AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94587

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94587.t1 MTR_2g084230 92.332 313 12 2 1 307 1 307 0.0 568
MS.gene94587.t1 MTR_2g084230 92.332 313 12 2 1 307 1 307 0.0 563
MS.gene94587.t1 MTR_8g086410 64.493 138 43 2 32 167 46 179 2.41e-45 159
MS.gene94587.t1 MTR_8g086410 64.493 138 43 2 32 167 48 181 2.53e-45 159
MS.gene94587.t1 MTR_2g016220 57.895 152 50 4 35 183 37 177 4.49e-45 157
MS.gene94587.t1 MTR_2g016220 57.895 152 50 4 35 183 37 177 5.99e-45 157
MS.gene94587.t1 MTR_2g016220 56.410 156 50 5 35 183 37 181 6.40e-43 152
MS.gene94587.t1 MTR_8g086410 61.379 145 43 3 32 167 48 188 1.15e-42 152
MS.gene94587.t1 MTR_7g069660 66.667 111 36 1 52 162 27 136 6.59e-42 148
MS.gene94587.t1 MTR_2g023580 59.140 93 38 0 75 167 33 125 2.24e-32 120
MS.gene94587.t1 MTR_0223s0040 69.737 76 23 0 84 159 5 80 2.10e-31 119
MS.gene94587.t1 MTR_1g112370 60.000 90 33 2 83 169 8 97 2.54e-30 117
MS.gene94587.t1 MTR_3g450310 55.696 79 29 1 75 153 3 75 4.30e-23 95.1
MS.gene94587.t1 MTR_1g021520 64.789 71 22 2 89 158 120 188 2.00e-21 92.4
MS.gene94587.t1 MTR_6g071625 68.966 58 18 0 96 153 201 258 1.90e-20 90.9
MS.gene94587.t1 MTR_5g029470 68.966 58 18 0 96 153 218 275 3.73e-20 90.5
MS.gene94587.t1 MTR_3g064840 68.966 58 18 0 96 153 273 330 5.18e-20 90.5
MS.gene94587.t1 MTR_8g066310 63.934 61 22 0 96 156 172 232 9.17e-20 89.0
MS.gene94587.t1 MTR_7g115530 60.294 68 26 1 98 164 219 286 2.32e-19 87.0
MS.gene94587.t1 MTR_7g098250 67.857 56 18 0 98 153 263 318 2.71e-19 88.6
MS.gene94587.t1 MTR_7g115530 49.425 87 43 1 98 183 219 305 4.75e-19 86.3
MS.gene94587.t1 MTR_7g093030 51.064 94 38 3 93 185 208 294 5.00e-19 85.9
MS.gene94587.t1 MTR_7g115530 49.425 87 43 1 98 183 219 305 5.58e-19 87.4
MS.gene94587.t1 MTR_7g093030 50.000 96 40 3 93 187 208 296 6.39e-19 86.7
MS.gene94587.t1 MTR_1g080330 61.194 67 25 1 87 153 166 231 6.71e-19 85.5
MS.gene94587.t1 MTR_1g080330 61.194 67 25 1 87 153 166 231 7.08e-19 86.7
MS.gene94587.t1 MTR_7g115530 66.071 56 19 0 98 153 219 274 1.02e-18 85.9
MS.gene94587.t1 MTR_7g115530 64.286 56 20 0 98 153 219 274 2.25e-17 80.9
MS.gene94587.t1 MTR_7g115530 67.308 52 17 0 98 149 219 270 2.95e-17 80.9
MS.gene94587.t1 MTR_1g053835 50.000 96 39 3 70 164 239 326 3.88e-17 81.6
MS.gene94587.t1 MTR_5g027440 60.345 58 23 0 93 150 21 78 6.34e-17 79.7
MS.gene94587.t1 MTR_1g053830 49.333 75 37 1 99 172 20 94 7.50e-17 75.1
MS.gene94587.t1 MTR_6g032990 62.264 53 20 0 98 150 43 95 8.42e-17 80.5
MS.gene94587.t1 MTR_2g086450 58.929 56 23 0 98 153 46 101 1.00e-16 80.5
MS.gene94587.t1 MTR_7g088070 65.000 60 20 1 99 157 52 111 3.20e-16 77.8
MS.gene94587.t1 MTR_7g088070 65.000 60 20 1 99 157 52 111 3.46e-16 77.4
MS.gene94587.t1 MTR_2g027800 42.857 105 50 2 98 202 40 134 4.78e-16 77.8
MS.gene94587.t1 MTR_1g090670 60.714 56 22 0 98 153 45 100 5.66e-16 77.4
MS.gene94587.t1 MTR_2g027800 62.264 53 20 0 98 150 40 92 1.26e-15 76.3
MS.gene94587.t1 MTR_2g027860 65.455 55 19 0 99 153 51 105 2.38e-15 75.9
MS.gene94587.t1 MTR_5g041350 52.830 53 25 0 98 150 16 68 5.06e-15 75.1
MS.gene94587.t1 MTR_6g444980 32.704 159 89 3 98 249 36 183 2.51e-14 73.2
MS.gene94587.t1 MTR_6g444980 55.357 56 25 0 98 153 36 91 3.01e-14 72.8
MS.gene94587.t1 MTR_4g081710 52.830 53 25 0 98 150 18 70 1.78e-13 70.5
MS.gene94587.t1 MTR_1g053800 58.491 53 22 0 99 151 179 231 1.82e-13 70.1
MS.gene94587.t1 MTR_7g068600 61.017 59 20 1 99 154 15 73 3.14e-13 68.6
MS.gene94587.t1 MTR_7g093010 58.491 53 22 0 99 151 215 267 8.11e-12 65.9
MS.gene94587.t1 MTR_4g021790 43.243 74 38 2 80 150 148 220 1.08e-11 64.7
MS.gene94587.t1 MTR_4g113140 39.130 92 48 1 67 150 197 288 1.78e-11 65.1
