Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93653.t1 | RHN46385.1 | 82.8 | 500 | 49 | 4 | 2 | 469 | 261 | 755 | 9.50E-207 | 729.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93653.t1 | Q41008 | 48.0 | 633 | 146 | 11 | 2 | 469 | 261 | 875 | 3.5e-125 | 449.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93653.t1 | A0A396H5E3 | 82.8 | 500 | 49 | 4 | 2 | 469 | 261 | 755 | 6.8e-207 | 729.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene93653 | 0.805871 | 1.08E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene93653 | 0.838716 | 2.44E-57 | -1.69E-46 |
| MS.gene053565 | MS.gene93653 | 0.801147 | 1.03E-48 | -1.69E-46 |
| MS.gene055357 | MS.gene93653 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene93653 | 0.819211 | 1.31E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene93653 | 0.814371 | 1.59E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene93653 | 0.812032 | 5.20E-51 | -1.69E-46 |
| MS.gene060480 | MS.gene93653 | 0.833764 | 4.42E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93653.t1 | MTR_7g066870 | 61.160 | 569 | 108 | 11 | 2 | 469 | 304 | 860 | 0.0 | 587 |
| MS.gene93653.t1 | MTR_7g066870 | 63.215 | 367 | 69 | 4 | 2 | 344 | 261 | 585 | 9.08e-131 | 390 |
| MS.gene93653.t1 | MTR_7g066870 | 83.582 | 67 | 11 | 0 | 136 | 202 | 520 | 586 | 1.09e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93653.t1 | AT2G38040 | 49.789 | 474 | 187 | 9 | 2 | 437 | 266 | 726 | 4.50e-136 | 410 |
| MS.gene93653.t1 | AT2G38040 | 49.789 | 474 | 187 | 9 | 2 | 437 | 266 | 726 | 4.50e-136 | 410 |
Find 91 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTCTTTGATTCCGAATT+TGG | 0.097093 | 7.1:-34828513 | None:intergenic |
| CCAGTTATTTCTATAGTTAT+TGG | 0.269049 | 7.1:+34826272 | MS.gene93653:CDS |
| CAGTTATTTCTATAGTTATT+GGG | 0.280842 | 7.1:+34826273 | MS.gene93653:CDS |
| ACTAAACAAGGATGTGAAAA+AGG | 0.281837 | 7.1:+34828404 | MS.gene93653:CDS |
| CGCATCCTCAGCAAGCGATT+TGG | 0.311917 | 7.1:+34828236 | MS.gene93653:CDS |
| CCCTTCAGCAATGGATCAAT+AGG | 0.337322 | 7.1:-34827970 | None:intergenic |
| CCCCAGAGGTTTCAGACATC+AGG | 0.360996 | 7.1:-34828617 | None:intergenic |
| AAAGAAACTGGAAGAGAAAC+TGG | 0.369228 | 7.1:+34827840 | MS.gene93653:CDS |
| TTCTTCAGCTTGTTAGCATT+AGG | 0.371644 | 7.1:-34828042 | None:intergenic |
| ATTTGGTGTCCCTCCAGCTT+TGG | 0.385342 | 7.1:-34828496 | None:intergenic |
| GTCAGTGGCCGCTAAAGCCC+TGG | 0.388943 | 7.1:+34827885 | MS.gene93653:CDS |
| CCAATAACTATAGAAATAAC+TGG | 0.397560 | 7.1:-34826272 | None:intergenic |
| CATAATTTGAGATCCATGTT+TGG | 0.415282 | 7.1:+34826239 | MS.gene93653:CDS |
| AGATGAGGCGATAAAGAAAC+TGG | 0.418414 | 7.1:+34827828 | MS.gene93653:CDS |
| AGCTGGAGGGACACCAAATT+CGG | 0.428121 | 7.1:+34828500 | MS.gene93653:CDS |
| GTTATTGGGGAAGGTGGATC+TGG | 0.432236 | 7.1:+34826287 | MS.gene93653:CDS |
| CCTCCTTGTTTCTGTCTGAC+AGG | 0.436937 | 7.1:-34828107 | None:intergenic |
| AAAGTGGAGGTCGCCAAAGC+TGG | 0.442807 | 7.1:+34828483 | MS.gene93653:CDS |
| TCTGGTGGTGCCCTTGCCAT+TGG | 0.444951 | 7.1:+34826305 | MS.gene93653:CDS |
| AAGATTGCAGCACACGCCTC+TGG | 0.445070 | 7.1:-34826986 | None:intergenic |
