Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93574.t1 | XP_013459112.1 | 100 | 35 | 0 | 0 | 1 | 35 | 14 | 48 | 1.10E-07 | 67.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93574.t1 | A0A072V4P7 | 100.0 | 35 | 0 | 0 | 1 | 35 | 14 | 48 | 7.6e-08 | 67.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053287 | MS.gene93574 | 0.821475 | 3.96E-53 | -1.69E-46 |
| MS.gene053288 | MS.gene93574 | 0.816326 | 5.86E-52 | -1.69E-46 |
| MS.gene053289 | MS.gene93574 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene053568 | MS.gene93574 | 0.816608 | 5.07E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93574.t1 | MTR_3g026230 | 89.796 | 245 | 19 | 1 | 1 | 245 | 14 | 252 | 1.15e-121 | 346 |
| MS.gene93574.t1 | MTR_3g026330 | 55.556 | 333 | 58 | 5 | 1 | 245 | 14 | 344 | 2.75e-79 | 242 |
| MS.gene93574.t1 | MTR_3g026290 | 54.467 | 347 | 56 | 7 | 1 | 245 | 14 | 360 | 9.29e-78 | 239 |
| MS.gene93574.t1 | MTR_3g026160 | 76.882 | 186 | 16 | 4 | 1 | 181 | 14 | 177 | 8.35e-65 | 200 |
| MS.gene93574.t1 | MTR_3g026160 | 71.242 | 153 | 36 | 4 | 96 | 245 | 37 | 184 | 1.94e-42 | 142 |
| MS.gene93574.t1 | MTR_3g026240 | 54.945 | 91 | 37 | 2 | 1 | 89 | 14 | 102 | 1.84e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93574.t1 | AT5G09530 | 55.986 | 284 | 63 | 9 | 13 | 239 | 30 | 308 | 3.22e-55 | 181 |
| MS.gene93574.t1 | AT5G09530 | 59.592 | 245 | 67 | 8 | 22 | 238 | 100 | 340 | 3.71e-51 | 171 |
| MS.gene93574.t1 | AT5G09530 | 56.542 | 214 | 56 | 7 | 24 | 204 | 157 | 366 | 3.57e-37 | 134 |
| MS.gene93574.t1 | AT5G09530 | 56.044 | 91 | 27 | 3 | 22 | 101 | 282 | 370 | 4.48e-11 | 62.4 |
| MS.gene93574.t1 | AT5G09520 | 52.800 | 125 | 44 | 4 | 1 | 120 | 16 | 130 | 8.42e-23 | 90.5 |
| MS.gene93574.t1 | AT5G09520 | 55.769 | 104 | 36 | 2 | 134 | 237 | 37 | 130 | 3.43e-18 | 78.6 |
| MS.gene93574.t1 | AT5G09520 | 54.902 | 102 | 39 | 2 | 118 | 219 | 34 | 128 | 9.90e-17 | 74.7 |
| MS.gene93574.t1 | AT5G09520 | 55.789 | 95 | 35 | 2 | 92 | 186 | 41 | 128 | 2.61e-15 | 70.9 |
| MS.gene93574.t1 | AT5G09520 | 55.914 | 93 | 34 | 1 | 153 | 245 | 34 | 119 | 3.53e-15 | 70.5 |
| MS.gene93574.t1 | AT5G09520 | 50.515 | 97 | 36 | 2 | 86 | 177 | 41 | 130 | 2.65e-12 | 62.8 |
| MS.gene93574.t1 | AT5G09520 | 50.962 | 104 | 38 | 3 | 99 | 199 | 37 | 130 | 2.01e-11 | 60.5 |
Find 90 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGTACCTTTGGTATTTC+TGG | 0.077856 | 3.4:-18677036 | None:intergenic |
| TCGGGTATCTTTGGAATTTC+TGG | 0.088558 | 3.4:-18676799 | None:intergenic |
| GGAACATCTTTAGGAGTTTC+AGG | 0.202854 | 3.4:-18677159 | None:intergenic |
| AATTCAGGGGCATTAAATTT+AGG | 0.233034 | 3.4:-18676841 | None:intergenic |
