Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93325.t1 | XP_013467477.1 | 99.1 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 3.50E-248 | 867.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93325.t1 | Q9C5Z3 | 85.9 | 434 | 61 | 0 | 4 | 437 | 8 | 441 | 1.5e-218 | 760.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93325.t1 | A0A072VHL0 | 99.1 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 2.6e-248 | 867.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049306 | MS.gene93325 | 0.845689 | 3.47E-59 | -1.69E-46 |
MS.gene051927 | MS.gene93325 | 0.809217 | 2.11E-50 | -1.69E-46 |
MS.gene057321 | MS.gene93325 | 0.834792 | 2.44E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93325.t1 | MTR_1g051820 | 99.085 | 437 | 4 | 0 | 1 | 437 | 1 | 437 | 0.0 | 896 |
MS.gene93325.t1 | MTR_2g079780 | 94.037 | 436 | 26 | 0 | 1 | 436 | 1 | 436 | 0.0 | 860 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93325.t1 | AT3G57290 | 85.945 | 434 | 61 | 0 | 4 | 437 | 8 | 441 | 0.0 | 789 |
Find 92 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGTTGGTCACTCAATTTC+TGG | 0.112751 | 1.3:-33482134 | MS.gene93325:CDS |
CTGCTTTGCACCTGATTTAA+AGG | 0.121318 | 1.3:+33483771 | None:intergenic |
GGACCCCATTACTGAGTTTC+TGG | 0.147601 | 1.3:-33483296 | MS.gene93325:CDS |
TCCACATTCAAACTGAAATT+TGG | 0.164521 | 1.3:+33484073 | None:intergenic |
CAAACTGAAATTTGGCATAT+TGG | 0.230513 | 1.3:+33484081 | None:intergenic |
TCCAGTTTCAGAGTCAATTT+TGG | 0.235308 | 1.3:+33482551 | None:intergenic |
AAAGGAGTTTGAATGCATTA+TGG | 0.240593 | 1.3:-33483992 | MS.gene93325:CDS |
TCAAGGAACTCGTCCCTTAA+TGG | 0.241702 | 1.3:+33482995 | None:intergenic |
TCAGAATCCTGCTGCTGTTC+AGG | 0.255503 | 1.3:-33485322 | MS.gene93325:CDS |
GCCAAAATTGACTCTGAAAC+TGG | 0.280218 | 1.3:-33482552 | MS.gene93325:CDS |
CTGAAGTATTGATGCAAAAC+TGG | 0.284674 | 1.3:-33483956 | MS.gene93325:CDS |
ACTTCTCAACTGTACCATTA+AGG | 0.289978 | 1.3:-33483009 | MS.gene93325:CDS |
ACGAGATGACGGTCGAGATT+TGG | 0.314496 | 1.3:+33485576 | None:intergenic |
CAAGCCAGAAACTCAGTAAT+GGG | 0.350399 | 1.3:+33483292 | None:intergenic |
AGAGATCGATCTTAGCCTTA+AGG | 0.355326 | 1.3:+33485499 | None:intergenic |
ATCAGGTGCAAAGCAGAATA+TGG | 0.356738 | 1.3:-33483764 | MS.gene93325:CDS |
ACAAAGTCAACTTACACATT+TGG | 0.360127 | 1.3:+33482504 | None:intergenic |
ACAAGAGCAGAATTCATATA+AGG | 0.370491 | 1.3:-33483317 | MS.gene93325:CDS |
AAGGAGTTTGAATGCATTAT+GGG | 0.380914 | 1.3:-33483991 | MS.gene93325:CDS |
TGAAGATGCTGCTGCACCTC+TGG | 0.389367 | 1.3:-33485355 | MS.gene93325:CDS |
AACTTACACATTTGGATGGT+TGG | 0.391793 | 1.3:+33482512 | None:intergenic |
ACTTGTAAGTACGGACGTTA+AGG | 0.393511 | 1.3:+33482152 | None:intergenic |
TGAAGATGTTCCTCAGGATA+TGG | 0.407476 | 1.3:-33485418 | MS.gene93325:CDS |
ACTTACACATTTGGATGGTT+GGG | 0.414080 | 1.3:+33482513 | None:intergenic |
TTTATAAAATCTTTGAATTG+AGG | 0.426183 | 1.3:+33483349 | None:intergenic |
GGACGTTAAGGGCCTTTGTA+TGG | 0.426515 | 1.3:+33482164 | None:intergenic |
TTCAACTCGTTTACCAAGGA+AGG | 0.433860 | 1.3:+33483039 | None:intergenic |
CTTCTCAACTGTACCATTAA+GGG | 0.436118 | 1.3:-33483008 | MS.gene93325:CDS |
CTCAATTCCTGAACAGCAGC+AGG | 0.447203 | 1.3:+33485315 | None:intergenic |
AAAGGTGTGGAGCACTGGTT+TGG | 0.450397 | 1.3:+33483416 | None:intergenic |
TCGCAAAAGGTGTGGAGCAC+TGG | 0.455123 | 1.3:+33483411 | None:intergenic |
GGAAGAGCTCAATCGCTTGA+AGG | 0.456032 | 1.3:-33483922 | MS.gene93325:CDS |
ATTCTCAATGATCCCTTCCT+TGG | 0.459914 | 1.3:-33483052 | MS.gene93325:CDS |
CGACGATAACCACATCCTTA+AGG | 0.465161 | 1.3:-33485514 | MS.gene93325:CDS |
GCAGAATATGGTTGATGCAT+TGG | 0.472142 | 1.3:-33483752 | MS.gene93325:CDS |
GCAAAACTGGGATATTGCTC+TGG | 0.473242 | 1.3:-33483943 | MS.gene93325:CDS |
GCCAAATTTCAGTTTGAATG+TGG | 0.476604 | 1.3:-33484074 | MS.gene93325:CDS |
