Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93545.t1 | XP_013459112.1 | 100 | 35 | 0 | 0 | 1 | 35 | 14 | 48 | 1.10E-07 | 67.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93545.t1 | A0A072V4P7 | 100.0 | 35 | 0 | 0 | 1 | 35 | 14 | 48 | 7.6e-08 | 67.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053287 | MS.gene93545 | 0.814477 | 1.51E-51 | -1.69E-46 |
| MS.gene053288 | MS.gene93545 | 0.807308 | 5.39E-50 | -1.69E-46 |
| MS.gene053289 | MS.gene93545 | 0.814422 | 1.55E-51 | -1.69E-46 |
| MS.gene053568 | MS.gene93545 | 0.807389 | 5.18E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93545.t1 | MTR_3g026230 | 89.388 | 245 | 20 | 1 | 1 | 245 | 14 | 252 | 9.13e-121 | 344 |
| MS.gene93545.t1 | MTR_3g026330 | 55.255 | 333 | 59 | 5 | 1 | 245 | 14 | 344 | 3.16e-78 | 239 |
| MS.gene93545.t1 | MTR_3g026290 | 54.179 | 347 | 57 | 7 | 1 | 245 | 14 | 360 | 9.25e-77 | 236 |
| MS.gene93545.t1 | MTR_3g026160 | 80.000 | 165 | 17 | 3 | 1 | 149 | 14 | 178 | 9.17e-64 | 197 |
| MS.gene93545.t1 | MTR_3g026160 | 73.154 | 149 | 33 | 4 | 102 | 245 | 38 | 184 | 4.81e-42 | 142 |
| MS.gene93545.t1 | MTR_3g026240 | 54.945 | 91 | 37 | 2 | 1 | 89 | 14 | 102 | 1.51e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93545.t1 | AT5G09530 | 55.634 | 284 | 64 | 9 | 13 | 239 | 30 | 308 | 2.39e-54 | 179 |
| MS.gene93545.t1 | AT5G09530 | 59.184 | 245 | 68 | 8 | 22 | 238 | 100 | 340 | 2.68e-50 | 168 |
| MS.gene93545.t1 | AT5G09530 | 56.075 | 214 | 57 | 7 | 24 | 204 | 157 | 366 | 2.48e-36 | 132 |
| MS.gene93545.t1 | AT5G09530 | 55.556 | 108 | 38 | 4 | 24 | 123 | 265 | 370 | 5.54e-14 | 70.9 |
| MS.gene93545.t1 | AT5G09520 | 52.000 | 125 | 45 | 4 | 1 | 120 | 16 | 130 | 8.12e-22 | 88.2 |
| MS.gene93545.t1 | AT5G09520 | 55.769 | 104 | 36 | 2 | 134 | 237 | 37 | 130 | 2.87e-18 | 78.6 |
| MS.gene93545.t1 | AT5G09520 | 54.902 | 102 | 39 | 2 | 118 | 219 | 34 | 128 | 8.38e-17 | 74.7 |
| MS.gene93545.t1 | AT5G09520 | 55.914 | 93 | 34 | 1 | 153 | 245 | 34 | 119 | 2.87e-15 | 70.9 |
| MS.gene93545.t1 | AT5G09520 | 54.737 | 95 | 36 | 2 | 92 | 186 | 41 | 128 | 2.41e-14 | 68.2 |
Find 90 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.077856 | 3.4:-18557858 | None:intergenic |
| TCGGGTATCTTTGGAATTTC+TGG | 0.088558 | 3.4:-18557621 | None:intergenic |
| GGAACATCTTTAGGAGTTTC+AGG | 0.202854 | 3.4:-18557981 | None:intergenic |
| AATTCAGGGGCATTAAATTT+AGG | 0.233034 | 3.4:-18557663 | None:intergenic |
| TCAGGTACTTTAGGTAATTC+TGG | 0.242157 | 3.4:-18557447 | None:intergenic |
| TTAGGAGTTTCAGGGAATTT+AGG | 0.242346 | 3.4:-18557972 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3.4:-18557876 | None:intergenic |
| ACTTTAGGTGGCTCGGGTTT+TGG | 0.256109 | 3.4:-18557687 | None:intergenic |
| AGCTCAGGTATGGGCAATTC+GGG | 0.260641 | 3.4:-18557573 | None:intergenic |
| TTTGGCAATTCGGGTATCTT+TGG | 0.263000 | 3.4:-18557630 | None:intergenic |
| AATTCTGGCTTTGGCAATTC+AGG | 0.265103 | 3.4:-18557432 | None:intergenic |
| TCAGGTACCTTAGGCAATTC+AGG | 0.275353 | 3.4:-18557414 | None:intergenic |
| TTTGGAAGTTCAGGTACTTT+AGG | 0.279783 | 3.4:-18557456 | None:intergenic |
| AGTTCAGGCTTTGTCAATTC+AGG | 0.281138 | 3.4:-18557909 | None:intergenic |