MS.gene94587.t1 MTR_2g450070 52.727 55 25 1 96 150 212 265 2.99e-11 64.7
MS.gene94587.t1 MTR_4g086835 45.455 66 36 0 85 150 262 327 3.09e-11 64.3
MS.gene94587.t1 MTR_4g064730 53.125 64 29 1 87 150 121 183 3.09e-11 63.5
MS.gene94587.t1 MTR_2g450070 52.727 55 25 1 96 150 212 265 3.11e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94587.t1 AT2G38300 73.256 86 23 0 77 162 34 119 5.26e-38 138
MS.gene94587.t1 AT2G42660 67.021 94 20 2 89 177 42 129 8.29e-35 127
MS.gene94587.t1 AT2G40260 75.325 77 19 0 80 156 65 141 3.72e-33 126
MS.gene94587.t1 AT4G04605 65.882 85 27 1 89 171 6 90 1.87e-31 117
MS.gene94587.t1 AT2G02060 67.059 85 21 2 66 150 5 82 1.94e-28 110
MS.gene94587.t1 AT2G02060 67.059 85 21 2 66 150 5 82 1.94e-28 110
MS.gene94587.t1 AT1G14600 67.606 71 23 0 89 159 15 85 1.62e-27 108
MS.gene94587.t1 AT4G04555 61.644 73 28 0 85 157 2 74 3.62e-25 97.8
MS.gene94587.t1 AT4G04580 59.155 71 29 0 89 159 6 76 7.81e-24 95.9
MS.gene94587.t1 AT5G42630 65.079 63 22 0 96 158 104 166 6.12e-22 92.4
MS.gene94587.t1 AT5G42630 65.079 63 22 0 96 158 104 166 1.09e-21 92.8
MS.gene94587.t1 AT1G32240 68.966 58 18 0 96 153 212 269 2.47e-20 90.5
MS.gene94587.t1 AT4G17695 62.319 69 24 1 88 156 157 223 3.09e-20 89.7
MS.gene94587.t1 AT1G32240 68.966 58 18 0 96 153 212 269 3.15e-20 90.5
MS.gene94587.t1 AT5G16560 68.966 58 18 0 96 153 218 275 4.37e-20 90.1
MS.gene94587.t1 AT5G29000 36.250 160 89 5 5 153 130 287 8.29e-20 88.2
MS.gene94587.t1 AT5G29000 36.250 160 89 6 5 153 130 287 3.98e-19 87.4
MS.gene94587.t1 AT5G29000 36.250 160 89 6 5 153 87 244 4.56e-19 87.0
MS.gene94587.t1 AT5G29000 36.250 160 89 6 5 153 87 244 4.56e-19 87.0
MS.gene94587.t1 AT4G28610 48.276 87 43 1 99 183 227 313 6.33e-19 87.0
MS.gene94587.t1 AT5G45580 47.191 89 42 1 93 181 3 86 2.21e-18 83.6
MS.gene94587.t1 AT5G45580 47.191 89 42 1 93 181 19 102 3.00e-18 83.6
MS.gene94587.t1 AT3G04450 52.778 72 29 1 99 165 240 311 7.31e-18 82.8
MS.gene94587.t1 AT3G04450 61.818 55 21 0 99 153 200 254 2.59e-17 82.4
MS.gene94587.t1 AT3G04450 61.818 55 21 0 99 153 200 254 2.59e-17 82.4
MS.gene94587.t1 AT3G04450 61.818 55 21 0 99 153 240 294 2.93e-17 82.4
MS.gene94587.t1 AT3G13040 67.273 55 18 0 99 153 243 297 1.04e-16 80.9
MS.gene94587.t1 AT3G13040 67.273 55 18 0 99 153 243 297 1.04e-16 80.9
MS.gene94587.t1 AT3G13040 67.273 55 18 0 99 153 243 297 1.04e-16 80.9
MS.gene94587.t1 AT5G18240 43.269 104 56 2 65 167 13 114 1.78e-16 79.7
MS.gene94587.t1 AT5G18240 43.269 104 56 2 65 167 13 114 1.78e-16 79.7
MS.gene94587.t1 AT5G18240 43.269 104 56 2 65 167 13 114 2.14e-16 79.7
MS.gene94587.t1 AT5G18240 43.269 104 56 2 65 167 13 114 2.14e-16 79.7
MS.gene94587.t1 AT5G18240 43.269 104 56 2 65 167 13 114 2.28e-16 79.3
MS.gene94587.t1 AT2G06020 47.561 82 40 1 80 158 66 147 4.22e-16 77.8
MS.gene94587.t1 AT3G04030 55.932 59 25 1 98 155 46 104 5.47e-16 78.2
MS.gene94587.t1 AT3G04030 55.932 59 25 1 98 155 46 104 6.68e-16 78.2
MS.gene94587.t1 AT2G01060 65.455 55 19 0 99 153 17 71 1.28e-15 76.3
MS.gene94587.t1 AT3G12730 36.885 122 60 3 98 213 24 134 1.36e-15 75.1
MS.gene94587.t1 AT5G06800 56.452 62 26 1 99 159 194 255 3.04e-15 75.1
MS.gene94587.t1 AT2G20400 63.636 55 20 0 99 153 233 287 3.59e-15 75.9
MS.gene94587.t1 AT2G20400 63.636 55 20 0 99 153 233 287 3.60e-15 75.9
MS.gene94587.t1 AT3G24120 56.604 53 23 0 98 150 42 94 9.32e-15 73.9
MS.gene94587.t1 AT3G24120 56.604 53 23 0 98 150 42 94 9.58e-15 73.9
MS.gene94587.t1 AT4G13640 56.604 53 23 0 98 150 38 90 9.85e-15 73.6
MS.gene94587.t1 AT4G13640 56.604 53 23 0 98 150 38 90 1.02e-14 73.6
MS.gene94587.t1 AT5G06800 56.452 62 26 1 99 159 194 255 1.55e-14 73.9
MS.gene94587.t1 AT5G06800 60.000 55 22 0 99 153 194 248 1.59e-14 73.9