CGATCTTAGCCTTAAGGATG+TGG | 0.481340 | 1.3:+33485505 | None:intergenic |
CTTGTAAGTACGGACGTTAA+GGG | 0.483809 | 1.3:+33482153 | None:intergenic |
ATGGTTGGGTTCCATGATAA+CGG | 0.488427 | 1.3:+33482527 | None:intergenic |
TGAAACTGGAACCGTTATCA+TGG | 0.490634 | 1.3:-33482538 | MS.gene93325:CDS |
TCTGGAACAAGCACAAGCTC+AGG | 0.502512 | 1.3:-33482116 | MS.gene93325:CDS |
TCGAGATTTGGTGCCATTCG+CGG | 0.503646 | 1.3:+33485588 | None:intergenic |
GAAGGAAATAATTGACTCAA+AGG | 0.507072 | 1.3:-33483904 | MS.gene93325:intron |
GATTGGTCCTGCACAGATAG+AGG | 0.508123 | 1.3:-33484111 | MS.gene93325:CDS |
GAATGCATTATGGGGAAAGC+TGG | 0.508877 | 1.3:-33483982 | MS.gene93325:CDS |
TCAAACTGAAGATGTTCCTC+AGG | 0.511719 | 1.3:-33485424 | MS.gene93325:CDS |
TCAGGATATGGTTGAACGTA+GGG | 0.512113 | 1.3:-33485406 | MS.gene93325:CDS |
TCTGTGTTCTTCCATTGTCA+TGG | 0.519006 | 1.3:+33483709 | None:intergenic |
TATAATGCCTCTATCTGTGC+AGG | 0.524788 | 1.3:+33484104 | None:intergenic |
TCGACAATGCATACTTGTCC+TGG | 0.525032 | 1.3:+33483670 | None:intergenic |
TTGTGCATAATGCTCTGTAC+TGG | 0.543995 | 1.3:+33484021 | None:intergenic |
CTGTGGCCAAGTATCGCAAA+AGG | 0.544639 | 1.3:+33483398 | None:intergenic |
ACAAGCCAGAAACTCAGTAA+TGG | 0.558600 | 1.3:+33483291 | None:intergenic |
GAGTGACCAACTTGTAAGTA+CGG | 0.559483 | 1.3:+33482143 | None:intergenic |
CATTTATTGTCAACAAGCGC+AGG | 0.566791 | 1.3:-33483375 | MS.gene93325:CDS |
ATACGATCTAACACCGCGAA+TGG | 0.568274 | 1.3:-33485601 | MS.gene93325:CDS |
ATTACGAGGAGGCTGAGAGA+TGG | 0.570112 | 1.3:-33482608 | MS.gene93325:CDS |
TGGCATCAAGCTTTGAGCCA+CGG | 0.570397 | 1.3:+33482571 | None:intergenic |
AGTCAACTTACACATTTGGA+TGG | 0.571682 | 1.3:+33482508 | None:intergenic |
TATGTCAACTATGACTTCGA+TGG | 0.573424 | 1.3:-33483265 | MS.gene93325:CDS |
TAACGTCCGTACTTACAAGT+TGG | 0.576062 | 1.3:-33482149 | MS.gene93325:CDS |
TCAACTCGTTTACCAAGGAA+GGG | 0.581833 | 1.3:+33483040 | None:intergenic |
AAACATGGTTGATTACGCTA+TGG | 0.581920 | 1.3:-33485466 | MS.gene93325:CDS |
GCCAAGTATCGCAAAAGGTG+TGG | 0.585518 | 1.3:+33483403 | None:intergenic |
TTTGAATGTGGAAACTACTC+TGG | 0.589555 | 1.3:-33484062 | MS.gene93325:CDS |
ACGAGTTCCTTGAAAATGCT+AGG | 0.595391 | 1.3:-33482985 | MS.gene93325:CDS |
TGAAGTATTGATGCAAAACT+GGG | 0.602113 | 1.3:-33483955 | MS.gene93325:CDS |
TCGTTGATGTATCCTGCAGT+AGG | 0.602989 | 1.3:+33482946 | None:intergenic |
ATGGCGCACAAAAGAAGATG+AGG | 0.603295 | 1.3:-33483246 | MS.gene93325:CDS |
CTCAGGATATGGTTGAACGT+AGG | 0.609881 | 1.3:-33485407 | MS.gene93325:CDS |
CATTATGCACAAACAGCGAA+AGG | 0.610718 | 1.3:-33484010 | MS.gene93325:CDS |
GATGCTTAATGACAAATACC+AGG | 0.618615 | 1.3:-33485268 | MS.gene93325:intron |
TCTTGAAGAAACTCTAAGAG+TGG | 0.630761 | 1.3:+33485549 | None:intergenic |
AGGAGTTTGAATGCATTATG+GGG | 0.632385 | 1.3:-33483990 | MS.gene93325:CDS |
TTATTGTCAACAAGCGCAGG+AGG | 0.633199 | 1.3:-33483372 | MS.gene93325:CDS |
GCTAAATTTGAATTACGAGG+AGG | 0.633335 | 1.3:-33482619 | MS.gene93325:CDS |
GATAATTGATCTGTTTAACC+AGG | 0.636082 | 1.3:-33483688 | MS.gene93325:CDS |
GAAGCTAAATTTGAATTACG+AGG | 0.636557 | 1.3:-33482622 | MS.gene93325:CDS |
AGAGTGGAAAGACGAGATGA+CGG | 0.636769 | 1.3:+33485565 | None:intergenic |
GATACATCAACGAATTGACA+TGG | 0.641261 | 1.3:-33482936 | MS.gene93325:CDS |
TTCTGAAGAAACGCAACCAG+AGG | 0.645405 | 1.3:+33485339 | None:intergenic |
TCTCTTAAACAACACAAACA+TGG | 0.651114 | 1.3:-33485481 | MS.gene93325:CDS |
TGGCGCACAAAAGAAGATGA+GGG | 0.654557 | 1.3:-33483245 | MS.gene93325:CDS |
TTTCTTCAACTCGTTTACCA+AGG | 0.661725 | 1.3:+33483035 | None:intergenic |
ATACATCAACGAATTGACAT+GGG | 0.662777 | 1.3:-33482935 | MS.gene93325:CDS |
TGGATTGTGAATCTCATCCG+TGG | 0.676046 | 1.3:-33482588 | MS.gene93325:CDS |
CTTGTTGACAATAAATGCTG+TGG | 0.698188 | 1.3:+33483381 | None:intergenic |
CTACGTTCAACCATATCCTG+AGG | 0.701454 | 1.3:+33485408 | None:intergenic |
