 | 8.2:+32610144 | MS.gene93050:CDS |
AGAGATTTATCTTCAATGTG+AGG | 0.573141 | 8.2:-32601946 | None:intergenic |
ATGGTCTCATACTCCACCAC+CGG | 0.595235 | 8.2:+32605364 | MS.gene93050:CDS |
GCAAATTCTGGATCCACCTA+GGG | 0.595240 | 8.2:+32601913 | MS.gene93050:CDS |
CGTTGAACTCGATCACCACT+GGG | 0.595892 | 8.2:+32600970 | MS.gene93050:CDS |
AGATGGAGTAGGCAACGATA+CGG | 0.597442 | 8.2:-32601816 | None:intergenic |
ATAACGAACCAGTCGTTGGA+AGG | 0.600616 | 8.2:-32610152 | None:intergenic |
ATTGAAGATAAATCTCTCAA+AGG | 0.600659 | 8.2:+32601952 | MS.gene93050:CDS |
GTGAGGTTAAAGCCATCCCT+AGG | 0.601835 | 8.2:-32601929 | None:intergenic |
GCACATAACGAACCAGTCGT+TGG | 0.604353 | 8.2:-32610156 | None:intergenic |
TTGAAGGCCCAAAACTGGAT+CGG | 0.604670 | 8.2:+32605549 | MS.gene93050:CDS |
GGTAAAAGTAGCATCAGTAA+GGG | 0.605688 | 8.2:+32603349 | MS.gene93050:CDS |
ATAGTTTCCAAAGATGGAGT+AGG | 0.606712 | 8.2:-32601827 | None:intergenic |
TATGAGACCATGAACAAGGA+GGG | 0.608289 | 8.2:-32605352 | None:intergenic |
GAGCAACATTTCTAGAAGCA+AGG | 0.614317 | 8.2:-32603412 | None:intergenic |
ACTCCACCACCGGAACTGAA+AGG | 0.622847 | 8.2:+32605374 | MS.gene93050:CDS |
GATACTCCTTTCAGTTCCGG+TGG | 0.623232 | 8.2:-32605380 | None:intergenic |
TTTGGGCCTTCAACATGACG+AGG | 0.628818 | 8.2:-32605539 | None:intergenic |
ATTCTGGATCCACCTAGGGA+TGG | 0.640631 | 8.2:+32601917 | MS.gene93050:CDS |
CGATGAACAAGAGCAACAAG+TGG | 0.645702 | 8.2:-32603446 | None:intergenic |
GGAGTATGAGACCATGAACA+AGG | 0.647126 | 8.2:-32605356 | None:intergenic |
AGGTTAAAGCCATCCCTAGG+TGG | 0.649198 | 8.2:-32601926 | None:intergenic |
AGAATCTAGAATGGGACTGG+AGG | 0.653361 | 8.2:-32600808 | None:intergenic |
AAAAGTAGCATCAGTAAGGG+AGG | 0.660193 | 8.2:+32603352 | MS.gene93050:CDS |
TTGGGCCTTCAACATGACGA+GGG | 0.678323 | 8.2:-32605538 | None:intergenic |
ATGAGACCATGAACAAGGAG+GGG | 0.678416 | 8.2:-32605351 | None:intergenic |
CATCGTCAAATTCAACCCAG+TGG | 0.726847 | 8.2:-32600985 | None:intergenic |
GTATGAGACCATGAACAAGG+AGG | 0.729871 | 8.2:-32605353 | None:intergenic |
TTACCCTTAGTGGTGCACCA+AGG | 0.750127 | 8.2:-32603379 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 32600800 | 32610186 | 32600800 | ID=MS.gene93050 |
chr8.2 | mRNA | 32600800 | 32610186 | 32600800 | ID=MS.gene93050.t1;Parent=MS.gene93050 |
chr8.2 | exon | 32600800 | 32600861 | 32600800 | ID=MS.gene93050.t1.exon1;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32600800 | 32600861 | 32600800 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32600958 | 32601024 | 32600958 | ID=MS.gene93050.t1.exon2;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32600958 | 32601024 | 32600958 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32601782 | 32601989 | 32601782 | ID=MS.gene93050.t1.exon3;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32601782 | 32601989 | 32601782 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32603330 | 32603499 | 32603330 | ID=MS.gene93050.t1.exon4;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32603330 | 32603499 | 32603330 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32605065 | 32605142 | 32605065 | ID=MS.gene93050.t1.exon5;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32605065 | 32605142 | 32605065 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32605311 | 32605443 | 32605311 | ID=MS.gene93050.t1.exon6;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32605311 | 32605443 | 32605311 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32605531 | 32605622 | 32605531 | ID=MS.gene93050.t1.exon7;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32605531 | 32605622 | 32605531 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32606756 | 32606812 | 32606756 | ID=MS.gene93050.t1.exon8;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32606756 | 32606812 | 32606756 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
chr8.2 | exon | 32610094 | 32610186 | 32610094 | ID=MS.gene93050.t1.exon9;Parent=MS.gene93050.t1 |
chr8.2 | CDS | 32610094 | 32610186 | 32610094 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
Gene Sequence |
Protein sequence |