AlfalfaGEDB | MS.gene051044

M. sativa cultivar XinJiangDaYe / MS.gene051044

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016787 GO:0016788
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051044.t1	XP_003627418.1	95	377	19	0	1	377	1	377	8.70E-211	742.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051044.t1	Q9SSA7	54.0	367	162	4	14	375	19	383	6.9e-108	392.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051044.t1	G7L940	95.0	377	19	0	1	377	1	377	6.3e-211	742.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene051044	-0.828735	7.62E-55	-1.69E-46
MS.gene049259	MS.gene051044	0.839795	1.28E-57	-1.69E-46
MS.gene049281	MS.gene051044	0.845369	4.24E-59	-1.69E-46
MS.gene049320	MS.gene051044	-0.801818	7.53E-49	-1.69E-46
MS.gene049402	MS.gene051044	0.811206	7.86E-51	-1.69E-46
MS.gene049611	MS.gene051044	0.803028	4.24E-49	-1.69E-46
MS.gene049634	MS.gene051044	0.817878	2.62E-52	-1.69E-46
MS.gene049710	MS.gene051044	0.847952	8.35E-60	-1.69E-46
MS.gene05015	MS.gene051044	0.812756	3.61E-51	-1.69E-46
MS.gene050381	MS.gene051044	0.853103	2.98E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene01536	MS.gene051044	PPI
MS.gene01537	MS.gene051044	PPI
MS.gene051044	MS.gene002555	PPI
MS.gene051044	MS.gene01535	PPI
MS.gene051044	MS.gene071802	PPI
MS.gene051044	MS.gene004229	PPI
MS.gene051044	MS.gene54327	PPI
MS.gene051044	MS.gene004227	PPI
MS.gene051044	MS.gene92254	PPI
MS.gene051044	MS.gene002553	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051044.t1	MTR_8g022810	94.960	377	19	0	1	377	1	377	0.0	749
MS.gene051044.t1	MTR_8g022810	81.963	377	15	1	1	377	1	324	0.0	625
MS.gene051044.t1	MTR_8g031400	52.059	340	154	4	37	375	33	364	1.41e-119	351
MS.gene051044.t1	MTR_8g031430	49.322	369	174	8	9	375	7	364	4.14e-117	345
MS.gene051044.t1	MTR_8g031420	50.882	340	158	4	37	375	31	362	6.40e-117	344
MS.gene051044.t1	MTR_8g031390	48.257	373	176	7	10	375	1	363	9.61e-114	337
MS.gene051044.t1	MTR_2g044100	48.824	340	169	4	38	375	40	376	7.16e-111	330
MS.gene051044.t1	MTR_8g022790	49.412	340	159	4	37	375	33	360	2.31e-104	312
MS.gene051044.t1	MTR_8g031390	49.693	326	149	6	10	328	1	318	1.59e-101	303
MS.gene051044.t1	MTR_3g005650	34.582	347	206	8	5	347	1	330	3.80e-57	190

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051044.t1	AT1G53920	53.951	367	162	4	14	375	19	383	8.52e-137	395
MS.gene051044.t1	AT5G40990	48.641	368	183	4	12	375	7	372	2.43e-118	348
MS.gene051044.t1	AT1G53940	49.112	338	167	3	41	375	39	374	3.50e-114	337
MS.gene051044.t1	AT3G14225	45.225	356	190	3	23	375	19	372	7.84e-109	324
MS.gene051044.t1	AT3G14225	45.000	360	189	4	23	375	19	376	8.01e-108	321
MS.gene051044.t1	AT1G53990	44.986	369	191	4	10	375	4	363	4.94e-105	314
MS.gene051044.t1	AT1G53940	50.575	261	127	1	41	299	39	299	1.11e-85	262
MS.gene051044.t1	AT1G71120	33.626	342	195	12	41	370	31	352	7.47e-57	190
MS.gene051044.t1	AT5G45950	33.227	313	194	7	41	349	40	341	7.14e-54	182
MS.gene051044.t1	AT5G15720	33.428	353	213	12	30	370	19	361	6.58e-53	179

