Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93589.t1 | RHN66111.1 | 90.9 | 44 | 4 | 0 | 2 | 45 | 1 | 44 | 4.20E-09 | 72.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93589.t1 | A0A072UUW0 | 90.9 | 44 | 4 | 0 | 2 | 45 | 1 | 44 | 3.0e-09 | 72.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene93589 | 0.802914 | 4.47E-49 | -1.69E-46 |
| MS.gene053568 | MS.gene93589 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene93589 | 0.820791 | 5.69E-53 | -1.69E-46 |
| MS.gene058067 | MS.gene93589 | 0.831358 | 1.75E-55 | -1.69E-46 |
| MS.gene058068 | MS.gene93589 | 0.830728 | 2.49E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93589.t1 | MTR_3g026290 | 79.064 | 406 | 39 | 3 | 2 | 407 | 1 | 360 | 1.61e-176 | 496 |
| MS.gene93589.t1 | MTR_3g026330 | 75.616 | 406 | 37 | 4 | 2 | 407 | 1 | 344 | 2.21e-163 | 462 |
| MS.gene93589.t1 | MTR_3g026230 | 70.480 | 271 | 52 | 7 | 2 | 269 | 1 | 246 | 4.54e-87 | 265 |
| MS.gene93589.t1 | MTR_3g026230 | 65.145 | 241 | 56 | 7 | 170 | 407 | 37 | 252 | 3.40e-60 | 196 |
| MS.gene93589.t1 | MTR_3g026230 | 65.502 | 229 | 54 | 5 | 153 | 378 | 39 | 245 | 4.54e-59 | 193 |
| MS.gene93589.t1 | MTR_3g026230 | 58.394 | 137 | 36 | 4 | 285 | 400 | 30 | 166 | 5.22e-19 | 86.3 |
| MS.gene93589.t1 | MTR_3g026160 | 65.263 | 190 | 38 | 4 | 2 | 176 | 1 | 177 | 4.58e-56 | 183 |
| MS.gene93589.t1 | MTR_3g026160 | 67.485 | 163 | 30 | 3 | 107 | 269 | 39 | 178 | 4.55e-43 | 149 |
| MS.gene93589.t1 | MTR_3g026160 | 72.340 | 141 | 34 | 3 | 153 | 290 | 39 | 177 | 1.09e-38 | 137 |
| MS.gene93589.t1 | MTR_3g026160 | 67.647 | 136 | 30 | 2 | 200 | 321 | 40 | 175 | 9.81e-35 | 127 |
| MS.gene93589.t1 | MTR_3g026160 | 67.568 | 148 | 35 | 4 | 273 | 407 | 37 | 184 | 3.09e-34 | 125 |
| MS.gene93589.t1 | MTR_3g026160 | 65.789 | 114 | 34 | 3 | 292 | 400 | 29 | 142 | 1.99e-22 | 94.0 |
| MS.gene93589.t1 | MTR_3g026240 | 50.926 | 108 | 40 | 3 | 2 | 98 | 1 | 106 | 1.16e-19 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93589.t1 | AT5G09530 | 54.768 | 409 | 133 | 9 | 1 | 399 | 4 | 370 | 3.46e-86 | 267 |
| MS.gene93589.t1 | AT5G09530 | 63.259 | 313 | 89 | 6 | 103 | 400 | 39 | 340 | 6.77e-77 | 243 |
| MS.gene93589.t1 | AT5G09530 | 63.251 | 283 | 76 | 7 | 124 | 400 | 36 | 296 | 4.04e-69 | 223 |
| MS.gene93589.t1 | AT5G09530 | 63.372 | 172 | 61 | 1 | 230 | 401 | 39 | 208 | 3.51e-42 | 152 |
| MS.gene93589.t1 | AT5G09530 | 63.303 | 109 | 40 | 0 | 292 | 400 | 33 | 141 | 4.20e-23 | 100 |
| MS.gene93589.t1 | AT5G09520 | 59.615 | 104 | 33 | 2 | 146 | 249 | 34 | 128 | 3.05e-20 | 86.7 |
| MS.gene93589.t1 | AT5G09520 | 59.804 | 102 | 32 | 2 | 192 | 293 | 34 | 126 | 1.81e-19 | 84.3 |
| MS.gene93589.t1 | AT5G09520 | 61.000 | 100 | 27 | 3 | 105 | 204 | 39 | 126 | 4.70e-19 | 83.2 |
| MS.gene93589.t1 | AT5G09520 | 53.398 | 103 | 43 | 1 | 292 | 394 | 31 | 128 | 9.91e-18 | 79.3 |
| MS.gene93589.t1 | AT5G09520 | 39.130 | 161 | 54 | 5 | 8 | 165 | 9 | 128 | 3.39e-16 | 75.1 |
| MS.gene93589.t1 | AT5G09520 | 52.427 | 103 | 42 | 2 | 273 | 374 | 34 | 130 | 7.70e-15 | 71.2 |
