AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93840.t1 MTR_1g105480 99.713 349 1 0 1 349 1 349 0.0 717
MS.gene93840.t1 MTR_4g081130 77.183 355 70 4 1 349 1 350 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93840.t1 AT5G54770 79.429 350 67 3 4 349 1 349 0.0 560

Find 95 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTGAAGAATGAGGATT+TGG 0.249214 1.2:+78187609 None:intergenic
ATTTGATTGTGAAGGAAAAC+AGG 0.292288 1.2:-78187093 MS.gene93840:CDS
AAGTGAACCAGAGCTTATTT+TGG 0.293889 1.2:-78186177 MS.gene93840:CDS
TTGCTGGTGTTGTTACAAAC+TGG 0.325188 1.2:-78187069 MS.gene93840:CDS
GTTCCTGGTATGATTGTTAC+TGG 0.328065 1.2:-78186830 MS.gene93840:CDS
TGTGGACATGATGGTCCTTT+TGG 0.329730 1.2:-78186968 MS.gene93840:CDS
CATTTGGCATTGAAGGCATT+GGG 0.344159 1.2:-78186236 MS.gene93840:CDS
ATATCAAGAGCTTTCATTCC+AGG 0.353946 1.2:+78186896 None:intergenic
ATGATGGCGATACTGATGTT+TGG 0.371853 1.2:+78187343 None:intergenic
AGCTGCACATTTGGCATTGA+AGG 0.371858 1.2:-78186243 MS.gene93840:CDS
GGCATGATTGATCATGTTCC+TGG 0.372591 1.2:-78186914 MS.gene93840:CDS
AGGACAGAAAGCTGCACATT+TGG 0.390045 1.2:-78186252 MS.gene93840:CDS
TATTTGTAGGGTCCAACATT+TGG 0.390626 1.2:-78186290 MS.gene93840:intron
TGTTGTTACAAACTGGGCTT+TGG 0.398106 1.2:-78187062 MS.gene93840:CDS
TTTGGAGCAATGATGATATC+AGG 0.399325 1.2:-78186272 MS.gene93840:CDS
TTGAGGGGTTGATTTGATGA+TGG 0.407207 1.2:+78187561 None:intergenic
CCATTGAAGAATGAGGATTT+GGG 0.411622 1.2:+78187610 None:intergenic
TTGCATGGATCCTAACGTTA+TGG 0.415581 1.2:-78187014 MS.gene93840:CDS
AGGGGTTGATTTGATGATGG+TGG 0.417048 1.2:+78187564 None:intergenic
CACCTCTTCCTCGACGAAAT+CGG 0.418263 1.2:-78187241 MS.gene93840:CDS
AGAGACGATGGATTCTTTGA+TGG 0.420701 1.2:+78187480 None:intergenic
ACATTTGGCATTGAAGGCAT+TGG 0.420776 1.2:-78186237 MS.gene93840:CDS
TGATGGCGATACTGATGTTT+GGG 0.421589 1.2:+78187344 None:intergenic
TTGAAGGTGTTTATATCGTA+GGG 0.424530 1.2:+78187511 None:intergenic
GGGAGGAACAATGCAATTGA+TGG 0.425697 1.2:-78186215 MS.gene93840:CDS
CTTACAAGGGAAGTTGTTCC+TGG 0.428163 1.2:-78186845 MS.gene93840:CDS
GTGAAGGAAAACAGGGTTGC+TGG 0.432472 1.2:-78187085 MS.gene93840:CDS
CACCGATTTCGTCGAGGAAG+AGG 0.433057 1.2:+78187239 None:intergenic
GTTAAGAGGTTGAAGAGTAT+TGG 0.437389 1.2:-78186935 MS.gene93840:CDS
CAACCATGGCGGAGAAGAGC+TGG 0.441613 1.2:+78187278 None:intergenic