| AGCTCAGGTTTGGGCAATTC+GGG | 0.236163 | 3.4:-18676751 | None:intergenic |
| TCAGGTACTTTAGGTAATTC+TGG | 0.242157 | 3.4:-18676625 | None:intergenic |
| TTAGGAGTTTCAGGGAATTT+AGG | 0.242346 | 3.4:-18677150 | None:intergenic |
| AACTCTAGCTTTGGTAATTC+AGG | 0.247874 | 3.4:-18677054 | None:intergenic |
| ACTTTAGGTGGCTCGGGTTT+TGG | 0.256109 | 3.4:-18676865 | None:intergenic |
| TTTGGCAATTCGGGTATCTT+TGG | 0.263000 | 3.4:-18676808 | None:intergenic |
| AATTCTGGCTTTGGCAATTC+AGG | 0.265103 | 3.4:-18676610 | None:intergenic |
| GACTTTAGGTAGCTCAGGTT+TGG | 0.265600 | 3.4:-18676761 | None:intergenic |
| TCAGGTACCTTAGGCAATTC+AGG | 0.275353 | 3.4:-18676592 | None:intergenic |
| TTTGGAAGTTCAGGTACTTT+AGG | 0.279783 | 3.4:-18676634 | None:intergenic |
| AGTTCAGGCTTTGTCAATTC+AGG | 0.281138 | 3.4:-18677087 | None:intergenic |
| TCAGGTACCTTAGGGATATC+TGG | 0.288152 | 3.4:-18676937 | None:intergenic |
| TTTGGCAATTCAGGGACTTT+AGG | 0.301883 | 3.4:-18676880 | None:intergenic |
| ATAGACAATTCGGGGACTTT+AGG | 0.311738 | 3.4:-18676775 | None:intergenic |
| TTTGTCAATTCAGGTATCTT+AGG | 0.317967 | 3.4:-18677078 | None:intergenic |
| TACCTTTGGTATTTCTGGCT+TGG | 0.319635 | 3.4:-18677031 | None:intergenic |
| AATTTAGGTAACTCGGGTTT+TGG | 0.322053 | 3.4:-18677135 | None:intergenic |
| ACCTTTGGTATTTCTGGCTT+GGG | 0.325986 | 3.4:-18677030 | None:intergenic |
| ACCTTAGGTAGTTCATGTTT+TGG | 0.327549 | 3.4:-18676898 | None:intergenic |
| GTATTGGTTGGAACATCTTT+AGG | 0.328990 | 3.4:-18677168 | None:intergenic |
| TTAGGCAACTCGGGAACTTT+AGG | 0.329308 | 3.4:-18676724 | None:intergenic |
| TACCTTAGGGATATCTGGTT+TGG | 0.332667 | 3.4:-18676932 | None:intergenic |
| TAGCTCAGGTTTGGGCAATT+CGG | 0.333543 | 3.4:-18676752 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+AGG | 0.339853 | 3.4:-18676946 | None:intergenic |
| AGCTCGGGCTTTGGAAGTTC+AGG | 0.341805 | 3.4:-18676643 | None:intergenic |
| AAGTCAGACTTTGGCAATTC+GGG | 0.351787 | 3.4:-18676817 | None:intergenic |
| ATAGGTGGAAAATCAAGTTT+TGG | 0.353325 | 3.4:-18676544 | None:intergenic |
| ACCTTAGGTAGCTCGGGTTT+TGG | 0.355137 | 3.4:-18676964 | None:intergenic |
| ACTTTGGGAAACTCGGGTTT+TGG | 0.357337 | 3.4:-18676691 | None:intergenic |
| TTAGGCAACTCAGGAACTTT+GGG | 0.358876 | 3.4:-18676706 | None:intergenic |
| ACTTTAGGTAGCTCAGGTTT+GGG | 0.365399 | 3.4:-18676760 | None:intergenic |
| AATTTCTGGCATAGACAATT+CGG | 0.365865 | 3.4:-18676785 | None:intergenic |
| TTGGGCAACTCAGAGACTTT+TGG | 0.369313 | 3.4:-18677012 | None:intergenic |
| ACATTAACTTTAGGTAGTTC+AGG | 0.370017 | 3.4:-18677102 | None:intergenic |
| TAAGTCAGACTTTGGCAATT+CGG | 0.370863 | 3.4:-18676818 | None:intergenic |