TACATCAACGAATTGACATG+GGG | 0.710665 | 1.3:-33482934 | MS.gene93325:intron |
AAGCCAGAAACTCAGTAATG+GGG | 0.712120 | 1.3:+33483293 | None:intergenic |
GCAGCTGATAGACCATACAA+AGG | 0.723404 | 1.3:-33482176 | MS.gene93325:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAATTAATCATAAATATT+TGG | - | chr1.3:33482500-33482519 | MS.gene93325:intron | 10.0% |
!!! | CTATTTTCTAAAATTATTAT+TGG | - | chr1.3:33485372-33485391 | MS.gene93325:CDS | 10.0% |
!!! | TTTTGATTAAAAACAAATTA+AGG | + | chr1.3:33484119-33484138 | None:intergenic | 10.0% |
! | CCCCCCCCCCCCCCCCCCCC+CGG | - | chr1.3:33484086-33484105 | MS.gene93325:CDS | 100.0% |
! | CCGGGGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484093-33484112 | None:intergenic | 100.0% |
! | CGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484092-33484111 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484086-33484105 | None:intergenic | 100.0% |
! | GGGGGGGGGGGGGGGGGGGG+TGG | + | chr1.3:33484086-33484105 | None:intergenic | 100.0% |
!! | AATAAATTCCAAAAAAACAA+TGG | + | chr1.3:33483490-33483509 | None:intergenic | 15.0% |
!! | ATAAATTCCAAAAAAACAAT+GGG | + | chr1.3:33483489-33483508 | None:intergenic | 15.0% |
!! | TTATAACTTAGCTTAAATAT+AGG | - | chr1.3:33483032-33483051 | MS.gene93325:CDS | 15.0% |
!! | TTTATAAAATCTTTGAATTG+AGG | + | chr1.3:33484368-33484387 | None:intergenic | 15.0% |
!!! | CAACTAATTTTTTTACTATA+GGG | - | chr1.3:33485026-33485045 | MS.gene93325:intron | 15.0% |
!! | ATAAAAATTGTTAAACCCAA+CGG | + | chr1.3:33484840-33484859 | None:intergenic | 20.0% |
!! | ATGAAGCAATTCAAAAATTA+AGG | + | chr1.3:33485506-33485525 | None:intergenic | 20.0% |
!! | TAATATTAGAACTAGTATTC+TGG | - | chr1.3:33485451-33485470 | MS.gene93325:CDS | 20.0% |
!! | TTGTTTGTTTAATTGAAGAT+GGG | - | chr1.3:33483201-33483220 | MS.gene93325:intron | 20.0% |
!!! | ATTTTATTTGTGTCCTTATT+AGG | - | chr1.3:33484581-33484600 | MS.gene93325:intron | 20.0% |
!!! | GCAACTAATTTTTTTACTAT+AGG | - | chr1.3:33485025-33485044 | MS.gene93325:intron | 20.0% |
!!! | TACACATCTATAATCAATTT+TGG | - | chr1.3:33482961-33482980 | MS.gene93325:CDS | 20.0% |
!!! | TTTTTATGTTGTTTTTCTTC+TGG | - | chr1.3:33483526-33483545 | MS.gene93325:intron | 20.0% |
! | AATAGACTATCAAAGATCAA+TGG | + | chr1.3:33484909-33484928 | None:intergenic | 25.0% |
! | ATAAACGCTAAAACAGTTTA+TGG | - | chr1.3:33483291-33483310 | MS.gene93325:CDS | 25.0% |
! | ATTTCATGTCTATGTTTCAA+AGG | - | chr1.3:33485423-33485442 | MS.gene93325:CDS | 25.0% |
! | GTATTGTTTGACTGAAAATA+AGG | - | chr1.3:33482692-33482711 | MS.gene93325:intron | 25.0% |
! | GTTGTTTGTTTAATTGAAGA+TGG | - | chr1.3:33483200-33483219 | MS.gene93325:intron | 25.0% |
! | TACTATGATTCTATCAATCT+CGG | + | chr1.3:33483454-33483473 | None:intergenic | 25.0% |
! | TAGTAAAAAAATTAGTTGCG+TGG | + | chr1.3:33485024-33485043 | None:intergenic | 25.0% |
! | TAGTTACTATATGTCTTATG+TGG | + | chr1.3:33483237-33483256 | None:intergenic | 25.0% |
! | TATGTAGAATTGTGTATGTT+TGG | - | chr1.3:33482617-33482636 | MS.gene93325:CDS | 25.0% |
! | TTATCTTATGACATAAGTAC+TGG | + | chr1.3:33483335-33483354 | None:intergenic | 25.0% |
! | TTTCTACCGTATTAACTTAT+GGG | - | chr1.3:33485273-33485292 | MS.gene93325:CDS | 25.0% |
! | TTTGAATTCTGACTTCTAAA+AGG | - | chr1.3:33483568-33483587 | MS.gene93325:intron | 25.0% |
!! | TAAAAACAAATTAAGGCATC+CGG | + | chr1.3:33484112-33484131 | None:intergenic | 25.0% |
!! | TTGATTGTTAAGAGTATGTT+TGG | - | chr1.3:33482553-33482572 | MS.gene93325:CDS | 25.0% |
!! | TTTTTCATCACCTTTAAATC+AGG | - | chr1.3:33483933-33483952 | MS.gene93325:CDS | 25.0% |
!!! | AGGTTTTGTCTGAAAATTTT+AGG | - | chr1.3:33483052-33483071 | MS.gene93325:CDS | 25.0% |
!!! | CTGAAAATTTTAGGTAAGTT+TGG | - | chr1.3:33483061-33483080 | MS.gene93325:intron | 25.0% |
AAAGGAGTTTGAATGCATTA+TGG | - | chr1.3:33483722-33483741 | MS.gene93325:CDS | 30.0% | |
