AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93807

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93807.t1 MTR_1g105885 94.841 252 13 0 1 252 1 252 0.0 499
MS.gene93807.t1 MTR_1g105860 72.266 256 65 4 1 251 18 272 1.60e-134 380
MS.gene93807.t1 MTR_1g105860 72.266 256 65 4 1 251 1 255 2.77e-134 379
MS.gene93807.t1 MTR_1g105855 67.925 265 69 6 1 251 18 280 1.42e-125 358
MS.gene93807.t1 MTR_1g021638 55.510 245 102 3 12 250 8 251 8.88e-91 271
MS.gene93807.t1 MTR_0341s0010 54.582 251 102 6 12 251 8 257 2.10e-89 267
MS.gene93807.t1 MTR_1g021632 55.645 248 103 4 10 251 7 253 6.76e-88 274
MS.gene93807.t1 MTR_1g021630 54.582 251 102 6 12 251 8 257 7.83e-86 269
MS.gene93807.t1 MTR_1g105850 54.978 231 102 2 23 252 30 259 9.63e-85 255
MS.gene93807.t1 MTR_1g021635 53.846 247 106 4 12 251 8 253 2.19e-83 262
MS.gene93807.t1 MTR_1g021610 52.846 246 107 4 13 251 10 253 1.41e-79 252
MS.gene93807.t1 MTR_1g105820 50.391 256 115 6 1 250 1 250 4.69e-77 246
MS.gene93807.t1 MTR_1g021642 51.172 256 113 5 1 246 8 261 2.77e-74 239
MS.gene93807.t1 MTR_1g105755 48.031 254 121 6 1 250 1 247 3.39e-71 229
MS.gene93807.t1 MTR_5g068260 49.180 244 116 4 10 251 8 245 4.02e-71 230
MS.gene93807.t1 MTR_1g105750 50.204 245 115 4 7 249 11 250 1.27e-66 218
MS.gene93807.t1 MTR_5g068250 48.246 228 112 3 24 251 29 250 3.07e-65 212
MS.gene93807.t1 MTR_1g105800 48.101 237 115 4 15 250 19 248 7.48e-61 202
MS.gene93807.t1 MTR_0341s0020 44.980 249 98 6 12 251 8 226 8.35e-61 202
MS.gene93807.t1 MTR_5g068190 43.725 247 126 5 10 250 8 247 3.10e-58 196
MS.gene93807.t1 MTR_1g105840 42.562 242 129 4 11 252 9 240 2.56e-55 188
MS.gene93807.t1 MTR_5g065130 41.564 243 128 5 14 252 10 242 1.79e-52 180
MS.gene93807.t1 MTR_1g105700 38.589 241 133 6 21 252 19 253 4.93e-46 163
MS.gene93807.t1 MTR_1g105710 39.189 222 121 6 39 252 33 248 3.66e-44 158
MS.gene93807.t1 MTR_1g105830 36.364 242 127 5 14 252 35 252 6.85e-43 147
MS.gene93807.t1 MTR_7g052020 31.818 242 156 4 9 250 5 237 3.15e-39 137
MS.gene93807.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 3.47e-35 132
MS.gene93807.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 3.70e-35 132
MS.gene93807.t1 MTR_1g105640 34.959 246 148 7 11 251 15 253 4.23e-35 132
MS.gene93807.t1 MTR_5g068290 50.400 125 60 2 127 251 1 123 2.20e-33 124
MS.gene93807.t1 MTR_6g463660 33.462 260 157 6 1 252 1 252 4.38e-33 125
MS.gene93807.t1 MTR_6g463660 31.863 204 127 6 50 250 296 490 6.65e-22 94.4
MS.gene93807.t1 MTR_6g057680 33.462 260 157 6 1 252 1 252 4.38e-33 125
MS.gene93807.t1 MTR_6g057680 31.863 204 127 6 50 250 296 490 6.65e-22 94.4
MS.gene93807.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 4.78e-33 122
MS.gene93807.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 2.98e-32 122
MS.gene93807.t1 MTR_2g088980 31.474 251 157 7 4 251 7 245 9.01e-32 117
MS.gene93807.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 1.11e-31 122
MS.gene93807.t1 MTR_1g104890 31.925 213 139 3 41 251 51 259 2.15e-31 122
MS.gene93807.t1 MTR_5g005480 32.636 239 152 6 16 250 16 249 1.75e-30 119
