Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93050.t1 | AET03441.2 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 4.20E-174 | 620.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93050.t1 | Q8LGI3 | 69.6 | 313 | 89 | 2 | 1 | 313 | 1 | 307 | 1.2e-121 | 437.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93050.t1 | G7L724 | 99.4 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 3.0e-174 | 620.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44181 | MS.gene93050 | PPI |
| MS.gene40797 | MS.gene93050 | PPI |
| MS.gene005307 | MS.gene93050 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93050.t1 | MTR_8g070640 | 99.361 | 313 | 2 | 0 | 1 | 313 | 1 | 313 | 0.0 | 642 |
| MS.gene93050.t1 | MTR_1g045065 | 40.550 | 291 | 170 | 3 | 1 | 291 | 1 | 288 | 1.81e-74 | 231 |
| MS.gene93050.t1 | MTR_1g045065 | 38.017 | 242 | 147 | 3 | 1 | 242 | 1 | 239 | 1.40e-51 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93050.t1 | AT1G30825 | 69.649 | 313 | 89 | 2 | 1 | 313 | 1 | 307 | 1.23e-162 | 456 |
| MS.gene93050.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 4.04e-71 | 223 |
| MS.gene93050.t1 | AT2G33385 | 36.304 | 303 | 190 | 3 | 1 | 302 | 1 | 301 | 2.66e-70 | 223 |
| MS.gene93050.t1 | AT2G33385 | 36.986 | 292 | 181 | 3 | 1 | 291 | 1 | 290 | 4.79e-70 | 220 |
| MS.gene93050.t1 | AT2G33385 | 35.644 | 303 | 183 | 4 | 1 | 302 | 1 | 292 | 2.68e-66 | 212 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTGTCCGATCCAGTTT+TGG | 0.217961 | 8.2:-32605557 | None:intergenic |
| ATCGTTGCCTACTCCATCTT+TGG | 0.266720 | 8.2:+32601820 | MS.gene93050:CDS |
| TTCTGTTTCAGTATTGAAAA+AGG | 0.272592 | 8.2:+32600947 | MS.gene93050:intron |
| TAGAAATGTTGCTCCGGATA+TGG | 0.274270 | 8.2:+32603421 | MS.gene93050:CDS |
| TCTTGCAACTTCATTCTTGC+AGG | 0.282801 | 8.2:+32605121 | MS.gene93050:CDS |
| TGGCAGTCTTGTGCAAATTC+TGG | 0.294029 | 8.2:+32601901 | MS.gene93050:CDS |
| TTTGTATGTGGACTTCCTTT+TGG | 0.298544 | 8.2:+32601851 | MS.gene93050:CDS |
| ACGGATAGCAAGAAAATATT+AGG | 0.300457 | 8.2:-32601797 | None:intergenic |
| TCGTGTGGAGTCTTTGATTC+AGG | 0.327828 | 8.2:+32606791 | MS.gene93050:CDS |
| ATAATACCCCTCCTTGTTCA+TGG | 0.331553 | 8.2:+32605345 | MS.gene93050:CDS |
| AATGCAGGATTTGTATCATT+TGG | 0.336445 | 8.2:+32605422 | MS.gene93050:CDS |
| TGCAGCTTTGATTGCTTCAA+TGG | 0.339557 | 8.2:-32601876 | None:intergenic |
| TTCTTTGAACTCTCAGGATC+TGG | 0.345649 | 8.2:-32610112 | None:intergenic |
| TCATGTTGAAGGCCCAAAAC+TGG | 0.365625 | 8.2:+32605544 | MS.gene93050:CDS |
| AGAGCAAAGACAAGCACTTT+TGG | 0.382841 | 8.2:+32603328 | MS.gene93050:intron |
| GTAGATACTCCTTTCAGTTC+CGG | 0.383827 | 8.2:-32605383 | None:intergenic |
| CTATGTTAGTTATCATGTTA+AGG | 0.387046 | 8.2:+32605601 | MS.gene93050:CDS |
| CCGAAGGATTTATGCATACT+AGG | 0.392538 | 8.2:+32606760 | MS.gene93050:CDS |
| ATCTTCCCTCGTCATGTTGA+AGG | 0.393552 | 8.2:+32605533 | MS.gene93050:CDS |
| CAAAACTGGATCGGACAGTA+TGG | 0.412013 | 8.2:+32605558 | MS.gene93050:CDS |
| CGATGTCAGATATCACATTC+AGG | 0.427268 | 8.2:+32601003 | MS.gene93050:CDS |