AAGCGATTATTTATGAAACC+TGG | + | chr1.3:33482467-33482486 | None:intergenic | 30.0% | |
AAGGAGTTTGAATGCATTAT+GGG | - | chr1.3:33483723-33483742 | MS.gene93325:CDS | 30.0% | |
AATTCCAAAAAAACAATGGG+AGG | + | chr1.3:33483486-33483505 | None:intergenic | 30.0% | |
ACAAAGTCAACTTACACATT+TGG | + | chr1.3:33485213-33485232 | None:intergenic | 30.0% | |
ACAAGAGCAGAATTCATATA+AGG | - | chr1.3:33484397-33484416 | MS.gene93325:intron | 30.0% | |
ATACATCAACGAATTGACAT+GGG | - | chr1.3:33484779-33484798 | MS.gene93325:intron | 30.0% | |
ATCCTAGAAACAAAGGAAAA+AGG | + | chr1.3:33485483-33485502 | None:intergenic | 30.0% | |
ATTAAGGATCCTAGAAACAA+AGG | + | chr1.3:33485490-33485509 | None:intergenic | 30.0% | |
CAAACTGAAATTTGGCATAT+TGG | + | chr1.3:33483636-33483655 | None:intergenic | 30.0% | |
CTTTCTACCGTATTAACTTA+TGG | - | chr1.3:33485272-33485291 | MS.gene93325:CDS | 30.0% | |
GAAGCTAAATTTGAATTACG+AGG | - | chr1.3:33485092-33485111 | MS.gene93325:intron | 30.0% | |
GATAATTGATCTGTTTAACC+AGG | - | chr1.3:33484026-33484045 | MS.gene93325:CDS | 30.0% | |
GATGAAGCAAATACCTAATA+AGG | + | chr1.3:33484597-33484616 | None:intergenic | 30.0% | |
TCCACATTCAAACTGAAATT+TGG | + | chr1.3:33483644-33483663 | None:intergenic | 30.0% | |
TCTCTTAAACAACACAAACA+TGG | - | chr1.3:33482233-33482252 | MS.gene93325:intron | 30.0% | |
TGAAACATAGACATGAAATC+TGG | + | chr1.3:33485422-33485441 | None:intergenic | 30.0% | |
TTCTACCGTATTAACTTATG+GGG | - | chr1.3:33485274-33485293 | MS.gene93325:CDS | 30.0% | |
! | AAAAACAAATTAAGGCATCC+GGG | + | chr1.3:33484111-33484130 | None:intergenic | 30.0% |
! | AAAGCCCTTATTTATCAAGT+CGG | + | chr1.3:33485239-33485258 | None:intergenic | 30.0% |
! | AATTCTGACTTCTAAAAGGA+TGG | - | chr1.3:33483572-33483591 | MS.gene93325:intron | 30.0% |
! | ACTTAATTGATGATTCTCTC+TGG | - | chr1.3:33484980-33484999 | MS.gene93325:intron | 30.0% |
! | ATTACCTGCATTTTTGCAAA+TGG | + | chr1.3:33484644-33484663 | None:intergenic | 30.0% |
! | GAAGGAAATAATTGACTCAA+AGG | - | chr1.3:33483810-33483829 | MS.gene93325:intron | 30.0% |
! | GGAATCAAAATTGATTCTAG+AGG | - | chr1.3:33482653-33482672 | MS.gene93325:intron | 30.0% |
! | TTACCCGACTTGATAAATAA+GGG | - | chr1.3:33485232-33485251 | MS.gene93325:intron | 30.0% |
!! | ATCCTTTTTCCTTTGTTTCT+AGG | - | chr1.3:33485478-33485497 | MS.gene93325:CDS | 30.0% |
!! | GCATTGACAAGAATTGATTT+TGG | - | chr1.3:33482796-33482815 | MS.gene93325:intron | 30.0% |
!! | TAAGGGCTTTTATAGTCTTA+TGG | - | chr1.3:33485249-33485268 | MS.gene93325:intron | 30.0% |
!! | TGAAGTATTGATGCAAAACT+GGG | - | chr1.3:33483759-33483778 | MS.gene93325:CDS | 30.0% |
!!! | AATTTTGATTCCTCCAAAAG+TGG | + | chr1.3:33482645-33482664 | None:intergenic | 30.0% |
!!! | ATCTTTTTCAACCATGACAA+TGG | - | chr1.3:33483994-33484013 | MS.gene93325:CDS | 30.0% |
!!! | TTATCCTCCCATTGTTTTTT+TGG | - | chr1.3:33483479-33483498 | MS.gene93325:intron | 30.0% |
AAACATGGTTGATTACGCTA+TGG | - | chr1.3:33482248-33482267 | MS.gene93325:intron | 35.0% | |
AACTTACACATTTGGATGGT+TGG | + | chr1.3:33485205-33485224 | None:intergenic | 35.0% | |
ACTTACACATTTGGATGGTT+GGG | + | chr1.3:33485204-33485223 | None:intergenic | 35.0% | |
ACTTCTCAACTGTACCATTA+AGG | - | chr1.3:33484705-33484724 | MS.gene93325:intron | 35.0% | |
AGGAGTTTGAATGCATTATG+GGG | - | chr1.3:33483724-33483743 | MS.gene93325:CDS | 35.0% | |
AGTCAACTTACACATTTGGA+TGG | + | chr1.3:33485209-33485228 | None:intergenic | 35.0% | |
CGACATTTGTAGCAGATATT+AGG | + | chr1.3:33484812-33484831 | None:intergenic | 35.0% | |
CTTACCATTTGCAAAAATGC+AGG | - | chr1.3:33484637-33484656 | MS.gene93325:intron | 35.0% | |
CTTCTCAACTGTACCATTAA+GGG | - | chr1.3:33484706-33484725 | MS.gene93325:intron | 35.0% | |
CTTGTTGACAATAAATGCTG+TGG | + | chr1.3:33484336-33484355 | None:intergenic | 35.0% | |