ATGCTATTGTTCGTCTTACA+AGG 0.448172 1.2:-78186859 MS.gene93840:CDS
CCCAAATCCTCATTCTTCAA+TGG 0.449478 1.2:-78187610 MS.gene93840:CDS
TGCTGGTGTTGTTACAAACT+GGG 0.449909 1.2:-78187068 MS.gene93840:CDS
TCAGTCCCGGCGGTGGTGCA+TGG 0.460552 1.2:-78187309 MS.gene93840:CDS
TTTGAAGGTGTTTATATCGT+AGG 0.479263 1.2:+78187510 None:intergenic
TTCGTAAGCGCAGGAAAGAC+CGG 0.479671 1.2:+78187378 None:intergenic
TTTGGCTTCTGCTGAATCAC+AGG 0.481383 1.2:-78186159 MS.gene93840:CDS
GGATTTGGGAGTTGAAGAGA+GGG 0.481980 1.2:+78187624 None:intergenic
GACGTCGTCATCGTCGGTGC+TGG 0.483458 1.2:-78187406 MS.gene93840:CDS
ACCGAGCCATGCACCACCGC+CGG 0.484848 1.2:+78187303 None:intergenic
TGGTCTTCCATTGAAGAATG+AGG 0.487141 1.2:+78187603 None:intergenic
TTTCAATGCTGTTGCTGCTG+AGG 0.487900 1.2:-78187116 MS.gene93840:CDS
ATCGTCGGTGCTGGTTCCGC+CGG 0.489753 1.2:-78187397 MS.gene93840:CDS
CCCGGCGGTGGTGCATGGCT+CGG 0.489948 1.2:-78187304 MS.gene93840:CDS
ATCATCATTGCTCCAAATGT+TGG 0.493887 1.2:+78186278 None:intergenic
GTGAGTTCTTGTGGACATGA+TGG 0.494717 1.2:-78186977 MS.gene93840:CDS
ACCTTAGCTTCCATAACGTT+AGG 0.498149 1.2:+78187004 None:intergenic
TGGTATGATTGTTACTGGTA+TGG 0.499259 1.2:-78186825 MS.gene93840:CDS
AGGATTTGGGAGTTGAAGAG+AGG 0.501201 1.2:+78187623 None:intergenic
TTGGTGCTACTGGTGTTAAG+AGG 0.502640 1.2:-78186949 MS.gene93840:CDS
GGTTGATTTGATGATGGTGG+AGG 0.506403 1.2:+78187567 None:intergenic
TGCAAGAAGCTTGCTCATGA+TGG 0.508423 1.2:+78187156 None:intergenic
GTGGAGGTGCGAGTAGCAAT+TGG 0.509453 1.2:+78187583 None:intergenic
TCCTAACGTTATGGAAGCTA+AGG 0.511192 1.2:-78187005 MS.gene93840:CDS
TTTGATGGGTGCGAATTTGA+AGG 0.512764 1.2:+78187495 None:intergenic
ATCGAACAATCCGTCAGTCC+CGG 0.515104 1.2:-78187322 MS.gene93840:CDS
TGGCCAGCTCTTCTCCGCCA+TGG 0.524431 1.2:-78187281 MS.gene93840:CDS
GAAGGTGTTTATATCGTAGG+GGG 0.526933 1.2:+78187513 None:intergenic
GAGACGATGGATTCTTTGAT+GGG 0.528361 1.2:+78187481 None:intergenic
TCGTCGAGGAAGAGGTGAGC+TGG 0.529142 1.2:+78187247 None:intergenic
CCATGCAAGATTGTGTATCA+TGG 0.534946 1.2:+78187029 None:intergenic
ATGGAAGTTGCTGAAATTGA+TGG 0.535463 1.2:-78186806 MS.gene93840:CDS
TGCACCACCGCCGGGACTGA+CGG 0.536366 1.2:+78187312 None:intergenic
CAATCCGTCAGTCCCGGCGG+TGG 0.537828 1.2:-78187316 MS.gene93840:CDS
AATACCCCTAATGGCATCCA+TGG 0.539198 1.2:-78187668 None:intergenic
TTTGGATAATTCGTAAGCGC+AGG 0.542761 1.2:+78187369 None:intergenic