| MS.gene93589.t1 | AT5G09520 | 49.565 | 115 | 40 | 3 | 238 | 352 | 34 | 130 | 1.62e-14 | 70.5 |
| MS.gene93589.t1 | AT5G09520 | 52.830 | 106 | 41 | 4 | 170 | 275 | 34 | 130 | 5.50e-14 | 68.9 |
| MS.gene93589.t1 | AT5G09520 | 53.763 | 93 | 32 | 3 | 306 | 395 | 34 | 118 | 1.14e-11 | 62.4 |
Find 111 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAGGTAACTCTGGTATTT+TGG | 0.089603 | 3.4:+19107644 | None:intergenic |
| ATTTCTAGATTTGGCATTTC+AGG | 0.197804 | 3.4:+19108485 | None:intergenic |
| AGTTCAGGCTTTGGCATTTC+AGG | 0.201344 | 3.4:+19108038 | None:intergenic |
| TGCTCTAGCTTAGGTGATTC+AGG | 0.217501 | 3.4:+19108104 | None:intergenic |
| TGCTCTAGCTTAGGTGATTC+AGG | 0.217501 | 3.4:+19108242 | None:intergenic |
| CTCGGGGACTTTAGGGAGTT+TGG | 0.229602 | 3.4:+19107719 | None:intergenic |
| TCAGGTACTTTAGGAATTTC+AGG | 0.229861 | 3.4:+19108056 | None:intergenic |
| TCAGGTACTTTAGGAATTTC+AGG | 0.229861 | 3.4:+19108194 | None:intergenic |
| TTAGGTAACTCGGGGACTTT+AGG | 0.244084 | 3.4:+19107711 | None:intergenic |
| TCAGGTACCTTTGGAAAATC+TGG | 0.263505 | 3.4:+19108575 | None:intergenic |
| TAGTTCAGGCTTTGGTAATT+CGG | 0.273135 | 3.4:+19108451 | None:intergenic |
| AGTTCATGCTTTGGCATTTC+AGG | 0.274795 | 3.4:+19108176 | None:intergenic |
| TTTGGCATTTCAGGTACTTT+AGG | 0.274955 | 3.4:+19108185 | None:intergenic |
| AGTTCAGGCTTTGGCATTTC+AGG | 0.277091 | 3.4:+19108314 | None:intergenic |
| TTTGGCATTTCAGGTACTTT+AGG | 0.284794 | 3.4:+19108047 | None:intergenic |
| TTTGGCATTTCAGGTACTTT+AGG | 0.284794 | 3.4:+19108323 | None:intergenic |
| TTTGGAAATTCAGGAATCTT+AGG | 0.288654 | 3.4:+19107612 | None:intergenic |
| TTCAGGTACATTTGGTAAAT+CGG | 0.295675 | 3.4:+19108502 | None:intergenic |
| TTTGGTAATTCGGGCCCTTT+AGG | 0.297052 | 3.4:+19108461 | None:intergenic |
| TTAGGGAATTCAGGGGCTTT+AGG | 0.299732 | 3.4:+19107975 | None:intergenic |
| AGCTCGGGTTTCGGCAGTTC+AGG | 0.300108 | 3.4:+19107999 | None:intergenic |
| TTAGGTAATTCAGGAACTTT+AGG | 0.308829 | 3.4:+19107777 | None:intergenic |
| ACTTTAGGTAGCTCAGGTTT+TGG | 0.309843 | 3.4:+19107594 | None:intergenic |
| ACATTTGGTAAATCGGGTTT+TGG | 0.322738 | 3.4:+19108509 | None:intergenic |
| ACATCAGGCTTTGATAATTC+AGG | 0.322969 | 3.4:+19108557 | None:intergenic |
| AATAAAGCTAGAAACATAAA+TGG | 0.323579 | 3.4:+19108719 | None:intergenic |
| ACTTTAGGAATTTCAGGTTT+TGG | 0.325465 | 3.4:+19108062 | None:intergenic |
| ACTTTAGGAATTTCAGGTTT+TGG | 0.325465 | 3.4:+19108200 | None:intergenic |
| TTTGGAGTTTCTCGGACTTT+AGG | 0.326222 | 3.4:+19107579 | None:intergenic |
| ACATCCGACTTAGGGAATTC+AGG | 0.330532 | 3.4:+19107966 | None:intergenic |
| CCTTTAGGAATTTCTAGATT+TGG | 0.339409 | 3.4:+19108476 | None:intergenic |
| AACTTAGGCAGTTCAGGCTT+TGG | 0.349661 | 3.4:+19108305 | None:intergenic |
| ACCTGAACCAGGGCTATCTA+AGG | 0.350632 | 3.4:-19107892 | MS.gene93589:CDS |
| ACCTTTGGAAAATCTGGCTT+TGG | 0.350834 | 3.4:+19108581 | None:intergenic |
| ACATTAAACTTAGGCAGTTC+AGG | 0.351885 | 3.4:+19108299 | None:intergenic |