GATACATCAACGAATTGACA+TGG | - | chr1.3:33484778-33484797 | MS.gene93325:intron | 35.0% | |
GATGCTTAATGACAAATACC+AGG | - | chr1.3:33482446-33482465 | MS.gene93325:intron | 35.0% | |
GATTTAAGCTACCAAAGGTT+GGG | - | chr1.3:33483094-33483113 | MS.gene93325:intron | 35.0% | |
GCCAAATTTCAGTTTGAATG+TGG | - | chr1.3:33483640-33483659 | MS.gene93325:intron | 35.0% | |
GCTAAATTTGAATTACGAGG+AGG | - | chr1.3:33485095-33485114 | MS.gene93325:intron | 35.0% | |
TACATCAACGAATTGACATG+GGG | - | chr1.3:33484780-33484799 | MS.gene93325:intron | 35.0% | |
TAGGTGATTTAAGCTACCAA+AGG | - | chr1.3:33483089-33483108 | MS.gene93325:intron | 35.0% | |
TATCAATCTCGGCTAAAAGT+GGG | + | chr1.3:33483443-33483462 | None:intergenic | 35.0% | |
TATGTCAACTATGACTTCGA+TGG | - | chr1.3:33484449-33484468 | MS.gene93325:intron | 35.0% | |
TGATGTATGATATCATGTCC+AGG | - | chr1.3:33484261-33484280 | MS.gene93325:intron | 35.0% | |
TGATTTAAGCTACCAAAGGT+TGG | - | chr1.3:33483093-33483112 | MS.gene93325:intron | 35.0% | |
TTGGATAGCATTAAGATACC+TGG | + | chr1.3:33484282-33484301 | None:intergenic | 35.0% | |
TTTCTTCAACTCGTTTACCA+AGG | + | chr1.3:33484682-33484701 | None:intergenic | 35.0% | |
TTTGAATGTGGAAACTACTC+TGG | - | chr1.3:33483652-33483671 | MS.gene93325:intron | 35.0% | |
! | AAAACAAATTAAGGCATCCG+GGG | + | chr1.3:33484110-33484129 | None:intergenic | 35.0% |
! | AAAGGATGGATTCTACAGAT+TGG | - | chr1.3:33483586-33483605 | MS.gene93325:intron | 35.0% |
! | AAGCCCTTATTTATCAAGTC+GGG | + | chr1.3:33485238-33485257 | None:intergenic | 35.0% |
! | ACTAGCAAGAGAGCATATTA+AGG | + | chr1.3:33483382-33483401 | None:intergenic | 35.0% |
! | ATTGATGATTCTCTCTGGTT+TGG | - | chr1.3:33484985-33485004 | MS.gene93325:intron | 35.0% |
! | ATTGGTTTCTTGTGTCAGTT+CGG | - | chr1.3:33485390-33485409 | MS.gene93325:CDS | 35.0% |
! | CTAGCAAGAGAGCATATTAA+GGG | + | chr1.3:33483381-33483400 | None:intergenic | 35.0% |
! | GACTATTTCTTGCATGTTCT+AGG | - | chr1.3:33484212-33484231 | MS.gene93325:intron | 35.0% |
! | GTTACCCGACTTGATAAATA+AGG | - | chr1.3:33485231-33485250 | MS.gene93325:intron | 35.0% |
! | GTTTTGCATCAATACTTCAG+CGG | + | chr1.3:33483758-33483777 | None:intergenic | 35.0% |
! | TAAACAGCCTAGCATTTTCA+AGG | + | chr1.3:33484739-33484758 | None:intergenic | 35.0% |
! | TCCAGTTTCAGAGTCAATTT+TGG | + | chr1.3:33485166-33485185 | None:intergenic | 35.0% |
! | TCTTGAAGAAACTCTAAGAG+TGG | + | chr1.3:33482168-33482187 | None:intergenic | 35.0% |
! | TTAGGTAAGTTTGGAACACT+AGG | - | chr1.3:33483070-33483089 | MS.gene93325:intron | 35.0% |
! | TTTTGAATTGCTTCATGTCC+AGG | - | chr1.3:33485510-33485529 | MS.gene93325:CDS | 35.0% |
!! | AGTTTCTAGCTTATCGTTTC+TGG | - | chr1.3:33482923-33482942 | MS.gene93325:intron | 35.0% |
!! | CTGAAGTATTGATGCAAAAC+TGG | - | chr1.3:33483758-33483777 | MS.gene93325:CDS | 35.0% |
!! | GATTTTGGAAACTGAGTTGT+TGG | - | chr1.3:33482811-33482830 | MS.gene93325:intron | 35.0% |
!! | TGTATGTTTGGTTCCACTTT+TGG | - | chr1.3:33482629-33482648 | MS.gene93325:CDS | 35.0% |
!!! | TTATTTTTGAGACCTACTGC+AGG | - | chr1.3:33484756-33484775 | MS.gene93325:intron | 35.0% |
AAGCCAGAAACTCAGTAATG+GGG | + | chr1.3:33484424-33484443 | None:intergenic | 40.0% | |
AAGTGGACCAAACATACACT+AGG | - | chr1.3:33482993-33483012 | MS.gene93325:CDS | 40.0% | |
AATATGCTCTCTTGCTAGTG+AGG | - | chr1.3:33483383-33483402 | MS.gene93325:CDS | 40.0% | |
ACAAATGTCGTACTACCGTT+GGG | - | chr1.3:33484822-33484841 | MS.gene93325:intron | 40.0% | |
ACAAGCCAGAAACTCAGTAA+TGG | + | chr1.3:33484426-33484445 | None:intergenic | 40.0% | |
ACGAGTTCCTTGAAAATGCT+AGG | - | chr1.3:33484729-33484748 | MS.gene93325:intron | 40.0% | |
ACTTGTAAGTACGGACGTTA+AGG | + | chr1.3:33485565-33485584 | None:intergenic | 40.0% | |
ATCAGGTGCAAAGCAGAATA+TGG | - | chr1.3:33483950-33483969 | MS.gene93325:CDS | 40.0% | |
ATGGTTGGGTTCCATGATAA+CGG | + | chr1.3:33485190-33485209 | None:intergenic | 40.0% | |