| TGGTAAAAGTAGCATCAGTA+AGG | 0.458645 | 8.2:+32603348 | MS.gene93050:CDS |
| GAAGCAATCAAAGCTGCATA+TGG | 0.481422 | 8.2:+32601881 | MS.gene93050:CDS |
| GTCGAAGCCAGGCGTACAGC+TGG | 0.483399 | 8.2:+32605317 | MS.gene93050:CDS |
| ATTAAGTCCAGCTGTACGCC+TGG | 0.485840 | 8.2:-32605324 | None:intergenic |
| ACTCCTTTCAGTTCCGGTGG+TGG | 0.485924 | 8.2:-32605377 | None:intergenic |
| TCGTCCTTGGTGCACCACTA+AGG | 0.490974 | 8.2:+32603375 | MS.gene93050:CDS |
| CCTAGTATGCATAAATCCTT+CGG | 0.491877 | 8.2:-32606760 | None:intergenic |
| GCGTTGAACTCGATCACCAC+TGG | 0.492167 | 8.2:+32600969 | MS.gene93050:CDS |
| TTTAGGAATTTGTCGAAGCC+AGG | 0.492797 | 8.2:+32605306 | MS.gene93050:intron |
| TGCTTCTAGAAATGTTGCTC+CGG | 0.496839 | 8.2:+32603415 | MS.gene93050:CDS |
| CGTCCTTGGTGCACCACTAA+GGG | 0.507682 | 8.2:+32603376 | MS.gene93050:CDS |
| TCAAAGGTTCCTGCAAATCA+AGG | 0.510475 | 8.2:+32601968 | MS.gene93050:CDS |
| GCAACAAGTGGATCCATATC+CGG | 0.514116 | 8.2:-32603434 | None:intergenic |
| TCAGTAAGGGAGGTCGTCCT+TGG | 0.514232 | 8.2:+32603362 | MS.gene93050:CDS |
| CTGAAGCAAGAATCTAGAAT+GGG | 0.518291 | 8.2:-32600816 | None:intergenic |
| TGCAAATTCTGGATCCACCT+AGG | 0.525594 | 8.2:+32601912 | MS.gene93050:CDS |
| GCAAGAATCTAGAATGGGAC+TGG | 0.526581 | 8.2:-32600811 | None:intergenic |
| TCTGAAGCAAGAATCTAGAA+TGG | 0.526800 | 8.2:-32600817 | None:intergenic |
| ATTGCTTCAATGGCTCCAAA+AGG | 0.535755 | 8.2:-32601866 | None:intergenic |
| ATCGAATCATTGAATCTCAT+AGG | 0.537796 | 8.2:-32605089 | None:intergenic |
| TACTAGGATGCGTCGTCGTG+TGG | 0.540037 | 8.2:+32606776 | MS.gene93050:CDS |
| CTTAACATGATAACTAACAT+AGG | 0.549462 | 8.2:-32605600 | None:intergenic |
| TGCTCTTGTTCATCGACCAA+AGG | 0.549781 | 8.2:+32603454 | MS.gene93050:CDS |
| TATTTGTAACAGTGCTCCGA+AGG | 0.554094 | 8.2:+32606744 | MS.gene93050:intron |
| GATGCATTATCTGCAAATGC+AGG | 0.555094 | 8.2:+32605407 | MS.gene93050:CDS |
| CAGCAGATCCTTCCAACGAC+TGG | 0.570937 | 8.2:+32610144 | MS.gene93050:CDS |
| AGAGATTTATCTTCAATGTG+AGG | 0.573141 | 8.2:-32601946 | None:intergenic |
| ATGGTCTCATACTCCACCAC+CGG | 0.595235 | 8.2:+32605364 | MS.gene93050:CDS |
| GCAAATTCTGGATCCACCTA+GGG | 0.595240 | 8.2:+32601913 | MS.gene93050:CDS |
| CGTTGAACTCGATCACCACT+GGG | 0.595892 | 8.2:+32600970 | MS.gene93050:CDS |
| AGATGGAGTAGGCAACGATA+CGG | 0.597442 | 8.2:-32601816 | None:intergenic |
| ATAACGAACCAGTCGTTGGA+AGG | 0.600616 | 8.2:-32610152 | None:intergenic |
| ATTGAAGATAAATCTCTCAA+AGG | 0.600659 | 8.2:+32601952 | MS.gene93050:CDS |
| GTGAGGTTAAAGCCATCCCT+AGG | 0.601835 | 8.2:-32601929 | None:intergenic |
| GCACATAACGAACCAGTCGT+TGG | 0.604353 | 8.2:-32610156 | None:intergenic |
| TTGAAGGCCCAAAACTGGAT+CGG | 0.604670 | 8.2:+32605549 | MS.gene93050:CDS |
| GGTAAAAGTAGCATCAGTAA+GGG | 0.605688 | 8.2:+32603349 | MS.gene93050:CDS |
| ATAGTTTCCAAAGATGGAGT+AGG | 0.606712 | 8.2:-32601827 | None:intergenic |
| TATGAGACCATGAACAAGGA+GGG | 0.608289 | 8.2:-32605352 | None:intergenic |
| GAGCAACATTTCTAGAAGCA+AGG | 0.614317 | 8.2:-32603412 | None:intergenic |