| TAGGTAACTCGGGGACTTTA+GGG | 0.367520 | 3.4:+19107712 | None:intergenic |
| AACTCAGGTTTAGGTAATTC+AGG | 0.368433 | 3.4:+19107768 | None:intergenic |
| AGTTCAGGCTTTGGTAATTC+GGG | 0.369186 | 3.4:+19108452 | None:intergenic |
| ACGTTAAACTTAGGTAGTTC+AGG | 0.370780 | 3.4:+19108023 | None:intergenic |
| AACTTAGGCAGTTCATGCTT+TGG | 0.374362 | 3.4:+19108167 | None:intergenic |
| TTTGGCATTTCAGGTACATT+TGG | 0.374470 | 3.4:+19108494 | None:intergenic |
| AACTTAGGTAGTTCAGGCTT+TGG | 0.376104 | 3.4:+19108029 | None:intergenic |
| AATGATAGTTGACAAATTGA+TGG | 0.379936 | 3.4:+19108745 | None:intergenic |
| TCGGGGACTTTAGGGAGTTT+GGG | 0.388929 | 3.4:+19107720 | None:intergenic |
| GCTTTAGGAAGCTCGTGTTT+TGG | 0.389220 | 3.4:+19107924 | None:intergenic |
| ACCTTAGGCTGCTCTAGTTT+AGG | 0.391315 | 3.4:+19107693 | None:intergenic |
| CAATTCAGGAACGCTAAACT+TGG | 0.395082 | 3.4:+19108427 | None:intergenic |
| TTTGATAATTCAGGTACCTT+TGG | 0.395324 | 3.4:+19108566 | None:intergenic |
| ACGCTAAACTTGGGTAGTTC+AGG | 0.399917 | 3.4:+19108437 | None:intergenic |
| AATTCATGTAAAGAAGGTTT+TGG | 0.401002 | 3.4:+19108605 | None:intergenic |
| ACCTTAGATAGCCCTGGTTC+AGG | 0.405930 | 3.4:+19107891 | None:intergenic |
| ATAGTAACACAAGGGTTGTC+GGG | 0.407554 | 3.4:-19108688 | MS.gene93589:CDS |
| AGAGGTGGAAAATCAAGTTT+TGG | 0.411861 | 3.4:+19108629 | None:intergenic |
| ATCCTAGGCAACTCAGGTTT+AGG | 0.411901 | 3.4:+19107759 | None:intergenic |
| AACTCAGGAACATTAATCTT+AGG | 0.412261 | 3.4:+19108533 | None:intergenic |
| GCTTTAGGAAGCTCGGGTTT+CGG | 0.416557 | 3.4:+19107990 | None:intergenic |
| TCAGGTACATTTGGTAAATC+GGG | 0.418005 | 3.4:+19108503 | None:intergenic |
| GTGGTGGTTGGAACGACTTT+TGG | 0.422489 | 3.4:+19107561 | None:intergenic |
| TTTGGAAGTTCAGGAACCTT+AGG | 0.429270 | 3.4:+19107942 | None:intergenic |
| TTTGTCAATTCAGGAACCTT+AGG | 0.435005 | 3.4:+19107678 | None:intergenic |
| AACTTGGGTAGTTCAGGCTT+TGG | 0.435785 | 3.4:+19108443 | None:intergenic |
| TTTGGCAATTCAGGAACCTT+AGG | 0.442441 | 3.4:+19108080 | None:intergenic |
| TTTGGCAATTCAGGAACCTT+AGG | 0.442441 | 3.4:+19108218 | None:intergenic |
| TTTGGCAATTCAGGAACCTT+AGG | 0.442441 | 3.4:+19108356 | None:intergenic |
| TTCAGGGGCTTTAGGAAGCT+CGG | 0.447743 | 3.4:+19107983 | None:intergenic |
| TTTGGTAATTCATGTAAAGA+AGG | 0.447865 | 3.4:+19108599 | None:intergenic |
| ACATTAATCTTAGGAACATC+AGG | 0.453646 | 3.4:+19108542 | None:intergenic |
| CATCCGACTTAGGGAATTCA+GGG | 0.455443 | 3.4:+19107967 | None:intergenic |
| ATCTTAGGCAATTCTAGCTT+AGG | 0.455532 | 3.4:+19107627 | None:intergenic |
| CTGCTCTAGTTTAGGTAACT+CGG | 0.471107 | 3.4:+19107701 | None:intergenic |
| TGCTCTAGTTTAGGTAACTC+GGG | 0.474750 | 3.4:+19107702 | None:intergenic |
| GCTCTAGCTTAGGTGATTCA+GGG | 0.478301 | 3.4:+19108105 | None:intergenic |
| GCTCTAGCTTAGGTGATTCA+GGG | 0.478301 | 3.4:+19108243 | None:intergenic |
| CAAATCTAGAAATTCCTAAA+GGG | 0.482792 | 3.4:-19108475 | MS.gene93589:CDS |
| TCTCGGACTTTAGGTAGCTC+AGG | 0.483115 | 3.4:+19107588 | None:intergenic |
