Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93583.t1 | XP_003599015.2 | 93 | 568 | 21 | 3 | 1 | 559 | 1 | 558 | 7.20E-302 | 1045.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93583.t1 | O64884 | 65.5 | 583 | 157 | 8 | 1 | 559 | 1 | 563 | 2.9e-211 | 736.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93583.t1 | G7IZD0 | 93.0 | 568 | 21 | 3 | 1 | 559 | 1 | 558 | 5.2e-302 | 1045.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene034151 | MS.gene93583 | PPI |
MS.gene34286 | MS.gene93583 | PPI |
MS.gene93583 | MS.gene38303 | PPI |
MS.gene93583 | MS.gene054584 | PPI |
MS.gene93583 | MS.gene053144 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93583.t1 | MTR_3g026650 | 92.958 | 568 | 21 | 3 | 1 | 559 | 1 | 558 | 0.0 | 1015 |
MS.gene93583.t1 | MTR_3g026650 | 93.763 | 497 | 21 | 2 | 1 | 497 | 1 | 487 | 0.0 | 890 |
MS.gene93583.t1 | MTR_4g023030 | 68.160 | 625 | 132 | 10 | 1 | 562 | 1 | 621 | 0.0 | 768 |
MS.gene93583.t1 | MTR_3g026650 | 92.701 | 411 | 20 | 2 | 1 | 411 | 1 | 401 | 0.0 | 714 |
MS.gene93583.t1 | MTR_4g125460 | 35.335 | 433 | 255 | 8 | 143 | 557 | 53 | 478 | 5.89e-81 | 262 |
MS.gene93583.t1 | MTR_4g125460 | 35.335 | 433 | 255 | 8 | 143 | 557 | 192 | 617 | 2.57e-79 | 261 |
MS.gene93583.t1 | MTR_5g064620 | 36.923 | 455 | 227 | 14 | 142 | 557 | 78 | 511 | 6.65e-77 | 253 |
MS.gene93583.t1 | MTR_3g096020 | 34.694 | 441 | 246 | 12 | 147 | 557 | 158 | 586 | 2.68e-72 | 242 |
MS.gene93583.t1 | MTR_4g019210 | 34.346 | 428 | 250 | 10 | 152 | 558 | 205 | 622 | 2.78e-71 | 241 |
MS.gene93583.t1 | MTR_5g099010 | 35.056 | 445 | 258 | 13 | 133 | 559 | 70 | 501 | 6.68e-71 | 238 |
MS.gene93583.t1 | MTR_5g081690 | 33.962 | 424 | 255 | 8 | 152 | 557 | 94 | 510 | 2.83e-70 | 235 |
MS.gene93583.t1 | MTR_3g099480 | 33.983 | 462 | 238 | 12 | 141 | 561 | 106 | 541 | 1.27e-69 | 234 |
MS.gene93583.t1 | MTR_3g115220 | 35.463 | 454 | 253 | 17 | 128 | 559 | 59 | 494 | 3.54e-69 | 233 |
MS.gene93583.t1 | MTR_4g100810 | 36.693 | 387 | 222 | 9 | 186 | 557 | 111 | 489 | 2.98e-68 | 230 |
MS.gene93583.t1 | MTR_6g016015 | 36.096 | 374 | 216 | 7 | 186 | 540 | 118 | 487 | 3.35e-67 | 226 |
MS.gene93583.t1 | MTR_5g032100 | 33.479 | 457 | 240 | 9 | 151 | 557 | 59 | 501 | 2.27e-66 | 224 |
MS.gene93583.t1 | MTR_5g012770 | 35.023 | 434 | 252 | 12 | 136 | 557 | 79 | 494 | 1.44e-65 | 222 |
MS.gene93583.t1 | MTR_4g084570 | 32.819 | 454 | 262 | 11 | 144 | 565 | 117 | 559 | 6.34e-65 | 222 |
MS.gene93583.t1 | MTR_4g110030 | 35.248 | 383 | 222 | 9 | 177 | 539 | 111 | 487 | 3.34e-63 | 216 |
MS.gene93583.t1 | MTR_4g082310 | 34.430 | 395 | 231 | 10 | 186 | 557 | 100 | 489 | 3.68e-63 | 216 |
MS.gene93583.t1 | MTR_3g100310 | 32.104 | 461 | 247 | 9 | 148 | 557 | 70 | 515 | 8.05e-63 | 215 |
MS.gene93583.t1 | MTR_2g059350 | 35.013 | 377 | 221 | 8 | 177 | 534 | 110 | 481 | 3.08e-62 | 214 |
MS.gene93583.t1 | MTR_1g031590 | 31.947 | 457 | 271 | 11 | 133 | 560 | 104 | 549 | 1.22e-61 | 213 |
MS.gene93583.t1 | MTR_5g042200 | 34.257 | 397 | 233 | 9 | 186 | 559 | 88 | 479 | 9.64e-61 | 209 |
MS.gene93583.t1 | MTR_5g059260 | 31.486 | 451 | 270 | 9 | 144 | 561 | 119 | 563 | 8.66e-60 | 209 |
MS.gene93583.t1 | MTR_3g086570 | 31.674 | 442 | 262 | 12 | 148 | 557 | 114 | 547 | 2.78e-59 | 206 |
MS.gene93583.t1 | MTR_3g005340 | 31.628 | 430 | 260 | 10 | 154 | 557 | 123 | 544 | 7.38e-57 | 200 |
MS.gene93583.t1 | MTR_1g102030 | 26.531 | 441 | 284 | 11 | 152 | 564 | 61 | 489 | 4.56e-48 | 175 |
MS.gene93583.t1 | MTR_4g132590 | 30.162 | 431 | 236 | 12 | 186 | 557 | 68 | 492 | 4.00e-44 | 164 |
MS.gene93583.t1 | MTR_4g132590 | 30.162 | 431 | 236 | 12 | 186 | 557 | 167 | 591 | 1.50e-43 | 164 |
MS.gene93583.t1 | MTR_2g016470 | 28.112 | 466 | 273 | 14 | 148 | 557 | 155 | 614 | 8.54e-43 | 162 |
MS.gene93583.t1 | MTR_3g086570 | 30.960 | 323 | 195 | 9 | 148 | 448 | 114 | 430 | 1.97e-41 | 155 |
MS.gene93583.t1 | MTR_1g101990 | 26.370 | 292 | 194 | 7 | 287 | 564 | 1 | 285 | 2.80e-32 | 127 |
MS.gene93583.t1 | MTR_4g023050 | 61.458 | 96 | 34 | 2 | 468 | 562 | 13 | 106 | 3.99e-31 | 117 |
MS.gene93583.t1 | MTR_7g017330 | 30.000 | 290 | 188 | 6 | 186 | 460 | 101 | 390 | 6.81e-31 | 128 |
MS.gene93583.t1 | MTR_3g092590 | 29.592 | 294 | 192 | 6 | 186 | 464 | 93 | 386 | 7.29e-29 | 121 |
MS.gene93583.t1 | MTR_3g092590 | 29.592 | 294 | 192 | 6 | 186 | 464 | 93 | 386 | 8.96e-29 | 121 |
MS.gene93583.t1 | MTR_4g010990 | 27.707 | 314 | 213 | 8 | 186 | 496 | 78 | 380 | 2.23e-28 | 118 |
MS.gene93583.t1 | MTR_1g088900 | 64.368 | 87 | 1 | 1 | 271 | 357 | 38 | 94 | 3.05e-26 | 108 |
MS.gene93583.t1 | MTR_4g010990 | 26.910 | 301 | 206 | 8 | 199 | 496 | 2 | 291 | 7.15e-25 | 106 |