ATTCTCAATGATCCCTTCCT+TGG | - | chr1.3:33484662-33484681 | MS.gene93325:intron | 40.0% | |
CAAGCCAGAAACTCAGTAAT+GGG | + | chr1.3:33484425-33484444 | None:intergenic | 40.0% | |
CATGTCCAAATGCCAAACAA+AGG | + | chr1.3:33482743-33482762 | None:intergenic | 40.0% | |
CATTATGCACAAACAGCGAA+AGG | - | chr1.3:33483704-33483723 | MS.gene93325:CDS | 40.0% | |
CATTTATTGTCAACAAGCGC+AGG | - | chr1.3:33484339-33484358 | MS.gene93325:intron | 40.0% | |
CTATCAATCTCGGCTAAAAG+TGG | + | chr1.3:33483444-33483463 | None:intergenic | 40.0% | |
CTGCTTTGCACCTGATTTAA+AGG | + | chr1.3:33483946-33483965 | None:intergenic | 40.0% | |
CTTGTAAGTACGGACGTTAA+GGG | + | chr1.3:33485564-33485583 | None:intergenic | 40.0% | |
GAGTGACCAACTTGTAAGTA+CGG | + | chr1.3:33485574-33485593 | None:intergenic | 40.0% | |
GAGTGCCCCATAAGTTAATA+CGG | + | chr1.3:33485282-33485301 | None:intergenic | 40.0% | |
TAACGTCCGTACTTACAAGT+TGG | - | chr1.3:33485565-33485584 | MS.gene93325:CDS | 40.0% | |
TACAAATGTCGTACTACCGT+TGG | - | chr1.3:33484821-33484840 | MS.gene93325:intron | 40.0% | |
TACCAAAGGTTGGGTAGTAA+GGG | - | chr1.3:33483103-33483122 | MS.gene93325:intron | 40.0% | |
TATAATGCCTCTATCTGTGC+AGG | + | chr1.3:33483613-33483632 | None:intergenic | 40.0% | |
TCAAACTGAAGATGTTCCTC+AGG | - | chr1.3:33482290-33482309 | MS.gene93325:intron | 40.0% | |
TCAACTCGTTTACCAAGGAA+GGG | + | chr1.3:33484677-33484696 | None:intergenic | 40.0% | |
TCAGGATATGGTTGAACGTA+GGG | - | chr1.3:33482308-33482327 | MS.gene93325:intron | 40.0% | |
TCTGTGTTCTTCCATTGTCA+TGG | + | chr1.3:33484008-33484027 | None:intergenic | 40.0% | |
TCTTGTTCACCTGGAAAAAC+AGG | - | chr1.3:33484869-33484888 | MS.gene93325:intron | 40.0% | |
TGAAACTGGAACCGTTATCA+TGG | - | chr1.3:33485176-33485195 | MS.gene93325:intron | 40.0% | |
TGAAGATGTTCCTCAGGATA+TGG | - | chr1.3:33482296-33482315 | MS.gene93325:intron | 40.0% | |
TTCAACTCGTTTACCAAGGA+AGG | + | chr1.3:33484678-33484697 | None:intergenic | 40.0% | |
TTGCAGTCCTAGTGTATGTT+TGG | + | chr1.3:33483003-33483022 | None:intergenic | 40.0% | |
TTGTGCATAATGCTCTGTAC+TGG | + | chr1.3:33483696-33483715 | None:intergenic | 40.0% | |
! | AAACAAATTAAGGCATCCGG+GGG | + | chr1.3:33484109-33484128 | None:intergenic | 40.0% |
! | GCAGAATATGGTTGATGCAT+TGG | - | chr1.3:33483962-33483981 | MS.gene93325:CDS | 40.0% |
! | GTGTATGTTTGGTCCACTTT+TGG | + | chr1.3:33482992-33483011 | None:intergenic | 40.0% |
! | TTTTTCCAGGTGAACAAGAG+AGG | + | chr1.3:33484868-33484887 | None:intergenic | 40.0% |
!! | AGAGATCGATCTTAGCCTTA+AGG | + | chr1.3:33482218-33482237 | None:intergenic | 40.0% |
!! | ATGTTTGGTTCCACTTTTGG+AGG | - | chr1.3:33482632-33482651 | MS.gene93325:CDS | 40.0% |
!! | CAAGTTGGTCACTCAATTTC+TGG | - | chr1.3:33485580-33485599 | MS.gene93325:CDS | 40.0% |
!! | GCCAAAATTGACTCTGAAAC+TGG | - | chr1.3:33485162-33485181 | MS.gene93325:intron | 40.0% |
!! | TATGTTTGGTCCACTTTTGG+AGG | + | chr1.3:33482989-33483008 | None:intergenic | 40.0% |
!!! | AATTTTGGCTCCTCCAAAAG+TGG | - | chr1.3:33482976-33482995 | MS.gene93325:CDS | 40.0% |
AATTGCATGCTTCCTCTCTC+TGG | - | chr1.3:33484187-33484206 | MS.gene93325:intron | 45.0% | |
ACCAAAGGTTGGGTAGTAAG+GGG | - | chr1.3:33483104-33483123 | MS.gene93325:intron | 45.0% | |
AGAAATAGTCACCCAGAGAG+AGG | + | chr1.3:33484202-33484221 | None:intergenic | 45.0% | |
AGAGTGGAAAGACGAGATGA+CGG | + | chr1.3:33482152-33482171 | None:intergenic | 45.0% | |
ATAAGCCTCTCTTGTTCACC+TGG | - | chr1.3:33484860-33484879 | MS.gene93325:intron | 45.0% | |
ATACGATCTAACACCGCGAA+TGG | - | chr1.3:33482113-33482132 | MS.gene93325:CDS | 45.0% | |
ATGGCGCACAAAAGAAGATG+AGG | - | chr1.3:33484468-33484487 | MS.gene93325:intron | 45.0% | |
ATTGCATGCTTCCTCTCTCT+GGG | - | chr1.3:33484188-33484207 | MS.gene93325:intron | 45.0% | |