CCATGATACACAATCTTGCA+TGG 0.547093 1.2:-78187029 MS.gene93840:CDS
GCAGAAGCCAAAATAAGCTC+TGG 0.553231 1.2:+78186170 None:intergenic
TTAACACCAGTAGCACCAAA+AGG 0.554005 1.2:+78186953 None:intergenic
AGTGAGAGATGCAGTGGCCA+TGG 0.554618 1.2:+78187651 None:intergenic
CCGAGCCATGCACCACCGCC+GGG 0.555283 1.2:+78187304 None:intergenic
AAGGTTGTTGTGAGTTCTTG+TGG 0.556055 1.2:-78186986 MS.gene93840:CDS
GGTCATTTCACGAGAGACGA+TGG 0.571046 1.2:+78187468 None:intergenic
CATGTCTGTCATGTAACGAC+GGG 0.572019 1.2:+78187447 None:intergenic
TGCTGAGGATTTGATTGTGA+AGG 0.582701 1.2:-78187101 MS.gene93840:CDS
GGAAGTAGTGAGAGATGCAG+TGG 0.583000 1.2:+78187645 None:intergenic
TTTGATTGTGAAGGAAAACA+GGG 0.585197 1.2:-78187092 MS.gene93840:CDS
AATTGATGGTGCCCCAAGAA+TGG 0.586166 1.2:-78186792 MS.gene93840:intron
AGCTGGTTTGCGAACAACCA+TGG 0.586408 1.2:+78187264 None:intergenic
GACACCGACGTCGTCATCGT+CGG 0.598766 1.2:-78187412 MS.gene93840:CDS
TGGCATTGAAGGCATTGGGG+AGG 0.601090 1.2:-78186232 MS.gene93840:CDS
ACTGACGGATTGTTCGATGA+TGG 0.606531 1.2:+78187327 None:intergenic
TGCTATTGTTCGTCTTACAA+GGG 0.611924 1.2:-78186858 MS.gene93840:CDS
AAGGTGTTTATATCGTAGGG+GGG 0.613541 1.2:+78187514 None:intergenic
ATTTGGCATTGAAGGCATTG+GGG 0.623024 1.2:-78186235 MS.gene93840:CDS
GGCGGTGGTGCATGGCTCGG+TGG 0.631054 1.2:-78187301 MS.gene93840:CDS
TGAAGGTGTTTATATCGTAG+GGG 0.653158 1.2:+78187512 None:intergenic
GACGACGTCGGTGTCAGCGT+AGG 0.654858 1.2:+78187420 None:intergenic
TCATGTCTGTCATGTAACGA+CGG 0.663647 1.2:+78187446 None:intergenic
ATTCGACACCGATTTCGTCG+AGG 0.679348 1.2:+78187233 None:intergenic
ATACCAGTAACAATCATACC+AGG 0.680671 1.2:+78186827 None:intergenic
GAACAATCCGTCAGTCCCGG+CGG 0.725163 1.2:-78187319 MS.gene93840:CDS
AGCACCGACGATGACGACGT+CGG 0.741189 1.2:+78187408 None:intergenic
TGGTTTGCGAACAACCATGG+CGG 0.745776 1.2:+78187267 None:intergenic
GTAAGCGCAGGAAAGACCGG+CGG 0.769815 1.2:+78187381 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTTATTTCAATTATTT+TGG - chr1.2:78187035-78187054 MS.gene93840:CDS 10.0%
! ATAAAAAAGCTTACCATTCT+TGG + chr1.2:78187024-78187043 None:intergenic 25.0%
! ATTAGACTCTTTATCTAAAG+AGG - chr1.2:78187365-78187384 MS.gene93840:CDS 25.0%
! TAAAAAAGCTTACCATTCTT+GGG + chr1.2:78187023-78187042 None:intergenic 25.0%
! TTATTACATATGCAAGTGTT+TGG + chr1.2:78187323-78187342 None:intergenic 25.0%