MS.gene93583.t1 | MTR_1g007390 | 30.112 | 269 | 173 | 6 | 211 | 464 | 124 | 392 | 1.50e-24 | 108 |
MS.gene93583.t1 | MTR_7g064210 | 33.140 | 172 | 107 | 2 | 289 | 453 | 19 | 189 | 2.35e-19 | 90.9 |
MS.gene93583.t1 | MTR_4g008200 | 25.077 | 323 | 181 | 12 | 186 | 490 | 38 | 317 | 4.25e-18 | 86.7 |
MS.gene93583.t1 | MTR_4g008200 | 25.387 | 323 | 180 | 13 | 186 | 490 | 89 | 368 | 6.03e-18 | 86.7 |
MS.gene93583.t1 | MTR_1g101985 | 37.736 | 106 | 62 | 1 | 152 | 257 | 61 | 162 | 2.93e-17 | 80.5 |
MS.gene93583.t1 | MTR_2g038320 | 24.311 | 399 | 229 | 17 | 113 | 490 | 26 | 372 | 2.32e-15 | 79.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93583.t1 | AT2G44500 | 65.961 | 567 | 155 | 7 | 11 | 559 | 17 | 563 | 0.0 | 734 |
MS.gene93583.t1 | AT3G07900 | 60.595 | 571 | 192 | 10 | 10 | 558 | 14 | 573 | 0.0 | 659 |
MS.gene93583.t1 | AT5G63390 | 60.187 | 427 | 158 | 3 | 143 | 557 | 122 | 548 | 0.0 | 541 |
MS.gene93583.t1 | AT2G44500 | 62.927 | 410 | 123 | 6 | 11 | 411 | 17 | 406 | 6.71e-170 | 488 |
MS.gene93583.t1 | AT5G35570 | 34.642 | 433 | 246 | 11 | 151 | 559 | 223 | 642 | 2.69e-72 | 244 |
MS.gene93583.t1 | AT1G20550 | 34.895 | 427 | 256 | 11 | 146 | 559 | 74 | 491 | 2.71e-70 | 236 |
MS.gene93583.t1 | AT1G22460 | 33.484 | 442 | 262 | 6 | 144 | 560 | 126 | 560 | 5.64e-70 | 235 |
MS.gene93583.t1 | AT5G64600 | 34.773 | 440 | 241 | 11 | 151 | 558 | 90 | 515 | 7.39e-70 | 234 |
MS.gene93583.t1 | AT1G76270 | 34.180 | 433 | 253 | 10 | 145 | 559 | 70 | 488 | 1.24e-68 | 232 |
MS.gene93583.t1 | AT5G01100 | 33.178 | 428 | 257 | 9 | 152 | 558 | 190 | 609 | 1.55e-68 | 233 |
MS.gene93583.t1 | AT3G54100 | 33.179 | 431 | 251 | 10 | 152 | 558 | 195 | 612 | 3.19e-68 | 233 |
MS.gene93583.t1 | AT4G24530 | 33.478 | 460 | 240 | 11 | 149 | 557 | 72 | 516 | 6.56e-68 | 229 |
MS.gene93583.t1 | AT2G37980 | 32.160 | 426 | 262 | 9 | 152 | 558 | 199 | 616 | 2.31e-65 | 225 |
MS.gene93583.t1 | AT5G65470 | 32.976 | 467 | 245 | 11 | 144 | 558 | 53 | 503 | 3.01e-65 | 221 |
MS.gene93583.t1 | AT4G38390 | 34.140 | 413 | 240 | 9 | 145 | 537 | 87 | 487 | 2.04e-64 | 220 |
MS.gene93583.t1 | AT5G15740 | 34.501 | 371 | 224 | 6 | 186 | 539 | 109 | 477 | 2.42e-63 | 216 |
MS.gene93583.t1 | AT2G03280 | 35.561 | 374 | 214 | 8 | 187 | 539 | 92 | 459 | 7.24e-63 | 214 |
MS.gene93583.t1 | AT1G14970 | 31.982 | 444 | 265 | 9 | 149 | 565 | 7 | 440 | 2.96e-62 | 211 |
MS.gene93583.t1 | AT3G02250 | 33.962 | 371 | 226 | 6 | 186 | 539 | 109 | 477 | 1.56e-60 | 209 |
MS.gene93583.t1 | AT1G14970 | 31.900 | 442 | 264 | 9 | 151 | 565 | 129 | 560 | 2.08e-60 | 210 |
MS.gene93583.t1 | AT3G26370 | 33.417 | 398 | 236 | 9 | 186 | 557 | 161 | 555 | 2.70e-60 | 209 |
MS.gene93583.t1 | AT1G14020 | 33.671 | 395 | 232 | 9 | 187 | 557 | 95 | 483 | 1.53e-59 | 206 |
MS.gene93583.t1 | AT1G14970 | 32.212 | 416 | 253 | 7 | 176 | 565 | 2 | 414 | 2.77e-59 | 203 |
MS.gene93583.t1 | AT4G16650 | 37.887 | 388 | 216 | 11 | 186 | 557 | 125 | 503 | 6.36e-59 | 205 |
MS.gene93583.t1 | AT4G16650 | 37.887 | 388 | 216 | 11 | 186 | 557 | 125 | 503 | 6.36e-59 | 205 |
MS.gene93583.t1 | AT2G03280 | 33.167 | 401 | 214 | 9 | 187 | 539 | 92 | 486 | 3.09e-57 | 200 |
MS.gene93583.t1 | AT1G38065 | 32.574 | 439 | 239 | 13 | 163 | 557 | 3 | 428 | 9.08e-57 | 197 |
MS.gene93583.t1 | AT1G38065 | 32.767 | 412 | 225 | 11 | 186 | 557 | 39 | 438 | 1.16e-56 | 197 |
MS.gene93583.t1 | AT1G35510 | 30.296 | 439 | 271 | 8 | 152 | 564 | 134 | 563 | 2.55e-56 | 199 |
MS.gene93583.t1 | AT2G01480 | 32.360 | 411 | 249 | 7 | 172 | 556 | 143 | 550 | 2.94e-56 | 199 |
MS.gene93583.t1 | AT1G38131 | 32.783 | 424 | 232 | 12 | 174 | 557 | 147 | 557 | 8.36e-56 | 198 |
MS.gene93583.t1 | AT1G04910 | 28.505 | 428 | 270 | 11 | 152 | 557 | 61 | 474 | 2.97e-55 | 195 |
MS.gene93583.t1 | AT2G01480 | 32.791 | 369 | 224 | 5 | 172 | 516 | 143 | 511 | 2.83e-51 | 184 |
MS.gene93583.t1 | AT1G62330 | 29.325 | 474 | 255 | 15 | 152 | 560 | 194 | 652 | 5.12e-51 | 186 |
MS.gene93583.t1 | AT1G11990 | 30.822 | 438 | 261 | 12 | 152 | 558 | 163 | 589 | 7.65e-50 | 181 |
MS.gene93583.t1 | AT1G11990 | 27.106 | 546 | 312 | 15 | 87 | 558 | 78 | 611 | 3.95e-45 | 169 |
MS.gene93583.t1 | AT1G29200 | 30.905 | 453 | 247 | 13 | 162 | 557 | 50 | 493 | 2.45e-44 | 164 |
MS.gene93583.t1 | AT1G29200 | 30.905 | 453 | 247 | 13 | 162 | 557 | 50 | 493 | 2.45e-44 | 164 |
MS.gene93583.t1 | AT1G29200 | 30.905 | 453 | 247 | 13 | 162 | 557 | 166 | 609 | 9.28e-44 | 165 |
MS.gene93583.t1 | AT1G29200 | 31.148 | 427 | 229 | 13 | 188 | 557 | 1 | 419 | 9.38e-43 | 158 |