| GCCTCATCTAAATCGAGTTT+CGG | 0.448664 | 7.1:-34827814 | None:intergenic |
| ACCTGATGTCTGAAACCTCT+GGG | 0.457541 | 7.1:+34828616 | MS.gene93653:CDS |
| ATCTGTTGAGAGGTCCAACT+TGG | 0.458156 | 7.1:-34827455 | None:intergenic |
| AACTCGTTGCCATCTCGTCC+TGG | 0.464998 | 7.1:-34828360 | None:intergenic |
| GTTGAACTCACATTAAGAAA+AGG | 0.472332 | 7.1:-34828709 | None:intergenic |
| TGTTAAGCCCAGGGCTTTAG+CGG | 0.479055 | 7.1:-34827893 | None:intergenic |
| AACCTGATGTCTGAAACCTC+TGG | 0.484029 | 7.1:+34828615 | MS.gene93653:CDS |
| AATGATGGAGCAATTGAAAG+TGG | 0.495125 | 7.1:+34828467 | MS.gene93653:CDS |
| GGAAGTTTGAAAGTAGGAAA+TGG | 0.497527 | 7.1:+34828642 | MS.gene93653:CDS |
| CAGAGCCTTGCAGAGGCCGT+AGG | 0.500417 | 7.1:+34828564 | MS.gene93653:CDS |
| AATTAAAATCAATGAAGCTA+TGG | 0.503820 | 7.1:+34827481 | MS.gene93653:CDS |
| AATCAATGAGTTCAATAAAG+AGG | 0.504004 | 7.1:+34828278 | MS.gene93653:CDS |
| TCTATAGTTATTGGGGAAGG+TGG | 0.505891 | 7.1:+34826281 | MS.gene93653:CDS |
| GCTAATGTTGTGAAGTCGGT+CGG | 0.507927 | 7.1:+34828315 | MS.gene93653:CDS |
| GAGATCCATGTTTGGTCTGA+AGG | 0.512636 | 7.1:+34826247 | MS.gene93653:CDS |
| ACCTATTGATCCATTGCTGA+AGG | 0.534858 | 7.1:+34827969 | MS.gene93653:CDS |
| AACAGATATTAAGAGAATGA+TGG | 0.535873 | 7.1:+34828452 | MS.gene93653:CDS |
| TCTATCTTACCCTTCAGCAA+TGG | 0.536921 | 7.1:-34827979 | None:intergenic |
| TCAGTGGCCGCTAAAGCCCT+GGG | 0.537618 | 7.1:+34827886 | MS.gene93653:CDS |
| CTAATGTTGTGAAGTCGGTC+GGG | 0.541128 | 7.1:+34828316 | MS.gene93653:CDS |
| ACAAACTTTCTGTTAAGCCC+AGG | 0.544374 | 7.1:-34827903 | None:intergenic |
| TGGCACCTTCAGACCAAACA+TGG | 0.545741 | 7.1:-34826252 | None:intergenic |
| ATCAGCATGTGCACCACCGA+GGG | 0.548379 | 7.1:-34827432 | None:intergenic |
| ATGTCTGAAACCTCTGGGGA+TGG | 0.551656 | 7.1:+34828621 | MS.gene93653:CDS |
| CAAACTTTCTGTTAAGCCCA+GGG | 0.557108 | 7.1:-34827902 | None:intergenic |
| ATTGGGGAAGGTGGATCTGG+TGG | 0.559129 | 7.1:+34826290 | MS.gene93653:CDS |
| ATTTCTATAGTTATTGGGGA+AGG | 0.562173 | 7.1:+34826278 | MS.gene93653:CDS |
| ACTGGAAGAGAAACTGGAAA+AGG | 0.562500 | 7.1:+34827846 | MS.gene93653:CDS |
| GGGGATGGAAGTTTGAAAGT+AGG | 0.564045 | 7.1:+34828636 | MS.gene93653:CDS |
| TTTCTCTCTCAACTCGTCAT+CGG | 0.564143 | 7.1:-34828670 | None:intergenic |
| TATTAGCGCATCCAATGGCA+AGG | 0.566745 | 7.1:-34826316 | None:intergenic |
| CTGAGGATGCGCTAACACGC+TGG | 0.568228 | 7.1:-34828224 | None:intergenic |
| AGTTATTTCTATAGTTATTG+GGG | 0.571294 | 7.1:+34826274 | MS.gene93653:CDS |
| CAGTTGCTGCGTAAGTGTTG+TGG | 0.571821 | 7.1:-34828130 | None:intergenic |
| GAGTTCTAAAGCTGCTCCCA+AGG | 0.573415 | 7.1:+34827015 | MS.gene93653:CDS |
| ATGCAGTGTTCTATGTTGCC+AGG | 0.573587 | 7.1:+34826357 | MS.gene93653:CDS |
| GTGGAGGTCGCCAAAGCTGG+AGG | 0.581724 | 7.1:+34828486 | MS.gene93653:CDS |
| TTAGTAAAACCAGGACGAGA+TGG | 0.587670 | 7.1:+34828351 | MS.gene93653:CDS |
| TCAGCAATGGATCAATAGGT+TGG | 0.591042 | 7.1:-34827966 | None:intergenic |
| AGGCGTGTGCTGCAATCTTG+TGG | 0.591336 | 7.1:+34826990 | MS.gene93653:CDS |
| GACGAGTTGAGAGAGAAAGT+TGG | 0.597575 | 7.1:+34828675 | MS.gene93653:CDS |