!!! ATTTTGTTGGTGATATTTGT+AGG - chr1.2:78187497-78187516 MS.gene93840:CDS 25.0%
!!! TTTTGTTGGTGATATTTGTA+GGG - chr1.2:78187498-78187517 MS.gene93840:CDS 25.0%
AAAAAAGCTTACCATTCTTG+GGG + chr1.2:78187022-78187041 None:intergenic 30.0%
ATTTGATTGTGAAGGAAAAC+AGG - chr1.2:78186707-78186726 MS.gene93840:intron 30.0%
TTTGATTGTGAAGGAAAACA+GGG - chr1.2:78186708-78186727 MS.gene93840:intron 30.0%
! GCATTGAAAAGTTTTACGTT+AGG + chr1.2:78186673-78186692 None:intergenic 30.0%
! TATTTTTCCCAACTGCATAT+TGG - chr1.2:78187418-78187437 MS.gene93840:CDS 30.0%
! TTTATCTAAAGAGGCCTTAT+AGG - chr1.2:78187374-78187393 MS.gene93840:CDS 30.0%
!! TTGAAGGTGTTTATATCGTA+GGG + chr1.2:78186292-78186311 None:intergenic 30.0%
!! TTTGAAGGTGTTTATATCGT+AGG + chr1.2:78186293-78186312 None:intergenic 30.0%
AAAACCAACCAATATGCAGT+TGG + chr1.2:78187429-78187448 None:intergenic 35.0%
AAACCAACCAATATGCAGTT+GGG + chr1.2:78187428-78187447 None:intergenic 35.0%
ATACCAGTAACAATCATACC+AGG + chr1.2:78186976-78186995 None:intergenic 35.0%
ATATCAAGAGCTTTCATTCC+AGG + chr1.2:78186907-78186926 None:intergenic 35.0%
ATCATCATTGCTCCAAATGT+TGG + chr1.2:78187525-78187544 None:intergenic 35.0%
ATGCTATTGTTCGTCTTACA+AGG - chr1.2:78186941-78186960 MS.gene93840:CDS 35.0%
ATGGAAGTTGCTGAAATTGA+TGG - chr1.2:78186994-78187013 MS.gene93840:CDS 35.0%
CCATTGAAGAATGAGGATTT+GGG + chr1.2:78186193-78186212 None:intergenic 35.0%
GATGCAATTTGGAGATGATA+AGG - chr1.2:78187449-78187468 MS.gene93840:CDS 35.0%
TATTTGTAGGGTCCAACATT+TGG - chr1.2:78187510-78187529 MS.gene93840:CDS 35.0%
TCCATTGAAGAATGAGGATT+TGG + chr1.2:78186194-78186213 None:intergenic 35.0%
TGCTATTGTTCGTCTTACAA+GGG - chr1.2:78186942-78186961 MS.gene93840:CDS 35.0%
TGGTATGATTGTTACTGGTA+TGG - chr1.2:78186975-78186994 MS.gene93840:CDS 35.0%
! AAGTGAACCAGAGCTTATTT+TGG - chr1.2:78187623-78187642 MS.gene93840:CDS 35.0%
! AGATGTGCTAACGATTTTGT+TGG - chr1.2:78187484-78187503 MS.gene93840:CDS 35.0%
! GTTAAGAGGTTGAAGAGTAT+TGG - chr1.2:78186865-78186884 MS.gene93840:CDS 35.0%
! TTTGGAGCAATGATGATATC+AGG - chr1.2:78187528-78187547 MS.gene93840:CDS 35.0%
!! GATACTGATGTTTGGGTTTT+TGG + chr1.2:78186452-78186471 None:intergenic 35.0%
!! TGAAGGTGTTTATATCGTAG+GGG + chr1.2:78186291-78186310 None:intergenic 35.0%
!!! AGTGACATGGTGATTTTTTG+AGG + chr1.2:78186259-78186278 None:intergenic 35.0%