MS.gene93583.t1 | AT3G30300 | 32.646 | 291 | 179 | 7 | 186 | 460 | 103 | 392 | 5.03e-34 | 137 |
MS.gene93583.t1 | AT3G30300 | 32.646 | 291 | 179 | 7 | 186 | 460 | 103 | 392 | 5.03e-34 | 137 |
MS.gene93583.t1 | AT1G52630 | 23.810 | 441 | 283 | 15 | 134 | 557 | 31 | 435 | 1.06e-29 | 122 |
MS.gene93583.t1 | AT3G26370 | 34.615 | 182 | 105 | 4 | 186 | 354 | 161 | 341 | 2.07e-29 | 120 |
MS.gene93583.t1 | AT3G03810 | 30.847 | 295 | 187 | 6 | 186 | 464 | 92 | 385 | 2.09e-29 | 123 |
MS.gene93583.t1 | AT3G03810 | 30.847 | 295 | 187 | 6 | 186 | 464 | 92 | 385 | 2.09e-29 | 123 |
MS.gene93583.t1 | AT1G52630 | 24.468 | 376 | 237 | 13 | 199 | 557 | 2 | 347 | 8.92e-26 | 109 |
MS.gene93583.t1 | AT1G51630 | 24.311 | 399 | 225 | 18 | 117 | 490 | 26 | 372 | 6.23e-14 | 74.3 |
Find 106 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTTATGGTTGTTGTTTC+TGG | 0.112650 | 3.4:+19317491 | MS.gene93583:CDS |
CTGTTTCTTGTTGGTTTCTT+TGG | 0.119079 | 3.4:+19317101 | MS.gene93583:CDS |
TTAGGAAACTCTTGGATTAA+TGG | 0.176133 | 3.4:-19319663 | None:intergenic |
AGTGAAGAATTTAGAAAATA+AGG | 0.209967 | 3.4:-19320058 | None:intergenic |
GTTGTTCTTGAAGGCTTCTT+TGG | 0.213967 | 3.4:-19317041 | None:intergenic |
GCCATCTCATGGAGGAAATA+TGG | 0.218103 | 3.4:+19319800 | MS.gene93583:CDS |
TAACTTCTTTGCATTGTTCT+TGG | 0.233140 | 3.4:-19316946 | None:intergenic |
TGATTTGGTTACAGTGAATT+TGG | 0.253561 | 3.4:+19317957 | MS.gene93583:intron |
GTTGTTATGGCTAGAATTCT+TGG | 0.261856 | 3.4:+19317551 | MS.gene93583:CDS |
TTTGCAAGTCAATGTTATTT+GGG | 0.282289 | 3.4:+19317595 | MS.gene93583:CDS |
AAATATGGGCCGTGCAATTC+AGG | 0.296659 | 3.4:+19319815 | MS.gene93583:CDS |
TGGAAGAAACCAAATGGTTT+AGG | 0.301407 | 3.4:+19317395 | MS.gene93583:CDS |
TTCTTTGGTATGTTCAAGTT+TGG | 0.303269 | 3.4:+19317116 | MS.gene93583:CDS |
TAAGAATGGAAAAGGATGTT+TGG | 0.316903 | 3.4:+19319066 | MS.gene93583:CDS |
AACACTACTAAGACCAAGTT+TGG | 0.317659 | 3.4:-19317222 | None:intergenic |
TTGAAGAGAAGAAGATGAAA+TGG | 0.332178 | 3.4:-19317003 | None:intergenic |
TTTCTTACTCTGTTTCTTGT+TGG | 0.334521 | 3.4:+19317092 | MS.gene93583:CDS |
TAGAATTCTTGGTGCTGCTT+TGG | 0.341339 | 3.4:+19317562 | MS.gene93583:CDS |
CTCAGAGACTATGTAATCTA+TGG | 0.350975 | 3.4:-19319760 | None:intergenic |
AAGAATGGAAAAGGATGTTT+GGG | 0.365024 | 3.4:+19319067 | MS.gene93583:CDS |
TGAGAACTTCTGAAGATTTG+TGG | 0.370747 | 3.4:-19317177 | None:intergenic |
TCAATAGAAAATCAACACTA+TGG | 0.371081 | 3.4:+19317069 | MS.gene93583:CDS |
GGAAGCATGTGTCTCTTGTT+TGG | 0.373927 | 3.4:-19320037 | None:intergenic |
GGTTGTTGATGCTGTTGTTA+TGG | 0.378142 | 3.4:+19317538 | MS.gene93583:CDS |
CATGTGCAATTTCAAGCAAA+AGG | 0.388265 | 3.4:+19317341 | MS.gene93583:CDS |
CCTTGCTCTTCATTTAAGAA+TGG | 0.389315 | 3.4:+19319052 | MS.gene93583:CDS |
GGTTTATATCCTAAACCATT+TGG | 0.395737 | 3.4:-19317404 | None:intergenic |
GAGAATTACAACCATTTGTA+AGG | 0.396343 | 3.4:+19319718 | MS.gene93583:CDS |
TGTAAGGAAGGCTTCTCTAA+TGG | 0.399798 | 3.4:+19319734 | MS.gene93583:CDS |
CTTGGACTCGAGGCTTTCTA+AGG | 0.400796 | 3.4:+19318581 | MS.gene93583:CDS |
GTTAATAACCTCGTCGTACT+CGG | 0.401148 | 3.4:-19319120 | None:intergenic |
TTGAAGATGGTTGTTCTTGA+AGG | 0.403468 | 3.4:-19317050 | None:intergenic |
ATAACATTGACTTGCAAAAC+AGG | 0.403737 | 3.4:-19317590 | None:intergenic |
CTTGTCATTATGTGTGTTGA+TGG | 0.406673 | 3.4:-19318047 | None:intergenic |
GTGAGGACAGGTTGTCTCCC+TGG | 0.417494 | 3.4:+19319089 | MS.gene93583:CDS |
GAACTGCATCAAGACTCATT+AGG | 0.418878 | 3.4:+19320112 | MS.gene93583:CDS |
AACTGCATCAAGACTCATTA+GGG | 0.430097 | 3.4:+19320113 | MS.gene93583:CDS |
TTTGAGGAAATGGGGTGTCA+GGG | 0.436312 | 3.4:-19317145 | None:intergenic |
TCTCTGAAGAAGAGTTCAAC+AGG | 0.437881 | 3.4:+19320080 | MS.gene93583:CDS |
AGAGAAGCCTTCCTTACAAA+TGG | 0.441636 | 3.4:-19319729 | None:intergenic |
GGATAGAAGAAAGTATCTTA+TGG | 0.445638 | 3.4:+19317478 | MS.gene93583:CDS |
TGAATGTTATCGAAGTTATG+AGG | 0.455620 | 3.4:+19319228 | MS.gene93583:CDS |
GCTGAGCCAGTTGAGGAACT+TGG | 0.456348 | 3.4:+19318990 | MS.gene93583:CDS |
TTGTTACCAAGTTCCTCAAC+TGG | 0.457096 | 3.4:-19318996 | None:intergenic |
TCTTCATTTAAGAATGGAAA+AGG | 0.458460 | 3.4:+19319058 | MS.gene93583:CDS |
GCACTCAGGGACAGGATACT+TGG | 0.464829 | 3.4:-19320176 | None:intergenic |
CTTATGGTTGTTGTTTCTGG+TGG | 0.465215 | 3.4:+19317494 | MS.gene93583:CDS |
TGGGCTGGAGGGAAACCATT+GGG | 0.467264 | 3.4:+19319621 | MS.gene93583:CDS |
AAGGATGTTTGGGTGAGGAC+AGG | 0.469149 | 3.4:+19319077 | MS.gene93583:CDS |
AAGGAAGATCTTGCCTTGCC+AGG | 0.480516 | 3.4:+19319696 | MS.gene93583:CDS |
TTCTGAAGATTTGTGGAGCA+TGG | 0.482167 | 3.4:-19317170 | None:intergenic |
ATTACAACCATTTGTAAGGA+AGG | 0.482613 | 3.4:+19319722 | MS.gene93583:CDS |