| TTTCAAACTAGAAGAGCCTA+CGG | 0.606963 | 7.1:-34828580 | None:intergenic |
| AAAATCGGTGGGTTCAAGGA+AGG | 0.607904 | 7.1:+34827658 | MS.gene93653:CDS |
| TAATTTATTAGCGCATCCAA+TGG | 0.611684 | 7.1:-34826321 | None:intergenic |
| ATCATCCAAATCGCTTGCTG+AGG | 0.612600 | 7.1:-34828241 | None:intergenic |
| CCTATTGATCCATTGCTGAA+GGG | 0.615117 | 7.1:+34827970 | MS.gene93653:CDS |
| GATCGACTTTCATGTATGCA+GGG | 0.615808 | 7.1:+34826203 | None:intergenic |
| AACAAGCTGAAGAAGAAGCA+TGG | 0.618458 | 7.1:+34828051 | MS.gene93653:CDS |
| TGGAGGTCGCCAAAGCTGGA+GGG | 0.627204 | 7.1:+34828487 | MS.gene93653:CDS |
| GATGGCTAATGTTGTGAAGT+CGG | 0.628322 | 7.1:+34828311 | MS.gene93653:CDS |
| GTGCACATGCTGATCCAAGT+TGG | 0.629050 | 7.1:+34827441 | MS.gene93653:CDS |
| GATGTTCAGTTAGTAAAACC+AGG | 0.630796 | 7.1:+34828342 | MS.gene93653:CDS |
| TTCCAATAGGAGCCCCTCGG+TGG | 0.630832 | 7.1:+34827419 | MS.gene93653:intron |
| ATTAGCGCATCCAATGGCAA+GGG | 0.632392 | 7.1:-34826315 | None:intergenic |
| AAGAGCCTACGGCCTCTGCA+AGG | 0.633658 | 7.1:-34828569 | None:intergenic |
| GGAAGAGAAACTGGAAAAGG+AGG | 0.638755 | 7.1:+34827849 | MS.gene93653:CDS |
| TAAAGAGGTAGACTTGCAGA+TGG | 0.640435 | 7.1:+34828293 | MS.gene93653:CDS |
| TCTCCTGTCAGACAGAAACA+AGG | 0.645421 | 7.1:+34828104 | MS.gene93653:CDS |
| TCATCTAAATCGAGTTTCGG+AGG | 0.646059 | 7.1:-34827811 | None:intergenic |
| TATTACGTGATTTAGTCCAG+AGG | 0.647057 | 7.1:+34826970 | MS.gene93653:intron |
| TCCGAAACTCGATTTAGATG+AGG | 0.652577 | 7.1:+34827813 | MS.gene93653:CDS |
| GAGTTTCGGAGGCTCAGAAG+AGG | 0.652851 | 7.1:-34827800 | None:intergenic |
| AATAAAGCAGAGCCTTGCAG+AGG | 0.662404 | 7.1:+34828557 | MS.gene93653:CDS |
| GATCAGCATGTGCACCACCG+AGG | 0.670304 | 7.1:-34827433 | None:intergenic |
| TCAGATAGAAGAACTAAACA+AGG | 0.675606 | 7.1:+34828392 | MS.gene93653:CDS |
| TCAGCATGTGCACCACCGAG+GGG | 0.685493 | 7.1:-34827431 | None:intergenic |
| TTTCAAACTTCCATCCCCAG+AGG | 0.689826 | 7.1:-34828631 | None:intergenic |
| GGTTGATCAAGAATTGTCAG+TGG | 0.698128 | 7.1:+34827870 | MS.gene93653:CDS |
| GATGGAGCAATTGAAAGTGG+AGG | 0.703918 | 7.1:+34828470 | MS.gene93653:CDS |
| CCTGATGTCTGAAACCTCTG+GGG | 0.731070 | 7.1:+34828617 | MS.gene93653:CDS |
| CCTGTCAGACAGAAACAAGG+AGG | 0.745350 | 7.1:+34828107 | MS.gene93653:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATAAGATTATTAC+AGG | - | chr7.1:34827190-34827209 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTCCAAT+AGG | + | chr7.1:34827406-34827425 | MS.gene93653:intron | 10.0% |
| !! | ATATATATGTATATATACCT+TGG | - | chr7.1:34827035-34827054 | None:intergenic | 15.0% |
| !! | ATTATAAAACTTGAAAATGA+TGG | - | chr7.1:34826400-34826419 | None:intergenic | 15.0% |
| !! | TACATACGAAAAAAAAATTA+CGG | - | chr7.1:34827222-34827241 | None:intergenic | 15.0% |
| !! | TATACATATATATACAAAAC+TGG | + | chr7.1:34827042-34827061 | MS.gene93653:intron | 15.0% |
| !! | TATATATGTATATATACCTT+GGG | - | chr7.1:34827034-34827053 | None:intergenic | 15.0% |
| !! | TGATAATTTATATCAAACTT+TGG | + | chr7.1:34827562-34827581 | MS.gene93653:intron | 15.0% |