!!! GTGACATGGTGATTTTTTGA+GGG + chr1.2:78186258-78186277 None:intergenic 35.0%
!!! TGACATGGTGATTTTTTGAG+GGG + chr1.2:78186257-78186276 None:intergenic 35.0%
!!! TGGTTGGTTTTGATGCAATT+TGG - chr1.2:78187438-78187457 MS.gene93840:CDS 35.0%
AAGGTTGTTGTGAGTTCTTG+TGG - chr1.2:78186814-78186833 MS.gene93840:CDS 40.0%
ACCTTAGCTTCCATAACGTT+AGG + chr1.2:78186799-78186818 None:intergenic 40.0%
CCATGATACACAATCTTGCA+TGG - chr1.2:78186771-78186790 MS.gene93840:intron 40.0%
CCATGCAAGATTGTGTATCA+TGG + chr1.2:78186774-78186793 None:intergenic 40.0%
CCCAAATCCTCATTCTTCAA+TGG - chr1.2:78186190-78186209 MS.gene93840:CDS 40.0%
GTTCCTGGTATGATTGTTAC+TGG - chr1.2:78186970-78186989 MS.gene93840:CDS 40.0%
TCATGTCTGTCATGTAACGA+CGG + chr1.2:78186357-78186376 None:intergenic 40.0%
TCCTAACGTTATGGAAGCTA+AGG - chr1.2:78186795-78186814 MS.gene93840:CDS 40.0%
TGCTGAGGATTTGATTGTGA+AGG - chr1.2:78186699-78186718 MS.gene93840:intron 40.0%
TGGTCTTCCATTGAAGAATG+AGG + chr1.2:78186200-78186219 None:intergenic 40.0%
TGTTGTTACAAACTGGGCTT+TGG - chr1.2:78186738-78186757 MS.gene93840:intron 40.0%
TTAACACCAGTAGCACCAAA+AGG + chr1.2:78186850-78186869 None:intergenic 40.0%
TTGCATGGATCCTAACGTTA+TGG - chr1.2:78186786-78186805 MS.gene93840:intron 40.0%
TTTCCCAACTGCATATTGGT+TGG - chr1.2:78187422-78187441 MS.gene93840:CDS 40.0%
TTTGGATAATTCGTAAGCGC+AGG + chr1.2:78186434-78186453 None:intergenic 40.0%
! AAGGTGTTTATATCGTAGGG+GGG + chr1.2:78186289-78186308 None:intergenic 40.0%
! ACATTTGGCATTGAAGGCAT+TGG - chr1.2:78187563-78187582 MS.gene93840:CDS 40.0%
! AGAGACGATGGATTCTTTGA+TGG + chr1.2:78186323-78186342 None:intergenic 40.0%
! ATGATGGCGATACTGATGTT+TGG + chr1.2:78186460-78186479 None:intergenic 40.0%
! CCTTATAGGCTTGTTTGTAG+GGG - chr1.2:78187388-78187407 MS.gene93840:CDS 40.0%
! CTTATAGGCTTGTTTGTAGG+GGG - chr1.2:78187389-78187408 MS.gene93840:CDS 40.0%
! GAGACGATGGATTCTTTGAT+GGG + chr1.2:78186322-78186341 None:intergenic 40.0%
! GCCTTATAGGCTTGTTTGTA+GGG - chr1.2:78187387-78187406 MS.gene93840:CDS 40.0%
! TGATGGCGATACTGATGTTT+GGG + chr1.2:78186459-78186478 None:intergenic 40.0%
! TTATAGGCTTGTTTGTAGGG+GGG - chr1.2:78187390-78187409 MS.gene93840:CDS 40.0%
! TTTGATGGGTGCGAATTTGA+AGG + chr1.2:78186308-78186327 None:intergenic 40.0%
!! ATTTGGCATTGAAGGCATTG+GGG - chr1.2:78187565-78187584 MS.gene93840:CDS 40.0%
!! CATTTGGCATTGAAGGCATT+GGG - chr1.2:78187564-78187583 MS.gene93840:CDS 40.0%