MS.gene93807.t1 MTR_6g463400 31.008 258 165 5 1 252 1 251 4.41e-30 117
MS.gene93807.t1 MTR_6g463400 32.068 237 140 8 20 251 271 491 4.96e-26 106
MS.gene93807.t1 MTR_5g005450 29.845 258 160 8 1 250 1 245 1.10e-28 114
MS.gene93807.t1 MTR_6g055960 29.572 257 164 7 1 252 1 245 1.98e-28 114
MS.gene93807.t1 MTR_6g055960 31.858 226 135 7 28 250 274 483 8.67e-23 97.4
MS.gene93807.t1 MTR_6g463830 32.271 251 154 8 11 252 9 252 4.22e-28 112
MS.gene93807.t1 MTR_6g463830 31.111 225 137 8 28 250 281 489 7.00e-18 83.2
MS.gene93807.t1 MTR_1g105650 32.381 210 136 3 45 251 48 254 2.02e-27 110
MS.gene93807.t1 MTR_1g105585 33.486 218 127 6 43 252 48 255 2.31e-27 110
MS.gene93807.t1 MTR_2g088930 29.921 254 161 7 1 251 6 245 2.39e-27 105
MS.gene93807.t1 MTR_5g005530 35.047 214 133 3 38 250 39 247 3.52e-27 110
MS.gene93807.t1 MTR_0007s0020 30.268 261 165 6 1 252 1 253 1.13e-26 108
MS.gene93807.t1 MTR_0007s0020 36.095 169 99 5 85 250 330 492 8.76e-20 88.6
MS.gene93807.t1 MTR_3g011890 29.832 238 151 6 18 251 20 245 1.24e-26 104
MS.gene93807.t1 MTR_1g105595 32.381 210 132 6 47 252 52 255 3.89e-26 107
MS.gene93807.t1 MTR_1g105595 32.381 210 132 6 47 252 52 255 4.50e-26 107
MS.gene93807.t1 MTR_8g028065 32.129 249 147 9 9 250 9 242 7.00e-26 106
MS.gene93807.t1 MTR_8g028065 28.634 227 141 8 32 251 276 488 1.70e-16 79.0
MS.gene93807.t1 MTR_6g057750 29.960 247 162 6 9 250 12 252 8.88e-25 103
MS.gene93807.t1 MTR_6g057750 26.295 251 158 8 14 251 266 502 4.97e-17 80.5
MS.gene93807.t1 MTR_6g463700 29.960 247 162 6 9 250 12 252 9.02e-25 103
MS.gene93807.t1 MTR_3g011910 31.301 246 152 8 11 250 24 258 6.16e-24 100
MS.gene93807.t1 MTR_3g011910 33.028 218 134 6 37 250 23 232 1.04e-23 100
MS.gene93807.t1 MTR_1g105655 31.651 218 138 6 37 250 43 253 1.18e-23 99.8
MS.gene93807.t1 MTR_6g463710 30.962 239 155 5 20 252 19 253 2.48e-23 99.0
MS.gene93807.t1 MTR_6g463710 32.353 238 143 8 19 250 266 491 5.04e-20 89.4
MS.gene93807.t1 MTR_8g041650 29.508 244 159 7 12 251 15 249 2.48e-23 99.0
MS.gene93807.t1 MTR_6g057770 30.962 239 155 5 20 252 19 253 2.50e-23 99.0
MS.gene93807.t1 MTR_6g057770 32.353 238 143 8 19 250 266 491 5.23e-20 89.4
MS.gene93807.t1 MTR_1g105725 27.451 255 166 8 9 252 23 269 3.79e-22 95.5
MS.gene93807.t1 MTR_5g005520 30.556 216 139 6 41 250 36 246 4.15e-22 95.1
MS.gene93807.t1 MTR_5g005520 30.556 216 139 6 41 250 41 251 7.22e-22 94.7
MS.gene93807.t1 MTR_1g105615 29.389 262 164 9 2 252 3 254 1.67e-21 93.2
MS.gene93807.t1 MTR_8g041710 27.869 244 160 7 11 251 13 243 1.68e-21 93.6
MS.gene93807.t1 MTR_6g053000 32.157 255 156 10 1 250 1 243 3.76e-21 92.4
MS.gene93807.t1 MTR_1g105600 31.754 211 129 7 47 250 307 509 2.50e-18 84.3
MS.gene93807.t1 MTR_1g105600 29.902 204 123 10 61 251 69 265 6.94e-13 68.6
MS.gene93807.t1 MTR_2g010730 24.400 250 173 4 9 250 5 246 2.60e-18 82.4
MS.gene93807.t1 MTR_0074s0060 27.757 263 145 7 1 250 1 231 7.51e-18 82.8
MS.gene93807.t1 MTR_8g041880 26.104 249 168 8 10 251 9 248 1.05e-17 82.4
MS.gene93807.t1 MTR_1g105715 56.897 58 25 0 61 118 4 61 5.43e-17 73.9