CAGCATGACAAGCAAGAAAG+TGG | + | chr1.3:33483865-33483884 | None:intergenic | 45.0% | |
CGACGATAACCACATCCTTA+AGG | - | chr1.3:33482200-33482219 | MS.gene93325:intron | 45.0% | |
CTACCAAAGGTTGGGTAGTA+AGG | - | chr1.3:33483102-33483121 | MS.gene93325:intron | 45.0% | |
CTACGTTCAACCATATCCTG+AGG | + | chr1.3:33482309-33482328 | None:intergenic | 45.0% | |
CTCAGGATATGGTTGAACGT+AGG | - | chr1.3:33482307-33482326 | MS.gene93325:intron | 45.0% | |
GAATGCATTATGGGGAAAGC+TGG | - | chr1.3:33483732-33483751 | MS.gene93325:CDS | 45.0% | |
GATCAATGGCACAGAAGTTG+AGG | + | chr1.3:33484895-33484914 | None:intergenic | 45.0% | |
GCAAAACTGGGATATTGCTC+TGG | - | chr1.3:33483771-33483790 | MS.gene93325:CDS | 45.0% | |
GCAGCTGATAGACCATACAA+AGG | - | chr1.3:33485538-33485557 | MS.gene93325:CDS | 45.0% | |
TACAAGTGCCAGTGTTGTGT+GGG | + | chr1.3:33485335-33485354 | None:intergenic | 45.0% | |
TAGCTTCACGCACCTTTGTT+TGG | - | chr1.3:33482728-33482747 | MS.gene93325:intron | 45.0% | |
TCAAGGAACTCGTCCCTTAA+TGG | + | chr1.3:33484722-33484741 | None:intergenic | 45.0% | |
TCGACAATGCATACTTGTCC+TGG | + | chr1.3:33484047-33484066 | None:intergenic | 45.0% | |
TCGTTGATGTATCCTGCAGT+AGG | + | chr1.3:33484771-33484790 | None:intergenic | 45.0% | |
TGGATTGTGAATCTCATCCG+TGG | - | chr1.3:33485126-33485145 | MS.gene93325:intron | 45.0% | |
TGGCGCACAAAAGAAGATGA+GGG | - | chr1.3:33484469-33484488 | MS.gene93325:intron | 45.0% | |
TTATTGTCAACAAGCGCAGG+AGG | - | chr1.3:33484342-33484361 | MS.gene93325:intron | 45.0% | |
! | AACAAATTAAGGCATCCGGG+GGG | + | chr1.3:33484108-33484127 | None:intergenic | 45.0% |
! | ACGCACCTTTGTTTGGCATT+TGG | - | chr1.3:33482735-33482754 | MS.gene93325:intron | 45.0% |
! | TCCACACCTTTTGCGATACT+TGG | - | chr1.3:33484310-33484329 | MS.gene93325:intron | 45.0% |
! | TTCTGAAGAAACGCAACCAG+AGG | + | chr1.3:33482378-33482397 | None:intergenic | 45.0% |
!! | AAGTTGAGGCCTGTTTTTCC+AGG | + | chr1.3:33484881-33484900 | None:intergenic | 45.0% |
!! | CGATCTTAGCCTTAAGGATG+TGG | + | chr1.3:33482212-33482231 | None:intergenic | 45.0% |
!! | AATAAATAATTAATTAATGT+TGG | - | chr1.3:33483893-33483912 | MS.gene93325:intron | 5.0% |
ATTACGAGGAGGCTGAGAGA+TGG | - | chr1.3:33485106-33485125 | MS.gene93325:intron | 50.0% | |
CCAAAGGTTGGGTAGTAAGG+GGG | - | chr1.3:33483105-33483124 | MS.gene93325:intron | 50.0% | |
CCAAGTATCCCACACAACAC+TGG | - | chr1.3:33485324-33485343 | MS.gene93325:CDS | 50.0% | |
CCAGTGTTGTGTGGGATACT+TGG | + | chr1.3:33485327-33485346 | None:intergenic | 50.0% | |
CTACAAGTGCCAGTGTTGTG+TGG | + | chr1.3:33485336-33485355 | None:intergenic | 50.0% | |
CTCAATTCCTGAACAGCAGC+AGG | + | chr1.3:33482402-33482421 | None:intergenic | 50.0% | |
GGAAGAGCTCAATCGCTTGA+AGG | - | chr1.3:33483792-33483811 | MS.gene93325:intron | 50.0% | |
GGACCCCATTACTGAGTTTC+TGG | - | chr1.3:33484418-33484437 | MS.gene93325:intron | 50.0% | |
GGACGTTAAGGGCCTTTGTA+TGG | + | chr1.3:33485553-33485572 | None:intergenic | 50.0% | |
GGTTTCTTGTGTCAGTTCGG+TGG | - | chr1.3:33485393-33485412 | MS.gene93325:CDS | 50.0% | |
GTCTATCAGCTGCTCATACC+TGG | + | chr1.3:33485531-33485550 | None:intergenic | 50.0% | |
TCAGAATCCTGCTGCTGTTC+AGG | - | chr1.3:33482392-33482411 | MS.gene93325:intron | 50.0% | |
! | ACAAATTAAGGCATCCGGGG+GGG | + | chr1.3:33484107-33484126 | None:intergenic | 50.0% |
! | ACGAGATGACGGTCGAGATT+TGG | + | chr1.3:33482141-33482160 | None:intergenic | 50.0% |
! | CTGTGGCCAAGTATCGCAAA+AGG | + | chr1.3:33484319-33484338 | None:intergenic | 50.0% |
! | GATTGGTCCTGCACAGATAG+AGG | - | chr1.3:33483603-33483622 | MS.gene93325:intron | 50.0% |
! | GCCAAGTATCGCAAAAGGTG+TGG | + | chr1.3:33484314-33484333 | None:intergenic | 50.0% |
! | TCTGGAACAAGCACAAGCTC+AGG | - | chr1.3:33485598-33485617 | MS.gene93325:CDS | 50.0% |
!! | AAAGGTGTGGAGCACTGGTT+TGG | + | chr1.3:33484301-33484320 | None:intergenic | 50.0% |