!! GAAGGTGTTTATATCGTAGG+GGG + chr1.2:78186290-78186309 None:intergenic 40.0%
!! TGCTGGTGTTGTTACAAACT+GGG - chr1.2:78186732-78186751 MS.gene93840:intron 40.0%
!! TTGAGGGGTTGATTTGATGA+TGG + chr1.2:78186242-78186261 None:intergenic 40.0%
!! TTGCTGGTGTTGTTACAAAC+TGG - chr1.2:78186731-78186750 MS.gene93840:intron 40.0%
AGGACAGAAAGCTGCACATT+TGG - chr1.2:78187548-78187567 MS.gene93840:CDS 45.0%
AGGATTTGGGAGTTGAAGAG+AGG + chr1.2:78186180-78186199 None:intergenic 45.0%
CATGTCTGTCATGTAACGAC+GGG + chr1.2:78186356-78186375 None:intergenic 45.0%
CCCCTACAAACAAGCCTATA+AGG + chr1.2:78187391-78187410 None:intergenic 45.0%
CTTACAAGGGAAGTTGTTCC+TGG - chr1.2:78186955-78186974 MS.gene93840:CDS 45.0%
GCAGAAGCCAAAATAAGCTC+TGG + chr1.2:78187633-78187652 None:intergenic 45.0%
GGATTTGGGAGTTGAAGAGA+GGG + chr1.2:78186179-78186198 None:intergenic 45.0%
GGCATGATTGATCATGTTCC+TGG - chr1.2:78186886-78186905 MS.gene93840:CDS 45.0%
GGGAGGAACAATGCAATTGA+TGG - chr1.2:78187585-78187604 MS.gene93840:CDS 45.0%
GTGAGTTCTTGTGGACATGA+TGG - chr1.2:78186823-78186842 MS.gene93840:CDS 45.0%
TTTCAATGCTGTTGCTGCTG+AGG - chr1.2:78186684-78186703 MS.gene93840:intron 45.0%
! AGCTGCACATTTGGCATTGA+AGG - chr1.2:78187557-78187576 MS.gene93840:CDS 45.0%
! GGCCTTATAGGCTTGTTTGT+AGG - chr1.2:78187386-78187405 MS.gene93840:CDS 45.0%
! TGCAAGAAGCTTGCTCATGA+TGG + chr1.2:78186647-78186666 None:intergenic 45.0%
! TGTGGACATGATGGTCCTTT+TGG - chr1.2:78186832-78186851 MS.gene93840:CDS 45.0%
! TTTGGCTTCTGCTGAATCAC+AGG - chr1.2:78187641-78187660 MS.gene93840:CDS 45.0%
!! AATTGATGGTGCCCCAAGAA+TGG - chr1.2:78187008-78187027 MS.gene93840:CDS 45.0%
!! ACTGACGGATTGTTCGATGA+TGG + chr1.2:78186476-78186495 None:intergenic 45.0%
!! AGGGGTTGATTTGATGATGG+TGG + chr1.2:78186239-78186258 None:intergenic 45.0%
!! GGTTGATTTGATGATGGTGG+AGG + chr1.2:78186236-78186255 None:intergenic 45.0%
!! TTGGTGCTACTGGTGTTAAG+AGG - chr1.2:78186851-78186870 MS.gene93840:CDS 45.0%
ATCGAACAATCCGTCAGTCC+CGG - chr1.2:78186478-78186497 MS.gene93840:intron 50.0%
CACCTCTTCCTCGACGAAAT+CGG - chr1.2:78186559-78186578 MS.gene93840:intron 50.0%
GGAAGTAGTGAGAGATGCAG+TGG + chr1.2:78186158-78186177 None:intergenic 50.0%
GGTCATTTCACGAGAGACGA+TGG + chr1.2:78186335-78186354 None:intergenic 50.0%
GTGAAGGAAAACAGGGTTGC+TGG - chr1.2:78186715-78186734 MS.gene93840:intron 50.0%