MS.gene93807.t1 MTR_8g041690 31.138 167 108 4 86 252 88 247 2.90e-16 78.2
MS.gene93807.t1 MTR_3g079850 30.288 208 117 8 64 251 63 262 1.19e-15 76.3
MS.gene93807.t1 MTR_3g079850 30.288 208 117 8 64 251 63 262 1.76e-15 75.9
MS.gene93807.t1 MTR_2g010710 27.027 185 125 4 67 250 66 241 2.32e-15 73.9
MS.gene93807.t1 MTR_8g041910 25.197 254 165 11 10 250 14 255 2.76e-15 75.5
MS.gene93807.t1 MTR_8g041870 26.667 180 118 6 76 250 77 247 1.16e-14 73.6
MS.gene93807.t1 MTR_0264s0030 33.526 173 106 6 83 250 76 244 1.99e-14 72.0
MS.gene93807.t1 MTR_3g415620 39.091 110 62 3 28 136 106 211 2.42e-13 67.4
MS.gene93807.t1 MTR_8g041660 23.585 212 149 6 45 251 44 247 3.29e-13 69.3
MS.gene93807.t1 MTR_8g041660 23.585 212 149 6 45 251 44 247 3.96e-13 68.9
MS.gene93807.t1 MTR_1g105720 50.909 55 27 0 61 115 9 63 2.35e-12 61.6
MS.gene93807.t1 MTR_8g041890 25.301 249 170 8 10 251 9 248 1.03e-11 64.7
MS.gene93807.t1 MTR_6g057440 31.507 146 86 6 11 149 9 147 4.23e-11 60.1
MS.gene93807.t1 MTR_2g010720 23.280 189 133 4 65 252 129 306 4.34e-11 62.4
MS.gene93807.t1 MTR_8g104990 23.077 208 147 5 38 244 32 227 5.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93807.t1 AT4G21410 38.073 218 128 4 37 251 38 251 8.31e-39 141
MS.gene93807.t1 AT4G21410 38.073 218 128 4 37 251 38 251 2.38e-38 142
MS.gene93807.t1 AT3G22060 33.473 239 152 4 15 252 19 251 6.26e-37 131
MS.gene93807.t1 AT4G38830 37.156 218 131 4 35 250 32 245 3.61e-36 135
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 3.19e-34 129
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 4.35e-34 129
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 4.35e-34 129
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 4.35e-34 129
MS.gene93807.t1 AT4G05200 35.060 251 148 8 5 250 26 266 6.03e-34 129
MS.gene93807.t1 AT4G05200 35.060 251 148 8 5 250 8 248 6.09e-34 129
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 8.02e-34 129
MS.gene93807.t1 AT4G21400 33.953 215 137 3 39 251 42 253 9.06e-34 129
MS.gene93807.t1 AT4G23220 32.243 214 144 1 39 251 29 242 1.39e-32 125
MS.gene93807.t1 AT4G23180 34.632 231 142 5 21 250 31 253 2.88e-32 123
MS.gene93807.t1 AT4G23180 34.632 231 142 5 21 250 31 253 4.29e-32 124
MS.gene93807.t1 AT4G23160 36.441 236 134 8 21 250 37 262 4.64e-32 124
MS.gene93807.t1 AT4G23160 36.441 236 134 8 21 250 617 842 5.70e-32 124
MS.gene93807.t1 AT4G23160 36.441 236 134 8 21 250 617 842 5.70e-32 124
MS.gene93807.t1 AT4G21230 36.986 219 119 7 37 250 37 241 5.81e-32 123
MS.gene93807.t1 AT4G23180 34.632 231 142 5 21 250 31 253 8.06e-32 123
MS.gene93807.t1 AT4G23170 35.443 237 135 9 21 250 20 245 1.51e-31 117
MS.gene93807.t1 AT4G23280 36.620 213 123 5 41 250 39 242 4.26e-31 121
MS.gene93807.t1 AT4G23280 36.620 213 123 5 41 250 39 242 4.86e-31 121
MS.gene93807.t1 AT4G23280 36.620 213 123 5 41 250 39 242 5.22e-31 121
MS.gene93807.t1 AT4G23200 31.308 214 142 2 41 249 30 243 7.61e-31 119
MS.gene93807.t1 AT4G23200 31.308 214 142 2 41 249 30 243 1.39e-30 119
MS.gene93807.t1 AT4G21400 34.184 196 122 3 60 251 35 227 4.59e-30 118
MS.gene93807.t1 AT4G00970 38.378 185 104 5 66 246 79 257 1.91e-29 116