CAAAGACCAGAGCTCTTGAC+TGG | 0.483694 | 3.4:+19319155 | MS.gene93583:CDS |
ACAAATGGTTGTAATTCTCC+TGG | 0.488364 | 3.4:-19319714 | None:intergenic |
GATCTCCCAGTCAAGAGCTC+TGG | 0.488930 | 3.4:-19319161 | None:intergenic |
TTATGGTTGTTGTTTCTGGT+GGG | 0.490217 | 3.4:+19317495 | MS.gene93583:CDS |
CCATCTCATGGAGGAAATAT+GGG | 0.491947 | 3.4:+19319801 | MS.gene93583:CDS |
AGTGGAGGCCTTCCTTCTAC+TGG | 0.497198 | 3.4:-19318071 | None:intergenic |
TTAATAACCTCGTCGTACTC+GGG | 0.499550 | 3.4:-19319119 | None:intergenic |
GATGAATCAACAGAGGAATC+AGG | 0.499809 | 3.4:+19317517 | MS.gene93583:CDS |
CACTTCATGCCACTCCGAGT+TGG | 0.500852 | 3.4:+19318090 | MS.gene93583:CDS |
ATTATATGAGAGAAAGTGAA+AGG | 0.513739 | 3.4:+19317447 | MS.gene93583:CDS |
CAAGAACAAGAACAAGAAAG+AGG | 0.515519 | 3.4:+19317302 | MS.gene93583:CDS |
ATAATGACAAGGCCAGTAGA+AGG | 0.516354 | 3.4:+19318059 | MS.gene93583:CDS |
ATGTTATTTGGGGTGATGAA+AGG | 0.517325 | 3.4:+19317606 | MS.gene93583:CDS |
TTGGGCTGGAGGGAAACCAT+TGG | 0.519413 | 3.4:+19319620 | MS.gene93583:CDS |
ATGGAGTTTATGATTTGTGA+TGG | 0.526571 | 3.4:-19316984 | None:intergenic |
TTTAGGTTACTGAAAGCTCT+AGG | 0.530891 | 3.4:+19319573 | MS.gene93583:intron |
TTGCACATGCACTCAGGGAC+AGG | 0.536508 | 3.4:-19320184 | None:intergenic |
TTTCAAGCAAAAGGGTCTAG+TGG | 0.540471 | 3.4:+19317350 | MS.gene93583:CDS |
ATGTGCAATTTCAAGCAAAA+GGG | 0.544157 | 3.4:+19317342 | MS.gene93583:CDS |
TCTTCAGAAGCTTCGTTGCA+AGG | 0.550451 | 3.4:+19318617 | MS.gene93583:CDS |
AGAGTTCAACAGGATTATCA+AGG | 0.552469 | 3.4:+19320090 | MS.gene93583:CDS |
CGAAGCTTCTGAAGATCAGA+AGG | 0.555068 | 3.4:-19318609 | None:intergenic |
CTCTTCTGAGATATCTTGCA+CGG | 0.560668 | 3.4:-19318115 | None:intergenic |
ATAACTTCGATAACATTCAA+AGG | 0.562246 | 3.4:-19319224 | None:intergenic |
TGGAAAAGGATGTTTGGGTG+AGG | 0.564526 | 3.4:+19319072 | MS.gene93583:CDS |
CCCATATTTCCTCCATGAGA+TGG | 0.564743 | 3.4:-19319801 | None:intergenic |
TCATCATTGCACATGCACTC+AGG | 0.566648 | 3.4:-19320190 | None:intergenic |
CTTAAATGAAGAGCAAGGTA+AGG | 0.569568 | 3.4:-19319047 | None:intergenic |
AAGATTTGCTGAGCCAGTTG+AGG | 0.575476 | 3.4:+19318983 | MS.gene93583:CDS |
CTCGGAGTGGCATGAAGTGG+AGG | 0.577955 | 3.4:-19318086 | None:intergenic |
CATCATTGCACATGCACTCA+GGG | 0.585058 | 3.4:-19320189 | None:intergenic |
GCAGAAAGAATGAAAAGCAA+AGG | 0.585126 | 3.4:+19319023 | MS.gene93583:CDS |
CAACTCGGAGTGGCATGAAG+TGG | 0.586354 | 3.4:-19318089 | None:intergenic |
CCATTCTTAAATGAAGAGCA+AGG | 0.589706 | 3.4:-19319052 | None:intergenic |
CCACTCTCACATCATTTGCA+AGG | 0.590073 | 3.4:-19318013 | None:intergenic |
CATTAGGGCAGCCAGAGCTA+AGG | 0.591137 | 3.4:+19320128 | MS.gene93583:CDS |
TGGTTGTAATTCTCCTGGCA+AGG | 0.596530 | 3.4:-19319709 | None:intergenic |
TCGTACTCGGGACTTAGACC+AGG | 0.600910 | 3.4:-19319107 | None:intergenic |
TTATATGAGAGAAAGTGAAA+GGG | 0.602787 | 3.4:+19317448 | MS.gene93583:CDS |
TATCTTGCACGGATCCAACT+CGG | 0.616793 | 3.4:-19318104 | None:intergenic |
TGACAAGGCCAGTAGAAGGA+AGG | 0.621089 | 3.4:+19318063 | MS.gene93583:CDS |
AAAGACCAGAGCTCTTGACT+GGG | 0.628650 | 3.4:+19319156 | MS.gene93583:CDS |
TGTTAGTGTGTAAATCAGGA+TGG | 0.637167 | 3.4:-19320223 | None:intergenic |
CCTTGCAAATGATGTGAGAG+TGG | 0.638538 | 3.4:+19318013 | MS.gene93583:CDS |
ACTATGCAGCTCAATAGAGA+AGG | 0.642569 | 3.4:+19318540 | MS.gene93583:intron |
ACAATCATACCTGAATTGCA+CGG | 0.655256 | 3.4:-19319824 | None:intergenic |
TTGCAAGTCAATGTTATTTG+GGG | 0.663997 | 3.4:+19317596 | MS.gene93583:CDS |
TCATTACTAAAACTCAAACA+AGG | 0.670567 | 3.4:-19317425 | None:intergenic |
CGTACTCGGGACTTAGACCA+GGG | 0.673876 | 3.4:-19319106 | None:intergenic |
TGCACGGATCCAACTCGGAG+TGG | 0.677266 | 3.4:-19318099 | None:intergenic |
CATCAACACACATAATGACA+AGG | 0.683592 | 3.4:+19318048 | MS.gene93583:CDS |
TCTAAGTCCCGAGTACGACG+AGG | 0.684061 | 3.4:+19319112 | MS.gene93583:CDS |
CTGGTGGGATGAATCAACAG+AGG | 0.721624 | 3.4:+19317510 | MS.gene93583:CDS |
GCTGGAGGGAAACCATTGGG+TGG | 0.722830 | 3.4:+19319624 | MS.gene93583:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAGATGCAAAAATTTATT+GGG | + | chr3.4:19319602-19319621 | MS.gene93583:CDS | 15.0% |
!! | ATCATATATAATGAGTAAAA+GGG | - | chr3.4:19318506-19318525 | None:intergenic | 15.0% |
!! | TATCATATATAATGAGTAAA+AGG | - | chr3.4:19318507-19318526 | None:intergenic | 15.0% |
!! | TGATTACATTCAATTTATTA+CGG | + | chr3.4:19317774-19317793 | MS.gene93583:intron | 15.0% |
!!! | TGTTTTTCTCAAATTATTAT+AGG | + | chr3.4:19319416-19319435 | MS.gene93583:intron | 15.0% |
!!! | TTTATGTTTTTTCATTGATT+TGG | + | chr3.4:19317942-19317961 | MS.gene93583:intron | 15.0% |
