Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93354.t1 | XP_013459291.1 | 98.3 | 116 | 2 | 0 | 83 | 198 | 85 | 200 | 5.40E-62 | 247.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93354.t1 | Q8L557 | 67.6 | 105 | 34 | 0 | 84 | 188 | 65 | 169 | 2.3e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93354.t1 | A0A072UUN0 | 98.3 | 116 | 2 | 0 | 83 | 198 | 85 | 200 | 3.9e-62 | 247.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051903 | MS.gene93354 | 0.846711 | 1.83E-59 | -1.69E-46 |
| MS.gene052947 | MS.gene93354 | 0.82312 | 1.64E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene93354 | 0.816407 | 5.62E-52 | -1.69E-46 |
| MS.gene055555 | MS.gene93354 | 0.825411 | 4.76E-54 | -1.69E-46 |
| MS.gene057705 | MS.gene93354 | 0.836417 | 9.48E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93354.t1 | MTR_3g435580 | 93.467 | 199 | 11 | 1 | 1 | 197 | 1 | 199 | 1.89e-119 | 340 |
| MS.gene93354.t1 | MTR_2g094530 | 76.744 | 129 | 12 | 2 | 3 | 131 | 26 | 136 | 1.54e-52 | 167 |
| MS.gene93354.t1 | MTR_0140s0050 | 47.000 | 200 | 70 | 7 | 1 | 197 | 1 | 167 | 2.71e-41 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93354.t1 | AT5G62440 | 52.308 | 195 | 60 | 5 | 1 | 188 | 1 | 169 | 1.70e-49 | 161 |
| MS.gene93354.t1 | AT5G62440 | 58.571 | 140 | 42 | 1 | 79 | 218 | 60 | 183 | 1.13e-48 | 159 |
Find 77 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGAAACCACGTCGTCTT+TGG | 0.133610 | 3.2:+26849336 | None:intergenic |
| CAAAACGTTTGGTTCTTCTT+TGG | 0.240104 | 3.2:-26849197 | MS.gene93354:CDS |
| GATTTCAATTGCATCTCTTC+TGG | 0.274351 | 3.2:+26847636 | None:intergenic |
| TTCGAAACCACGTCGTCTTT+GGG | 0.283730 | 3.2:+26849337 | None:intergenic |
| GGCAGAGGAAGGGGTGGAAG+AGG | 0.288084 | 3.2:-26847555 | MS.gene93354:CDS |
| CTCTGCTTCTTCTTCTTCCC+TGG | 0.300197 | 3.2:+26849363 | None:intergenic |
| AGAAGAAAGGTTGGAGAAGT+TGG | 0.318089 | 3.2:-26849281 | MS.gene93354:CDS |
| GGTGGTGGAGGAAAGCATTA+TGG | 0.319668 | 3.2:-26847588 | MS.gene93354:CDS |
| CAAAGAAGAACCAAACGTTT+TGG | 0.321184 | 3.2:+26849198 | None:intergenic |
| CCTACGCCAATCTTTCTATC+AGG | 0.325692 | 3.2:+26847783 | None:intergenic |
| GGTGGTGGTGGTCGTGGAAG+AGG | 0.332339 | 3.2:-26847522 | MS.gene93354:CDS |
| GTGTTGGGATCGACGATTTC+GGG | 0.343500 | 3.2:+26849448 | None:intergenic |
| GGAAATGGTGGCAGAGGAAG+GGG | 0.363172 | 3.2:-26847564 | MS.gene93354:CDS |
| GGTGTTGGGATCGACGATTT+CGG | 0.369010 | 3.2:+26849447 | None:intergenic |
| AGCGAGGGTGGTCGCGAACT+TGG | 0.371048 | 3.2:+26847748 | None:intergenic |
| GTAGGTGCTATTTCCTCATC+AGG | 0.377430 | 3.2:-26847719 | MS.gene93354:CDS |
| GGTGGCGGCGACGGTGGTGT+TGG | 0.382999 | 3.2:+26849432 | None:intergenic |