MS.gene93807.t1 AT4G23150 36.449 214 125 7 41 250 39 245 2.10e-29 116
MS.gene93807.t1 AT4G00970 38.378 185 104 5 66 246 79 257 3.21e-29 115
MS.gene93807.t1 AT4G23130 34.762 210 126 6 45 251 44 245 5.25e-27 109
MS.gene93807.t1 AT4G23130 34.762 210 126 6 45 251 44 245 6.49e-27 109
MS.gene93807.t1 AT4G23130 34.762 210 126 6 45 251 44 245 8.21e-27 108
MS.gene93807.t1 AT4G23250 29.915 234 142 5 32 250 30 256 9.25e-27 108
MS.gene93807.t1 AT4G23250 29.915 234 142 5 32 250 30 256 9.40e-27 108
MS.gene93807.t1 AT4G23250 29.915 234 142 5 32 250 30 256 1.04e-26 108
MS.gene93807.t1 AT4G23250 26.471 204 125 4 47 250 741 919 6.87e-15 74.3
MS.gene93807.t1 AT4G23230 35.047 214 126 7 41 250 37 241 3.64e-26 107
MS.gene93807.t1 AT4G23140 34.359 195 114 6 61 250 61 246 4.13e-26 107
MS.gene93807.t1 AT4G23140 34.259 216 127 7 41 250 40 246 4.75e-26 107
MS.gene93807.t1 AT3G45860 35.185 216 123 6 41 250 43 247 3.07e-25 104
MS.gene93807.t1 AT4G11460 29.545 220 145 4 39 249 32 250 7.28e-25 103
MS.gene93807.t1 AT4G11460 29.545 220 145 4 39 249 32 250 7.58e-25 103
MS.gene93807.t1 AT4G20670 30.980 255 162 7 5 251 7 255 9.97e-25 99.4
MS.gene93807.t1 AT4G20640 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20580 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20610 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20630 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20620 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20590 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20600 30.980 255 162 7 5 251 7 255 1.00e-24 99.4
MS.gene93807.t1 AT4G20570 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G20560 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G20645 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G20550 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G20530 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G20540 30.980 255 162 7 5 251 21 269 1.24e-24 99.4
MS.gene93807.t1 AT4G23210 29.084 251 156 6 12 249 9 250 1.73e-24 102
MS.gene93807.t1 AT4G11530 27.727 220 147 3 39 249 30 246 2.30e-24 102
MS.gene93807.t1 AT4G23210 29.084 251 156 6 12 249 9 250 2.34e-24 102
MS.gene93807.t1 AT4G23210 29.084 251 156 6 12 249 9 250 2.35e-24 101
MS.gene93807.t1 AT4G23210 29.084 251 156 6 12 249 9 250 2.45e-24 101
MS.gene93807.t1 AT4G23210 29.084 251 156 6 12 249 9 250 2.45e-24 101
MS.gene93807.t1 AT4G23270 31.837 245 153 7 10 250 6 240 5.46e-24 100
MS.gene93807.t1 AT4G23270 31.837 245 153 7 10 250 6 240 6.05e-24 100
MS.gene93807.t1 AT4G23270 31.837 245 153 7 10 250 6 240 6.05e-24 100
MS.gene93807.t1 AT4G23240 30.918 207 138 3 47 250 41 245 7.57e-24 100
MS.gene93807.t1 AT4G23310 34.286 210 124 7 45 250 156 355 8.35e-24 100
MS.gene93807.t1 AT4G23300 28.761 226 143 4 37 249 30 250 8.56e-24 100
MS.gene93807.t1 AT3G21990 30.612 245 157 6 13 251 18 255 8.80e-24 96.7
MS.gene93807.t1 AT4G23310 34.286 210 124 7 45 250 156 355 9.06e-24 100
MS.gene93807.t1 AT3G58310 28.807 243 159 6 15 252 23 256 1.95e-23 95.9
MS.gene93807.t1 AT5G48540 28.689 244 159 6 11 250 9 241 2.03e-23 95.9