!! | AGTGAAGAATTTAGAAAATA+AGG | - | chr3.4:19320061-19320080 | None:intergenic | 20.0% |
!! | CAAAAGATGCAAAAATTTAT+TGG | + | chr3.4:19319601-19319620 | MS.gene93583:CDS | 20.0% |
!! | TCTTCCTTATTGTAAAAATT+AGG | - | chr3.4:19319684-19319703 | None:intergenic | 20.0% |
!!! | ATGTTTTTGGTTTCATATTT+AGG | + | chr3.4:19319556-19319575 | MS.gene93583:intron | 20.0% |
!!! | CAATAAATTTTTGCATCTTT+TGG | - | chr3.4:19319603-19319622 | None:intergenic | 20.0% |
!!! | GTTTCCTAATTTTTACAATA+AGG | + | chr3.4:19319677-19319696 | MS.gene93583:CDS | 20.0% |
! | ATAACTTCGATAACATTCAA+AGG | - | chr3.4:19319227-19319246 | None:intergenic | 25.0% |
! | ATAAGTGACCTATTGTAAAA+GGG | - | chr3.4:19319316-19319335 | None:intergenic | 25.0% |
! | ATTATATGAGAGAAAGTGAA+AGG | + | chr3.4:19317447-19317466 | MS.gene93583:CDS | 25.0% |
! | CTAACTCAATTTCTCAAAAT+CGG | + | chr3.4:19318760-19318779 | MS.gene93583:intron | 25.0% |
! | TACTGTCACAATCAATTATT+CGG | - | chr3.4:19318307-19318326 | None:intergenic | 25.0% |
! | TCAATAGAAAATCAACACTA+TGG | + | chr3.4:19317069-19317088 | MS.gene93583:CDS | 25.0% |
! | TCATTACTAAAACTCAAACA+AGG | - | chr3.4:19317428-19317447 | None:intergenic | 25.0% |
! | TCTTCATTTAAGAATGGAAA+AGG | + | chr3.4:19319058-19319077 | MS.gene93583:CDS | 25.0% |
! | TGTAAAAATTAGGAAACTCT+TGG | - | chr3.4:19319674-19319693 | None:intergenic | 25.0% |
! | TTATATGAGAGAAAGTGAAA+GGG | + | chr3.4:19317448-19317467 | MS.gene93583:CDS | 25.0% |
!! | AAGTTGTTGTCTAAATTTTC+AGG | + | chr3.4:19318944-19318963 | MS.gene93583:intron | 25.0% |
!! | AAGTTTCTTCTTTTCTTGTA+TGG | + | chr3.4:19318647-19318666 | MS.gene93583:intron | 25.0% |
!! | GATTTCATGATAGATGTTTT+TGG | + | chr3.4:19319543-19319562 | MS.gene93583:intron | 25.0% |
!! | TTTGCAAGTCAATGTTATTT+GGG | + | chr3.4:19317595-19317614 | MS.gene93583:CDS | 25.0% |
!! | TTTTGCAAGTCAATGTTATT+TGG | + | chr3.4:19317594-19317613 | MS.gene93583:CDS | 25.0% |
!!! | CATCTTGTTTTGAAATTGTA+AGG | + | chr3.4:19318457-19318476 | MS.gene93583:intron | 25.0% |
!!! | GATTTTGAGAAATTGAGTTA+GGG | - | chr3.4:19318761-19318780 | None:intergenic | 25.0% |
!!! | TGTTGATTTTCTATTGAAGA+TGG | - | chr3.4:19317066-19317085 | None:intergenic | 25.0% |
AAGAATGGAAAAGGATGTTT+GGG | + | chr3.4:19319067-19319086 | MS.gene93583:CDS | 30.0% | |
AGCTAAGGACTAACAAAAAT+GGG | + | chr3.4:19320143-19320162 | MS.gene93583:CDS | 30.0% | |
ATCATCGTAAACTACGAAAA+AGG | - | chr3.4:19317658-19317677 | None:intergenic | 30.0% | |
ATGTGCAATTTCAAGCAAAA+GGG | + | chr3.4:19317342-19317361 | MS.gene93583:CDS | 30.0% | |
ATTACAACCATTTGTAAGGA+AGG | + | chr3.4:19319722-19319741 | MS.gene93583:CDS | 30.0% | |
CAGAATTCTCTTCTATTACA+AGG | - | chr3.4:19317908-19317927 | None:intergenic | 30.0% | |
CATAAGTGACCTATTGTAAA+AGG | - | chr3.4:19319317-19319336 | None:intergenic | 30.0% | |
CTATATTCTAATAGCAGACT+TGG | - | chr3.4:19319496-19319515 | None:intergenic | 30.0% | |
GACTTACCATCAAAGAAAAA+TGG | + | chr3.4:19319190-19319209 | MS.gene93583:CDS | 30.0% | |
GAGAATTACAACCATTTGTA+AGG | + | chr3.4:19319718-19319737 | MS.gene93583:CDS | 30.0% | |
GGTTTATATCCTAAACCATT+TGG | - | chr3.4:19317407-19317426 | None:intergenic | 30.0% | |
TAACTTCTTTGCATTGTTCT+TGG | - | chr3.4:19316949-19316968 | None:intergenic | 30.0% | |
TAAGAATGGAAAAGGATGTT+TGG | + | chr3.4:19319066-19319085 | MS.gene93583:CDS | 30.0% | |
TGAATGTTATCGAAGTTATG+AGG | + | chr3.4:19319228-19319247 | MS.gene93583:CDS | 30.0% | |
TGCGTTCGTGAAAATAAATT+AGG | + | chr3.4:19318735-19318754 | MS.gene93583:intron | 30.0% | |
TTAGGAAACTCTTGGATTAA+TGG | - | chr3.4:19319666-19319685 | None:intergenic | 30.0% | |
TTGAAGAGAAGAAGATGAAA+TGG | - | chr3.4:19317006-19317025 | None:intergenic | 30.0% | |
TTGTAAAAGGGCTACTAAAT+AGG | - | chr3.4:19319304-19319323 | None:intergenic | 30.0% | |
! | AGTCTTTGTAAGTATTTTCG+TGG | - | chr3.4:19318885-19318904 | None:intergenic | 30.0% |
! | ATGAGAAAAAGAGTGAGTTT+TGG | + | chr3.4:19317375-19317394 | MS.gene93583:CDS | 30.0% |
! | ATGGAGTTTATGATTTGTGA+TGG | - | chr3.4:19316987-19317006 | None:intergenic | 30.0% |
! | CATCATTCATTTTCCAAACT+TGG | + | chr3.4:19317209-19317228 | MS.gene93583:CDS | 30.0% |
! | TTCTTTGGTATGTTCAAGTT+TGG | + | chr3.4:19317116-19317135 | MS.gene93583:CDS | 30.0% |
! | TTGCAAGTCAATGTTATTTG+GGG | + | chr3.4:19317596-19317615 | MS.gene93583:CDS | 30.0% |
! | TTTAGTAGCCCTTTTACAAT+AGG | + | chr3.4:19319305-19319324 | MS.gene93583:intron | 30.0% |
! | TTTCTTACTCTGTTTCTTGT+TGG | + | chr3.4:19317092-19317111 | MS.gene93583:CDS | 30.0% |
!! | AAGAATAGTTCACTGCTTTT+TGG | + | chr3.4:19318139-19318158 | MS.gene93583:intron | 30.0% |