| TTATATGATCCACACACTTT+CGG | 0.387200 | 3.2:+26847667 | None:intergenic |
| TTCACAAATTTCTTCATGCT+TGG | 0.392802 | 3.2:-26849159 | MS.gene93354:CDS |
| AACAAGAAGTTTGGTGGTGG+TGG | 0.393287 | 3.2:-26847606 | MS.gene93354:CDS |
| TGGCGCGGTGGTGGTGGTCG+TGG | 0.406520 | 3.2:-26847528 | MS.gene93354:CDS |
| GTGGCGGCGACGGTGGTGTT+GGG | 0.407049 | 3.2:+26849433 | None:intergenic |
| AAGAAGTTTGGTGGTGGTGG+TGG | 0.407943 | 3.2:-26847603 | MS.gene93354:CDS |
| AGAGGAGGTTGGCGCGGTGG+TGG | 0.415258 | 3.2:-26847537 | MS.gene93354:CDS |
| GGAGGTTGGCGCGGTGGTGG+TGG | 0.415283 | 3.2:-26847534 | MS.gene93354:CDS |
| ATCAGTGGAAGAAGAAAGGT+TGG | 0.420672 | 3.2:-26849290 | MS.gene93354:CDS |
| GTGGTGGTGGTCGTGGAAGA+GGG | 0.421362 | 3.2:-26847521 | MS.gene93354:CDS |
| TGGTGGTGGTCGTGGAAGAG+GGG | 0.421459 | 3.2:-26847520 | MS.gene93354:CDS |
| AGTCCAAAGAAAAGCGTGCC+AGG | 0.428299 | 3.2:-26849381 | MS.gene93354:CDS |
| GAGGAAATGGTGGCAGAGGA+AGG | 0.430070 | 3.2:-26847566 | MS.gene93354:CDS |
| GGTGGTGGTCGTGGAAGAGG+GGG | 0.437353 | 3.2:-26847519 | MS.gene93354:CDS |
| GGAAGAGGAGGTTGGCGCGG+TGG | 0.438451 | 3.2:-26847540 | MS.gene93354:CDS |
| GGAAAGCATTATGGAGGAAA+TGG | 0.440043 | 3.2:-26847579 | MS.gene93354:CDS |
| AATTTGGGACCCAAAACGTT+TGG | 0.448596 | 3.2:-26849208 | MS.gene93354:CDS |
| AACTTCCATGTCTACGGTGG+CGG | 0.451314 | 3.2:+26849417 | None:intergenic |
| TCTGAGGGGAACAAGAAGTT+TGG | 0.454847 | 3.2:-26847615 | MS.gene93354:CDS |
| AGAGGAAGGGGTGGAAGAGG+AGG | 0.464178 | 3.2:-26847552 | MS.gene93354:CDS |
| CATGTCTACGGTGGCGGCGA+CGG | 0.465197 | 3.2:+26849423 | None:intergenic |
| GCAGAACCTGATAGAAAGAT+TGG | 0.466237 | 3.2:-26847789 | MS.gene93354:CDS |
| AAAGAAGAAAAGGAAGCATC+TGG | 0.472258 | 3.2:-26849238 | MS.gene93354:CDS |
| GTATGAGCACACGATGTTGC+TGG | 0.478639 | 3.2:-26847832 | MS.gene93354:CDS |
| CAATTGCATCTCTTCTGGCA+AGG | 0.483061 | 3.2:+26847641 | None:intergenic |
| GGGATCGACGATTTCGGGAG+CGG | 0.491201 | 3.2:+26849453 | None:intergenic |
| GGTGGAAGAGGAGGTTGGCG+CGG | 0.493351 | 3.2:-26847543 | MS.gene93354:CDS |
| TTGCTGGAATTGCTCAAGAA+TGG | 0.501210 | 3.2:-26847816 | MS.gene93354:CDS |
| AGGAAATGGTGGCAGAGGAA+GGG | 0.501251 | 3.2:-26847565 | MS.gene93354:CDS |
| AATTGCATCTCTTCTGGCAA+GGG | 0.502964 | 3.2:+26847642 | None:intergenic |
| GTCTACGGTGGCGGCGACGG+TGG | 0.513209 | 3.2:+26849426 | None:intergenic |
| GAAGGGGTGGAAGAGGAGGT+TGG | 0.517256 | 3.2:-26847548 | MS.gene93354:CDS |
| AATGGTGGCAGAGGAAGGGG+TGG | 0.521908 | 3.2:-26847561 | MS.gene93354:CDS |
| GAGATGCAATTGAAATCTGA+GGG | 0.531760 | 3.2:-26847630 | MS.gene93354:CDS |
| TGCTGGAATTGCTCAAGAAT+GGG | 0.536228 | 3.2:-26847815 | MS.gene93354:CDS |