MS.gene93807.t1 AT4G23190 28.959 221 147 4 37 249 30 248 2.43e-23 99.0
MS.gene93807.t1 AT4G23190 28.959 221 147 4 37 249 30 248 2.47e-23 99.0
MS.gene93807.t1 AT2G31620 29.358 218 145 4 36 249 40 252 3.73e-23 95.1
MS.gene93807.t1 AT4G11521 27.632 228 157 4 27 249 17 241 1.29e-22 94.0
MS.gene93807.t1 AT4G04500 29.384 211 134 5 55 252 47 255 6.89e-22 94.4
MS.gene93807.t1 AT4G04500 29.384 211 134 5 55 252 47 255 6.89e-22 94.4
MS.gene93807.t1 AT4G04500 29.384 211 134 5 55 252 47 255 7.88e-22 94.7
MS.gene93807.t1 AT4G11490 27.982 218 147 3 10 222 8 220 8.11e-21 91.7
MS.gene93807.t1 AT3G21960 29.730 222 144 5 36 251 46 261 1.77e-20 87.8
MS.gene93807.t1 AT4G21410 41.732 127 71 2 127 251 1 126 2.13e-20 90.5
MS.gene93807.t1 AT1G61750 28.767 219 149 4 29 245 28 241 4.79e-20 88.2
MS.gene93807.t1 AT4G21400 38.095 126 77 1 127 251 1 126 4.98e-20 89.4
MS.gene93807.t1 AT4G23260 26.009 223 158 3 32 249 30 250 8.76e-20 88.6
MS.gene93807.t1 AT4G23260 26.009 223 158 3 32 249 30 250 9.51e-20 88.6
MS.gene93807.t1 AT3G21910 27.092 251 160 7 13 249 24 265 4.64e-19 84.3
MS.gene93807.t1 AT3G21940 34.973 183 96 6 88 252 3 180 9.46e-19 81.6
MS.gene93807.t1 AT5G41290 27.347 245 162 9 11 247 8 244 2.05e-18 82.8
MS.gene93807.t1 AT4G11480 22.115 208 154 3 45 249 36 238 3.75e-18 83.6
MS.gene93807.t1 AT3G21940 32.636 239 125 11 36 252 51 275 3.75e-18 82.0
MS.gene93807.t1 AT4G23290 28.507 221 144 7 38 249 31 246 4.38e-18 83.6
MS.gene93807.t1 AT4G11480 22.222 207 153 3 46 249 37 238 4.66e-18 83.6
MS.gene93807.t1 AT4G11480 22.222 207 153 3 46 249 37 238 5.13e-18 83.6
MS.gene93807.t1 AT4G11480 22.222 207 153 3 46 249 37 238 5.29e-18 83.6
MS.gene93807.t1 AT4G11460 30.114 176 113 4 83 249 1 175 7.50e-18 82.8
MS.gene93807.t1 AT4G04570 26.761 213 148 3 45 250 40 251 8.56e-18 82.8
MS.gene93807.t1 AT3G21920 28.516 256 152 10 13 249 24 267 9.40e-18 80.9
MS.gene93807.t1 AT4G04570 26.761 213 148 3 45 250 40 251 1.01e-17 82.8
MS.gene93807.t1 AT3G21920 28.516 256 152 10 13 249 46 289 1.38e-17 80.5
MS.gene93807.t1 AT3G21930 28.125 256 153 10 13 249 24 267 4.69e-17 79.0
MS.gene93807.t1 AT3G29040 29.435 248 157 8 12 249 13 252 5.54e-17 78.2
MS.gene93807.t1 AT1G63600 28.272 191 115 4 67 245 72 252 7.19e-17 79.0
MS.gene93807.t1 AT1G70690 26.877 253 156 11 1 245 2 233 7.48e-17 78.6
MS.gene93807.t1 AT4G23190 28.488 172 114 3 85 249 1 170 7.91e-17 80.1
MS.gene93807.t1 AT4G23190 28.488 172 114 3 85 249 1 170 7.91e-17 80.1
MS.gene93807.t1 AT4G04540 25.333 225 153 6 39 250 32 254 1.19e-16 79.3
MS.gene93807.t1 AT4G04540 25.333 225 153 6 39 250 32 254 1.28e-16 79.3
MS.gene93807.t1 AT3G22010 28.261 230 136 9 38 252 48 263 1.32e-16 77.4
MS.gene93807.t1 AT4G04540 25.333 225 153 6 39 250 32 254 1.48e-16 79.3
MS.gene93807.t1 AT4G04540 25.333 225 153 6 39 250 32 254 1.49e-16 79.0
MS.gene93807.t1 AT1G63550 24.255 235 145 5 26 246 30 245 2.59e-16 77.4
MS.gene93807.t1 AT4G11470 26.761 213 143 6 47 250 38 246 5.83e-16 77.4
MS.gene93807.t1 AT4G11470 26.761 213 143 6 47 250 43 251 6.19e-16 77.4