| TCAGGTACCTTAGGGATATC+TGG | 0.288152 | 3.4:-18557759 | None:intergenic |
| TTTGGCAATTCAGGGACTTT+AGG | 0.301883 | 3.4:-18557702 | None:intergenic |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3.4:-18557597 | None:intergenic |
| TTTGTCAATTCAGGTATCTT+AGG | 0.317967 | 3.4:-18557900 | None:intergenic |
| TACCTTTGGTATTTCTGGCT+TGG | 0.319635 | 3.4:-18557853 | None:intergenic |
| AATTTAGGTAACTCGGGTTT+TGG | 0.322053 | 3.4:-18557957 | None:intergenic |
| ACCTTTGGTATTTCTGGCTT+GGG | 0.325986 | 3.4:-18557852 | None:intergenic |
| ACCTTAGGTAGTTCATGTTT+TGG | 0.327549 | 3.4:-18557720 | None:intergenic |
| GTATTGGTTGGAACATCTTT+AGG | 0.328990 | 3.4:-18557990 | None:intergenic |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3.4:-18557546 | None:intergenic |
| TACCTTAGGGATATCTGGTT+TGG | 0.332667 | 3.4:-18557754 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+AGG | 0.339853 | 3.4:-18557768 | None:intergenic |
| AGCTCGGGCTTTGGAAGTTC+AGG | 0.341805 | 3.4:-18557465 | None:intergenic |
| AAGTCAGACTTTGGCAATTC+GGG | 0.351787 | 3.4:-18557639 | None:intergenic |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3.4:-18557366 | None:intergenic |
| ACCTTAGGTAGCTCGGGTTT+TGG | 0.355137 | 3.4:-18557786 | None:intergenic |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3.4:-18557513 | None:intergenic |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3.4:-18557528 | None:intergenic |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3.4:-18557607 | None:intergenic |
| TTGGGCAACTCAGAGACTTT+TGG | 0.369313 | 3.4:-18557834 | None:intergenic |
| TAGCTCAGGTATGGGCAATT+CGG | 0.369917 | 3.4:-18557574 | None:intergenic |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3.4:-18557924 | None:intergenic |
| TAAGTCAGACTTTGGCAATT+CGG | 0.370863 | 3.4:-18557640 | None:intergenic |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3.4:-18557933 | None:intergenic |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3.4:-18557520 | None:intergenic |
| AGAAGCTCAGGCTTTGGTAT+AGG | 0.389563 | 3.4:-18557384 | None:intergenic |
| ACTTTAGGTAATTCTGGCTT+TGG | 0.389572 | 3.4:-18557441 | None:intergenic |
| ATCTTAAGAAGCTCAGGCTT+TGG | 0.392921 | 3.4:-18557390 | None:intergenic |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3.4:-18557529 | None:intergenic |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3.4:-18557606 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3.4:-18557867 | None:intergenic |
| AACTTAGGTAGCTCGGGCTT+TGG | 0.403695 | 3.4:-18557474 | None:intergenic |
| GACTTTAGGTAGCTCAGGTA+TGG | 0.410011 | 3.4:-18557583 | None:intergenic |
| TTCAGGGACTTTAGGTGGCT+CGG | 0.421818 | 3.4:-18557694 | None:intergenic |
| ACCTTAGGGATATCTGGTTT+GGG | 0.423518 | 3.4:-18557753 | None:intergenic |
| ATCTTAGGTAACTCTAGCTT+TGG | 0.432161 | 3.4:-18557885 | None:intergenic |
| AGTTCCAACTTAAGGAGTAT+TGG | 0.438613 | 3.4:-18558006 | None:intergenic |
| AGAGTATTACAATGGTTGTC+GGG | 0.440611 | 3.4:+18557307 | MS.gene93545:CDS |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3.4:-18557423 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+AGG | 0.444525 | 3.4:-18557801 | None:intergenic |