| CGTCGCCGCCACCGTAGACA+TGG | 0.538541 | 3.2:-26849422 | MS.gene93354:CDS |
| TATGGAGGAAATGGTGGCAG+AGG | 0.549364 | 3.2:-26847570 | MS.gene93354:CDS |
| AGAGATGCAATTGAAATCTG+AGG | 0.552943 | 3.2:-26847631 | MS.gene93354:CDS |
| CAGGGAAGAAGAAGAAGCAG+AGG | 0.557826 | 3.2:-26849362 | MS.gene93354:CDS |
| CCTGATAGAAAGATTGGCGT+AGG | 0.562455 | 3.2:-26847783 | MS.gene93354:CDS |
| TTGTTCACGTTGAGATTCTG+AGG | 0.570134 | 3.2:+26849136 | None:intergenic |
| GAGGGGAACAAGAAGTTTGG+TGG | 0.580350 | 3.2:-26847612 | MS.gene93354:CDS |
| TTTCAGCTTCCGAAAGTGTG+TGG | 0.599505 | 3.2:-26847676 | MS.gene93354:CDS |
| CGGTGTCATCTTCCCTGATG+AGG | 0.600545 | 3.2:+26847706 | None:intergenic |
| TCAGAATCTCAACGTGAACA+AGG | 0.603175 | 3.2:-26849134 | MS.gene93354:intron |
| GGTGGAGGAAAGCATTATGG+AGG | 0.604832 | 3.2:-26847585 | MS.gene93354:CDS |
| GGGAACAAGAAGTTTGGTGG+TGG | 0.606840 | 3.2:-26847609 | MS.gene93354:CDS |
| GTCCAAAGAAAAGCGTGCCA+GGG | 0.611993 | 3.2:-26849380 | MS.gene93354:CDS |
| AGCACCTACTGTTATAGCGA+GGG | 0.618289 | 3.2:+26847733 | None:intergenic |
| CTGATAGAAAGATTGGCGTA+GGG | 0.621780 | 3.2:-26847782 | MS.gene93354:CDS |
| TTCAACTTCCATGTCTACGG+TGG | 0.626511 | 3.2:+26849414 | None:intergenic |
| ACCTACTGTTATAGCGAGGG+TGG | 0.640894 | 3.2:+26847736 | None:intergenic |
| AAGCATTATGGAGGAAATGG+TGG | 0.643534 | 3.2:-26847576 | MS.gene93354:CDS |
| TAGCACCTACTGTTATAGCG+AGG | 0.657357 | 3.2:+26847732 | None:intergenic |
| TAGGTGCTATTTCCTCATCA+GGG | 0.664836 | 3.2:-26847718 | MS.gene93354:CDS |
| GAAGAAAGCTAAAGTAGACG+AGG | 0.695132 | 3.2:-26849317 | MS.gene93354:CDS |
| TCGGAAGCTGAAATCATCAG+CGG | 0.705331 | 3.2:+26847686 | None:intergenic |
| ACCACCCTCGCTATAACAGT+AGG | 0.706414 | 3.2:-26847737 | MS.gene93354:CDS |
| AGATGCAATTGAAATCTGAG+GGG | 0.721407 | 3.2:-26847629 | MS.gene93354:CDS |
| AGAGGAACCCAAAGACGACG+TGG | 0.731204 | 3.2:-26849344 | MS.gene93354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTAATCTTTTTTA+AGG | - | chr3.2:26848591-26848610 | MS.gene93354:intron | 10.0% |
| !!! | GTTTTTTTAATCTTTTTTAA+GGG | - | chr3.2:26848592-26848611 | MS.gene93354:intron | 10.0% |
| !!! | CATATCAAACATAATTTTAA+TGG | + | chr3.2:26848098-26848117 | None:intergenic | 15.0% |
| !! | ATCTCAGTATATTTAAACAT+TGG | + | chr3.2:26848841-26848860 | None:intergenic | 20.0% |
| !!! | AAAACTGTTTTCATAATTTC+TGG | + | chr3.2:26848282-26848301 | None:intergenic | 20.0% |
| !!! | AATCAGTTTATTTGGATTTT+TGG | - | chr3.2:26848334-26848353 | MS.gene93354:intron | 20.0% |
| !!! | GAAATATTTTGAATTCGATT+TGG | - | chr3.2:26848017-26848036 | MS.gene93354:intron | 20.0% |
| !!! | TAACATGTTCATTTATTTTG+TGG | - | chr3.2:26848867-26848886 | MS.gene93354:intron | 20.0% |