| AGTTCAGGGACATTAACTTT+AGG | 0.387475 | 3.4:-18677111 | None:intergenic |
| CTCAGGAACTTTGGGAAACT+CGG | 0.389158 | 3.4:-18676698 | None:intergenic |
| AGAAGCTCAGGCTTTGGTAT+AGG | 0.389563 | 3.4:-18676562 | None:intergenic |
| ACTTTAGGTAATTCTGGCTT+TGG | 0.389572 | 3.4:-18676619 | None:intergenic |
| ATCTTAAGAAGCTCAGGCTT+TGG | 0.392921 | 3.4:-18676568 | None:intergenic |
| TTTAGGCAACTCAGGAACTT+TGG | 0.393082 | 3.4:-18676707 | None:intergenic |
| ATTTCTGGCATAGACAATTC+GGG | 0.397522 | 3.4:-18676784 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+TGG | 0.399783 | 3.4:-18677045 | None:intergenic |
| AACTTAGGTAGCTCGGGCTT+TGG | 0.403695 | 3.4:-18676652 | None:intergenic |
| TTCAGGGACTTTAGGTGGCT+CGG | 0.421818 | 3.4:-18676872 | None:intergenic |
| ACCTTAGGGATATCTGGTTT+GGG | 0.423518 | 3.4:-18676931 | None:intergenic |
| ATCTTAGGTAACTCTAGCTT+TGG | 0.432161 | 3.4:-18677063 | None:intergenic |
| AGTTCCAACTTAAGGAGTAT+TGG | 0.438613 | 3.4:-18677184 | None:intergenic |
| AGAGTATTACAATGGTTGTC+GGG | 0.440611 | 3.4:+18676485 | MS.gene93574:CDS |
| TTTGGCAATTCAGGTACCTT+AGG | 0.442441 | 3.4:-18676601 | None:intergenic |
| TTTGGTAATTCAGGTACCTT+AGG | 0.444525 | 3.4:-18676979 | None:intergenic |
| TTCAGGTACCTTAGGTAGCT+CGG | 0.444849 | 3.4:-18676971 | None:intergenic |
| TCAGGAATCTTAAGAAGCTC+AGG | 0.452292 | 3.4:-18676574 | None:intergenic |
| AATTTAGGTAAGTCAGACTT+TGG | 0.455064 | 3.4:-18676826 | None:intergenic |
| TTGGGCAATTCGGGGAACTT+AGG | 0.457555 | 3.4:-18676742 | None:intergenic |
| AACATTAAACTTAGGTAGCT+CGG | 0.462347 | 3.4:-18676659 | None:intergenic |
| TCGGGGACTTTAGGTAGCTC+AGG | 0.467048 | 3.4:-18676766 | None:intergenic |
| TTCAGGGAATTTAGGTAACT+CGG | 0.478958 | 3.4:-18677142 | None:intergenic |
| GGCAATTCAGGGACTTTAGG+TGG | 0.484066 | 3.4:-18676877 | None:intergenic |
| TTGGGCAACTCAGAGACCTT+AGG | 0.486272 | 3.4:-18676913 | None:intergenic |
| GACAACCATTGTAATACTCT+TGG | 0.489157 | 3.4:-18676482 | None:intergenic |
| AATTCAGGAACATTAAACTT+AGG | 0.490699 | 3.4:-18676667 | None:intergenic |
| ACATTAAACTTAGGTAGCTC+GGG | 0.491103 | 3.4:-18676658 | None:intergenic |
| TTGGTAATTCAGGTACCTTA+GGG | 0.494321 | 3.4:-18676945 | None:intergenic |
| GAACATCTTTAGGAGTTTCA+GGG | 0.495266 | 3.4:-18677158 | None:intergenic |
| TCAGGTACCTTAGGTAGCTC+GGG | 0.499460 | 3.4:-18676970 | None:intergenic |
| TAAGATTCCTGAATTGCCTA+AGG | 0.500552 | 3.4:+18676585 | MS.gene93574:CDS |
| TCAGGGACTTTAGGTGGCTC+GGG | 0.502047 | 3.4:-18676871 | None:intergenic |
| AACCATTGTAATACTCTTGG+CGG | 0.510875 | 3.4:-18676479 | None:intergenic |
| TTCGGGGAACTTAGGCAACT+CGG | 0.511694 | 3.4:-18676734 | None:intergenic |
| CCAACTTAAGGAGTATTGGT+TGG | 0.525013 | 3.4:-18677180 | None:intergenic |