| ACTCCACCACCGGAACTGAA+AGG | 0.622847 | 8.2:+32605374 | MS.gene93050:CDS |
| GATACTCCTTTCAGTTCCGG+TGG | 0.623232 | 8.2:-32605380 | None:intergenic |
| TTTGGGCCTTCAACATGACG+AGG | 0.628818 | 8.2:-32605539 | None:intergenic |
| ATTCTGGATCCACCTAGGGA+TGG | 0.640631 | 8.2:+32601917 | MS.gene93050:CDS |
| CGATGAACAAGAGCAACAAG+TGG | 0.645702 | 8.2:-32603446 | None:intergenic |
| GGAGTATGAGACCATGAACA+AGG | 0.647126 | 8.2:-32605356 | None:intergenic |
| AGGTTAAAGCCATCCCTAGG+TGG | 0.649198 | 8.2:-32601926 | None:intergenic |
| AGAATCTAGAATGGGACTGG+AGG | 0.653361 | 8.2:-32600808 | None:intergenic |
| AAAAGTAGCATCAGTAAGGG+AGG | 0.660193 | 8.2:+32603352 | MS.gene93050:CDS |
| TTGGGCCTTCAACATGACGA+GGG | 0.678323 | 8.2:-32605538 | None:intergenic |
| ATGAGACCATGAACAAGGAG+GGG | 0.678416 | 8.2:-32605351 | None:intergenic |
| CATCGTCAAATTCAACCCAG+TGG | 0.726847 | 8.2:-32600985 | None:intergenic |
| GTATGAGACCATGAACAAGG+AGG | 0.729871 | 8.2:-32605353 | None:intergenic |
| TTACCCTTAGTGGTGCACCA+AGG | 0.750127 | 8.2:-32603379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 32600800 | 32610186 | 32600800 | ID=MS.gene93050 |
| chr8.2 | mRNA | 32600800 | 32610186 | 32600800 | ID=MS.gene93050.t1;Parent=MS.gene93050 |
| chr8.2 | exon | 32600800 | 32600861 | 32600800 | ID=MS.gene93050.t1.exon1;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32600800 | 32600861 | 32600800 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32600958 | 32601024 | 32600958 | ID=MS.gene93050.t1.exon2;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32600958 | 32601024 | 32600958 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32601782 | 32601989 | 32601782 | ID=MS.gene93050.t1.exon3;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32601782 | 32601989 | 32601782 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32603330 | 32603499 | 32603330 | ID=MS.gene93050.t1.exon4;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32603330 | 32603499 | 32603330 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32605065 | 32605142 | 32605065 | ID=MS.gene93050.t1.exon5;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32605065 | 32605142 | 32605065 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32605311 | 32605443 | 32605311 | ID=MS.gene93050.t1.exon6;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32605311 | 32605443 | 32605311 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32605531 | 32605622 | 32605531 | ID=MS.gene93050.t1.exon7;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32605531 | 32605622 | 32605531 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32606756 | 32606812 | 32606756 | ID=MS.gene93050.t1.exon8;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32606756 | 32606812 | 32606756 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| chr8.2 | exon | 32610094 | 32610186 | 32610094 | ID=MS.gene93050.t1.exon9;Parent=MS.gene93050.t1 |
| chr8.2 | CDS | 32610094 | 32610186 | 32610094 | ID=cds.MS.gene93050.t1;Parent=MS.gene93050.t1 |
| Gene Sequence |
| Protein sequence |