!! | AATCTGAAGTTTTACTGCAT+AGG | + | chr3.4:19318362-19318381 | MS.gene93583:intron | 30.0% |
!! | ATAACATTGACTTGCAAAAC+AGG | - | chr3.4:19317593-19317612 | None:intergenic | 30.0% |
!! | CGATTTTGAGAAATTGAGTT+AGG | - | chr3.4:19318762-19318781 | None:intergenic | 30.0% |
!! | GGATAGAAGAAAGTATCTTA+TGG | + | chr3.4:19317478-19317497 | MS.gene93583:CDS | 30.0% |
!! | TATCTTATGGTTGTTGTTTC+TGG | + | chr3.4:19317491-19317510 | MS.gene93583:CDS | 30.0% |
!! | TGATTTGGTTACAGTGAATT+TGG | + | chr3.4:19317957-19317976 | MS.gene93583:intron | 30.0% |
AACACTACTAAGACCAAGTT+TGG | - | chr3.4:19317225-19317244 | None:intergenic | 35.0% | |
AACTGCATCAAGACTCATTA+GGG | + | chr3.4:19320113-19320132 | MS.gene93583:CDS | 35.0% | |
ACAAATGGTTGTAATTCTCC+TGG | - | chr3.4:19319717-19319736 | None:intergenic | 35.0% | |
ACAATCATACCTGAATTGCA+CGG | - | chr3.4:19319827-19319846 | None:intergenic | 35.0% | |
AGAGTTCAACAGGATTATCA+AGG | + | chr3.4:19320090-19320109 | MS.gene93583:CDS | 35.0% | |
ATAGATGTCATCTTCAGTCA+AGG | + | chr3.4:19318226-19318245 | MS.gene93583:intron | 35.0% | |
ATTCCACAAATGTACACTGT+AGG | - | chr3.4:19318200-19318219 | None:intergenic | 35.0% | |
CAAGAACAAGAACAAGAAAG+AGG | + | chr3.4:19317302-19317321 | MS.gene93583:CDS | 35.0% | |
CATCAACACACATAATGACA+AGG | + | chr3.4:19318048-19318067 | MS.gene93583:CDS | 35.0% | |
CATGTGCAATTTCAAGCAAA+AGG | + | chr3.4:19317341-19317360 | MS.gene93583:CDS | 35.0% | |
CCATTCTTAAATGAAGAGCA+AGG | - | chr3.4:19319055-19319074 | None:intergenic | 35.0% | |
CCTTGCTCTTCATTTAAGAA+TGG | + | chr3.4:19319052-19319071 | MS.gene93583:CDS | 35.0% | |
CTCAGAGACTATGTAATCTA+TGG | - | chr3.4:19319763-19319782 | None:intergenic | 35.0% | |
CTTAAATGAAGAGCAAGGTA+AGG | - | chr3.4:19319050-19319069 | None:intergenic | 35.0% | |
CTTGTCATTATGTGTGTTGA+TGG | - | chr3.4:19318050-19318069 | None:intergenic | 35.0% | |
GAGCTAAGGACTAACAAAAA+TGG | + | chr3.4:19320142-19320161 | MS.gene93583:CDS | 35.0% | |
GATGCAAAAATTTATTGGGC+TGG | + | chr3.4:19319606-19319625 | MS.gene93583:CDS | 35.0% | |
GCAGAAAGAATGAAAAGCAA+AGG | + | chr3.4:19319023-19319042 | MS.gene93583:CDS | 35.0% | |
GGACTCAAAATTATTCACAC+AGG | - | chr3.4:19318179-19318198 | None:intergenic | 35.0% | |
GTTGTTATGGCTAGAATTCT+TGG | + | chr3.4:19317551-19317570 | MS.gene93583:CDS | 35.0% | |
TACCATCAAAGAAAAATGGC+TGG | + | chr3.4:19319194-19319213 | MS.gene93583:CDS | 35.0% | |
TCGTATAAGACCATATCATC+AGG | + | chr3.4:19318827-19318846 | MS.gene93583:intron | 35.0% | |
TGGAAGAAACCAAATGGTTT+AGG | + | chr3.4:19317395-19317414 | MS.gene93583:CDS | 35.0% | |
TTGAAGATGGTTGTTCTTGA+AGG | - | chr3.4:19317053-19317072 | None:intergenic | 35.0% | |
TTGTCGTTGTCTGAAGAATT+TGG | + | chr3.4:19317803-19317822 | MS.gene93583:intron | 35.0% | |
! | ACAAGAAAGAGGAGAGTTTT+TGG | + | chr3.4:19317313-19317332 | MS.gene93583:CDS | 35.0% |
! | ATGTTATTTGGGGTGATGAA+AGG | + | chr3.4:19317606-19317625 | MS.gene93583:CDS | 35.0% |
! | ATTTTGTCTACTCTACAAGC+AGG | - | chr3.4:19318414-19318433 | None:intergenic | 35.0% |
! | CAAAAATTTATTGGGCTGGA+GGG | + | chr3.4:19319610-19319629 | MS.gene93583:CDS | 35.0% |
! | GTCTGATGATTTTGTCTTGT+CGG | + | chr3.4:19319967-19319986 | MS.gene93583:intron | 35.0% |
! | TGAGAACTTCTGAAGATTTG+TGG | - | chr3.4:19317180-19317199 | None:intergenic | 35.0% |
! | TTTAGGTTACTGAAAGCTCT+AGG | + | chr3.4:19319573-19319592 | MS.gene93583:intron | 35.0% |
! | TTTTTGTTAGTCCTTAGCTC+TGG | - | chr3.4:19320142-19320161 | None:intergenic | 35.0% |
!! | AGAAAGTGAAAGGGTTTTGA+AGG | + | chr3.4:19317457-19317476 | MS.gene93583:CDS | 35.0% |
!! | AGCATGGTTTTTGAGGAAAT+GGG | - | chr3.4:19317157-19317176 | None:intergenic | 35.0% |
!! | CTGTTTCTTGTTGGTTTCTT+TGG | + | chr3.4:19317101-19317120 | MS.gene93583:CDS | 35.0% |
!! | TTATGGTTGTTGTTTCTGGT+GGG | + | chr3.4:19317495-19317514 | MS.gene93583:CDS | 35.0% |
!!! | GAGTTTTGGAAGAAACCAAA+TGG | + | chr3.4:19317389-19317408 | MS.gene93583:CDS | 35.0% |
ACTATGCAGCTCAATAGAGA+AGG | + | chr3.4:19318540-19318559 | MS.gene93583:intron | 40.0% | |
AGAGAAGCCTTCCTTACAAA+TGG | - | chr3.4:19319732-19319751 | None:intergenic | 40.0% | |
AGTCCTACAGTGTACATTTG+TGG | + | chr3.4:19318194-19318213 | MS.gene93583:intron | 40.0% | |
ATAATGACAAGGCCAGTAGA+AGG | + | chr3.4:19318059-19318078 | MS.gene93583:CDS | 40.0% | |
CCATCTCATGGAGGAAATAT+GGG | + | chr3.4:19319801-19319820 | MS.gene93583:CDS | 40.0% | |
CTTCAGATTGAAGACGCATT+TGG | - | chr3.4:19318351-19318370 | None:intergenic | 40.0% | |
GAACTGCATCAAGACTCATT+AGG | + | chr3.4:19320112-19320131 | MS.gene93583:CDS | 40.0% | |
GATGAATCAACAGAGGAATC+AGG | + | chr3.4:19317517-19317536 | MS.gene93583:CDS | 40.0% | |