| AAGAGTATTACAATGGTTGT+CGG | 0.526376 | 3.4:+18676484 | MS.gene93574:CDS |
| GCCAAAACATGAACTACCTA+AGG | 0.527245 | 3.4:+18676897 | MS.gene93574:CDS |
| TCAGGAACTTTGGGAAACTC+GGG | 0.528389 | 3.4:-18676697 | None:intergenic |
| AGCTCAGGCTTTGGTATAGG+TGG | 0.530445 | 3.4:-18676559 | None:intergenic |
| TCAGGGAATTTAGGTAACTC+GGG | 0.549724 | 3.4:-18677141 | None:intergenic |
| TCGGGAACTTTAGGCAACTC+AGG | 0.569614 | 3.4:-18676715 | None:intergenic |
| ACCAAAACCCGAGCTACCTA+AGG | 0.574183 | 3.4:+18676963 | MS.gene93574:CDS |
| TCGGGGAACTTAGGCAACTC+GGG | 0.578462 | 3.4:-18676733 | None:intergenic |
| TTTCTGGCATAGACAATTCG+GGG | 0.611978 | 3.4:-18676783 | None:intergenic |
| GAGTATTACAATGGTTGTCG+GGG | 0.633099 | 3.4:+18676486 | MS.gene93574:CDS |
| GCTCAGGTTTGGGCAATTCG+GGG | 0.647891 | 3.4:-18676750 | None:intergenic |
| GCCCAAACCAGATATCCCTA+AGG | 0.649847 | 3.4:+18676930 | MS.gene93574:CDS |
| ATCCGCCAAGAGTATTACAA+TGG | 0.672419 | 3.4:+18676477 | MS.gene93574:CDS |
| GCCCAAGCCAGAAATACCAA+AGG | 0.675655 | 3.4:+18677029 | MS.gene93574:CDS |
| TCTAGAGTCGAACATACCAG+AGG | 0.728584 | 3.4:+18676519 | MS.gene93574:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATTCAGGAACATTAAACTT+AGG | - | chr3.4:18676670-18676689 | None:intergenic | 25.0% |
| AACATTAAACTTAGGTAGCT+CGG | - | chr3.4:18676662-18676681 | None:intergenic | 30.0% | |
| AATTTAGGTAAGTCAGACTT+TGG | - | chr3.4:18676829-18676848 | None:intergenic | 30.0% | |
| ACATTAACTTTAGGTAGTTC+AGG | - | chr3.4:18677105-18677124 | None:intergenic | 30.0% | |
| TTTGTCAATTCAGGTATCTT+AGG | - | chr3.4:18677081-18677100 | None:intergenic | 30.0% | |
| ! | ATAGGTGGAAAATCAAGTTT+TGG | - | chr3.4:18676547-18676566 | None:intergenic | 30.0% |
| !! | AAGAGTATTACAATGGTTGT+CGG | + | chr3.4:18676484-18676503 | MS.gene93574:CDS | 30.0% |
| !! | AATTCAGGGGCATTAAATTT+AGG | - | chr3.4:18676844-18676863 | None:intergenic | 30.0% |
| !! | AATTTCTGGCATAGACAATT+CGG | - | chr3.4:18676788-18676807 | None:intergenic | 30.0% |
| AACCATTGTAATACTCTTGG+CGG | - | chr3.4:18676482-18676501 | None:intergenic | 35.0% | |
| ACATTAAACTTAGGTAGCTC+GGG | - | chr3.4:18676661-18676680 | None:intergenic | 35.0% | |
| AGTTCAGGGACATTAACTTT+AGG | - | chr3.4:18677114-18677133 | None:intergenic | 35.0% | |
| GACAACCATTGTAATACTCT+TGG | - | chr3.4:18676485-18676504 | None:intergenic | 35.0% | |
| TAAGATTCCTGAATTGCCTA+AGG | + | chr3.4:18676585-18676604 | MS.gene93574:CDS | 35.0% | |
| TAAGTCAGACTTTGGCAATT+CGG | - | chr3.4:18676821-18676840 | None:intergenic | 35.0% | |
| TCAGGTACTTTAGGTAATTC+TGG | - | chr3.4:18676628-18676647 | None:intergenic | 35.0% | |
| TTAGGAGTTTCAGGGAATTT+AGG | - | chr3.4:18677153-18677172 | None:intergenic | 35.0% | |