| !!! | ATTATTTATTTTATCTTTGC+AGG | + | chr7.1:34827099-34827118 | MS.gene93653:intron | 15.0% |
| !! | AATTAAAATCAATGAAGCTA+TGG | + | chr7.1:34827481-34827500 | MS.gene93653:CDS | 20.0% |
| !! | ACATACGAAAAAAAAATTAC+GGG | - | chr7.1:34827221-34827240 | None:intergenic | 20.0% |
| !! | CTAAATCACGTAATAAATAA+AGG | - | chr7.1:34826965-34826984 | None:intergenic | 20.0% |
| !! | TAGAATAAAGAAAAACTATG+AGG | + | chr7.1:34828185-34828204 | MS.gene93653:CDS | 20.0% |
| !!! | ACAAAACTACGAAATTTTTT+GGG | - | chr7.1:34826700-34826719 | None:intergenic | 20.0% |
| !!! | AGTTATTTCTATAGTTATTG+GGG | + | chr7.1:34826274-34826293 | MS.gene93653:CDS | 20.0% |
| !!! | CAGTTATTTCTATAGTTATT+GGG | + | chr7.1:34826273-34826292 | MS.gene93653:CDS | 20.0% |
| !!! | TAAACCTTTTAATGTCTATT+TGG | + | chr7.1:34827265-34827284 | MS.gene93653:intron | 20.0% |
| !!! | TACAAAACTACGAAATTTTT+TGG | - | chr7.1:34826701-34826720 | None:intergenic | 20.0% |
| !!! | TCATAGTTTTTCTTTATTCT+AGG | - | chr7.1:34828186-34828205 | None:intergenic | 20.0% |
| !!! | TCCATTTTCTCAAAATTTTA+CGG | + | chr7.1:34826627-34826646 | MS.gene93653:intron | 20.0% |
| !!! | TTCATGTTTCTTTTTTTCTT+GGG | - | chr7.1:34827697-34827716 | None:intergenic | 20.0% |
| !!! | TTTAATTTTTATCTGTTGAG+AGG | - | chr7.1:34827468-34827487 | None:intergenic | 20.0% |
| ! | AAAAAAGAAACATGAAGAAG+AGG | + | chr7.1:34827701-34827720 | MS.gene93653:CDS | 25.0% |
| ! | AAAAAGAAACATGAAGAAGA+GGG | + | chr7.1:34827702-34827721 | MS.gene93653:CDS | 25.0% |
| ! | AAAGGTTTAAACCATTAAGA+TGG | - | chr7.1:34827254-34827273 | None:intergenic | 25.0% |
| ! | AACAGATATTAAGAGAATGA+TGG | + | chr7.1:34828452-34828471 | MS.gene93653:CDS | 25.0% |
| ! | AACTCCAAATAGACATTAAA+AGG | - | chr7.1:34827272-34827291 | None:intergenic | 25.0% |
| ! | AATCAATGAGTTCAATAAAG+AGG | + | chr7.1:34828278-34828297 | MS.gene93653:CDS | 25.0% |
| ! | AGTTAATAATGTGCTTATGA+TGG | + | chr7.1:34826794-34826813 | MS.gene93653:intron | 25.0% |
| ! | ATTTAATACGCAGATAAGAT+AGG | + | chr7.1:34826869-34826888 | MS.gene93653:intron | 25.0% |
| ! | CCAATAACTATAGAAATAAC+TGG | - | chr7.1:34826275-34826294 | None:intergenic | 25.0% |
| ! | GAGTTAAAAATTAAATCACC+TGG | - | chr7.1:34826378-34826397 | None:intergenic | 25.0% |
| !! | ATTTTTCCTCGTTTACTAAT+TGG | + | chr7.1:34826908-34826927 | MS.gene93653:intron | 25.0% |
| !! | GAAAAAGGAAATTGAAGTTT+TGG | + | chr7.1:34828419-34828438 | MS.gene93653:CDS | 25.0% |
| !! | TTTTCTCTGCAAATTATATG+TGG | + | chr7.1:34826514-34826533 | MS.gene93653:intron | 25.0% |
| !! | TTTTTCCTCGTTTACTAATT+GGG | + | chr7.1:34826909-34826928 | MS.gene93653:intron | 25.0% |
| !!! | ACCGTAAAATTTTGAGAAAA+TGG | - | chr7.1:34826631-34826650 | None:intergenic | 25.0% |
| !!! | CCAGTTATTTCTATAGTTAT+TGG | + | chr7.1:34826272-34826291 | MS.gene93653:CDS | 25.0% |
| !!! | CTTCATGTTTCTTTTTTTCT+TGG | - | chr7.1:34827698-34827717 | None:intergenic | 25.0% |
| AACTTGAAAAATGGTAACAC+GGG | - | chr7.1:34827312-34827331 | None:intergenic | 30.0% | |
| ACTAAACAAGGATGTGAAAA+AGG | + | chr7.1:34828404-34828423 | MS.gene93653:CDS | 30.0% | |
| ATGCATAAGTTCCGAAAAAT+CGG | + | chr7.1:34827643-34827662 | MS.gene93653:CDS | 30.0% | |