MS.gene94587.t1 AT1G79430 55.357 56 25 0 98 153 35 90 1.78e-14 73.6
MS.gene94587.t1 AT1G69580 34.711 121 73 3 98 213 35 154 2.67e-14 72.8
MS.gene94587.t1 AT1G69580 40.426 94 51 2 98 186 35 128 4.16e-14 72.4
MS.gene94587.t1 AT3G04030 54.237 59 25 2 98 155 46 103 1.62e-13 70.9
MS.gene94587.t1 AT5G59570 57.143 56 23 1 95 150 139 193 1.20e-11 64.7
MS.gene94587.t1 AT5G59570 57.143 56 23 1 95 150 139 193 1.20e-11 64.7
MS.gene94587.t1 AT2G03500 50.746 67 31 1 84 150 222 286 2.42e-11 64.7
MS.gene94587.t1 AT3G62670 44.872 78 38 2 78 150 191 268 2.48e-11 64.7
MS.gene94587.t1 AT4G31920 35.878 131 76 3 65 189 145 273 3.51e-11 64.3
MS.gene94587.t1 AT3G16857 43.158 95 49 3 60 150 126 219 4.30e-11 63.9
MS.gene94587.t1 AT3G46640 56.364 55 23 1 96 150 143 196 5.05e-11 63.2
MS.gene94587.t1 AT3G46640 56.364 55 23 1 96 150 143 196 5.05e-11 63.2
MS.gene94587.t1 AT3G16857 43.158 95 49 3 60 150 196 289 5.16e-11 63.9
MS.gene94587.t1 AT3G46640 56.364 55 23 1 96 150 143 196 6.46e-11 62.8
MS.gene94587.t1 AT3G16857 43.158 95 49 3 60 150 196 289 6.81e-11 63.5
MS.gene94587.t1 AT4G37180 50.847 59 29 0 92 150 205 263 7.39e-11 62.8
MS.gene94587.t1 AT5G05090 52.000 75 33 3 77 150 61 133 7.66e-11 62.0
MS.gene94587.t1 AT4G37180 50.847 59 29 0 92 150 212 270 9.37e-11 62.4

Find 58 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACTTGGCTAGACCTAAT+AGG 0.308735 2.4:+15350124 None:intergenic
GCAAGGAAGGCATCACATTA+TGG 0.348737 2.4:-15350736 MS.gene94587:CDS
GTCCTCTCACATTCATTAAC+TGG 0.352977 2.4:+15351403 None:intergenic
ACTATATAGGGCCAACTCTA+TGG 0.355760 2.4:-15349892 MS.gene94587:intron
CATTAACTGGAGAACTAACT+TGG 0.357662 2.4:+15351416 None:intergenic
TTCACTGAGTACACAATGTT+TGG 0.372301 2.4:-15349983 MS.gene94587:CDS
CGGGTAGTAATTGACTTACT+TGG 0.374141 2.4:+15350110 None:intergenic
TTCACATCTATTTGATGTAA+AGG 0.385780 2.4:-15350173 MS.gene94587:CDS
TCAAAGCTCATGACACTTCA+AGG 0.388453 2.4:-15350632 MS.gene94587:intron
ACATGTGAAGAGTCATTTGC+AGG 0.413814 2.4:-15351370 MS.gene94587:intron
GAAATAATATTGCACCTATT+AGG 0.414171 2.4:-15350138 MS.gene94587:CDS
AATAATAATTCTAGTGAAGA+AGG 0.443311 2.4:-15352137 MS.gene94587:CDS
TTATCTCAAGGGGATGATAA+TGG 0.444178 2.4:-15350076 MS.gene94587:CDS
GTGCATGCTGTTGAGAGGCT+TGG 0.454830 2.4:-15352029 MS.gene94587:CDS
CATCACATTATGGATATGTA+TGG 0.459114 2.4:-15350726 MS.gene94587:CDS
ACAAAAGATAAATGAAGATC+AGG 0.462114 2.4:+15352050 None:intergenic
AGTGAAAGTAGTAGCGGTAT+CGG 0.469081 2.4:-15352323 MS.gene94587:CDS
CTTCGAATCGGTAAAGAGGC+AGG 0.473218 2.4:+15352293 None:intergenic
AATTCTAGTGAAGAAGGAAA+AGG 0.475804 2.4:-15352131 MS.gene94587:CDS
TTTGTAGATTTCATGAGAGT+GGG 0.483163 2.4:-15350252 MS.gene94587:intron
CATGCTGTTGAGAGGCTTGG+AGG 0.487742 2.4:-15352026 MS.gene94587:CDS
CGAAAATGCCTAGGCTTCGT+TGG 0.491348 2.4:-15352076 MS.gene94587:CDS
ATAATTGATAGAACTAGAAA+AGG 0.502223 2.4:+15350030 None:intergenic
ATTCTAGTGAAGAAGGAAAA+GGG 0.515576 2.4:-15352130 MS.gene94587:CDS
AACGAAGAAGCCGTGGACGA+TGG 0.526235 2.4:-15352248 MS.gene94587:CDS
ATCCTTGTGTACCATAGAGT+TGG 0.526480 2.4:+15349881 None:intergenic
AGGAAAAGGGCGTGGAAGTA+CGG 0.529396 2.4:-15352117 MS.gene94587:CDS
AAAATAGAGCAATGCAAGGA+AGG 0.540544 2.4:-15350749 MS.gene94587:CDS
GTACACAATGTTTGGTTCTG+AGG 0.540563 2.4:-15349975 MS.gene94587:intron
TATGATGGTTGTTTCAGTAG+AGG 0.540634 2.4:+15350663 None:intergenic
ATTGTGTACTCAGTGAAGAT+AGG 0.541781 2.4:+15349989 None:intergenic
GAACTAGAAAAGGTGCTCCA+TGG 0.547694 2.4:+15350040 None:intergenic
TCACTCTTGACATCTTTGCT+AGG 0.551418 2.4:+15352341 None:intergenic
GCTTTGATTTCATTATATGA+TGG 0.554601 2.4:+15350648 None:intergenic
TCAGGAGTCCAACGAAGCCT+AGG 0.559435 2.4:+15352068 None:intergenic