MS.gene93807.t1 AT1G63570 26.984 189 117 3 68 246 64 241 1.39e-15 74.7
MS.gene93807.t1 AT1G63570 26.984 189 117 3 68 246 64 241 1.39e-15 74.7
MS.gene93807.t1 AT3G22040 27.888 251 162 9 12 252 16 257 1.65e-15 74.3
MS.gene93807.t1 AT1G63570 26.984 189 117 3 68 246 117 294 2.01e-15 75.1
MS.gene93807.t1 AT4G04490 26.068 234 146 9 29 249 27 246 4.18e-15 75.1
MS.gene93807.t1 AT5G41280 25.683 183 127 4 68 246 67 244 4.52e-15 73.6
MS.gene93807.t1 AT3G22050 29.293 198 110 7 67 249 73 255 5.76e-15 72.8
MS.gene93807.t1 AT4G20680 28.444 225 144 8 39 252 49 267 6.12e-15 72.8
MS.gene93807.t1 AT3G21970 28.571 252 157 10 12 249 19 261 9.99e-15 72.0
MS.gene93807.t1 AT4G04510 25.792 221 147 4 41 250 34 248 1.02e-14 73.9
MS.gene93807.t1 AT4G04510 25.792 221 147 4 41 250 36 250 1.10e-14 73.6
MS.gene93807.t1 AT3G29050 26.255 259 162 9 13 249 22 273 2.16e-14 71.6
MS.gene93807.t1 AT3G22000 28.696 230 137 10 39 252 49 267 3.10e-14 70.9
MS.gene93807.t1 AT5G41300 25.514 243 161 7 10 244 15 245 4.98e-14 70.5
MS.gene93807.t1 AT2G01660 26.357 258 152 11 1 247 2 232 3.61e-13 67.8
MS.gene93807.t1 AT1G63590 26.000 200 125 6 59 245 55 244 3.71e-13 67.8
MS.gene93807.t1 AT2G01660 26.357 258 152 11 1 247 2 232 4.52e-13 67.8
MS.gene93807.t1 AT3G21900 25.822 213 148 5 37 249 45 247 4.57e-13 67.4
MS.gene93807.t1 AT2G01660 26.357 258 152 11 1 247 2 232 4.69e-13 67.8
MS.gene93807.t1 AT1G63580 24.528 212 138 4 46 245 36 237 1.35e-12 66.2
MS.gene93807.t1 AT3G21980 26.531 245 136 7 13 251 18 224 1.39e-11 62.8

Find 39 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTGTTGGTACAATATTT+TGG 0.104488 1.2:-78641385 None:intergenic
TATTCAGACCGTTCGATATT+AGG 0.205684 1.2:+78641103 MS.gene93807:CDS
GGTTTACTTTGTCGTCGTTT+TGG 0.318480 1.2:-78640937 None:intergenic
TGCTTTAGGTTTGATAGAAT+TGG 0.336798 1.2:-78641456 None:intergenic
ATGAGAAGGAGGAAGGAATA+TGG 0.349250 1.2:-78640737 None:intergenic
AGACATTTGCGACAGTCTTC+AGG 0.360535 1.2:-78640989 None:intergenic
GGTTTCTACAATACAAATTA+CGG 0.363088 1.2:+78640914 MS.gene93807:CDS
AGTAGTGATCAAACAATATA+TGG 0.388142 1.2:+78641289 MS.gene93807:CDS
TGGACATGCTTGTGTTAGAT+AGG 0.389375 1.2:-78641026 None:intergenic
AAATATTGTACCAACAAGAT+TGG 0.404642 1.2:+78641388 MS.gene93807:CDS
AATTCTACAACCAATCTTGT+TGG 0.410248 1.2:-78641398 None:intergenic
TTAGAGCAAGCTGTTATTTG+AGG 0.415196 1.2:+78641422 MS.gene93807:CDS
AAATGTGGCCTGCTATAATT+TGG 0.425646 1.2:+78641134 MS.gene93807:CDS
ACAGTGTACACCTGATTTGT+CGG 0.437811 1.2:+78641318 MS.gene93807:CDS
CCAAACAGAAAAGAAGCAAT+TGG 0.439075 1.2:+78641046 MS.gene93807:CDS
CGTTTACTTTAGATGTGAAA+AGG 0.440701 1.2:-78640763 None:intergenic
CACTGTGAAACCGACAAATC+AGG 0.458317 1.2:-78641328 None:intergenic
GAATGTGAACAATGCAACTT+TGG 0.483957 1.2:+78641159 MS.gene93807:CDS
GACGACAAAGTAAACCTCAT+TGG 0.487448 1.2:+78640944 MS.gene93807:CDS
TATATTGTTTGATCACTACT+AGG 0.502209 1.2:-78641286 None:intergenic
TATGCTGCAGGAACTTTGCC+AGG 0.503711 1.2:+78641262 MS.gene93807:CDS
TTCAACTCAAAAGTTAACTA+CGG 0.507432 1.2:+78640893 MS.gene93807:CDS
GATAGAGGCGACTACATAAC+CGG 0.514752 1.2:+78640824 MS.gene93807:CDS