GTTTATATCGTAGGGGGGTG+TGG + chr1.2:78186284-78186303 None:intergenic 50.0%
TTCGTAAGCGCAGGAAAGAC+CGG + chr1.2:78186425-78186444 None:intergenic 50.0%
! TGGTTTGCGAACAACCATGG+CGG + chr1.2:78186536-78186555 None:intergenic 50.0%
!! AGCTGGTTTGCGAACAACCA+TGG + chr1.2:78186539-78186558 None:intergenic 50.0%
!! ATTCGACACCGATTTCGTCG+AGG + chr1.2:78186570-78186589 None:intergenic 50.0%
!!! GATGGTCCTTTTGGTGCTAC+TGG - chr1.2:78186841-78186860 MS.gene93840:CDS 50.0%
AGTGAGAGATGCAGTGGCCA+TGG + chr1.2:78186152-78186171 None:intergenic 55.0%
! GTGGAGGTGCGAGTAGCAAT+TGG + chr1.2:78186220-78186239 None:intergenic 55.0%
!! CACCGATTTCGTCGAGGAAG+AGG + chr1.2:78186564-78186583 None:intergenic 55.0%
!! TGGCATTGAAGGCATTGGGG+AGG - chr1.2:78187568-78187587 MS.gene93840:CDS 55.0%
GAACAATCCGTCAGTCCCGG+CGG - chr1.2:78186481-78186500 MS.gene93840:intron 60.0%
GACACCGACGTCGTCATCGT+CGG - chr1.2:78186388-78186407 MS.gene93840:intron 60.0%
GTAAGCGCAGGAAAGACCGG+CGG + chr1.2:78186422-78186441 None:intergenic 60.0%
TCGTCGAGGAAGAGGTGAGC+TGG + chr1.2:78186556-78186575 None:intergenic 60.0%
! CAACCATGGCGGAGAAGAGC+TGG + chr1.2:78186525-78186544 None:intergenic 60.0%
! GGGGGGTGTGGTTAGTGACA+TGG + chr1.2:78186272-78186291 None:intergenic 60.0%
!! AGCACCGACGATGACGACGT+CGG + chr1.2:78186395-78186414 None:intergenic 60.0%
GACGTCGTCATCGTCGGTGC+TGG - chr1.2:78186394-78186413 MS.gene93840:intron 65.0%
TGGCCAGCTCTTCTCCGCCA+TGG - chr1.2:78186519-78186538 MS.gene93840:intron 65.0%
!! ATCGTCGGTGCTGGTTCCGC+CGG - chr1.2:78186403-78186422 MS.gene93840:intron 65.0%
!! GACGACGTCGGTGTCAGCGT+AGG + chr1.2:78186383-78186402 None:intergenic 65.0%
ACCGAGCCATGCACCACCGC+CGG + chr1.2:78186500-78186519 None:intergenic 70.0%
CAATCCGTCAGTCCCGGCGG+TGG - chr1.2:78186484-78186503 MS.gene93840:intron 70.0%
TCAGTCCCGGCGGTGGTGCA+TGG - chr1.2:78186491-78186510 MS.gene93840:intron 70.0%
TGCACCACCGCCGGGACTGA+CGG + chr1.2:78186491-78186510 None:intergenic 70.0%
CCCGGCGGTGGTGCATGGCT+CGG - chr1.2:78186496-78186515 MS.gene93840:intron 75.0%
CCGAGCCATGCACCACCGCC+GGG + chr1.2:78186499-78186518 None:intergenic 75.0%
! GGCGGTGGTGCATGGCTCGG+TGG - chr1.2:78186499-78186518 MS.gene93840:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78186142 78187680 78186142 ID=MS.gene93840