| CCCTAAGTCGGATGTTCCTA+AGG | 0.483588 | 3.4:-19107958 | MS.gene93589:CDS |
| CCAAATCTAGAAATTCCTAA+AGG | 0.493421 | 3.4:-19108476 | MS.gene93589:CDS |
| CCTTAGGAACATCCGACTTA+GGG | 0.496338 | 3.4:+19107958 | None:intergenic |
| ACCTTAGGAACATCCGACTT+AGG | 0.497442 | 3.4:+19107957 | None:intergenic |
| AATTCAGGAACATTAAACTT+AGG | 0.497894 | 3.4:+19108152 | None:intergenic |
| AATTCAGGAACATTAAACTT+AGG | 0.497894 | 3.4:+19108290 | None:intergenic |
| TCAGGGGCTTTAGGAAGCTC+GGG | 0.506602 | 3.4:+19107984 | None:intergenic |
| AGTTCAGGAACGTTAAACTT+AGG | 0.511063 | 3.4:+19108014 | None:intergenic |
| TCAGGAACTTTAGGCAACTC+AGG | 0.512033 | 3.4:+19107786 | None:intergenic |
| AGCCCTGGTTCAGGTAACTC+GGG | 0.516644 | 3.4:+19107900 | None:intergenic |
| AATAGTAACACAAGGGTTGT+CGG | 0.517683 | 3.4:-19108689 | MS.gene93589:CDS |
| ACCTTAGGCTGCTCTAGCTT+AGG | 0.528580 | 3.4:+19108095 | None:intergenic |
| ACCTTAGGCTGCTCTAGCTT+AGG | 0.528580 | 3.4:+19108233 | None:intergenic |
| ACCTTAGGCTGCTCTAGCTT+AGG | 0.528580 | 3.4:+19108371 | None:intergenic |
| ATTGTGGCTTAGGTAACTCA+TGG | 0.531955 | 3.4:+19107835 | None:intergenic |
| AATTCTAGCTTAGGTAACTC+TGG | 0.533128 | 3.4:+19107636 | None:intergenic |
| CCAACTTAAGGCGTGGTGGT+TGG | 0.535712 | 3.4:+19107549 | None:intergenic |
| TAGCCCTGGTTCAGGTAACT+CGG | 0.537836 | 3.4:+19107899 | None:intergenic |
| TCGGAAATCCTAGGCAACTC+AGG | 0.539174 | 3.4:+19107753 | None:intergenic |
| TCAGAAACCTTAGATAGCCC+TGG | 0.540598 | 3.4:+19107885 | None:intergenic |
| TACCTAAACCTGAGTTGCCT+AGG | 0.549181 | 3.4:-19107761 | MS.gene93589:CDS |
| GCCCTGGTTCAGGTAACTCG+GGG | 0.570420 | 3.4:+19107901 | None:intergenic |
| ACCTAAGCTAGAGCAGCCTA+AGG | 0.584617 | 3.4:-19108096 | MS.gene93589:CDS |
| ACCTAAGCTAGAGCAGCCTA+AGG | 0.584617 | 3.4:-19108234 | MS.gene93589:CDS |
| ACCTAAGCTAGAGCAGCCTA+AGG | 0.584617 | 3.4:-19108372 | MS.gene93589:CDS |
| AGCCCCTGAATTCCCTAAGT+CGG | 0.589665 | 3.4:-19107970 | MS.gene93589:CDS |
| CCAAGTTCCAACTTAAGGCG+TGG | 0.615492 | 3.4:+19107542 | None:intergenic |
| AATTCAGGAACGCTAAACTT+GGG | 0.618805 | 3.4:+19108428 | None:intergenic |
| ACCTAAACTAGAGCAGCCTA+AGG | 0.623761 | 3.4:-19107694 | MS.gene93589:CDS |
| TAGTAACACAAGGGTTGTCG+GGG | 0.626806 | 3.4:-19108687 | MS.gene93589:CDS |
| TGTCAACAAATAGTAACACA+AGG | 0.643639 | 3.4:-19108697 | MS.gene93589:CDS |
| GTCAACAAATAGTAACACAA+GGG | 0.665196 | 3.4:-19108696 | MS.gene93589:CDS |
| GCTCTAGTTTAGGTAACTCG+GGG | 0.677089 | 3.4:+19107703 | None:intergenic |
| AGTTCCAACTTAAGGCGTGG+TGG | 0.679624 | 3.4:+19107545 | None:intergenic |
| ATCCGACTTAGGGAATTCAG+GGG | 0.692397 | 3.4:+19107968 | None:intergenic |
| CCCTGGTTCAGGTAACTCGG+GGG | 0.701958 | 3.4:+19107902 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGCTAGAAACATAAA+TGG | + | chr3.4:19107593-19107612 | None:intergenic | 20.0% |
| ! | AATGATAGTTGACAAATTGA+TGG | + | chr3.4:19107567-19107586 | None:intergenic | 25.0% |
| ! | AATTCAGGAACATTAAACTT+AGG | + | chr3.4:19108022-19108041 | None:intergenic | 25.0% |