| TTCAGGGAATTTAGGTAACT+CGG | - | chr3.4:18677145-18677164 | None:intergenic | 35.0% | |
| TTTGGAAGTTCAGGTACTTT+AGG | - | chr3.4:18676637-18676656 | None:intergenic | 35.0% | |
| ! | AATTTAGGTAACTCGGGTTT+TGG | - | chr3.4:18677138-18677157 | None:intergenic | 35.0% |
| ! | ACCTTAGGTAGTTCATGTTT+TGG | - | chr3.4:18676901-18676920 | None:intergenic | 35.0% |
| ! | AGAGTATTACAATGGTTGTC+GGG | + | chr3.4:18676485-18676504 | MS.gene93574:CDS | 35.0% |
| ! | ATCTTAGGTAACTCTAGCTT+TGG | - | chr3.4:18677066-18677085 | None:intergenic | 35.0% |
| ! | GAACATCTTTAGGAGTTTCA+GGG | - | chr3.4:18677161-18677180 | None:intergenic | 35.0% |
| ! | TTGGTAATTCAGGTACCTTA+GGG | - | chr3.4:18676948-18676967 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+AGG | - | chr3.4:18676949-18676968 | None:intergenic | 35.0% |
| ! | TTTGGTAATTCAGGTACCTT+TGG | - | chr3.4:18676949-18676968 | None:intergenic | 35.0% |
| !! | AACTCTAGCTTTGGTAATTC+AGG | - | chr3.4:18677057-18677076 | None:intergenic | 35.0% |
| !! | ACTTTAGGTAATTCTGGCTT+TGG | - | chr3.4:18676622-18676641 | None:intergenic | 35.0% |
| !! | ATTTCTGGCATAGACAATTC+GGG | - | chr3.4:18676787-18676806 | None:intergenic | 35.0% |
| !! | GTATTGGTTGGAACATCTTT+AGG | - | chr3.4:18677171-18677190 | None:intergenic | 35.0% |
| !!! | AAATCAAGTTTTGGAACCTC+TGG | - | chr3.4:18676538-18676557 | None:intergenic | 35.0% |
| !!! | AGTTCATGTTTTGGCAATTC+AGG | - | chr3.4:18676892-18676911 | None:intergenic | 35.0% |
| !!! | GTTCATGTTTTGGCAATTCA+GGG | - | chr3.4:18676891-18676910 | None:intergenic | 35.0% |
| AAGTCAGACTTTGGCAATTC+GGG | - | chr3.4:18676820-18676839 | None:intergenic | 40.0% | |
| ACTTTAGGTAGCTCAGGTTT+GGG | - | chr3.4:18676763-18676782 | None:intergenic | 40.0% | |
| ATAGACAATTCGGGGACTTT+AGG | - | chr3.4:18676778-18676797 | None:intergenic | 40.0% | |
| ATCTTAAGAAGCTCAGGCTT+TGG | - | chr3.4:18676571-18676590 | None:intergenic | 40.0% | |
| GAGTATTACAATGGTTGTCG+GGG | + | chr3.4:18676486-18676505 | MS.gene93574:CDS | 40.0% | |
| GCCAAAACATGAACTACCTA+AGG | + | chr3.4:18676897-18676916 | MS.gene93574:CDS | 40.0% | |
| TACCTTAGGGATATCTGGTT+TGG | - | chr3.4:18676935-18676954 | None:intergenic | 40.0% | |
| TCAGGAATCTTAAGAAGCTC+AGG | - | chr3.4:18676577-18676596 | None:intergenic | 40.0% | |
| TCAGGGAATTTAGGTAACTC+GGG | - | chr3.4:18677144-18677163 | None:intergenic | 40.0% | |
| TCAGGTACCTTTGGTATTTC+TGG | - | chr3.4:18677039-18677058 | None:intergenic | 40.0% | |
| TTAGGCAACTCAGGAACTTT+GGG | - | chr3.4:18676709-18676728 | None:intergenic | 40.0% | |