| TTCAGGTACCTTAGGTAGCT+CGG | 0.444849 | 3.4:-18557793 | None:intergenic |
| TCAGGAATCTTAAGAAGCTC+AGG | 0.452292 | 3.4:-18557396 | None:intergenic |
| AATTTAGGTAAGTCAGACTT+TGG | 0.455064 | 3.4:-18557648 | None:intergenic |
| AACATTAAACTTAGGTAGCT+CGG | 0.462347 | 3.4:-18557481 | None:intergenic |
| TTCAGGGAATTTAGGTAACT+CGG | 0.478958 | 3.4:-18557964 | None:intergenic |
| GGCAATTCAGGGACTTTAGG+TGG | 0.484066 | 3.4:-18557699 | None:intergenic |
| TTGGGCAACTCAGAGACCTT+AGG | 0.486272 | 3.4:-18557735 | None:intergenic |
| GACAACCATTGTAATACTCT+TGG | 0.489157 | 3.4:-18557304 | None:intergenic |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3.4:-18557489 | None:intergenic |
| ACATTAAACTTAGGTAGCTC+GGG | 0.491103 | 3.4:-18557480 | None:intergenic |
| TTGGTAATTCAGGTACCTTA+GGG | 0.494321 | 3.4:-18557767 | None:intergenic |
| GAACATCTTTAGGAGTTTCA+GGG | 0.495266 | 3.4:-18557980 | None:intergenic |
| TCAGGTACCTTAGGTAGCTC+GGG | 0.499460 | 3.4:-18557792 | None:intergenic |
| TAAGATTCCTGAATTGCCTA+AGG | 0.500552 | 3.4:+18557407 | MS.gene93545:CDS |
| TCAGGGACTTTAGGTGGCTC+GGG | 0.502047 | 3.4:-18557693 | None:intergenic |
| TCGGGGACTTTAGGTAGCTC+AGG | 0.503272 | 3.4:-18557588 | None:intergenic |
| ATGGGCAATTCGGGGAACTT+AGG | 0.510284 | 3.4:-18557564 | None:intergenic |
| AACCATTGTAATACTCTTGG+CGG | 0.510875 | 3.4:-18557301 | None:intergenic |
| TTCGGGGAACTTAGGCAACT+CGG | 0.511694 | 3.4:-18557556 | None:intergenic |
| CCAACTTAAGGAGTATTGGT+TGG | 0.525013 | 3.4:-18558002 | None:intergenic |
| AAGAGTATTACAATGGTTGT+CGG | 0.526376 | 3.4:+18557306 | MS.gene93545:CDS |
| GCCAAAACATGAACTACCTA+AGG | 0.527245 | 3.4:+18557719 | MS.gene93545:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3.4:-18557519 | None:intergenic |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3.4:-18557381 | None:intergenic |
| TCAGGGAATTTAGGTAACTC+GGG | 0.549724 | 3.4:-18557963 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3.4:-18557537 | None:intergenic |
| ACCAAAACCCGAGCTACCTA+AGG | 0.574183 | 3.4:+18557785 | MS.gene93545:CDS |
| TCGGGGAACTTAGGCAACTC+GGG | 0.578462 | 3.4:-18557555 | None:intergenic |
| ACTTTAGGTAGCTCAGGTAT+GGG | 0.584387 | 3.4:-18557582 | None:intergenic |
| TTTCTGGCATAGACAATTCG+GGG | 0.611978 | 3.4:-18557605 | None:intergenic |
| GAGTATTACAATGGTTGTCG+GGG | 0.633099 | 3.4:+18557308 | MS.gene93545:CDS |
| GCCCAAACCAGATATCCCTA+AGG | 0.649847 | 3.4:+18557752 | MS.gene93545:CDS |
| ATCCGCCAAGAGTATTACAA+TGG | 0.672419 | 3.4:+18557299 | MS.gene93545:CDS |
| GCCCAAGCCAGAAATACCAA+AGG | 0.675655 | 3.4:+18557851 | MS.gene93545:CDS |
| GCTCAGGTATGGGCAATTCG+GGG | 0.707978 | 3.4:-18557572 | None:intergenic |
| TCTAGAGTCGAACATACCAG+AGG | 0.728584 | 3.4:+18557341 | MS.gene93545:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3.4:18557492-18557511 | None:intergenic | 25.0% |
| AACATTAAACTTAGGTAGCT+CGG | - | chr3.4:18557484-18557503 | None:intergenic | 30.0% | |
| AATTTAGGTAAGTCAGACTT+TGG | - | chr3.4:18557651-18557670 | None:intergenic | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3.4:18557927-18557946 | None:intergenic | 30.0% | |