| ATTAACCCAATTAGTAAACG+AGG | - | chr7.1:34826917-34826936 | None:intergenic | 30.0% | |
| ATTCATCTAACATGCACTAT+TGG | - | chr7.1:34826469-34826488 | None:intergenic | 30.0% | |
| ATTTCTATAGTTATTGGGGA+AGG | + | chr7.1:34826278-34826297 | MS.gene93653:CDS | 30.0% | |
| CAAAGGATCAACTTGAAAAA+TGG | - | chr7.1:34827321-34827340 | None:intergenic | 30.0% | |
| CAACTTGAAAAATGGTAACA+CGG | - | chr7.1:34827313-34827332 | None:intergenic | 30.0% | |
| CTATTCTTTGATTCCGAATT+TGG | - | chr7.1:34828516-34828535 | None:intergenic | 30.0% | |
| GGGTAAGATAGAAAAACTAA+AGG | + | chr7.1:34827990-34828009 | MS.gene93653:CDS | 30.0% | |
| TAATTTATTAGCGCATCCAA+TGG | - | chr7.1:34826324-34826343 | None:intergenic | 30.0% | |
| TATGAACTATGCCATCTTAA+TGG | + | chr7.1:34827240-34827259 | MS.gene93653:intron | 30.0% | |
| TCAGATAGAAGAACTAAACA+AGG | + | chr7.1:34828392-34828411 | MS.gene93653:CDS | 30.0% | |
| ! | CATAATTTGAGATCCATGTT+TGG | + | chr7.1:34826239-34826258 | MS.gene93653:CDS | 30.0% |
| ! | GCTTATGATGGAATTCAATT+TGG | + | chr7.1:34826806-34826825 | MS.gene93653:intron | 30.0% |
| ! | TCAGAATCAGAAATTTTCTC+AGG | - | chr7.1:34827736-34827755 | None:intergenic | 30.0% |
| !! | AATCGTACAAAAAGCATCTT+AGG | + | chr7.1:34826842-34826861 | MS.gene93653:intron | 30.0% |
| !! | AATGTTCTGATTTGTTCTAC+TGG | + | chr7.1:34826934-34826953 | MS.gene93653:intron | 30.0% |
| !! | TAAAGGCAGATTTTAATCGA+AGG | + | chr7.1:34828007-34828026 | MS.gene93653:CDS | 30.0% |
| !! | TAAGATGCTTTTTGTACGAT+TGG | - | chr7.1:34826843-34826862 | None:intergenic | 30.0% |
| AAAGAAACTGGAAGAGAAAC+TGG | + | chr7.1:34827840-34827859 | MS.gene93653:CDS | 35.0% | |
| ACATCATTACAAAGAAGCTC+AGG | - | chr7.1:34826495-34826514 | None:intergenic | 35.0% | |
| ATAAGTTCCGAAAAATCGGT+GGG | + | chr7.1:34827647-34827666 | MS.gene93653:CDS | 35.0% | |
| ATCTAACATGCACTATTGGA+AGG | - | chr7.1:34826465-34826484 | None:intergenic | 35.0% | |
| CTCACTAGCAATCTTATATC+TGG | - | chr7.1:34826776-34826795 | None:intergenic | 35.0% | |
| GATGTTCAGTTAGTAAAACC+AGG | + | chr7.1:34828342-34828361 | MS.gene93653:CDS | 35.0% | |
| GGAAGTTTGAAAGTAGGAAA+TGG | + | chr7.1:34828642-34828661 | MS.gene93653:CDS | 35.0% | |
| TAAACGAGGAAAAATAACGC+AGG | - | chr7.1:34826903-34826922 | None:intergenic | 35.0% | |
| TATTACGTGATTTAGTCCAG+AGG | + | chr7.1:34826970-34826989 | MS.gene93653:intron | 35.0% | |
| TCTAACATGCACTATTGGAA+GGG | - | chr7.1:34826464-34826483 | None:intergenic | 35.0% | |
| TGCAAATTGAAAGTTGCAGA+TGG | + | chr7.1:34827157-34827176 | MS.gene93653:intron | 35.0% | |
| TTTCAAACTAGAAGAGCCTA+CGG | - | chr7.1:34828583-34828602 | None:intergenic | 35.0% | |
| ! | AATGATGGAGCAATTGAAAG+TGG | + | chr7.1:34828467-34828486 | MS.gene93653:CDS | 35.0% |
| ! | AGAAAAACTATGAGGCGTTA+CGG | + | chr7.1:34828193-34828212 | MS.gene93653:CDS | 35.0% |
| ! | GAATCAGAAATTTTCTCAGG+AGG | - | chr7.1:34827733-34827752 | None:intergenic | 35.0% |
| ! | GCTATGGATGTAAGTTTTAC+TGG | + | chr7.1:34827497-34827516 | MS.gene93653:intron | 35.0% |
| !! | TCTGATTTGTTCTACTGGTT+TGG | + | chr7.1:34826939-34826958 | MS.gene93653:intron | 35.0% |