AATGAGATATCATCACAAGA+AGG 0.560760 2.4:-15352173 MS.gene94587:CDS
AAGGGCGTGGAAGTACGGTT+AGG 0.570454 2.4:-15352112 MS.gene94587:CDS
ATGAGATATCATCACAAGAA+GGG 0.586610 2.4:-15352172 MS.gene94587:CDS
ATGGATATGTATGGACACTT+TGG 0.587338 2.4:-15350717 MS.gene94587:CDS
AGTGAAGAAGGAAAAGGGCG+TGG 0.587852 2.4:-15352125 MS.gene94587:CDS
ATTAACTGGAGAACTAACTT+GGG 0.599704 2.4:+15351417 None:intergenic
ATGATCATCTCCATCGTCCA+CGG 0.603158 2.4:+15352238 None:intergenic
CTTCAGATCAAGTTCAGTGT+GGG 0.604465 2.4:-15350206 MS.gene94587:CDS
ATGTGAGGTCGAAAATGCCT+AGG 0.605149 2.4:-15352085 MS.gene94587:CDS
TTGTTGCTTATTTCACCACA+AGG 0.610333 2.4:+15352194 None:intergenic
ATGCTGTTGAGAGGCTTGGA+GGG 0.612873 2.4:-15352025 MS.gene94587:CDS
GTCAAGAGTGAAAGTAGTAG+CGG 0.626941 2.4:-15352329 MS.gene94587:CDS
AAGCTTGATGAGTCTGGCCA+AGG 0.633707 2.4:-15350907 MS.gene94587:intron
CGATTTAAACGAAGAAGCCG+TGG 0.635364 2.4:-15352255 MS.gene94587:CDS
GGCCAACTCTATGGTACACA+AGG 0.637570 2.4:-15349883 MS.gene94587:CDS
TGTTTCAGTAGAGGAGACGA+TGG 0.646955 2.4:+15350672 None:intergenic
CTCCAGTTAATGAATGTGAG+AGG 0.648001 2.4:-15351405 MS.gene94587:CDS
GTTTCAGTAGAGGAGACGAT+GGG 0.648534 2.4:+15350673 None:intergenic
TGTTGCTTATTTCACCACAA+GGG 0.657001 2.4:+15352195 None:intergenic
GTGATAAGTGAAGGCCCTTG+TGG 0.681709 2.4:-15352209 MS.gene94587:CDS
TCTTCAGATCAAGTTCAGTG+TGG 0.702689 2.4:-15350207 MS.gene94587:CDS
CATGTGATAGTGATAAGTGA+AGG 0.715293 2.4:-15352218 MS.gene94587:CDS
GTACGGTTAGGCAATATGTG+AGG 0.731217 2.4:-15352100 MS.gene94587:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAATAAAAGAATAAAA+GGG + chr2.4:15351175-15351194 None:intergenic 10.0%
!! TATATAAGAAAAATATGTAA+TGG + chr2.4:15351880-15351899 None:intergenic 10.0%
!!! AATTTAATGTATTTATTTTG+AGG - chr2.4:15350759-15350778 MS.gene94587:CDS 10.0%
!!! ATTTAATGTATTTATTTTGA+GGG - chr2.4:15350760-15350779 MS.gene94587:CDS 10.0%
!! ACATAATTTAGTGTAATTAT+AGG + chr2.4:15351046-15351065 None:intergenic 15.0%
!! ATAGATATACTTAACTATAT+AGG - chr2.4:15352333-15352352 MS.gene94587:CDS 15.0%
!! CACAAAAATAAAAGAATAAA+AGG + chr2.4:15351176-15351195 None:intergenic 15.0%
!! TAGATATACTTAACTATATA+GGG - chr2.4:15352334-15352353 MS.gene94587:CDS 15.0%
!!! AAATAGAAACATTTAAAACA+TGG - chr2.4:15351925-15351944 MS.gene94587:intron 15.0%
!!! CGTTTTAATTATGATTTTTT+TGG - chr2.4:15351285-15351304 MS.gene94587:intron 15.0%
!!! TTTAATTATGATTTTTTTGG+AGG - chr2.4:15351288-15351307 MS.gene94587:intron 15.0%
!! AATAATAATTCTAGTGAAGA+AGG - chr2.4:15350101-15350120 MS.gene94587:CDS 20.0%
!! ACATTAAATGATTGAATGTT+GGG + chr2.4:15351736-15351755 None:intergenic 20.0%
!! AGATTAATTGTGTTTGTAAT+GGG - chr2.4:15351140-15351159 MS.gene94587:intron 20.0%
!! AGTAATAGTGCAAAATATTT+GGG + chr2.4:15351834-15351853 None:intergenic 20.0%
!! ATAATTGATAGAACTAGAAA+AGG + chr2.4:15352211-15352230 None:intergenic 20.0%
!! CACTTAATCTTATATAGATA+TGG - chr2.4:15350720-15350739 MS.gene94587:CDS 20.0%
!! CATAAATTTATCATTACCTT+TGG - chr2.4:15350272-15350291 MS.gene94587:intron 20.0%
!! GGTAATATATATTCTTGTAT+AGG - chr2.4:15350889-15350908 MS.gene94587:intron 20.0%
!! TAACAATATTGGATATATGT+AGG - chr2.4:15350791-15350810 MS.gene94587:intron 20.0%
!! TAGATTAATTGTGTTTGTAA+TGG - chr2.4:15351139-15351158 MS.gene94587:intron 20.0%
!! TAGTAATAGTGCAAAATATT+TGG + chr2.4:15351835-15351854 None:intergenic 20.0%
!! TTCACTTAAAAACTTATAGA+AGG + chr2.4:15352302-15352321 None:intergenic 20.0%
!!! TGATTTTCTCACATTATTAA+CGG - chr2.4:15351065-15351084 MS.gene94587:intron 20.0%
!!! TGATTTTGCTAACAATATTA+AGG + chr2.4:15351369-15351388 None:intergenic 20.0%
! AAAAATGAGAAACAGTTGAT+AGG + chr2.4:15350665-15350684 None:intergenic 25.0%