!! | TCGAGATTTGGTGCCATTCG+CGG | + | chr1.3:33482129-33482148 | None:intergenic | 50.0% |
!! | TGGCATCAAGCTTTGAGCCA+CGG | + | chr1.3:33485146-33485165 | None:intergenic | 50.0% |
!! | TGGGTAGTAAGGGGGTGTTT+GGG | - | chr1.3:33483113-33483132 | MS.gene93325:intron | 50.0% |
!! | TTGGGTAGTAAGGGGGTGTT+TGG | - | chr1.3:33483112-33483131 | MS.gene93325:intron | 50.0% |
CCCCCTTACTACCCAACCTT+TGG | + | chr1.3:33483108-33483127 | None:intergenic | 55.0% | |
TGAAGATGCTGCTGCACCTC+TGG | - | chr1.3:33482359-33482378 | MS.gene93325:intron | 55.0% | |
! | AAATTAAGGCATCCGGGGGG+GGG | + | chr1.3:33484105-33484124 | None:intergenic | 55.0% |
! | CAAATTAAGGCATCCGGGGG+GGG | + | chr1.3:33484106-33484125 | None:intergenic | 55.0% |
! | TCGCAAAAGGTGTGGAGCAC+TGG | + | chr1.3:33484306-33484325 | None:intergenic | 55.0% |
! | AATTAAGGCATCCGGGGGGG+GGG | + | chr1.3:33484104-33484123 | None:intergenic | 60.0% |
! | ATTAAGGCATCCGGGGGGGG+GGG | + | chr1.3:33484103-33484122 | None:intergenic | 65.0% |
! | TTAAGGCATCCGGGGGGGGG+GGG | + | chr1.3:33484102-33484121 | None:intergenic | 70.0% |
! | TAAGGCATCCGGGGGGGGGG+GGG | + | chr1.3:33484101-33484120 | None:intergenic | 75.0% |
!! | AAGGCATCCGGGGGGGGGGG+GGG | + | chr1.3:33484100-33484119 | None:intergenic | 80.0% |
! | AGGCATCCGGGGGGGGGGGG+GGG | + | chr1.3:33484099-33484118 | None:intergenic | 85.0% |
! | ATCCGGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484095-33484114 | None:intergenic | 90.0% |
! | CATCCGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484096-33484115 | None:intergenic | 90.0% |
! | GCATCCGGGGGGGGGGGGGG+GGG | + | chr1.3:33484097-33484116 | None:intergenic | 90.0% |
! | GGCATCCGGGGGGGGGGGGG+GGG | + | chr1.3:33484098-33484117 | None:intergenic | 90.0% |
! | GGGGGGGGGGGGGTGGGGGA+AGG | + | chr1.3:33484079-33484098 | None:intergenic | 90.0% |
! | GGGGGGGGGGGGGGGGGGGT+GGG | + | chr1.3:33484085-33484104 | None:intergenic | 95.0% |
! | GGGGGGGGGGGGGGGGGGTG+GGG | + | chr1.3:33484084-33484103 | None:intergenic | 95.0% |
! | GGGGGGGGGGGGGGGGGTGG+GGG | + | chr1.3:33484083-33484102 | None:intergenic | 95.0% |
! | TCCGGGGGGGGGGGGGGGGG+GGG | + | chr1.3:33484094-33484113 | None:intergenic | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 33482105 | 33485631 | 33482105 | ID=MS.gene93325 |
chr1.3 | mRNA | 33482105 | 33485631 | 33482105 | ID=MS.gene93325.t1;Parent=MS.gene93325 |
chr1.3 | exon | 33485269 | 33485631 | 33485269 | ID=MS.gene93325.t1.exon1;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33485269 | 33485631 | 33485269 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33483905 | 33484132 | 33483905 | ID=MS.gene93325.t1.exon2;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33483905 | 33484132 | 33483905 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33483684 | 33483805 | 33483684 | ID=MS.gene93325.t1.exon3;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33483684 | 33483805 | 33483684 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33483234 | 33483453 | 33483234 | ID=MS.gene93325.t1.exon4;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33483234 | 33483453 | 33483234 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33482935 | 33483077 | 33482935 | ID=MS.gene93325.t1.exon5;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33482935 | 33483077 | 33482935 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33482519 | 33482656 | 33482519 | ID=MS.gene93325.t1.exon6;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33482519 | 33482656 | 33482519 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
chr1.3 | exon | 33482105 | 33482204 | 33482105 | ID=MS.gene93325.t1.exon7;Parent=MS.gene93325.t1 |
chr1.3 | CDS | 33482105 | 33482204 | 33482105 | ID=cds.MS.gene93325.t1;Parent=MS.gene93325.t1 |
Gene Sequence |
Protein sequence |