| ! | CAAATCTAGAAATTCCTAAA+GGG | - | chr3.4:19107834-19107853 | MS.gene93589:CDS | 25.0% |
| !! | AATTCATGTAAAGAAGGTTT+TGG | + | chr3.4:19107707-19107726 | None:intergenic | 25.0% |
| !! | TTTGGTAATTCATGTAAAGA+AGG | + | chr3.4:19107713-19107732 | None:intergenic | 25.0% |
| !!! | ACTTTAGGAATTTTAGGTTT+TGG | + | chr3.4:19107974-19107993 | None:intergenic | 25.0% |
| AACTCAGGAACATTAATCTT+AGG | + | chr3.4:19107779-19107798 | None:intergenic | 30.0% | |
| ACATTAATCTTAGGAACATC+AGG | + | chr3.4:19107770-19107789 | None:intergenic | 30.0% | |
| CCAAATCTAGAAATTCCTAA+AGG | - | chr3.4:19107833-19107852 | MS.gene93589:CDS | 30.0% | |
| GTCAACAAATAGTAACACAA+GGG | - | chr3.4:19107613-19107632 | MS.gene93589:CDS | 30.0% | |
| TGTCAACAAATAGTAACACA+AGG | - | chr3.4:19107612-19107631 | MS.gene93589:CDS | 30.0% | |
| TTAGGTAATTCAGGAACTTT+AGG | + | chr3.4:19108535-19108554 | None:intergenic | 30.0% | |
| TTCAGGTACATTTGGTAAAT+CGG | + | chr3.4:19107810-19107829 | None:intergenic | 30.0% | |
| TTTGGAAATTCAGGAATCTT+AGG | + | chr3.4:19108700-19108719 | None:intergenic | 30.0% | |
| ! | ATTTCTAGATTTGGCATTTC+AGG | + | chr3.4:19107827-19107846 | None:intergenic | 30.0% |
| ! | CCTTTAGGAATTTCTAGATT+TGG | + | chr3.4:19107836-19107855 | None:intergenic | 30.0% |
| ! | TTAGGTAACTCATGGATTTT+AGG | + | chr3.4:19108469-19108488 | None:intergenic | 30.0% |
| ! | TTAGGTAACTCTGGTATTTT+GGG | + | chr3.4:19108667-19108686 | None:intergenic | 30.0% |
| ! | TTTCTCAATTCAGGAGTTTT+AGG | + | chr3.4:19108502-19108521 | None:intergenic | 30.0% |
| ! | TTTGATAATTCAGGTACCTT+TGG | + | chr3.4:19107746-19107765 | None:intergenic | 30.0% |
| !! | ATTTTAGGCAATTCAGGTTT+TGG | + | chr3.4:19108454-19108473 | None:intergenic | 30.0% |
| !! | ATTTTAGGTAGTTCAGGTTT+TGG | + | chr3.4:19107908-19107927 | None:intergenic | 30.0% |
| !! | TCAGGTACTTTAGGAATTTT+AGG | + | chr3.4:19107980-19107999 | None:intergenic | 30.0% |
| !!! | ACTTTAGGAATTTCAGGTTT+TGG | + | chr3.4:19108112-19108131 | None:intergenic | 30.0% |
| !!! | ATTTTAGGTTTTGGCAATTC+AGG | + | chr3.4:19107965-19107984 | None:intergenic | 30.0% |
| AACTCAGGTTTAGGTAATTC+AGG | + | chr3.4:19108544-19108563 | None:intergenic | 35.0% | |
| AATAGTAACACAAGGGTTGT+CGG | - | chr3.4:19107620-19107639 | MS.gene93589:CDS | 35.0% | |
| AATTCAGGAACGCTAAACTT+GGG | + | chr3.4:19107884-19107903 | None:intergenic | 35.0% | |
| ACATTAAACTTAGGCAGTTC+AGG | + | chr3.4:19108013-19108032 | None:intergenic | 35.0% | |
| ACGTTAAACTTAGGTAGTTC+AGG | + | chr3.4:19108289-19108308 | None:intergenic | 35.0% | |
| AGTTCAGGAACGTTAAACTT+AGG | + | chr3.4:19108298-19108317 | None:intergenic | 35.0% | |
| TCAGGTACATTTGGTAAATC+GGG | + | chr3.4:19107809-19107828 | None:intergenic | 35.0% | |
| TTTGTCAATTCAGGAACCTT+AGG | + | chr3.4:19108634-19108653 | None:intergenic | 35.0% | |
| ! | AACTCAGGTTTTCTCAATTC+AGG | + | chr3.4:19108511-19108530 | None:intergenic | 35.0% |
| ! | ACATCAGGCTTTGATAATTC+AGG | + | chr3.4:19107755-19107774 | None:intergenic | 35.0% |