! AATCAAAAAGCTTATCTCAA+GGG - chr2.4:15352151-15352170 MS.gene94587:CDS 25.0%
! AATTCAGAGATCAATATTGT+CGG + chr2.4:15350514-15350533 None:intergenic 25.0%
! ACAAAAGATAAATGAAGATC+AGG + chr2.4:15350191-15350210 None:intergenic 25.0%
! ATATTAAATCATGCATGTGA+TGG + chr2.4:15351437-15351456 None:intergenic 25.0%
! ATCCATATTATAGTAAGAGT+TGG + chr2.4:15350641-15350660 None:intergenic 25.0%
! ATTCAGAATCGTAATACATT+AGG + chr2.4:15350418-15350437 None:intergenic 25.0%
! GAAATAATATTGCACCTATT+AGG - chr2.4:15352100-15352119 MS.gene94587:CDS 25.0%
! GACATTAAATGATTGAATGT+TGG + chr2.4:15351737-15351756 None:intergenic 25.0%
! GATCTCTGAATTATATCTTT+AGG - chr2.4:15350522-15350541 MS.gene94587:intron 25.0%
! TAATGTATTACGATTCTGAA+TGG - chr2.4:15350417-15350436 MS.gene94587:intron 25.0%
! TCCATATTATAGTAAGAGTT+GGG + chr2.4:15350640-15350659 None:intergenic 25.0%
! TTATGAGTTCTGTATTTGTT+GGG - chr2.4:15350311-15350330 MS.gene94587:intron 25.0%
! TTCACATCTATTTGATGTAA+AGG - chr2.4:15352065-15352084 MS.gene94587:CDS 25.0%
! TTGATTTATGAACAACACTT+AGG - chr2.4:15350917-15350936 MS.gene94587:CDS 25.0%
!! AAAATGAGAAACAGTTGATA+GGG + chr2.4:15350664-15350683 None:intergenic 25.0%
!! GCTTTGATTTCATTATATGA+TGG + chr2.4:15351593-15351612 None:intergenic 25.0%
!!! GGGTTTTTAGTTAACAATAT+TGG - chr2.4:15350780-15350799 MS.gene94587:intron 25.0%
!!! TTAATTTGTGTGTTTTCTAC+CGG - chr2.4:15350569-15350588 MS.gene94587:intron 25.0%
!!! TTGAGATAAGCTTTTTGATT+CGG + chr2.4:15352151-15352170 None:intergenic 25.0%
!!! TTGCATTGCTCTATTTTTTT+GGG + chr2.4:15351486-15351505 None:intergenic 25.0%
AAAGAAAAAGACATTCCCAA+AGG + chr2.4:15351244-15351263 None:intergenic 30.0%
AAGAAAAAGACATTCCCAAA+GGG + chr2.4:15351243-15351262 None:intergenic 30.0%
AATGAGATATCATCACAAGA+AGG - chr2.4:15350065-15350084 MS.gene94587:CDS 30.0%
AATTCTAGTGAAGAAGGAAA+AGG - chr2.4:15350107-15350126 MS.gene94587:CDS 30.0%
ATCAAAAAGCTTATCTCAAG+GGG - chr2.4:15352152-15352171 MS.gene94587:CDS 30.0%
ATGAGATATCATCACAAGAA+GGG - chr2.4:15350066-15350085 MS.gene94587:CDS 30.0%
ATTAACTGGAGAACTAACTT+GGG + chr2.4:15350824-15350843 None:intergenic 30.0%
ATTATGAATGTGCTAAACGT+TGG - chr2.4:15350363-15350382 MS.gene94587:intron 30.0%
ATTCAGAGATCAATATTGTC+GGG + chr2.4:15350513-15350532 None:intergenic 30.0%
ATTCTAGTGAAGAAGGAAAA+GGG - chr2.4:15350108-15350127 MS.gene94587:CDS 30.0%
CAAAAAAATAGAGCAATGCA+AGG - chr2.4:15351485-15351504 MS.gene94587:intron 30.0%
CATCACATTATGGATATGTA+TGG - chr2.4:15351512-15351531 MS.gene94587:intron 30.0%
CTTATGAGTTCTGTATTTGT+TGG - chr2.4:15350310-15350329 MS.gene94587:intron 30.0%
GAATCAAAAAGCTTATCTCA+AGG - chr2.4:15352150-15352169 MS.gene94587:CDS 30.0%
GATATCATACCCAAACTTTA+GGG + chr2.4:15351714-15351733 None:intergenic 30.0%
TCCCAACTCTTACTATAATA+TGG - chr2.4:15350636-15350655 MS.gene94587:CDS 30.0%
TTTAGTGTAATTATAGGCGT+CGG + chr2.4:15351040-15351059 None:intergenic 30.0%
TTTGTAGATTTCATGAGAGT+GGG - chr2.4:15351986-15352005 MS.gene94587:intron 30.0%
! GAACTCATAAGTTGTTTCAT+TGG + chr2.4:15350301-15350320 None:intergenic 30.0%
! TTTTGTAGATTTCATGAGAG+TGG - chr2.4:15351985-15352004 MS.gene94587:intron 30.0%
!! CTTTAGGAAGTAGTTCTTTT+TGG - chr2.4:15350538-15350557 MS.gene94587:intron 30.0%
!! TAAGGTTCTGAAATATACCT+TGG + chr2.4:15351351-15351370 None:intergenic 30.0%
!! TAGTACCCTAAAGTTTTGTA+GGG + chr2.4:15351803-15351822 None:intergenic 30.0%
!! TGAGATAAGCTTTTTGATTC+GGG + chr2.4:15352150-15352169 None:intergenic 30.0%
!! TTAGTACCCTAAAGTTTTGT+AGG + chr2.4:15351804-15351823 None:intergenic 30.0%
!!! CTTGCATTGCTCTATTTTTT+TGG + chr2.4:15351487-15351506 None:intergenic 30.0%
AAAATAGAGCAATGCAAGGA+AGG - chr2.4:15351489-15351508 MS.gene94587:intron 35.0%
ACCATACCCTACAAAACTTT+AGG - chr2.4:15351794-15351813 MS.gene94587:intron 35.0%