| TTTGTCAATTCAGGTATCTT+AGG | - | chr3.4:18557903-18557922 | None:intergenic | 30.0% | |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3.4:18557369-18557388 | None:intergenic | 30.0% |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3.4:18557306-18557325 | MS.gene93545:CDS | 30.0% |
| !! | AATTCAGGGGCATTAAATTT+AGG | - | chr3.4:18557666-18557685 | None:intergenic | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3.4:18557610-18557629 | None:intergenic | 30.0% |
| AACCATTGTAATACTCTTGG+CGG | - | chr3.4:18557304-18557323 | None:intergenic | 35.0% | |
| ACATTAAACTTAGGTAGCTC+GGG | - | chr3.4:18557483-18557502 | None:intergenic | 35.0% | |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3.4:18557936-18557955 | None:intergenic | 35.0% | |
| GACAACCATTGTAATACTCT+TGG | - | chr3.4:18557307-18557326 | None:intergenic | 35.0% | |
| TAAGATTCCTGAATTGCCTA+AGG | + | chr3.4:18557407-18557426 | MS.gene93545:CDS | 35.0% | |
| TAAGTCAGACTTTGGCAATT+CGG | - | chr3.4:18557643-18557662 | None:intergenic | 35.0% | |
| TCAGGTACTTTAGGTAATTC+TGG | - | chr3.4:18557450-18557469 | None:intergenic | 35.0% | |
| TTAGGAGTTTCAGGGAATTT+AGG | - | chr3.4:18557975-18557994 | None:intergenic | 35.0% | |
| TTCAGGGAATTTAGGTAACT+CGG | - | chr3.4:18557967-18557986 | None:intergenic | 35.0% | |
| TTTGGAAGTTCAGGTACTTT+AGG | - | chr3.4:18557459-18557478 | None:intergenic | 35.0% | |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3.4:18557960-18557979 | None:intergenic | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3.4:18557723-18557742 | None:intergenic | 35.0% |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3.4:18557307-18557326 | MS.gene93545:CDS | 35.0% |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3.4:18557888-18557907 | None:intergenic | 35.0% |
| ! | GAACATCTTTAGGAGTTTCA+GGG | - | chr3.4:18557983-18558002 | None:intergenic | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3.4:18557770-18557789 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3.4:18557771-18557790 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3.4:18557771-18557790 | None:intergenic | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3.4:18557879-18557898 | None:intergenic | 35.0% |
| !! | ACTTTAGGTAATTCTGGCTT+TGG | - | chr3.4:18557444-18557463 | None:intergenic | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3.4:18557609-18557628 | None:intergenic | 35.0% |
| !! | GTATTGGTTGGAACATCTTT+AGG | - | chr3.4:18557993-18558012 | None:intergenic | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+TGG | - | chr3.4:18557360-18557379 | None:intergenic | 35.0% |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3.4:18557714-18557733 | None:intergenic | 35.0% |
| !!! | GTTCATGTTTTGGCAATTCA+GGG | - | chr3.4:18557713-18557732 | None:intergenic | 35.0% |
| AAGTCAGACTTTGGCAATTC+GGG | - | chr3.4:18557642-18557661 | None:intergenic | 40.0% | |
| ACTTTAGGTAGCTCAGGTAT+GGG | - | chr3.4:18557585-18557604 | None:intergenic | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3.4:18557600-18557619 | None:intergenic | 40.0% | |