| ! | ACATTTGGTAAATCGGGTTT+TGG | + | chr3.4:19107803-19107822 | None:intergenic | 35.0% |
| ! | AGAGGTGGAAAATCAAGTTT+TGG | + | chr3.4:19107683-19107702 | None:intergenic | 35.0% |
| ! | CTTAGGTAACTCTGGTATTT+TGG | + | chr3.4:19108668-19108687 | None:intergenic | 35.0% |
| ! | TAGTTCAGGCTTTGGTAATT+CGG | + | chr3.4:19107861-19107880 | None:intergenic | 35.0% |
| ! | TCAGGTACTTTAGGAATTTC+AGG | + | chr3.4:19108118-19108137 | None:intergenic | 35.0% |
| ! | TCATGGATTTTAGGCAATTC+AGG | + | chr3.4:19108460-19108479 | None:intergenic | 35.0% |
| ! | TTAGGTGATTCAGCGATTTT+AGG | + | chr3.4:19107923-19107942 | None:intergenic | 35.0% |
| ! | TTAGGTGATTCAGGGATTTT+AGG | + | chr3.4:19108061-19108080 | None:intergenic | 35.0% |
| ! | TTTGGCATTTCAGGTACATT+TGG | + | chr3.4:19107818-19107837 | None:intergenic | 35.0% |
| ! | TTTGGCATTTCAGGTACTTT+AGG | + | chr3.4:19107989-19108008 | None:intergenic | 35.0% |
| ! | TTTTGCATTTCGGAAATCCT+AGG | + | chr3.4:19108568-19108587 | None:intergenic | 35.0% |
| !! | AATTCTAGCTTAGGTAACTC+TGG | + | chr3.4:19108676-19108695 | None:intergenic | 35.0% |
| !! | ATCTTAGGCAATTCTAGCTT+AGG | + | chr3.4:19108685-19108704 | None:intergenic | 35.0% |
| !! | ATTTTAGGTAGTTCGGGTTT+TGG | + | chr3.4:19108046-19108065 | None:intergenic | 35.0% |
| !! | GAGTTTGGGTTTTTGCATTT+CGG | + | chr3.4:19108578-19108597 | None:intergenic | 35.0% |
| !! | TGTAAAGAAGGTTTTGGTAG+AGG | + | chr3.4:19107701-19107720 | None:intergenic | 35.0% |
| !! | TTCAGGGATTTTAGGTAGTT+CGG | + | chr3.4:19108053-19108072 | None:intergenic | 35.0% |
| !!! | ATTTCAGGTTTTGGCAATTC+AGG | + | chr3.4:19108103-19108122 | None:intergenic | 35.0% |
| AACTTAGGCAGTTCATGCTT+TGG | + | chr3.4:19108145-19108164 | None:intergenic | 40.0% | |
| AACTTAGGTAGTTCAGGCTT+TGG | + | chr3.4:19108283-19108302 | None:intergenic | 40.0% | |
| AGTTCATGCTTTGGCATTTC+AGG | + | chr3.4:19108136-19108155 | None:intergenic | 40.0% | |
| ATAGTAACACAAGGGTTGTC+GGG | - | chr3.4:19107621-19107640 | MS.gene93589:CDS | 40.0% | |
| ATTGTGGCTTAGGTAACTCA+TGG | + | chr3.4:19108477-19108496 | None:intergenic | 40.0% | |
| CAATTCAGGAACGCTAAACT+TGG | + | chr3.4:19107885-19107904 | None:intergenic | 40.0% | |
| TTTGGAAGTTCAGGAACCTT+AGG | + | chr3.4:19108370-19108389 | None:intergenic | 40.0% | |
| TTTGGCAATTCAGGAACCTT+AGG | + | chr3.4:19107956-19107975 | None:intergenic | 40.0% | |
| ! | ACCAAAGCCAGATTTTCCAA+AGG | - | chr3.4:19107727-19107746 | MS.gene93589:CDS | 40.0% |
| ! | ACCTTTGGAAAATCTGGCTT+TGG | + | chr3.4:19107731-19107750 | None:intergenic | 40.0% |
| ! | ACTTTAGGTAGCTCAGGTTT+TGG | + | chr3.4:19108718-19108737 | None:intergenic | 40.0% |
| ! | AGTTCAGGCTTTGGTAATTC+GGG | + | chr3.4:19107860-19107879 | None:intergenic | 40.0% |
| ! | CTGCTCTAGTTTAGGTAACT+CGG | + | chr3.4:19108611-19108630 | None:intergenic | 40.0% |
| ! | TCAGGTACCTTTGGAAAATC+TGG | + | chr3.4:19107737-19107756 | None:intergenic | 40.0% |
| ! | TGCTCTAGTTTAGGTAACTC+GGG | + | chr3.4:19108610-19108629 | None:intergenic | 40.0% |