| TTTAGGCAACTCAGGAACTT+TGG | - | chr3.4:18676710-18676729 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGGACTTT+AGG | - | chr3.4:18676883-18676902 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGTACCTT+AGG | - | chr3.4:18676604-18676623 | None:intergenic | 40.0% | |
| TTTGGCAATTCGGGTATCTT+TGG | - | chr3.4:18676811-18676830 | None:intergenic | 40.0% | |
| ! | ACCTTAGGGATATCTGGTTT+GGG | - | chr3.4:18676934-18676953 | None:intergenic | 40.0% |
| ! | AGTTCAGGCTTTGTCAATTC+AGG | - | chr3.4:18677090-18677109 | None:intergenic | 40.0% |
| ! | GGAACATCTTTAGGAGTTTC+AGG | - | chr3.4:18677162-18677181 | None:intergenic | 40.0% |
| ! | TTTCTGGCATAGACAATTCG+GGG | - | chr3.4:18676786-18676805 | None:intergenic | 40.0% |
| !! | AATTCTGGCTTTGGCAATTC+AGG | - | chr3.4:18676613-18676632 | None:intergenic | 40.0% |
| !! | ACCTTTGGTATTTCTGGCTT+GGG | - | chr3.4:18677033-18677052 | None:intergenic | 40.0% |
| !! | ATCCGCCAAGAGTATTACAA+TGG | + | chr3.4:18676477-18676496 | MS.gene93574:CDS | 40.0% |
| !! | TACCTTTGGTATTTCTGGCT+TGG | - | chr3.4:18677034-18677053 | None:intergenic | 40.0% |
| !! | TCGGGTATCTTTGGAATTTC+TGG | - | chr3.4:18676802-18676821 | None:intergenic | 40.0% |
| GACTTTAGGTAGCTCAGGTT+TGG | - | chr3.4:18676764-18676783 | None:intergenic | 45.0% | |
| TAGCTCAGGTTTGGGCAATT+CGG | - | chr3.4:18676755-18676774 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGCAATTC+AGG | - | chr3.4:18676595-18676614 | None:intergenic | 45.0% | |
| TCAGGTACCTTAGGGATATC+TGG | - | chr3.4:18676940-18676959 | None:intergenic | 45.0% | |
| TTAGGCAACTCGGGAACTTT+AGG | - | chr3.4:18676727-18676746 | None:intergenic | 45.0% | |
| TTCAGGTACCTTAGGTAGCT+CGG | - | chr3.4:18676974-18676993 | None:intergenic | 45.0% | |
| ! | AGAAGCTCAGGCTTTGGTAT+AGG | - | chr3.4:18676565-18676584 | None:intergenic | 45.0% |
| ! | CTCAGGAACTTTGGGAAACT+CGG | - | chr3.4:18676701-18676720 | None:intergenic | 45.0% |
| ! | TCAGGAACTTTGGGAAACTC+GGG | - | chr3.4:18676700-18676719 | None:intergenic | 45.0% |
| ! | TCTAGAGTCGAACATACCAG+AGG | + | chr3.4:18676519-18676538 | MS.gene93574:CDS | 45.0% |
| ! | TTGGGCAACTCAGAGACTTT+TGG | - | chr3.4:18677015-18677034 | None:intergenic | 45.0% |
| !! | AACTCGGGTTTTGGCAATTC+AGG | - | chr3.4:18676685-18676704 | None:intergenic | 45.0% |
| !! | ACTTTGGGAAACTCGGGTTT+TGG | - | chr3.4:18676694-18676713 | None:intergenic | 45.0% |
| !! | ACTTTTGGTAGCTCGGGTTT+TGG | - | chr3.4:18677000-18677019 | None:intergenic | 45.0% |
| !! | AGCTCGGGTTTTGGTAATTC+AGG | - | chr3.4:18676958-18676977 | None:intergenic | 45.0% |
| !! | CTCAGAGACTTTTGGTAGCT+CGG | - | chr3.4:18677007-18677026 | None:intergenic | 45.0% |
| !! | CTCGGGTTTTGGTAATTCAG+GGG | - | chr3.4:18676857-18676876 | None:intergenic | 45.0% |