| ATCTTAAGAAGCTCAGGCTT+TGG | - | chr3.4:18557393-18557412 | None:intergenic | 40.0% | |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3.4:18557308-18557327 | MS.gene93545:CDS | 40.0% | |
| GCCAAAACATGAACTACCTA+AGG | + | chr3.4:18557719-18557738 | MS.gene93545:CDS | 40.0% | |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3.4:18557757-18557776 | None:intergenic | 40.0% | |
| TCAGGAATCTTAAGAAGCTC+AGG | - | chr3.4:18557399-18557418 | None:intergenic | 40.0% | |
| TCAGGGAATTTAGGTAACTC+GGG | - | chr3.4:18557966-18557985 | None:intergenic | 40.0% | |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3.4:18557861-18557880 | None:intergenic | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3.4:18557531-18557550 | None:intergenic | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3.4:18557532-18557551 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGGACTTT+AGG | - | chr3.4:18557705-18557724 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3.4:18557426-18557445 | None:intergenic | 40.0% | |
| TTTGGCAATTCGGGTATCTT+TGG | - | chr3.4:18557633-18557652 | None:intergenic | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3.4:18557756-18557775 | None:intergenic | 40.0% |
| ! | AGTTCAGGCTTTGTCAATTC+AGG | - | chr3.4:18557912-18557931 | None:intergenic | 40.0% |
| ! | GGAACATCTTTAGGAGTTTC+AGG | - | chr3.4:18557984-18558003 | None:intergenic | 40.0% |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3.4:18557608-18557627 | None:intergenic | 40.0% |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3.4:18557435-18557454 | None:intergenic | 40.0% |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3.4:18557855-18557874 | None:intergenic | 40.0% |
| !! | ATCCGCCAAGAGTATTACAA+TGG | + | chr3.4:18557299-18557318 | MS.gene93545:CDS | 40.0% |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3.4:18557856-18557875 | None:intergenic | 40.0% |
| !! | TCGGGTATCTTTGGAATTTC+TGG | - | chr3.4:18557624-18557643 | None:intergenic | 40.0% |
| GACTTTAGGTAGCTCAGGTA+TGG | - | chr3.4:18557586-18557605 | None:intergenic | 45.0% | |
| TAGCTCAGGTATGGGCAATT+CGG | - | chr3.4:18557577-18557596 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGCAATTC+AGG | - | chr3.4:18557417-18557436 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3.4:18557762-18557781 | None:intergenic | 45.0% | |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3.4:18557549-18557568 | None:intergenic | 45.0% | |
| TTCAGGTACCTTAGGTAGCT+CGG | - | chr3.4:18557796-18557815 | None:intergenic | 45.0% | |
| ! | AGAAGCTCAGGCTTTGGTAT+AGG | - | chr3.4:18557387-18557406 | None:intergenic | 45.0% |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3.4:18557523-18557542 | None:intergenic | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3.4:18557522-18557541 | None:intergenic | 45.0% |
| ! | TCTAGAGTCGAACATACCAG+AGG | + | chr3.4:18557341-18557360 | MS.gene93545:CDS | 45.0% |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3.4:18557837-18557856 | None:intergenic | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3.4:18557507-18557526 | None:intergenic | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3.4:18557516-18557535 | None:intergenic | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3.4:18557822-18557841 | None:intergenic | 45.0% |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3.4:18557780-18557799 | None:intergenic | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3.4:18557829-18557848 | None:intergenic | 45.0% |