GGTTGTTGATGCTGTTGTTA+TGG | + | chr3.4:19317538-19317557 | MS.gene93583:CDS | 40.0% | |
GTATGATTGTCGTTCGACAA+GGG | + | chr3.4:19319837-19319856 | MS.gene93583:intron | 40.0% | |
GTTAATAACCTCGTCGTACT+CGG | - | chr3.4:19319123-19319142 | None:intergenic | 40.0% | |
GTTGTTCTTGAAGGCTTCTT+TGG | - | chr3.4:19317044-19317063 | None:intergenic | 40.0% | |
TCATCTTCAGTCAAGGTCAT+CGG | + | chr3.4:19318233-19318252 | MS.gene93583:intron | 40.0% | |
TCTCACATCACCTGATGATA+TGG | - | chr3.4:19318840-19318859 | None:intergenic | 40.0% | |
TGTAAGGAAGGCTTCTCTAA+TGG | + | chr3.4:19319734-19319753 | MS.gene93583:CDS | 40.0% | |
TGTCAGATACTAACACGAGT+TGG | - | chr3.4:19319876-19319895 | None:intergenic | 40.0% | |
TTAATAACCTCGTCGTACTC+GGG | - | chr3.4:19319122-19319141 | None:intergenic | 40.0% | |
TTGAGCTGCATAGTACAACA+AGG | - | chr3.4:19318534-19318553 | None:intergenic | 40.0% | |
TTGGACATGAAGCACAAACA+CGG | - | chr3.4:19319477-19319496 | None:intergenic | 40.0% | |
TTGTTACCAAGTTCCTCAAC+TGG | - | chr3.4:19318999-19319018 | None:intergenic | 40.0% | |
TTTCAAGCAAAAGGGTCTAG+TGG | + | chr3.4:19317350-19317369 | MS.gene93583:CDS | 40.0% | |
TTTCACAGTCTGCAATCACT+TGG | - | chr3.4:19318926-19318945 | None:intergenic | 40.0% | |
! | AAAGCTTCTTTTCCACCCAA+TGG | - | chr3.4:19319639-19319658 | None:intergenic | 40.0% |
! | ATGCTATTTGTCAGAACACG+AGG | + | chr3.4:19318691-19318710 | MS.gene93583:intron | 40.0% |
! | ATTTTCGTGGCTTTTCTTCG+CGG | - | chr3.4:19318872-19318891 | None:intergenic | 40.0% |
! | GATGTTTTCATGCCATCTCA+TGG | + | chr3.4:19319789-19319808 | MS.gene93583:CDS | 40.0% |
! | GCAAAAATTTATTGGGCTGG+AGG | + | chr3.4:19319609-19319628 | MS.gene93583:CDS | 40.0% |
! | TCTCTGAAGAAGAGTTCAAC+AGG | + | chr3.4:19320080-19320099 | MS.gene93583:CDS | 40.0% |
! | TTCTGAAGATTTGTGGAGCA+TGG | - | chr3.4:19317173-19317192 | None:intergenic | 40.0% |
! | TTTGTGGAGCATGGTTTTTG+AGG | - | chr3.4:19317164-19317183 | None:intergenic | 40.0% |
!! | CTCTTCTGAGATATCTTGCA+CGG | - | chr3.4:19318118-19318137 | None:intergenic | 40.0% |
!! | CTTATGGTTGTTGTTTCTGG+TGG | + | chr3.4:19317494-19317513 | MS.gene93583:CDS | 40.0% |
!! | GAGCATGGTTTTTGAGGAAA+TGG | - | chr3.4:19317158-19317177 | None:intergenic | 40.0% |
!! | GCATGGTTTTTGAGGAAATG+GGG | - | chr3.4:19317156-19317175 | None:intergenic | 40.0% |
!! | TAGAATTCTTGGTGCTGCTT+TGG | + | chr3.4:19317562-19317581 | MS.gene93583:CDS | 40.0% |
!! | TGTTTTGCTTTTACGTGGCT+TGG | + | chr3.4:19318563-19318582 | MS.gene93583:CDS | 40.0% |
!!! | GAAGGTGTTTTGCTTTTACG+TGG | + | chr3.4:19318558-19318577 | MS.gene93583:CDS | 40.0% |
!!! | GTCCAGCCATTTTTCTTTGA+TGG | - | chr3.4:19319199-19319218 | None:intergenic | 40.0% |
!!! | GTTTGGTGTCTGACATGTTT+TGG | + | chr3.4:19317732-19317751 | MS.gene93583:intron | 40.0% |
AAAGACCAGAGCTCTTGACT+GGG | + | chr3.4:19319156-19319175 | MS.gene93583:CDS | 45.0% | |
AAATATGGGCCGTGCAATTC+AGG | + | chr3.4:19319815-19319834 | MS.gene93583:CDS | 45.0% | |
CATCATTGCACATGCACTCA+GGG | - | chr3.4:19320192-19320211 | None:intergenic | 45.0% | |
CCACTCTCACATCATTTGCA+AGG | - | chr3.4:19318016-19318035 | None:intergenic | 45.0% | |
CCCATATTTCCTCCATGAGA+TGG | - | chr3.4:19319804-19319823 | None:intergenic | 45.0% | |
CCTTGCAAATGATGTGAGAG+TGG | + | chr3.4:19318013-19318032 | MS.gene93583:CDS | 45.0% | |
GCCATCTCATGGAGGAAATA+TGG | + | chr3.4:19319800-19319819 | MS.gene93583:CDS | 45.0% | |
GGTATGATTGTCGTTCGACA+AGG | + | chr3.4:19319836-19319855 | MS.gene93583:intron | 45.0% | |
TATCTTGCACGGATCCAACT+CGG | - | chr3.4:19318107-19318126 | None:intergenic | 45.0% | |
TCATCATTGCACATGCACTC+AGG | - | chr3.4:19320193-19320212 | None:intergenic | 45.0% | |
TCTTCAGAAGCTTCGTTGCA+AGG | + | chr3.4:19318617-19318636 | MS.gene93583:CDS | 45.0% | |
TGGAAAAGGATGTTTGGGTG+AGG | + | chr3.4:19319072-19319091 | MS.gene93583:CDS | 45.0% | |
TGGTTGTAATTCTCCTGGCA+AGG | - | chr3.4:19319712-19319731 | None:intergenic | 45.0% | |
! | CGAAGCTTCTGAAGATCAGA+AGG | - | chr3.4:19318612-19318631 | None:intergenic | 45.0% |
! | CTTCACATTGAAGGCGTGTT+TGG | + | chr3.4:19317715-19317734 | MS.gene93583:intron | 45.0% |
! | GGAAGCATGTGTCTCTTGTT+TGG | - | chr3.4:19320040-19320059 | None:intergenic | 45.0% |
! | GTTTTCATGCCATCTCATGG+AGG | + | chr3.4:19319792-19319811 | MS.gene93583:CDS | 45.0% |
! | TTTGAGGAAATGGGGTGTCA+GGG | - | chr3.4:19317148-19317167 | None:intergenic | 45.0% |
! | TTTGTCTTGTCGGTGCTTCA+GGG | + | chr3.4:19319977-19319996 | MS.gene93583:intron | 45.0% |
!! | AAGATTTGCTGAGCCAGTTG+AGG | + | chr3.4:19318983-19319002 | MS.gene93583:CDS | 45.0% |