AGTAAAAAGCTTGATGAGTC+TGG - chr2.4:15351325-15351344 MS.gene94587:intron 35.0%
ATGGATATGTATGGACACTT+TGG - chr2.4:15351521-15351540 MS.gene94587:intron 35.0%
ATTGTGTACTCAGTGAAGAT+AGG + chr2.4:15352252-15352271 None:intergenic 35.0%
CATTAACTGGAGAACTAACT+TGG + chr2.4:15350825-15350844 None:intergenic 35.0%
CCATACCCTACAAAACTTTA+GGG - chr2.4:15351795-15351814 MS.gene94587:intron 35.0%
GGATATCATACCCAAACTTT+AGG + chr2.4:15351715-15351734 None:intergenic 35.0%
TCTCACATTATTAACGGTGT+CGG - chr2.4:15351071-15351090 MS.gene94587:intron 35.0%
TTATCTCAAGGGGATGATAA+TGG - chr2.4:15352162-15352181 MS.gene94587:CDS 35.0%
TTCACTGAGTACACAATGTT+TGG - chr2.4:15352255-15352274 MS.gene94587:CDS 35.0%
TTCAGAGATCAATATTGTCG+GGG + chr2.4:15350512-15350531 None:intergenic 35.0%
! AACGAACGTTTTCTTCGAAT+CGG + chr2.4:15349960-15349979 None:intergenic 35.0%
! ACTCATCAAGCTTTTTACTC+CGG + chr2.4:15351324-15351343 None:intergenic 35.0%
! ATGGTGCAAAACATTTTCCA+TGG - chr2.4:15352181-15352200 MS.gene94587:CDS 35.0%
! CATGTGATAGTGATAAGTGA+AGG - chr2.4:15350020-15350039 MS.gene94587:CDS 35.0%
! GATGTAGTATTTTCCTCTCT+TGG - chr2.4:15350441-15350460 MS.gene94587:intron 35.0%
! TATGATGGTTGTTTCAGTAG+AGG + chr2.4:15351578-15351597 None:intergenic 35.0%
! TGTTGCTTATTTCACCACAA+GGG + chr2.4:15350046-15350065 None:intergenic 35.0%
! TTGTTGCTTATTTCACCACA+AGG + chr2.4:15350047-15350066 None:intergenic 35.0%
! TTTTCTTCGAATCGGTAAAG+AGG + chr2.4:15349952-15349971 None:intergenic 35.0%
!!! AGTAGTTCTTTTTGGTGTCA+TGG - chr2.4:15350546-15350565 MS.gene94587:intron 35.0%
AACCCTTGGAAACATCGAAT+AGG + chr2.4:15351410-15351429 None:intergenic 40.0%
AATATTGTCGGGGAGTTCAA+TGG + chr2.4:15350502-15350521 None:intergenic 40.0%
ACATGTGAAGAGTCATTTGC+AGG - chr2.4:15350868-15350887 MS.gene94587:intron 40.0%
ACTATATAGGGCCAACTCTA+TGG - chr2.4:15352346-15352365 MS.gene94587:CDS 40.0%
ACTTCCGAACCCTAAAGTTT+GGG - chr2.4:15351702-15351721 MS.gene94587:intron 40.0%
AGTGAAAGTAGTAGCGGTAT+CGG - chr2.4:15349915-15349934 MS.gene94587:intron 40.0%
AGTTGAGAAACATGCCCTTT+GGG - chr2.4:15351226-15351245 MS.gene94587:intron 40.0%
ATCCTTGTGTACCATAGAGT+TGG + chr2.4:15352360-15352379 None:intergenic 40.0%
CTCCAGTTAATGAATGTGAG+AGG - chr2.4:15350833-15350852 MS.gene94587:intron 40.0%
CTTACTTGGCTAGACCTAAT+AGG + chr2.4:15352117-15352136 None:intergenic 40.0%
CTTCAGATCAAGTTCAGTGT+GGG - chr2.4:15352032-15352051 MS.gene94587:CDS 40.0%
GCACATACACTCCTTTGATT+AGG - chr2.4:15350982-15351001 MS.gene94587:intron 40.0%
GTAAGAGTTGGGACGTTAAA+AGG + chr2.4:15350629-15350648 None:intergenic 40.0%
GTCAAGAGTGAAAGTAGTAG+CGG - chr2.4:15349909-15349928 MS.gene94587:intron 40.0%
GTCCTCTCACATTCATTAAC+TGG + chr2.4:15350838-15350857 None:intergenic 40.0%
TCAAAGCTCATGACACTTCA+AGG - chr2.4:15351606-15351625 MS.gene94587:intron 40.0%
TCACTCTTGACATCTTTGCT+AGG + chr2.4:15349900-15349919 None:intergenic 40.0%
TCTTCAGATCAAGTTCAGTG+TGG - chr2.4:15352031-15352050 MS.gene94587:CDS 40.0%
TGAACAACACTTAGGAATCG+AGG - chr2.4:15350925-15350944 MS.gene94587:CDS 40.0%
TGCCTATTCGATGTTTCCAA+GGG - chr2.4:15351405-15351424 MS.gene94587:CDS 40.0%
! CGGGTAGTAATTGACTTACT+TGG + chr2.4:15352131-15352150 None:intergenic 40.0%
! GTATTTTCCTCTCTTGGTCT+TGG - chr2.4:15350447-15350466 MS.gene94587:intron 40.0%
!! CATACCCAAACTTTAGGGTT+CGG + chr2.4:15351709-15351728 None:intergenic 40.0%
!! CATGTGATGGATAAAACCCT+TGG + chr2.4:15351424-15351443 None:intergenic 40.0%
!! CCCTAAAGTTTTGTAGGGTA+TGG + chr2.4:15351798-15351817 None:intergenic 40.0%
!! GTACACAATGTTTGGTTCTG+AGG - chr2.4:15352263-15352282 MS.gene94587:CDS 40.0%
!! TTTTGGAGGTTCAGATGTAC+CGG - chr2.4:15351302-15351321 MS.gene94587:intron 40.0%