| !! | TTCTTCAGCTTGTTAGCATT+AGG | - | chr7.1:34828045-34828064 | None:intergenic | 35.0% |
| !!! | CTTTTTTTCTTGGGATCTAC+AGG | - | chr7.1:34827688-34827707 | None:intergenic | 35.0% |
| !!! | TATGCATGCGATGTTTTAAC+AGG | - | chr7.1:34827630-34827649 | None:intergenic | 35.0% |
| AACAAGCTGAAGAAGAAGCA+TGG | + | chr7.1:34828051-34828070 | MS.gene93653:CDS | 40.0% | |
| ACAAACTTTCTGTTAAGCCC+AGG | - | chr7.1:34827906-34827925 | None:intergenic | 40.0% | |
| ACCTATTGATCCATTGCTGA+AGG | + | chr7.1:34827969-34827988 | MS.gene93653:CDS | 40.0% | |
| ACTGGAAGAGAAACTGGAAA+AGG | + | chr7.1:34827846-34827865 | MS.gene93653:CDS | 40.0% | |
| AGATGAGGCGATAAAGAAAC+TGG | + | chr7.1:34827828-34827847 | MS.gene93653:CDS | 40.0% | |
| CAAACTTTCTGTTAAGCCCA+GGG | - | chr7.1:34827905-34827924 | None:intergenic | 40.0% | |
| CATAAGTTCCGAAAAATCGG+TGG | + | chr7.1:34827646-34827665 | MS.gene93653:CDS | 40.0% | |
| CCTATTGATCCATTGCTGAA+GGG | + | chr7.1:34827970-34827989 | MS.gene93653:CDS | 40.0% | |
| GATGGCTAATGTTGTGAAGT+CGG | + | chr7.1:34828311-34828330 | MS.gene93653:CDS | 40.0% | |
| GCCTCATCTAAATCGAGTTT+CGG | - | chr7.1:34827817-34827836 | None:intergenic | 40.0% | |
| GGTTGATCAAGAATTGTCAG+TGG | + | chr7.1:34827870-34827889 | MS.gene93653:CDS | 40.0% | |
| TAAAGAGGTAGACTTGCAGA+TGG | + | chr7.1:34828293-34828312 | MS.gene93653:CDS | 40.0% | |
| TCAGCAATGGATCAATAGGT+TGG | - | chr7.1:34827969-34827988 | None:intergenic | 40.0% | |
| TCATCTAAATCGAGTTTCGG+AGG | - | chr7.1:34827814-34827833 | None:intergenic | 40.0% | |
| TCCGAAACTCGATTTAGATG+AGG | + | chr7.1:34827813-34827832 | MS.gene93653:CDS | 40.0% | |
| TCTATAGTTATTGGGGAAGG+TGG | + | chr7.1:34826281-34826300 | MS.gene93653:CDS | 40.0% | |
| TCTATCTTACCCTTCAGCAA+TGG | - | chr7.1:34827982-34828001 | None:intergenic | 40.0% | |
| TGAGTTCCTACACAATGAAC+AGG | - | chr7.1:34827588-34827607 | None:intergenic | 40.0% | |
| TGGAAGGGAAGACAAAAGAA+AGG | - | chr7.1:34826449-34826468 | None:intergenic | 40.0% | |
| TTAGTAAAACCAGGACGAGA+TGG | + | chr7.1:34828351-34828370 | MS.gene93653:CDS | 40.0% | |
| TTTCTCTCTCAACTCGTCAT+CGG | - | chr7.1:34828673-34828692 | None:intergenic | 40.0% | |
| AATAAAGCAGAGCCTTGCAG+AGG | + | chr7.1:34828557-34828576 | MS.gene93653:CDS | 45.0% | |
| ATCTGTTGAGAGGTCCAACT+TGG | - | chr7.1:34827458-34827477 | None:intergenic | 45.0% | |
| ATGCAGTGTTCTATGTTGCC+AGG | + | chr7.1:34826357-34826376 | MS.gene93653:CDS | 45.0% | |
| ATTAGCGCATCCAATGGCAA+GGG | - | chr7.1:34826318-34826337 | None:intergenic | 45.0% | |
| CCCTTCAGCAATGGATCAAT+AGG | - | chr7.1:34827973-34827992 | None:intergenic | 45.0% | |
| CTAATGTTGTGAAGTCGGTC+GGG | + | chr7.1:34828316-34828335 | MS.gene93653:CDS | 45.0% | |
| CTATCCTTTGCTGCATGCAA+AGG | - | chr7.1:34827338-34827357 | None:intergenic | 45.0% | |
| CTTTGGCCTGTTCATTGTGT+AGG | + | chr7.1:34827579-34827598 | MS.gene93653:intron | 45.0% | |
| GAGATCCATGTTTGGTCTGA+AGG | + | chr7.1:34826247-34826266 | MS.gene93653:CDS | 45.0% | |
| GATGGAGCAATTGAAAGTGG+AGG | + | chr7.1:34828470-34828489 | MS.gene93653:CDS | 45.0% | |