GTTGTTATGGTAGGTACTAC+CGG 0.518720 1.2:-78640843 None:intergenic
AAGGATTATGAGAAGGAGGA+AGG 0.529566 1.2:-78640744 None:intergenic
ACATTCCACCAAATTATAGC+AGG 0.535057 1.2:-78641142 None:intergenic
TGAAAAGGATTATGAGAAGG+AGG 0.542640 1.2:-78640748 None:intergenic
TCACATCGTAAGTATGCTGC+AGG 0.560986 1.2:+78641250 MS.gene93807:CDS
ATGTGAAAAGGATTATGAGA+AGG 0.570955 1.2:-78640751 None:intergenic
TGTGGCCTGCTATAATTTGG+TGG 0.578852 1.2:+78641137 MS.gene93807:CDS
GGCAGATCAATTCAATAGTG+TGG 0.581694 1.2:+78641180 MS.gene93807:CDS
CTCCTCTACATATTCCAATG+AGG 0.587463 1.2:-78640958 None:intergenic
CGCTGAGGCCTAATATCGAA+CGG 0.598988 1.2:-78641111 None:intergenic
AACCTCATTGGAATATGTAG+AGG 0.614721 1.2:+78640956 MS.gene93807:CDS
ACAGAAAAGAAGCAATTGGA+TGG 0.618085 1.2:+78641050 MS.gene93807:CDS
GTTTGATCACTACTAGGACC+TGG 0.622316 1.2:-78641280 None:intergenic
TATTAGGCCTCAGCGAAATG+TGG 0.638853 1.2:+78641119 MS.gene93807:CDS
AGAAGCAATTGGATGGTACG+AGG 0.694836 1.2:+78641057 MS.gene93807:CDS
TAGCAGGCCACATTTCGCTG+AGG 0.701616 1.2:-78641126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTGAATGATTTAAAAAACA+AGG + chr1.2:78641213-78641232 MS.gene93807:CDS 20.0%
!!! GTTATTTTTGTCACATAAAT+AGG - chr1.2:78640804-78640823 None:intergenic 20.0%
! AAATATTGTACCAACAAGAT+TGG + chr1.2:78641388-78641407 MS.gene93807:CDS 25.0%
! AGTAGTGATCAAACAATATA+TGG + chr1.2:78641289-78641308 MS.gene93807:CDS 25.0%
! GGTTTCTACAATACAAATTA+CGG + chr1.2:78640914-78640933 MS.gene93807:CDS 25.0%
! TATATTGTTTGATCACTACT+AGG - chr1.2:78641289-78641308 None:intergenic 25.0%
! TTAAAAAACAAGGCTAGAAA+TGG + chr1.2:78641223-78641242 MS.gene93807:CDS 25.0%
! TTCAACTCAAAAGTTAACTA+CGG + chr1.2:78640893-78640912 MS.gene93807:CDS 25.0%
!! ATCTTGTTGGTACAATATTT+TGG - chr1.2:78641388-78641407 None:intergenic 25.0%
!! TCTTGTTGGTACAATATTTT+GGG - chr1.2:78641387-78641406 None:intergenic 25.0%
AATTCTACAACCAATCTTGT+TGG - chr1.2:78641401-78641420 None:intergenic 30.0%
ATGTGAAAAGGATTATGAGA+AGG - chr1.2:78640754-78640773 None:intergenic 30.0%
CGTTTACTTTAGATGTGAAA+AGG - chr1.2:78640766-78640785 None:intergenic 30.0%
TGTGACAAAAATAACGATAG+AGG + chr1.2:78640809-78640828 MS.gene93807:CDS 30.0%
!!! TAACTTTTGAGTTGAAAGTG+AGG - chr1.2:78640889-78640908 None:intergenic 30.0%
AAATGTGGCCTGCTATAATT+TGG + chr1.2:78641134-78641153 MS.gene93807:CDS 35.0%
AACCTCATTGGAATATGTAG+AGG + chr1.2:78640956-78640975 MS.gene93807:CDS 35.0%
ACAGAAAAGAAGCAATTGGA+TGG + chr1.2:78641050-78641069 MS.gene93807:CDS 35.0%
ACATTCCACCAAATTATAGC+AGG - chr1.2:78641145-78641164 None:intergenic 35.0%
CCAAACAGAAAAGAAGCAAT+TGG + chr1.2:78641046-78641065 MS.gene93807:CDS 35.0%
GAATGTGAACAATGCAACTT+TGG + chr1.2:78641159-78641178 MS.gene93807:CDS 35.0%
TATTCAGACCGTTCGATATT+AGG + chr1.2:78641103-78641122 MS.gene93807:CDS 35.0%
TGAAAAGGATTATGAGAAGG+AGG - chr1.2:78640751-78640770 None:intergenic 35.0%
! CCAATTGCTTCTTTTCTGTT+TGG - chr1.2:78641049-78641068 None:intergenic 35.0%
! GGTATATGAAAGCGATTTTG+AGG - chr1.2:78640868-78640887 None:intergenic 35.0%
! TTAGAGCAAGCTGTTATTTG+AGG + chr1.2:78641422-78641441 MS.gene93807:CDS 35.0%