ATGATCATCTCCATCGTCCA+CGG + chr2.4:15350003-15350022 None:intergenic 45.0%
ATGTGAGGTCGAAAATGCCT+AGG - chr2.4:15350153-15350172 MS.gene94587:CDS 45.0%
CAATGTTCCAAGACCAAGAG+AGG + chr2.4:15350457-15350476 None:intergenic 45.0%
CACTTCCGAACCCTAAAGTT+TGG - chr2.4:15351701-15351720 MS.gene94587:intron 45.0%
CATTAATCAACCCCCTGAAC+TGG - chr2.4:15350593-15350612 MS.gene94587:intron 45.0%
CGATTTAAACGAAGAAGCCG+TGG - chr2.4:15349983-15350002 MS.gene94587:CDS 45.0%
GAGTTGAGAAACATGCCCTT+TGG - chr2.4:15351225-15351244 MS.gene94587:intron 45.0%
GTACGGTTAGGCAATATGTG+AGG - chr2.4:15350138-15350157 MS.gene94587:CDS 45.0%
GTCAGTGTTTGTGTCGTATC+CGG - chr2.4:15351097-15351116 MS.gene94587:intron 45.0%
GTGCCTATTCGATGTTTCCA+AGG - chr2.4:15351404-15351423 MS.gene94587:CDS 45.0%
GTTTCAGTAGAGGAGACGAT+GGG + chr2.4:15351568-15351587 None:intergenic 45.0%
TGAAGCATGAGCACAAACAC+CGG + chr2.4:15351119-15351138 None:intergenic 45.0%
TGTTTCAGTAGAGGAGACGA+TGG + chr2.4:15351569-15351588 None:intergenic 45.0%
! CTTTTGTGCATGCTGTTGAG+AGG - chr2.4:15350204-15350223 MS.gene94587:CDS 45.0%
! GTTGTTTCATTGGTCGCCAA+AGG + chr2.4:15350291-15350310 None:intergenic 45.0%
! TCAGGGGGTTGATTAATGTC+CGG + chr2.4:15350591-15350610 None:intergenic 45.0%
!! CTCTCTTGGTCTTGGAACAT+TGG - chr2.4:15350455-15350474 MS.gene94587:intron 45.0%
!! GAACTAGAAAAGGTGCTCCA+TGG + chr2.4:15352201-15352220 None:intergenic 45.0%
!! GCAAGGAAGGCATCACATTA+TGG - chr2.4:15351502-15351521 MS.gene94587:intron 45.0%
!! GTAATTATAGGCGTCGGTGT+CGG + chr2.4:15351034-15351053 None:intergenic 45.0%
AAGCTTGATGAGTCTGGCCA+AGG - chr2.4:15351331-15351350 MS.gene94587:intron 50.0%
ACTGGGACACGCCTAATCAA+AGG + chr2.4:15350996-15351015 None:intergenic 50.0%
AGTGAAGAAGGAAAAGGGCG+TGG - chr2.4:15350113-15350132 MS.gene94587:CDS 50.0%
AGTGTCAAGACCAGTTCAGG+GGG + chr2.4:15350606-15350625 None:intergenic 50.0%
ATGCTGTTGAGAGGCTTGGA+GGG - chr2.4:15350213-15350232 MS.gene94587:CDS 50.0%
CGAAAATGCCTAGGCTTCGT+TGG - chr2.4:15350162-15350181 MS.gene94587:CDS 50.0%
CTTCGAATCGGTAAAGAGGC+AGG + chr2.4:15349948-15349967 None:intergenic 50.0%
GAGTGTCAAGACCAGTTCAG+GGG + chr2.4:15350607-15350626 None:intergenic 50.0%
GGCCAACTCTATGGTACACA+AGG - chr2.4:15352355-15352374 MS.gene94587:CDS 50.0%
GTGATAAGTGAAGGCCCTTG+TGG - chr2.4:15350029-15350048 MS.gene94587:CDS 50.0%
! AGGAAAAGGGCGTGGAAGTA+CGG - chr2.4:15350121-15350140 MS.gene94587:CDS 50.0%
! GGAGTGTCAAGACCAGTTCA+GGG + chr2.4:15350608-15350627 None:intergenic 50.0%
!! AGGAGTGTCAAGACCAGTTC+AGG + chr2.4:15350609-15350628 None:intergenic 50.0%
AACGAAGAAGCCGTGGACGA+TGG - chr2.4:15349990-15350009 MS.gene94587:CDS 55.0%
CATGCTGTTGAGAGGCTTGG+AGG - chr2.4:15350212-15350231 MS.gene94587:CDS 55.0%
GATTAGGCGTGTCCCAGTGT+TGG - chr2.4:15350998-15351017 MS.gene94587:intron 55.0%
GGACACACGTGTCCAACACT+GGG + chr2.4:15351013-15351032 None:intergenic 55.0%
GTGCATGCTGTTGAGAGGCT+TGG - chr2.4:15350209-15350228 MS.gene94587:CDS 55.0%
TCAGGAGTCCAACGAAGCCT+AGG + chr2.4:15350173-15350192 None:intergenic 55.0%
! AAGGGCGTGGAAGTACGGTT+AGG - chr2.4:15350126-15350145 MS.gene94587:CDS 55.0%
CGGACACACGTGTCCAACAC+TGG + chr2.4:15351014-15351033 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 15349879 15352381 15349879 ID=MS.gene94587
chr2.4 mRNA 15349879 15352381 15349879 ID=MS.gene94587.t1;Parent=MS.gene94587
chr2.4 exon 15352018 15352381 15352018 ID=MS.gene94587.t1.exon1;Parent=MS.gene94587.t1
chr2.4 CDS 15352018 15352381 15352018 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
chr2.4 exon 15351371 15351447 15351371 ID=MS.gene94587.t1.exon2;Parent=MS.gene94587.t1
chr2.4 CDS 15351371 15351447 15351371 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