| GCTAATGTTGTGAAGTCGGT+CGG | + | chr7.1:34828315-34828334 | MS.gene93653:CDS | 45.0% | |
| GGAAGAGAAACTGGAAAAGG+AGG | + | chr7.1:34827849-34827868 | MS.gene93653:CDS | 45.0% | |
| GGGGATGGAAGTTTGAAAGT+AGG | + | chr7.1:34828636-34828655 | MS.gene93653:CDS | 45.0% | |
| TATTAGCGCATCCAATGGCA+AGG | - | chr7.1:34826319-34826338 | None:intergenic | 45.0% | |
| TCTCCTGTCAGACAGAAACA+AGG | + | chr7.1:34828104-34828123 | MS.gene93653:CDS | 45.0% | |
| TGATCCTTTGCATGCAGCAA+AGG | + | chr7.1:34827331-34827350 | MS.gene93653:intron | 45.0% | |
| TTTCAAACTTCCATCCCCAG+AGG | - | chr7.1:34828634-34828653 | None:intergenic | 45.0% | |
| ! | AAAATCGGTGGGTTCAAGGA+AGG | + | chr7.1:34827658-34827677 | MS.gene93653:CDS | 45.0% |
| ! | AACCTGATGTCTGAAACCTC+TGG | + | chr7.1:34828615-34828634 | MS.gene93653:CDS | 45.0% |
| ! | ACCTGATGTCTGAAACCTCT+GGG | + | chr7.1:34828616-34828635 | MS.gene93653:CDS | 45.0% |
| ! | ACGAGATGGCAACGAGTTTT+TGG | + | chr7.1:34828365-34828384 | MS.gene93653:CDS | 45.0% |
| ! | ACGCCATCAATCTGAAGTGT+CGG | - | chr7.1:34826554-34826573 | None:intergenic | 45.0% |
| ! | ATCATCCAAATCGCTTGCTG+AGG | - | chr7.1:34828244-34828263 | None:intergenic | 45.0% |
| ! | GACGAGTTGAGAGAGAAAGT+TGG | + | chr7.1:34828675-34828694 | MS.gene93653:CDS | 45.0% |
| ! | GTACCGACACTTCAGATTGA+TGG | + | chr7.1:34826548-34826567 | MS.gene93653:intron | 45.0% |
| ! | TTCGTGTCATTACCGACCAT+CGG | - | chr7.1:34826579-34826598 | None:intergenic | 45.0% |
| ! | TTTTTCCAATAGGAGCCCCT+CGG | + | chr7.1:34827416-34827435 | MS.gene93653:intron | 45.0% |
| !! | AAGTGTCGGTACTACAGAGT+TGG | - | chr7.1:34826540-34826559 | None:intergenic | 45.0% |
| !!! | CCTTGAACCCACCGATTTTT+CGG | - | chr7.1:34827657-34827676 | None:intergenic | 45.0% |
| AGCTGGAGGGACACCAAATT+CGG | + | chr7.1:34828500-34828519 | MS.gene93653:CDS | 50.0% | |
| AGTGTCTGTCCTTGCTTCGT+AGG | + | chr7.1:34826672-34826691 | MS.gene93653:intron | 50.0% | |
| CCTGTCAGACAGAAACAAGG+AGG | + | chr7.1:34828107-34828126 | MS.gene93653:CDS | 50.0% | |
| GTGCACATGCTGATCCAAGT+TGG | + | chr7.1:34827441-34827460 | MS.gene93653:CDS | 50.0% | |
| GTTATTGGGGAAGGTGGATC+TGG | + | chr7.1:34826287-34826306 | MS.gene93653:CDS | 50.0% | |
| TGGCACCTTCAGACCAAACA+TGG | - | chr7.1:34826255-34826274 | None:intergenic | 50.0% | |
| ! | ATGTCTGAAACCTCTGGGGA+TGG | + | chr7.1:34828621-34828640 | MS.gene93653:CDS | 50.0% |
| ! | CAGTTGCTGCGTAAGTGTTG+TGG | - | chr7.1:34828133-34828152 | None:intergenic | 50.0% |
| ! | CCGAAAAATCGGTGGGTTCA+AGG | + | chr7.1:34827654-34827673 | MS.gene93653:CDS | 50.0% |
| ! | CCTGATGTCTGAAACCTCTG+GGG | + | chr7.1:34828617-34828636 | MS.gene93653:CDS | 50.0% |
| ! | TGTTAAGCCCAGGGCTTTAG+CGG | - | chr7.1:34827896-34827915 | None:intergenic | 50.0% |
| ! | TTTTGGGCACCTACGAAGCA+AGG | - | chr7.1:34826684-34826703 | None:intergenic | 50.0% |
| !! | ATTTGGTGTCCCTCCAGCTT+TGG | - | chr7.1:34828499-34828518 | None:intergenic | 50.0% |
| !! | CCTCCTTGTTTCTGTCTGAC+AGG | - | chr7.1:34828110-34828129 | None:intergenic | 50.0% |
| !! | GAGTTCTAAAGCTGCTCCCA+AGG | + | chr7.1:34827015-34827034 | MS.gene93653:CDS | 50.0% |