!!! AAGCGATTTTGAGGTTGTTA+TGG - chr1.2:78640859-78640878 None:intergenic 35.0%
!!! GATTTTGAGGTTGTTATGGT+AGG - chr1.2:78640855-78640874 None:intergenic 35.0%
AAGGATTATGAGAAGGAGGA+AGG - chr1.2:78640747-78640766 None:intergenic 40.0%
ATGAGAAGGAGGAAGGAATA+TGG - chr1.2:78640740-78640759 None:intergenic 40.0%
CTCCTCTACATATTCCAATG+AGG - chr1.2:78640961-78640980 None:intergenic 40.0%
GACGACAAAGTAAACCTCAT+TGG + chr1.2:78640944-78640963 MS.gene93807:CDS 40.0%
GGCAGATCAATTCAATAGTG+TGG + chr1.2:78641180-78641199 MS.gene93807:CDS 40.0%
GTTGTTATGGTAGGTACTAC+CGG - chr1.2:78640846-78640865 None:intergenic 40.0%
TGGACATGCTTGTGTTAGAT+AGG - chr1.2:78641029-78641048 None:intergenic 40.0%
! ACAGTGTACACCTGATTTGT+CGG + chr1.2:78641318-78641337 MS.gene93807:CDS 40.0%
! GGTTTACTTTGTCGTCGTTT+TGG - chr1.2:78640940-78640959 None:intergenic 40.0%
AGAAGCAATTGGATGGTACG+AGG + chr1.2:78641057-78641076 MS.gene93807:CDS 45.0%
AGACATTTGCGACAGTCTTC+AGG - chr1.2:78640992-78641011 None:intergenic 45.0%
CACTGTGAAACCGACAAATC+AGG - chr1.2:78641331-78641350 None:intergenic 45.0%
GATAGAGGCGACTACATAAC+CGG + chr1.2:78640824-78640843 MS.gene93807:CDS 45.0%
GTTTGATCACTACTAGGACC+TGG - chr1.2:78641283-78641302 None:intergenic 45.0%
TATTAGGCCTCAGCGAAATG+TGG + chr1.2:78641119-78641138 MS.gene93807:CDS 45.0%
TCACATCGTAAGTATGCTGC+AGG + chr1.2:78641250-78641269 MS.gene93807:CDS 45.0%
TGTGGCCTGCTATAATTTGG+TGG + chr1.2:78641137-78641156 MS.gene93807:CDS 45.0%
CGCTGAGGCCTAATATCGAA+CGG - chr1.2:78641114-78641133 None:intergenic 50.0%
TATGCTGCAGGAACTTTGCC+AGG + chr1.2:78641262-78641281 MS.gene93807:CDS 50.0%
TAGCAGGCCACATTTCGCTG+AGG - chr1.2:78641129-78641148 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78640716 78641474 78640716 ID=MS.gene93807
chr1.2 mRNA 78640716 78641474 78640716 ID=MS.gene93807.t1;Parent=MS.gene93807
chr1.2 exon 78640716 78641474 78640716 ID=MS.gene93807.t1.exon1;Parent=MS.gene93807.t1
chr1.2 CDS 78640716 78641474 78640716 ID=cds.MS.gene93807.t1;Parent=MS.gene93807.t1
Gene Sequence

>MS.gene93807

ATGGCTACTATTTCTGTAAGTCCATATTCCTTCCTCCTTCTCATAATCCTTTTCACATCTAAAGTAAACGCAGATGACAATTTTACCTATTTATGTGACAAAAATAACGATAGAGGCGACTACATAACCGGTAGTACCTACCATAACAACCTCAAAATCGCTTTCATATACCTCACTTTCAACTCAAAAGTTAACTACGGTTTCTACAATACAAATTACGGCCAAAACGACGACAAAGTAAACCTCATTGGAATATGTAGAGGAGACATTAATCCTGAAGACTGTCGCAAATGTCTCGTTAGTTCAAAATCCTATCTAACACAAGCATGTCCAAACAGAAAAGAAGCAATTGGATGGTACGAGGCTGATCAGAAATGCATGTTGCGTTATTCAGACCGTTCGATATTAGGCCTCAGCGAAATGTGGCCTGCTATAATTTGGTGGAATGTGAACAATGCAACTTTGGCAGATCAATTCAATAGTGTGGCGAAACAATTGTTGAATGATTTAAAAAACAAGGCTAGAAATGGTGACTCACATCGTAAGTATGCTGCAGGAACTTTGCCAGGTCCTAGTAGTGATCAAACAATATATGGTCTTGTACAGTGTACACCTGATTTGTCGGTTTCACAGTGTGATGACTGTTTGAATGAATCTATTGCTGAAGTCCCAAAATATTGTACCAACAAGATTGGTTGTAGAATTTTTAGAGCAAGCTGTTATTTGAGGTTTGAAACTCACCAATTCTATCAAACCTAA
Protein sequence

>MS.gene93807.t1

MATISVSPYSFLLLIILFTSKVNADDNFTYLCDKNNDRGDYITGSTYHNNLKIAFIYLTFNSKVNYGFYNTNYGQNDDKVNLIGICRGDINPEDCRKCLVSSKSYLTQACPNRKEAIGWYEADQKCMLRYSDRSILGLSEMWPAIIWWNVNNATLADQFNSVAKQLLNDLKNKARNGDSHRKYAAGTLPGPSSDQTIYGLVQCTPDLSVSQCDDCLNESIAEVPKYCTNKIGCRIFRASCYLRFETHQFYQT