| ! | AATACATAAACAAGTCAATG+TGG | + | chr3.2:26849114-26849133 | None:intergenic | 25.0% |
| ! | ATAATGAAAACAGAGAACAA+TGG | + | chr3.2:26849025-26849044 | None:intergenic | 25.0% |
| ! | GTGCATATAATCAGTTTATT+TGG | - | chr3.2:26848326-26848345 | MS.gene93354:intron | 25.0% |
| ! | TTTACTTGATCTATATGGTT+TGG | - | chr3.2:26847913-26847932 | MS.gene93354:intron | 25.0% |
| !! | ATAAGTTAAATCTTCTGGTT+TGG | - | chr3.2:26848508-26848527 | MS.gene93354:intron | 25.0% |
| !! | ATTTTCGATTAACAGAGTTT+TGG | - | chr3.2:26847964-26847983 | MS.gene93354:intron | 25.0% |
| !! | TGCAGTTGATATAAAGTTTA+GGG | - | chr3.2:26848125-26848144 | MS.gene93354:intron | 25.0% |
| !! | TGTCATTTACTTGATCTATA+TGG | - | chr3.2:26847908-26847927 | MS.gene93354:intron | 25.0% |
| !!! | CTTTGCTTATTTTCATTTCA+TGG | - | chr3.2:26848748-26848767 | MS.gene93354:intron | 25.0% |
| !!! | TTTTGAATTCGATTTGGTTA+AGG | - | chr3.2:26848023-26848042 | MS.gene93354:intron | 25.0% |
| AAAAATCAGTGGAAGAAGAA+AGG | - | chr3.2:26847675-26847694 | MS.gene93354:CDS | 30.0% | |
| AGGTGATGAAAAAGAAGAAA+AGG | - | chr3.2:26847721-26847740 | MS.gene93354:CDS | 30.0% | |
| ATCATTGTCATGACATACAT+AGG | + | chr3.2:26848712-26848731 | None:intergenic | 30.0% | |
| CAAATCATCTATGGTTTAAG+AGG | + | chr3.2:26848946-26848965 | None:intergenic | 30.0% | |
| CTCTTAAACCATAGATGATT+TGG | - | chr3.2:26848944-26848963 | MS.gene93354:intron | 30.0% | |
| GCTTGATAAGTTAAATCTTC+TGG | - | chr3.2:26848503-26848522 | MS.gene93354:intron | 30.0% | |
| TCATTGTCATGACATACATA+GGG | + | chr3.2:26848711-26848730 | None:intergenic | 30.0% | |
| TTATATGATCCACACACTTT+CGG | + | chr3.2:26849305-26849324 | None:intergenic | 30.0% | |
| TTCACAAATTTCTTCATGCT+TGG | - | chr3.2:26847810-26847829 | MS.gene93354:CDS | 30.0% | |
| ! | AAAGAAGAACCAAACGTTTT+GGG | + | chr3.2:26847773-26847792 | None:intergenic | 30.0% |
| ! | GTGCAGTTGATATAAAGTTT+AGG | - | chr3.2:26848124-26848143 | MS.gene93354:intron | 30.0% |
| ! | TGTGTTCATTTTACCTTGAT+GGG | - | chr3.2:26848193-26848212 | MS.gene93354:intron | 30.0% |
| ! | TTTGAAGTAAACAACTGTGA+TGG | - | chr3.2:26848221-26848240 | MS.gene93354:intron | 30.0% |
| !! | GCTTATTTTCATTTCATGGT+TGG | - | chr3.2:26848752-26848771 | MS.gene93354:intron | 30.0% |
| !! | TAAACCATAGATGATTTGGT+CGG | - | chr3.2:26848948-26848967 | MS.gene93354:intron | 30.0% |
| ACTTACTGTCCTTGGTTAAA+AGG | + | chr3.2:26848458-26848477 | None:intergenic | 35.0% | |
| AGAGATGCAATTGAAATCTG+AGG | - | chr3.2:26849338-26849357 | MS.gene93354:CDS | 35.0% | |
| AGATGCAATTGAAATCTGAG+GGG | - | chr3.2:26849340-26849359 | MS.gene93354:CDS | 35.0% | |
| ATAAATGCTGATCTTGCTTG+TGG | - | chr3.2:26848900-26848919 | MS.gene93354:intron | 35.0% | |