| AAAGTGGAGGTCGCCAAAGC+TGG | + | chr7.1:34828483-34828502 | MS.gene93653:CDS | 55.0% | |
| AACTCGTTGCCATCTCGTCC+TGG | - | chr7.1:34828363-34828382 | None:intergenic | 55.0% | |
| AAGATTGCAGCACACGCCTC+TGG | - | chr7.1:34826989-34827008 | None:intergenic | 55.0% | |
| AGGCGTGTGCTGCAATCTTG+TGG | + | chr7.1:34826990-34827009 | MS.gene93653:CDS | 55.0% | |
| ATCAGCATGTGCACCACCGA+GGG | - | chr7.1:34827435-34827454 | None:intergenic | 55.0% | |
| ATTGGGGAAGGTGGATCTGG+TGG | + | chr7.1:34826290-34826309 | MS.gene93653:CDS | 55.0% | |
| CCCCAGAGGTTTCAGACATC+AGG | - | chr7.1:34828620-34828639 | None:intergenic | 55.0% | |
| CGCATCCTCAGCAAGCGATT+TGG | + | chr7.1:34828236-34828255 | MS.gene93653:CDS | 55.0% | |
| GAGTTTCGGAGGCTCAGAAG+AGG | - | chr7.1:34827803-34827822 | None:intergenic | 55.0% | |
| !! | CAGATTGATGGCGTGTCCGA+TGG | + | chr7.1:34826560-34826579 | MS.gene93653:intron | 55.0% |
| !! | TTGATGGCGTGTCCGATGGT+CGG | + | chr7.1:34826564-34826583 | MS.gene93653:intron | 55.0% |
| AAGAGCCTACGGCCTCTGCA+AGG | - | chr7.1:34828572-34828591 | None:intergenic | 60.0% | |
| CTGAGGATGCGCTAACACGC+TGG | - | chr7.1:34828227-34828246 | None:intergenic | 60.0% | |
| GATCAGCATGTGCACCACCG+AGG | - | chr7.1:34827436-34827455 | None:intergenic | 60.0% | |
| TCAGCATGTGCACCACCGAG+GGG | - | chr7.1:34827434-34827453 | None:intergenic | 60.0% | |
| TCAGTGGCCGCTAAAGCCCT+GGG | + | chr7.1:34827886-34827905 | MS.gene93653:CDS | 60.0% | |
| TGGAGGTCGCCAAAGCTGGA+GGG | + | chr7.1:34828487-34828506 | MS.gene93653:CDS | 60.0% | |
| TTCCAATAGGAGCCCCTCGG+TGG | + | chr7.1:34827419-34827438 | MS.gene93653:intron | 60.0% | |
| ! | TCTGGTGGTGCCCTTGCCAT+TGG | + | chr7.1:34826305-34826324 | MS.gene93653:CDS | 60.0% |
| CACCACCGAGGGGCTCCTAT+TGG | - | chr7.1:34827424-34827443 | None:intergenic | 65.0% | |
| CAGAGCCTTGCAGAGGCCGT+AGG | + | chr7.1:34828564-34828583 | MS.gene93653:CDS | 65.0% | |
| GTCAGTGGCCGCTAAAGCCC+TGG | + | chr7.1:34827885-34827904 | MS.gene93653:CDS | 65.0% | |
| GTGGAGGTCGCCAAAGCTGG+AGG | + | chr7.1:34828486-34828505 | MS.gene93653:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 34826218 | 34828719 | 34826218 | ID=MS.gene93653 |
| chr7.1 | mRNA | 34826218 | 34828719 | 34826218 | ID=MS.gene93653.t1;Parent=MS.gene93653 |
| chr7.1 | exon | 34826218 | 34826378 | 34826218 | ID=MS.gene93653.t1.exon1;Parent=MS.gene93653.t1 |
| chr7.1 | CDS | 34826218 | 34826378 | 34826218 | ID=cds.MS.gene93653.t1;Parent=MS.gene93653.t1 |
| chr7.1 | exon | 34826985 | 34827036 | 34826985 | ID=MS.gene93653.t1.exon2;Parent=MS.gene93653.t1 |
| chr7.1 | CDS | 34826985 | 34827036 | 34826985 | ID=cds.MS.gene93653.t1;Parent=MS.gene93653.t1 |
| chr7.1 | exon | 34827428 | 34827505 | 34827428 | ID=MS.gene93653.t1.exon3;Parent=MS.gene93653.t1 |
| chr7.1 | CDS | 34827428 | 34827505 | 34827428 | ID=cds.MS.gene93653.t1;Parent=MS.gene93653.t1 |
| chr7.1 | exon | 34827601 | 34828719 | 34827601 | ID=MS.gene93653.t1.exon4;Parent=MS.gene93653.t1 |
| chr7.1 | CDS | 34827601 | 34828719 | 34827601 | ID=cds.MS.gene93653.t1;Parent=MS.gene93653.t1 |
| Gene Sequence |
| Protein sequence |