| !! | GCTCGGGTTTTGGTAATTCA+GGG | - | chr3.4:18676858-18676877 | None:intergenic | 45.0% |
| !! | TCAGAGACTTTTGGTAGCTC+GGG | - | chr3.4:18677006-18677025 | None:intergenic | 45.0% |
| AACTTAGGTAGCTCGGGCTT+TGG | - | chr3.4:18676655-18676674 | None:intergenic | 50.0% | |
| ACCAAAACCCGAGCTACCTA+AGG | + | chr3.4:18676963-18676982 | MS.gene93574:CDS | 50.0% | |
| AGCTCAGGTTTGGGCAATTC+GGG | - | chr3.4:18676754-18676773 | None:intergenic | 50.0% | |
| GCCCAAACCAGATATCCCTA+AGG | + | chr3.4:18676930-18676949 | MS.gene93574:CDS | 50.0% | |
| GCCCAAGCCAGAAATACCAA+AGG | + | chr3.4:18677029-18677048 | MS.gene93574:CDS | 50.0% | |
| GGCAATTCAGGGACTTTAGG+TGG | - | chr3.4:18676880-18676899 | None:intergenic | 50.0% | |
| TCAGGTACCTTAGGTAGCTC+GGG | - | chr3.4:18676973-18676992 | None:intergenic | 50.0% | |
| TCGGGAACTTTAGGCAACTC+AGG | - | chr3.4:18676718-18676737 | None:intergenic | 50.0% | |
| TTCAGGGACTTTAGGTGGCT+CGG | - | chr3.4:18676875-18676894 | None:intergenic | 50.0% | |
| TTCGGGGAACTTAGGCAACT+CGG | - | chr3.4:18676737-18676756 | None:intergenic | 50.0% | |
| TTGGGCAACTCAGAGACCTT+AGG | - | chr3.4:18676916-18676935 | None:intergenic | 50.0% | |
| TTGGGCAATTCGGGGAACTT+AGG | - | chr3.4:18676745-18676764 | None:intergenic | 50.0% | |
| ! | ACCTTAGGTAGCTCGGGTTT+TGG | - | chr3.4:18676967-18676986 | None:intergenic | 50.0% |
| ! | AGCTCAGGCTTTGGTATAGG+TGG | - | chr3.4:18676562-18676581 | None:intergenic | 50.0% |
| !! | AACTCGGGTTTTGGCAGTTC+AGG | - | chr3.4:18677129-18677148 | None:intergenic | 50.0% |
| !! | ACTCGGGTTTTGGCAGTTCA+GGG | - | chr3.4:18677128-18677147 | None:intergenic | 50.0% |
| !! | ACTTTAGGTGGCTCGGGTTT+TGG | - | chr3.4:18676868-18676887 | None:intergenic | 50.0% |
| !! | GGCTCGGGTTTTGGTAATTC+AGG | - | chr3.4:18676859-18676878 | None:intergenic | 50.0% |
| GCTCAGGTTTGGGCAATTCG+GGG | - | chr3.4:18676753-18676772 | None:intergenic | 55.0% | |
| TCAGGGACTTTAGGTGGCTC+GGG | - | chr3.4:18676874-18676893 | None:intergenic | 55.0% | |
| TCGGGGAACTTAGGCAACTC+GGG | - | chr3.4:18676736-18676755 | None:intergenic | 55.0% | |
| TCGGGGACTTTAGGTAGCTC+AGG | - | chr3.4:18676769-18676788 | None:intergenic | 55.0% | |
| !! | AGCTCGGGCTTTGGAAGTTC+AGG | - | chr3.4:18676646-18676665 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 18676460 | 18677197 | 18676460 | ID=MS.gene93574 |
| chr3.4 | mRNA | 18676460 | 18677197 | 18676460 | ID=MS.gene93574.t1;Parent=MS.gene93574 |
| chr3.4 | exon | 18676460 | 18677197 | 18676460 | ID=MS.gene93574.t1.exon1;Parent=MS.gene93574.t1 |
| chr3.4 | CDS | 18676460 | 18677197 | 18676460 | ID=cds.MS.gene93574.t1;Parent=MS.gene93574.t1 |
| Gene Sequence |
| Protein sequence |