| ! | TTTGGAGTTTCTCGGACTTT+AGG | + | chr3.4:19108733-19108752 | None:intergenic | 40.0% |
| !! | AAAGAAGGTTTTGGTAGAGG+TGG | + | chr3.4:19107698-19107717 | None:intergenic | 40.0% |
| !! | AGTTCAGGTTTTGGCAATTC+AGG | + | chr3.4:19107899-19107918 | None:intergenic | 40.0% |
| !! | ATCTCGGGTTTTGTCAATTC+AGG | + | chr3.4:19108643-19108662 | None:intergenic | 40.0% |
| !! | CTCTGGTATTTTGGGAATCT+CGG | + | chr3.4:19108659-19108678 | None:intergenic | 40.0% |
| !! | GGTGGAAAATCAAGTTTTGG+AGG | + | chr3.4:19107680-19107699 | None:intergenic | 40.0% |
| !! | GTTTTAGGCAATTGTGGCTT+AGG | + | chr3.4:19108487-19108506 | None:intergenic | 40.0% |
| !! | TCAGCGATTTTAGGTAGTTC+AGG | + | chr3.4:19107914-19107933 | None:intergenic | 40.0% |
| !! | TCAGGGATTTTAGGTAGTTC+GGG | + | chr3.4:19108052-19108071 | None:intergenic | 40.0% |
| !! | TCTGGTATTTTGGGAATCTC+GGG | + | chr3.4:19108658-19108677 | None:intergenic | 40.0% |
| !!! | AGCTCAGGTTTTGGAAATTC+AGG | + | chr3.4:19108709-19108728 | None:intergenic | 40.0% |
| !!! | GAACGACTTTTGGAGTTTCT+CGG | + | chr3.4:19108741-19108760 | None:intergenic | 40.0% |
| !!! | TCAGGAGTTTTAGGCAATTG+TGG | + | chr3.4:19108493-19108512 | None:intergenic | 40.0% |
| AACTTAGGCAGTTCAGGCTT+TGG | + | chr3.4:19108007-19108026 | None:intergenic | 45.0% | |
| AACTTGGGTAGTTCAGGCTT+TGG | + | chr3.4:19107869-19107888 | None:intergenic | 45.0% | |
| ACATCCGACTTAGGGAATTC+AGG | + | chr3.4:19108346-19108365 | None:intergenic | 45.0% | |
| ACCTAAACTAGAGCAGCCTA+AGG | - | chr3.4:19108615-19108634 | MS.gene93589:CDS | 45.0% | |
| ACCTTAGGAACATCCGACTT+AGG | + | chr3.4:19108355-19108374 | None:intergenic | 45.0% | |
| ACGCTAAACTTGGGTAGTTC+AGG | + | chr3.4:19107875-19107894 | None:intergenic | 45.0% | |
| ATCCGACTTAGGGAATTCAG+GGG | + | chr3.4:19108344-19108363 | None:intergenic | 45.0% | |
| ATCCTAGGCAACTCAGGTTT+AGG | + | chr3.4:19108553-19108572 | None:intergenic | 45.0% | |
| CATCCGACTTAGGGAATTCA+GGG | + | chr3.4:19108345-19108364 | None:intergenic | 45.0% | |
| CCTTAGGAACATCCGACTTA+GGG | + | chr3.4:19108354-19108373 | None:intergenic | 45.0% | |
| TACCTAAACCTGAGTTGCCT+AGG | - | chr3.4:19108548-19108567 | MS.gene93589:CDS | 45.0% | |
| TAGGTAACTCGGGGACTTTA+GGG | + | chr3.4:19108600-19108619 | None:intergenic | 45.0% | |
| TAGTAACACAAGGGTTGTCG+GGG | - | chr3.4:19107622-19107641 | MS.gene93589:CDS | 45.0% | |
| TCAGAAACCTTAGATAGCCC+TGG | + | chr3.4:19108427-19108446 | None:intergenic | 45.0% | |
| TCAGGAACTTTAGGCAACTC+AGG | + | chr3.4:19108526-19108545 | None:intergenic | 45.0% | |
| TTAGGGAATTCAGGGGCTTT+AGG | + | chr3.4:19108337-19108356 | None:intergenic | 45.0% | |
| TTAGGTAACTCGGGGACTTT+AGG | + | chr3.4:19108601-19108620 | None:intergenic | 45.0% | |
| ! | ACCTTAGGCTGCTCTAGTTT+AGG | + | chr3.4:19108619-19108638 | None:intergenic | 45.0% |
| ! | AGTTCAGGCTTTGGCATTTC+AGG | + | chr3.4:19107998-19108017 | None:intergenic | 45.0% |
| ! | GCTCTAGCTTAGGTGATTCA+GGG | + | chr3.4:19107931-19107950 | None:intergenic | 45.0% |