!! | TTTTGAGGAAATGGGGTGTC+AGG | - | chr3.4:19317149-19317168 | None:intergenic | 45.0% |
!! | TTTTGTCTTGTCGGTGCTTC+AGG | + | chr3.4:19319976-19319995 | MS.gene93583:intron | 45.0% |
AAGGAAGATCTTGCCTTGCC+AGG | + | chr3.4:19319696-19319715 | MS.gene93583:CDS | 50.0% | |
AAGGATGTTTGGGTGAGGAC+AGG | + | chr3.4:19319077-19319096 | MS.gene93583:CDS | 50.0% | |
CAAAGACCAGAGCTCTTGAC+TGG | + | chr3.4:19319155-19319174 | MS.gene93583:CDS | 50.0% | |
CACGGACACATGACATGACA+CGG | - | chr3.4:19319459-19319478 | None:intergenic | 50.0% | |
CTCATGATGACCACCCACAT+CGG | - | chr3.4:19319345-19319364 | None:intergenic | 50.0% | |
CTGGTGGGATGAATCAACAG+AGG | + | chr3.4:19317510-19317529 | MS.gene93583:CDS | 50.0% | |
CTTGGACTCGAGGCTTTCTA+AGG | + | chr3.4:19318581-19318600 | MS.gene93583:CDS | 50.0% | |
TGACAAGGCCAGTAGAAGGA+AGG | + | chr3.4:19318063-19318082 | MS.gene93583:CDS | 50.0% | |
! | CAGGGTCATAGGGCATTTAC+TGG | + | chr3.4:19319995-19320014 | MS.gene93583:intron | 50.0% |
! | GCACTGACGCTTCACATTGA+AGG | + | chr3.4:19317706-19317725 | MS.gene93583:intron | 50.0% |
!! | CACTTATGCAGCACCGATGT+GGG | + | chr3.4:19319329-19319348 | MS.gene93583:intron | 50.0% |
!! | TCACTTATGCAGCACCGATG+TGG | + | chr3.4:19319328-19319347 | MS.gene93583:intron | 50.0% |
!! | TTTTACGTGGCTTGGACTCG+AGG | + | chr3.4:19318571-19318590 | MS.gene93583:CDS | 50.0% |
AGTGGAGGCCTTCCTTCTAC+TGG | - | chr3.4:19318074-19318093 | None:intergenic | 55.0% | |
CAACTCGGAGTGGCATGAAG+TGG | - | chr3.4:19318092-19318111 | None:intergenic | 55.0% | |
CACTTCATGCCACTCCGAGT+TGG | + | chr3.4:19318090-19318109 | MS.gene93583:CDS | 55.0% | |
CATTAGGGCAGCCAGAGCTA+AGG | + | chr3.4:19320128-19320147 | MS.gene93583:CDS | 55.0% | |
CGTACTCGGGACTTAGACCA+GGG | - | chr3.4:19319109-19319128 | None:intergenic | 55.0% | |
GATCTCCCAGTCAAGAGCTC+TGG | - | chr3.4:19319164-19319183 | None:intergenic | 55.0% | |
GCACTCAGGGACAGGATACT+TGG | - | chr3.4:19320179-19320198 | None:intergenic | 55.0% | |
GCTGAGCCAGTTGAGGAACT+TGG | + | chr3.4:19318990-19319009 | MS.gene93583:CDS | 55.0% | |
TCGTACTCGGGACTTAGACC+AGG | - | chr3.4:19319110-19319129 | None:intergenic | 55.0% | |
TCTAAGTCCCGAGTACGACG+AGG | + | chr3.4:19319112-19319131 | MS.gene93583:CDS | 55.0% | |
TTGCACATGCACTCAGGGAC+AGG | - | chr3.4:19320187-19320206 | None:intergenic | 55.0% | |
! | GTCGGTGCTTCAGGGTCATA+GGG | + | chr3.4:19319985-19320004 | MS.gene93583:intron | 55.0% |
! | TGGGCTGGAGGGAAACCATT+GGG | + | chr3.4:19319621-19319640 | MS.gene93583:CDS | 55.0% |
! | TGTCGGTGCTTCAGGGTCAT+AGG | + | chr3.4:19319984-19320003 | MS.gene93583:intron | 55.0% |
! | TTGGGCTGGAGGGAAACCAT+TGG | + | chr3.4:19319620-19319639 | MS.gene93583:CDS | 55.0% |
!! | TTATGCAGCACCGATGTGGG+TGG | + | chr3.4:19319332-19319351 | MS.gene93583:intron | 55.0% |
CTCGGAGTGGCATGAAGTGG+AGG | - | chr3.4:19318089-19318108 | None:intergenic | 60.0% | |
GCTGGAGGGAAACCATTGGG+TGG | + | chr3.4:19319624-19319643 | MS.gene93583:CDS | 60.0% | |
GTGAGGACAGGTTGTCTCCC+TGG | + | chr3.4:19319089-19319108 | MS.gene93583:CDS | 60.0% | |
TGCACGGATCCAACTCGGAG+TGG | - | chr3.4:19318102-19318121 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 19316936 | 19320231 | 19316936 | ID=MS.gene93583 |
chr3.4 | mRNA | 19316936 | 19320231 | 19316936 | ID=MS.gene93583.t1;Parent=MS.gene93583 |
chr3.4 | exon | 19316936 | 19317627 | 19316936 | ID=MS.gene93583.t1.exon1;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19316936 | 19317627 | 19316936 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
chr3.4 | exon | 19317971 | 19318136 | 19317971 | ID=MS.gene93583.t1.exon2;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19317971 | 19318136 | 19317971 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
chr3.4 | exon | 19318549 | 19318638 | 19318549 | ID=MS.gene93583.t1.exon3;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19318549 | 19318638 | 19318549 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
chr3.4 | exon | 19318966 | 19319249 | 19318966 | ID=MS.gene93583.t1.exon4;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19318966 | 19319249 | 19318966 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
chr3.4 | exon | 19319578 | 19319836 | 19319578 | ID=MS.gene93583.t1.exon5;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19319578 | 19319836 | 19319578 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
chr3.4 | exon | 19320025 | 19320231 | 19320025 | ID=MS.gene93583.t1.exon6;Parent=MS.gene93583.t1 |
chr3.4 | CDS | 19320025 | 19320231 | 19320025 | ID=cds.MS.gene93583.t1;Parent=MS.gene93583.t1 |
Gene Sequence |
Protein sequence |