chr1.2 mRNA 78186142 78187680 78186142 ID=MS.gene93840.t1;Parent=MS.gene93840
chr1.2 exon 78186793 78187680 78186793 ID=MS.gene93840.t1.exon1;Parent=MS.gene93840.t1
chr1.2 CDS 78186793 78187680 78186793 ID=cds.MS.gene93840.t1;Parent=MS.gene93840.t1
chr1.2 exon 78186142 78186303 78186142 ID=MS.gene93840.t1.exon2;Parent=MS.gene93840.t1
chr1.2 CDS 78186142 78186303 78186142 ID=cds.MS.gene93840.t1;Parent=MS.gene93840.t1
Gene Sequence

>MS.gene93840

ATGGCATCCATGGCCACTGCATCTCTCACTACTTCCCTCTCTTCAACTCCCAAATCCTCATTCTTCAATGGAAGACCAATTGCTACTCGCACCTCCACCATCATCAAATCAACCCCTCAAAAAATCACCATGTCACTAACCACACCCCCCTACGATATAAACACCTTCAAATTCGCACCCATCAAAGAATCCATCGTCTCTCGTGAAATGACCCGTCGTTACATGACAGACATGATCACCTACGCTGACACCGACGTCGTCATCGTCGGTGCTGGTTCCGCCGGTCTTTCCTGCGCTTACGAATTATCCAAAAACCCAAACATCAGTATCGCCATCATCGAACAATCCGTCAGTCCCGGCGGTGGTGCATGGCTCGGTGGCCAGCTCTTCTCCGCCATGGTTGTTCGCAAACCAGCTCACCTCTTCCTCGACGAAATCGGTGTCGAATACGACGAACAAGAAGACTACGTTGTTATCAAACACGCTGCTCTATTCACTTCAACCATCATGAGCAAGCTTCTTGCAAAACCTAACGTAAAACTTTTCAATGCTGTTGCTGCTGAGGATTTGATTGTGAAGGAAAACAGGGTTGCTGGTGTTGTTACAAACTGGGCTTTGGTTTCGATGAACCATGATACACAATCTTGCATGGATCCTAACGTTATGGAAGCTAAGGTTGTTGTGAGTTCTTGTGGACATGATGGTCCTTTTGGTGCTACTGGTGTTAAGAGGTTGAAGAGTATTGGCATGATTGATCATGTTCCTGGAATGAAAGCTCTTGATATGAATACTGCTGAAGATGCTATTGTTCGTCTTACAAGGGAAGTTGTTCCTGGTATGATTGTTACTGGTATGGAAGTTGCTGAAATTGATGGTGCCCCAAGAATGGTAAGCTTTTTTATTTCAATTATTTTGGCACAAGCTTAGTTAAATTTTGTGTTTGTGATATTGAGTTAAGATTGAATTATTTGAACTTGTATAGTGACATGTATGTATTTGTGAATAGTAGCTTTTGAAAATAGTTTATAGTTTACACTATATAGTTTGATTTTATTTTATCTTTTGTTATAGAAATAGTTGATATATAGACTTGTTTGTATTGATTTATTTGAAAACAATTTTATTTTATCTTTTGCAATAGAAGTAGAAGTTGCAAATAAGCTGTTTATTCAATCAAGCCAAACACTTGCATATGTAATAAGTGTTTATGCTATCAGCAGTTAATTAGACTCTTTATCTAAAGAGGCCTTATAGGCTTGTTTGTAGGGGGGTTAGATATTTTTCCCAACTGCATATTGGTTGGTTTTGATGCAATTTGGAGATGATAAGGAACATTTGATTAAGATGTGCTAACGATTTTGTTGGTGATATTTGTAGGGTCCAACATTTGGAGCAATGATGATATCAGGACAGAAAGCTGCACATTTGGCATTGAAGGCATTGGGGAGGAACAATGCAATTGATGGAACATGTGAATCTGCAAGTGAACCAGAGCTTATTTTGGCTTCTGCTGAATCACAGGACACTGTTGATGCTTAA
Protein sequence

>MS.gene93840.t1

MASMATASLTTSLSSTPKSSFFNGRPIATRTSTIIKSTPQKITMSLTTPPYDINTFKFAPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNISIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEIGVEYDEQEDYVVIKHAALFTSTIMSKLLAKPNVKLFNAVAAEDLIVKENRVAGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRNNAIDGTCESASEPELILASAESQDTVDA