| GAGATGCAATTGAAATCTGA+GGG | - | chr3.2:26849339-26849358 | MS.gene93354:CDS | 35.0% | |
| GATTTCAATTGCATCTCTTC+TGG | + | chr3.2:26849336-26849355 | None:intergenic | 35.0% | |
| GTAGCAGTTCAAACATTATG+TGG | + | chr3.2:26848819-26848838 | None:intergenic | 35.0% | |
| TCTATGGTTTAAGAGGACTA+CGG | + | chr3.2:26848939-26848958 | None:intergenic | 35.0% | |
| TGACAATGATGTTGACAACT+TGG | - | chr3.2:26848722-26848741 | MS.gene93354:intron | 35.0% | |
| TGTTGAGGCTAATCAAGATA+TGG | - | chr3.2:26848641-26848660 | MS.gene93354:intron | 35.0% | |
| ! | ACATAGTTGTCTGAAACTAC+AGG | - | chr3.2:26848667-26848686 | MS.gene93354:intron | 35.0% |
| ! | CAAAGAAGAACCAAACGTTT+TGG | + | chr3.2:26847774-26847793 | None:intergenic | 35.0% |
| ! | CATAGTTGTCTGAAACTACA+GGG | - | chr3.2:26848668-26848687 | MS.gene93354:intron | 35.0% |
| ! | GTGTGTTCATTTTACCTTGA+TGG | - | chr3.2:26848192-26848211 | MS.gene93354:intron | 35.0% |
| ! | GTTTTCAACTTCCATGTCTA+CGG | + | chr3.2:26847561-26847580 | None:intergenic | 35.0% |
| ! | TACTCTTCACCTTTTAACCA+AGG | - | chr3.2:26848446-26848465 | MS.gene93354:intron | 35.0% |
| !! | AAAGAAGAAAAGGAAGCATC+TGG | - | chr3.2:26847731-26847750 | MS.gene93354:CDS | 35.0% |
| !! | CAAAACGTTTGGTTCTTCTT+TGG | - | chr3.2:26847772-26847791 | MS.gene93354:CDS | 35.0% |
| !!! | AGCATCTGGTTTTGTGAATT+TGG | - | chr3.2:26847745-26847764 | MS.gene93354:CDS | 35.0% |
| !!! | GCATCTGGTTTTGTGAATTT+GGG | - | chr3.2:26847746-26847765 | MS.gene93354:CDS | 35.0% |
| AACTGTCTCATATCCAACCA+AGG | + | chr3.2:26848994-26849013 | None:intergenic | 40.0% | |
| AAGCATTATGGAGGAAATGG+TGG | - | chr3.2:26849393-26849412 | MS.gene93354:CDS | 40.0% | |
| AATTGCATCTCTTCTGGCAA+GGG | + | chr3.2:26849330-26849349 | None:intergenic | 40.0% | |
| ACTTCAAAAGTCTCCCATCA+AGG | + | chr3.2:26848209-26848228 | None:intergenic | 40.0% | |
| AGAAGAAAGGTTGGAGAAGT+TGG | - | chr3.2:26847688-26847707 | MS.gene93354:CDS | 40.0% | |
| AGTAGACGAGGAAAAATCAG+TGG | - | chr3.2:26847664-26847683 | MS.gene93354:CDS | 40.0% | |
| ATCAGTGGAAGAAGAAAGGT+TGG | - | chr3.2:26847679-26847698 | MS.gene93354:CDS | 40.0% | |
| CTGATAGAAAGATTGGCGTA+GGG | - | chr3.2:26849187-26849206 | MS.gene93354:CDS | 40.0% | |
| GAAGAAAGCTAAAGTAGACG+AGG | - | chr3.2:26847652-26847671 | MS.gene93354:CDS | 40.0% | |
| GAGAAGTTGGAGAAAAACGA+AGG | - | chr3.2:26847701-26847720 | MS.gene93354:CDS | 40.0% | |
| GCAGAACCTGATAGAAAGAT+TGG | - | chr3.2:26849180-26849199 | MS.gene93354:CDS | 40.0% | |
| GTTACCGACCAAATCATCTA+TGG | + | chr3.2:26848955-26848974 | None:intergenic | 40.0% | |
| TCAGAATCTCAACGTGAACA+AGG | - | chr3.2:26847835-26847854 | MS.gene93354:intron | 40.0% | |