chr2.4 exon 15350908 15350944 15350908 ID=MS.gene94587.t1.exon3;Parent=MS.gene94587.t1
chr2.4 CDS 15350908 15350944 15350908 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
chr2.4 exon 15350633 15350783 15350633 ID=MS.gene94587.t1.exon4;Parent=MS.gene94587.t1
chr2.4 CDS 15350633 15350783 15350633 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
chr2.4 exon 15349976 15350267 15349976 ID=MS.gene94587.t1.exon5;Parent=MS.gene94587.t1
chr2.4 CDS 15349976 15350267 15349976 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
chr2.4 exon 15349879 15349905 15349879 ID=MS.gene94587.t1.exon6;Parent=MS.gene94587.t1
chr2.4 CDS 15349879 15349905 15349879 ID=cds.MS.gene94587.t1;Parent=MS.gene94587.t1
Gene Sequence

>MS.gene94587

ATGGCGGAGATTCACATACCTAGCAAAGATGTCAAGAGTGAAAGTAGTAGCGGTATCGGAGCAAAACCTGCCTCTTTACCGATTCGAAGAAAACGTTCGTTCTTCGATTTAAACGAAGAAGCCGTGGACGATGGAGATGATCATGTGATAGTGATAAGTGAAGGCCCTTGTGGTGAAATAAGCAACAATGAGATATCATCACAAGAAGGGAATTTGAGTAGCAATAATAATTCTAGTGAAGAAGGAAAAGGGCGTGGAAGTACGGTTAGGCAATATGTGAGGTCGAAAATGCCTAGGCTTCGTTGGACTCCTGATCTTCATTTATCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGGCAAGAAAGTAAGTGTGACTCATTTCATTCTTATGAACATAAATTTATCATTACCTTTGGCGACCAATGAAACAACTTATGAGTTCTGTATTTGTTGGGTTCAAGTGTGAGCGATTAGTCATACATCAATTATGAATGTGCTAAACGTTGGATATATAAGATCGAAAGATGACTTATATACCTAATGTATTACGATTCTGAATGGAGATGTAGTATTTTCCTCTCTTGGTCTTGGAACATTGGTCATTTGTTGTTCTCGATGCTCCATTGAACTCCCCGACAATATTGATCTCTGAATTATATCTTTAGGAAGTAGTTCTTTTTGGTGTCATGGTTAATTTGTGTGTTTTCTACCGGACATTAATCAACCCCCTGAACTGGTCTTGACACTCCTTTTAACGTCCCAACTCTTACTATAATATGGATCCCTATCAACTGTTTCTCATTTTTGTAATTTCTTTGTTTATGAGTTGAAGTACTATTTACACTTAATCTTATATAGATATGGATTTGCATTATTCTAAAATTTAATGTATTTATTTTGAGGGTTTTTAGTTAACAATATTGGATATATGTAGGAGCAACACCCAAGTTAGTTCTCCAGTTAATGAATGTGAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGGTAATATATATTCTTGTATAGGAGAAGTTGATTTATGAACAACACTTAGGAATCGAGGTTACACAATTTATTGCTTAATTAACTGTTATGAAGCACATACACTCCTTTGATTAGGCGTGTCCCAGTGTTGGACACGTGTGTCCGACACCGACGCCTATAATTACACTAAATTATGTGATTTTCTCACATTATTAACGGTGTCGGCGTGTCAGTGTTTGTGTCGTATCCGGTGTTTGTGCTCATGCTTCATAGATTAATTGTGTTTGTAATGGGTTAGAGTATCCCTTTTATTCTTTTATTTTTGTGTCACTTTTGCGAATACAAAATACTATGTTGAGTTGAGAAACATGCCCTTTGGGAATGTCTTTTTCTTTTGTATTCTATCTTTCTTATAACGTTTTAATTATGATTTTTTTGGAGGTTCAGATGTACCGGAGTAAAAAGCTTGATGAGTCTGGCCAAGGTATATTTCAGAACCTTAATATTGTTAGCAAAATCATGTTTTATACGAAGTGTGCCTATTCGATGTTTCCAAGGGTTTTATCCATCACATGCATGATTTAATATTCATTTTTGTTTTATTTCAGTTTTGTCCCAAAAAAATAGAGCAATGCAAGGAAGGCATCACATTATGGATATGTATGGACACTTTGGTGTTGAAAGCAACTATTTGCACCCATCGTCTCCTCTACTGAAACAACCATCATATAATGAAATCAAAGCTCATGACACTTCAAGGTATAGTATCTAAAAAAAACTTTAAGATTATTTATATTTTTATGCACTACAAATGTAATTATATTTTGATGTACACTTCCGAACCCTAAAGTTTGGGTATGATATCCCAACATTCAATCATTTAATGTCATATTTTTTTTATATTTAACTATTTTAAATTAATTTTACCATACCCTACAAAACTTTAGGGTACTAAAGCATTTCCCAAATATTTTGCACTATTACTAATCTAAAACAATACAATGAAAACCATTACATATTTTTCTTATATAATTATTATAGTGAAAATTTGAAATAAAATAGAAACATTTAAAACATGGATATGAAATTAATTTTGATAATTCTTTAATGTGTTAATTTTGTAGATTTCATGAGAGTGGGCTTTTCAATAATAATCACGTGATCTTCAGATCAAGTTCAGTGTGGGACAAAGATTTTTCACATCTATTTGATGTAAAGGATGCAATTACAAGAAATAATATTGCACCTATTAGGTCTAGCCAAGTAAGTCAATTACTACCCGAATCAAAAAGCTTATCTCAAGGGGATGATAATGGTGCAAAACATTTTCCATGGAGCACCTTTTCTAGTTCTATCAATTATCAACACAGCTCTTGCAGTCCTATCTTCACTGAGTACACAATGTTTGGTTCTGAGGTAATTTTGTATGTCCTTCTATAAGTTTTTAAGTGAAATTTATTTCAGATAGATATACTTAACTATATAGGGCCAACTCTATGGTACACAAGGATGA
Protein sequence

>MS.gene94587.t1

MAEIHIPSKDVKSESSSGIGAKPASLPIRRKRSFFDLNEEAVDDGDDHVIVISEGPCGEISNNEISSQEGNLSSNNNSSEEGKGRGSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQKNRAMQGRHHIMDMYGHFGVESNYLHPSSPLLKQPSYNEIKAHDTSRFHESGLFNNNHVIFRSSSVWDKDFSHLFDVKDAITRNNIAPIRSSQVSQLLPESKSLSQGDDNGAKHFPWSTFSSSINYQHSSCSPIFTEYTMFGSEGQLYGTQG