| ! | GCTCTAGTTTAGGTAACTCG+GGG | + | chr3.4:19108609-19108628 | None:intergenic | 45.0% |
| ! | TGCTCTAGCTTAGGTGATTC+AGG | + | chr3.4:19107932-19107951 | None:intergenic | 45.0% |
| ! | TTTGGTAATTCGGGCCCTTT+AGG | + | chr3.4:19107851-19107870 | None:intergenic | 45.0% |
| !! | AAATCGGGTTTTGGCAACTC+AGG | + | chr3.4:19107794-19107813 | None:intergenic | 45.0% |
| !! | AGTTCGGGTTTTGGCAATTC+AGG | + | chr3.4:19108037-19108056 | None:intergenic | 45.0% |
| !!! | AGCTCGTGTTTTGGAAGTTC+AGG | + | chr3.4:19108379-19108398 | None:intergenic | 45.0% |
| !!! | GCTTTAGGAAGCTCGTGTTT+TGG | + | chr3.4:19108388-19108407 | None:intergenic | 45.0% |
| ACCTAAGCTAGAGCAGCCTA+AGG | - | chr3.4:19107937-19107956 | MS.gene93589:CDS | 50.0% | |
| ACCTGAACCAGGGCTATCTA+AGG | - | chr3.4:19108417-19108436 | MS.gene93589:CDS | 50.0% | |
| ACCTTAGATAGCCCTGGTTC+AGG | + | chr3.4:19108421-19108440 | None:intergenic | 50.0% | |
| AGCCCCTGAATTCCCTAAGT+CGG | - | chr3.4:19108339-19108358 | MS.gene93589:CDS | 50.0% | |
| CCCTAAGTCGGATGTTCCTA+AGG | - | chr3.4:19108351-19108370 | MS.gene93589:CDS | 50.0% | |
| TAGCCCTGGTTCAGGTAACT+CGG | + | chr3.4:19108413-19108432 | None:intergenic | 50.0% | |
| TCGGAAATCCTAGGCAACTC+AGG | + | chr3.4:19108559-19108578 | None:intergenic | 50.0% | |
| TCTCGGACTTTAGGTAGCTC+AGG | + | chr3.4:19108724-19108743 | None:intergenic | 50.0% | |
| ! | ACCTTAGGCTGCTCTAGCTT+AGG | + | chr3.4:19107941-19107960 | None:intergenic | 50.0% |
| ! | GTGGTGGTTGGAACGACTTT+TGG | + | chr3.4:19108751-19108770 | None:intergenic | 50.0% |
| ! | TCGGGGACTTTAGGGAGTTT+GGG | + | chr3.4:19108592-19108611 | None:intergenic | 50.0% |
| !! | GCTTTAGGAAGCTCGGGTTT+CGG | + | chr3.4:19108322-19108341 | None:intergenic | 50.0% |
| !! | TTCAGGGGCTTTAGGAAGCT+CGG | + | chr3.4:19108329-19108348 | None:intergenic | 50.0% |
| AGCCCTGGTTCAGGTAACTC+GGG | + | chr3.4:19108412-19108431 | None:intergenic | 55.0% | |
| TCAGGTAACTCGGGGGCTTT+AGG | + | chr3.4:19108403-19108422 | None:intergenic | 55.0% | |
| ! | CTCGGGGACTTTAGGGAGTT+TGG | + | chr3.4:19108593-19108612 | None:intergenic | 55.0% |
| !! | TCAGGGGCTTTAGGAAGCTC+GGG | + | chr3.4:19108328-19108347 | None:intergenic | 55.0% |
| AGCTCGGGTTTCGGCAGTTC+AGG | + | chr3.4:19108313-19108332 | None:intergenic | 60.0% | |
| CCCCCGAGTTACCTGAACCA+GGG | - | chr3.4:19108407-19108426 | MS.gene93589:CDS | 60.0% | |
| CCCTGGTTCAGGTAACTCGG+GGG | + | chr3.4:19108410-19108429 | None:intergenic | 60.0% | |
| GCCCTGGTTCAGGTAACTCG+GGG | + | chr3.4:19108411-19108430 | None:intergenic | 60.0% | |
| GCCCCCGAGTTACCTGAACC+AGG | - | chr3.4:19108406-19108425 | MS.gene93589:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 19107554 | 19108777 | 19107554 | ID=MS.gene93589 |
| chr3.4 | mRNA | 19107554 | 19108777 | 19107554 | ID=MS.gene93589.t1;Parent=MS.gene93589 |
| chr3.4 | exon | 19107554 | 19108777 | 19107554 | ID=MS.gene93589.t1.exon1;Parent=MS.gene93589.t1 |
| chr3.4 | CDS | 19107554 | 19108777 | 19107554 | ID=cds.MS.gene93589.t1;Parent=MS.gene93589.t1 |
| Gene Sequence |
| Protein sequence |