| TCCTTTCAACTTACTGTCCT+TGG | + | chr3.2:26848466-26848485 | None:intergenic | 40.0% | |
| TGCTGGAATTGCTCAAGAAT+GGG | - | chr3.2:26849154-26849173 | MS.gene93354:CDS | 40.0% | |
| TGTCATGACATACATAGGGT+CGG | + | chr3.2:26848707-26848726 | None:intergenic | 40.0% | |
| TTGCTGGAATTGCTCAAGAA+TGG | - | chr3.2:26849153-26849172 | MS.gene93354:CDS | 40.0% | |
| TTGTTCACGTTGAGATTCTG+AGG | + | chr3.2:26847836-26847855 | None:intergenic | 40.0% | |
| ! | AATTTGGGACCCAAAACGTT+TGG | - | chr3.2:26847761-26847780 | MS.gene93354:CDS | 40.0% |
| ! | ACCAAGGACAGTAAGTTGAA+AGG | - | chr3.2:26848462-26848481 | MS.gene93354:intron | 40.0% |
| !! | CCAACCAAGGCTTTAAGATA+GGG | + | chr3.2:26848981-26849000 | None:intergenic | 40.0% |
| !! | GGAAAGCATTATGGAGGAAA+TGG | - | chr3.2:26849390-26849409 | MS.gene93354:CDS | 40.0% |
| !! | TAGGTGCTATTTCCTCATCA+GGG | - | chr3.2:26849251-26849270 | MS.gene93354:CDS | 40.0% |
| !! | TCCAACCAAGGCTTTAAGAT+AGG | + | chr3.2:26848982-26849001 | None:intergenic | 40.0% |
| AAGGAGACGCATAAGCTGTT+TGG | - | chr3.2:26848481-26848500 | MS.gene93354:intron | 45.0% | |
| ACTCACCAAAAGGATGAGTG+TGG | + | chr3.2:26848622-26848641 | None:intergenic | 45.0% | |
| AGCACCTACTGTTATAGCGA+GGG | + | chr3.2:26849239-26849258 | None:intergenic | 45.0% | |
| CAATTGCATCTCTTCTGGCA+AGG | + | chr3.2:26849331-26849350 | None:intergenic | 45.0% | |
| CCAACCCTATCTTAAAGCCT+TGG | - | chr3.2:26848974-26848993 | MS.gene93354:intron | 45.0% | |
| CCCTATCTTAAAGCCTTGGT+TGG | - | chr3.2:26848978-26848997 | MS.gene93354:intron | 45.0% | |
| CCTACGCCAATCTTTCTATC+AGG | + | chr3.2:26849189-26849208 | None:intergenic | 45.0% | |
| CCTGATAGAAAGATTGGCGT+AGG | - | chr3.2:26849186-26849205 | MS.gene93354:CDS | 45.0% | |
| TAGCACCTACTGTTATAGCG+AGG | + | chr3.2:26849240-26849259 | None:intergenic | 45.0% | |
| TAGCCTCAACACTCACCAAA+AGG | + | chr3.2:26848632-26848651 | None:intergenic | 45.0% | |
| TCGGAAGCTGAAATCATCAG+CGG | + | chr3.2:26849286-26849305 | None:intergenic | 45.0% | |
| TCTGAGGGGAACAAGAAGTT+TGG | - | chr3.2:26849354-26849373 | MS.gene93354:CDS | 45.0% | |
| TGCTGATCTTGCTTGTGGTT+TGG | - | chr3.2:26848905-26848924 | MS.gene93354:intron | 45.0% | |
| TTCAACTTCCATGTCTACGG+TGG | + | chr3.2:26847558-26847577 | None:intergenic | 45.0% | |
| TTCGAAACCACGTCGTCTTT+GGG | + | chr3.2:26847635-26847654 | None:intergenic | 45.0% | |
| ! | GTTGTCTGAAACTACAGGGT+TGG | - | chr3.2:26848672-26848691 | MS.gene93354:intron | 45.0% |
| ! | TTTCAGCTTCCGAAAGTGTG+TGG | - | chr3.2:26849293-26849312 | MS.gene93354:CDS | 45.0% |
| !! | AACAAGAAGTTTGGTGGTGG+TGG | - | chr3.2:26849363-26849382 | MS.gene93354:CDS | 45.0% |