| !! | CTCGGGTTTTGGTAATTCAG+GGG | - | chr3.4:18557679-18557698 | None:intergenic | 45.0% |
| !! | GCTCGGGTTTTGGTAATTCA+GGG | - | chr3.4:18557680-18557699 | None:intergenic | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3.4:18557828-18557847 | None:intergenic | 45.0% |
| AACTTAGGTAGCTCGGGCTT+TGG | - | chr3.4:18557477-18557496 | None:intergenic | 50.0% | |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3.4:18557785-18557804 | MS.gene93545:CDS | 50.0% | |
| AGCTCAGGTATGGGCAATTC+GGG | - | chr3.4:18557576-18557595 | None:intergenic | 50.0% | |
| ATGGGCAATTCGGGGAACTT+AGG | - | chr3.4:18557567-18557586 | None:intergenic | 50.0% | |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3.4:18557752-18557771 | MS.gene93545:CDS | 50.0% | |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3.4:18557851-18557870 | MS.gene93545:CDS | 50.0% | |
| GGCAATTCAGGGACTTTAGG+TGG | - | chr3.4:18557702-18557721 | None:intergenic | 50.0% | |
| TCAGGTACCTTAGGTAGCTC+GGG | - | chr3.4:18557795-18557814 | None:intergenic | 50.0% | |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3.4:18557540-18557559 | None:intergenic | 50.0% | |
| TTCAGGGACTTTAGGTGGCT+CGG | - | chr3.4:18557697-18557716 | None:intergenic | 50.0% | |
| TTCGGGGAACTTAGGCAACT+CGG | - | chr3.4:18557559-18557578 | None:intergenic | 50.0% | |
| TTGGGCAACTCAGAGACCTT+AGG | - | chr3.4:18557738-18557757 | None:intergenic | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3.4:18557789-18557808 | None:intergenic | 50.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3.4:18557384-18557403 | None:intergenic | 50.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3.4:18557951-18557970 | None:intergenic | 50.0% |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3.4:18557950-18557969 | None:intergenic | 50.0% |
| !! | ACTTTAGGTGGCTCGGGTTT+TGG | - | chr3.4:18557690-18557709 | None:intergenic | 50.0% |
| !! | GGCTCGGGTTTTGGTAATTC+AGG | - | chr3.4:18557681-18557700 | None:intergenic | 50.0% |
| GCTCAGGTATGGGCAATTCG+GGG | - | chr3.4:18557575-18557594 | None:intergenic | 55.0% | |
| TCAGGGACTTTAGGTGGCTC+GGG | - | chr3.4:18557696-18557715 | None:intergenic | 55.0% | |
| TCGGGGAACTTAGGCAACTC+GGG | - | chr3.4:18557558-18557577 | None:intergenic | 55.0% | |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3.4:18557591-18557610 | None:intergenic | 55.0% | |
| !! | AGCTCGGGCTTTGGAAGTTC+AGG | - | chr3.4:18557468-18557487 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 18557282 | 18558019 | 18557282 | ID=MS.gene93545 |
| chr3.4 | mRNA | 18557282 | 18558019 | 18557282 | ID=MS.gene93545.t1;Parent=MS.gene93545 |
| chr3.4 | exon | 18557282 | 18558019 | 18557282 | ID=MS.gene93545.t1.exon1;Parent=MS.gene93545.t1 |
| chr3.4 | CDS | 18557282 | 18558019 | 18557282 | ID=cds.MS.gene93545.t1;Parent=MS.gene93545.t1 |
| Gene Sequence |
| Protein sequence |