| !! | CATCCTTTTGGTGAGTGTTG+AGG | - | chr3.2:26848626-26848645 | MS.gene93354:intron | 45.0% |
| !! | CCAAGGCTTTAAGATAGGGT+TGG | + | chr3.2:26848977-26848996 | None:intergenic | 45.0% |
| !! | GTAGGTGCTATTTCCTCATC+AGG | - | chr3.2:26849250-26849269 | MS.gene93354:CDS | 45.0% |
| AACTTCCATGTCTACGGTGG+CGG | + | chr3.2:26847555-26847574 | None:intergenic | 50.0% | |
| ACCACCCTCGCTATAACAGT+AGG | - | chr3.2:26849232-26849251 | MS.gene93354:CDS | 50.0% | |
| ACCTACTGTTATAGCGAGGG+TGG | + | chr3.2:26849236-26849255 | None:intergenic | 50.0% | |
| AGGAAATGGTGGCAGAGGAA+GGG | - | chr3.2:26849404-26849423 | MS.gene93354:CDS | 50.0% | |
| CAGGGAAGAAGAAGAAGCAG+AGG | - | chr3.2:26847607-26847626 | MS.gene93354:CDS | 50.0% | |
| CTCTGCTTCTTCTTCTTCCC+TGG | + | chr3.2:26847609-26847628 | None:intergenic | 50.0% | |
| CTTCGAAACCACGTCGTCTT+TGG | + | chr3.2:26847636-26847655 | None:intergenic | 50.0% | |
| GAGGGGAACAAGAAGTTTGG+TGG | - | chr3.2:26849357-26849376 | MS.gene93354:CDS | 50.0% | |
| GTATGAGCACACGATGTTGC+TGG | - | chr3.2:26849137-26849156 | MS.gene93354:CDS | 50.0% | |
| GTGTTGGGATCGACGATTTC+GGG | + | chr3.2:26847524-26847543 | None:intergenic | 50.0% | |
| TATGGAGGAAATGGTGGCAG+AGG | - | chr3.2:26849399-26849418 | MS.gene93354:CDS | 50.0% | |
| ! | AGTCCAAAGAAAAGCGTGCC+AGG | - | chr3.2:26847588-26847607 | MS.gene93354:CDS | 50.0% |
| ! | GGGAACAAGAAGTTTGGTGG+TGG | - | chr3.2:26849360-26849379 | MS.gene93354:CDS | 50.0% |
| ! | GGTGTTGGGATCGACGATTT+CGG | + | chr3.2:26847525-26847544 | None:intergenic | 50.0% |
| ! | GTCCAAAGAAAAGCGTGCCA+GGG | - | chr3.2:26847589-26847608 | MS.gene93354:CDS | 50.0% |
| ! | GTCTGCCACACTCATCCTTT+TGG | - | chr3.2:26848614-26848633 | MS.gene93354:intron | 50.0% |
| ! | TTCCCTGGCACGCTTTTCTT+TGG | + | chr3.2:26847594-26847613 | None:intergenic | 50.0% |
| !! | AAGAAGTTTGGTGGTGGTGG+TGG | - | chr3.2:26849366-26849385 | MS.gene93354:CDS | 50.0% |
| !! | GGTGGAGGAAAGCATTATGG+AGG | - | chr3.2:26849384-26849403 | MS.gene93354:CDS | 50.0% |
| !! | GGTGGTGGAGGAAAGCATTA+TGG | - | chr3.2:26849381-26849400 | MS.gene93354:CDS | 50.0% |
| AGAGGAACCCAAAGACGACG+TGG | - | chr3.2:26847625-26847644 | MS.gene93354:CDS | 55.0% | |
| GAGGAAATGGTGGCAGAGGA+AGG | - | chr3.2:26849403-26849422 | MS.gene93354:CDS | 55.0% | |
| GGAAATGGTGGCAGAGGAAG+GGG | - | chr3.2:26849405-26849424 | MS.gene93354:CDS | 55.0% | |
| !! | AAGTTTGGTGGTGGTGGTGG+AGG | - | chr3.2:26849369-26849388 | MS.gene93354:CDS | 55.0% |
| !! | CGGTGTCATCTTCCCTGATG+AGG | + | chr3.2:26849266-26849285 | None:intergenic | 55.0% |
| AATGGTGGCAGAGGAAGGGG+TGG | - | chr3.2:26849408-26849427 | MS.gene93354:CDS | 60.0% | |
| AGAGGAAGGGGTGGAAGAGG+AGG | - | chr3.2:26849417-26849436 | MS.gene93354:CDS | 60.0% | |
| GAAGGGGTGGAAGAGGAGGT+TGG | - | chr3.2:26849421-26849440 | MS.gene93354:CDS | 60.0% | |
| GGGATCGACGATTTCGGGAG+CGG | + | chr3.2:26847519-26847538 | None:intergenic | 60.0% | |
| TGGTCGTGGAAGAGGGGGAA+GGG | - | chr3.2:26849455-26849474 | MS.gene93354:CDS | 60.0% | |
| !! | GTGGTGGTGGTCGTGGAAGA+GGG | - | chr3.2:26849448-26849467 | MS.gene93354:CDS | 60.0% |
| !! | TGGTGGTGGTCGTGGAAGAG+GGG | - | chr3.2:26849449-26849468 | MS.gene93354:CDS | 60.0% |
| AGCGAGGGTGGTCGCGAACT+TGG | + | chr3.2:26849224-26849243 | None:intergenic | 65.0% | |
| GGCAGAGGAAGGGGTGGAAG+AGG | - | chr3.2:26849414-26849433 | MS.gene93354:CDS | 65.0% | |
| GGTCGTGGAAGAGGGGGAAG+GGG | - | chr3.2:26849456-26849475 | MS.gene93354:CDS | 65.0% | |
| GGTGGAAGAGGAGGTTGGCG+CGG | - | chr3.2:26849426-26849445 | MS.gene93354:CDS | 65.0% | |
| GTCGTGGAAGAGGGGGAAGG+GGG | - | chr3.2:26849457-26849476 | MS.gene93354:CDS | 65.0% | |
| GTGGTCGTGGAAGAGGGGGA+AGG | - | chr3.2:26849454-26849473 | MS.gene93354:CDS | 65.0% | |
| ! | CATGTCTACGGTGGCGGCGA+CGG | + | chr3.2:26847549-26847568 | None:intergenic | 65.0% |
| ! | GGTGGTGGTCGTGGAAGAGG+GGG | - | chr3.2:26849450-26849469 | MS.gene93354:CDS | 65.0% |
| !! | GGTGGTGGTGGTCGTGGAAG+AGG | - | chr3.2:26849447-26849466 | MS.gene93354:CDS | 65.0% |
| AGAGGAGGTTGGCGCGGTGG+TGG | - | chr3.2:26849432-26849451 | MS.gene93354:CDS | 70.0% | |
| CGTCGCCGCCACCGTAGACA+TGG | - | chr3.2:26847547-26847566 | MS.gene93354:CDS | 70.0% | |
| GGAAGAGGAGGTTGGCGCGG+TGG | - | chr3.2:26849429-26849448 | MS.gene93354:CDS | 70.0% | |
| GTGGCGGCGACGGTGGTGTT+GGG | + | chr3.2:26847539-26847558 | None:intergenic | 70.0% | |
| ! | GGAGGTTGGCGCGGTGGTGG+TGG | - | chr3.2:26849435-26849454 | MS.gene93354:CDS | 75.0% |
| ! | GGTGGCGGCGACGGTGGTGT+TGG | + | chr3.2:26847540-26847559 | None:intergenic | 75.0% |
| ! | GTCTACGGTGGCGGCGACGG+TGG | + | chr3.2:26847546-26847565 | None:intergenic | 75.0% |
| !! | TGGCGCGGTGGTGGTGGTCG+TGG | - | chr3.2:26849441-26849460 | MS.gene93354:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 26847503 | 26849488 | 26847503 | ID=MS.gene93354 |
| chr3.2 | mRNA | 26847503 | 26849488 | 26847503 | ID=MS.gene93354.t1;Parent=MS.gene93354 |
| chr3.2 | exon | 26849135 | 26849488 | 26849135 | ID=MS.gene93354.t1.exon1;Parent=MS.gene93354.t1 |
| chr3.2 | CDS | 26849135 | 26849488 | 26849135 | ID=cds.MS.gene93354.t1;Parent=MS.gene93354.t1 |
| chr3.2 | exon | 26847503 | 26847853 | 26847503 | ID=MS.gene93354.t1.exon2;Parent=MS.gene93354.t1 |
| chr3.2 | CDS | 26847503 | 26847853 | 26847503 | ID=cds.MS.gene93354.t1;Parent=MS.gene93354.t1 |
| Gene Sequence |
| Protein sequence |