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Find 75 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGCATGTTGTGGGAG+TGG	0.597943	8.1:+77646585	MS.gene051044:CDS
AAATCATGAAGCAAATCACA+TGG	0.643698	8.1:-77646808	None:intergenic
AAATTCATTGTGGAAAATCT+TGG	0.363391	8.1:+77641155	MS.gene051044:CDS
AACAAGCGCACCTGCTCCAC+CGG	0.496369	8.1:-77642124	None:intergenic
AACAATTGGCAGCTCAAATG+TGG	0.549416	8.1:+77646727	MS.gene051044:CDS
AACCCAATGAAAGTTTATTT+TGG	0.114900	8.1:+77646673	MS.gene051044:CDS
AACTTACTTCAAGTTCCCAA+CGG	0.612237	8.1:+77641364	MS.gene051044:CDS
AATTCACTCCATTGTAGTAT+TGG	0.386892	8.1:-77642095	None:intergenic
ACATAATCAAGCACTCTATG+AGG	0.579542	8.1:+77645419	MS.gene051044:CDS
ACTAGAATAATTCAATCACA+AGG	0.694131	8.1:+77645354	MS.gene051044:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTTAGATGATGATTGACT+TGG	+	chr8.1:77642695-77642714	MS.gene051044:intron	30.0%
AATATTTATCGCTTCGTGTA+TGG	+	chr8.1:77641528-77641547	MS.gene051044:intron	30.0%
AATCAGACATTGTGTAAGTT+TGG	-	chr8.1:77643995-77644014	None:intergenic	30.0%
AATTAATCTCAATTAAGGGG+GGG	+	chr8.1:77644206-77644225	MS.gene051044:intron	30.0%
AATTATGTTATGACGACAAC+AGG	+	chr8.1:77642644-77642663	MS.gene051044:intron	30.0%
AATTCACTCCATTGTAGTAT+TGG	-	chr8.1:77642098-77642117	None:intergenic	30.0%
ACAACCAAGTTAAATCCAAA+AGG	-	chr8.1:77642933-77642952	None:intergenic	30.0%
ACATATGGATCTTAGATGAT+AGG	+	chr8.1:77644978-77644997	MS.gene051044:intron	30.0%
ACTTCAAGAAAGTAACAACT+TGG	+	chr8.1:77644376-77644395	MS.gene051044:CDS	30.0%
AGAATTGGAAAAGCAACTAA+GGG	+	chr8.1:77645449-77645468	MS.gene051044:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	77641146	77646815	77641146	ID=MS.gene051044
chr8.1	mRNA	77641146	77646815	77641146	ID=MS.gene051044.t1;Parent=MS.gene051044
chr8.1	exon	77641146	77641425	77641146	ID=MS.gene051044.t1.exon1;Parent=MS.gene051044.t1
chr8.1	CDS	77641146	77641425	77641146	ID=cds.MS.gene051044.t1;Parent=MS.gene051044.t1
chr8.1	exon	77642043	77642164	77642043	ID=MS.gene051044.t1.exon2;Parent=MS.gene051044.t1
chr8.1	CDS	77642043	77642164	77642043	ID=cds.MS.gene051044.t1;Parent=MS.gene051044.t1
chr8.1	exon	77644348	77644578	77644348	ID=MS.gene051044.t1.exon3;Parent=MS.gene051044.t1
chr8.1	CDS	77644348	77644578	77644348	ID=cds.MS.gene051044.t1;Parent=MS.gene051044.t1
chr8.1	exon	77645285	77645540	77645285	ID=MS.gene051044.t1.exon4;Parent=MS.gene051044.t1
chr8.1	CDS	77645285	77645540	77645285	ID=cds.MS.gene051044.t1;Parent=MS.gene051044.t1
chr8.1	exon	77646571	77646815	77646571	ID=MS.gene051044.t1.exon5;Parent=MS.gene051044.t1
chr8.1	CDS	77646571	77646815	77646571	ID=cds.MS.gene051044.t1;Parent=MS.gene051044.t1

Gene Sequence

>MS.gene051044

ATGAAGATGAAATTCATTGTGGAAAATCTTGGAGTCTCTATTTTCTTCAAAGTTTTCCTTATTATATCTCTTGTATCTCAAACCTTTGGAAGCAAAACAGATTATTATAGAAGCAACAAAGCCTTGTTCATTTTTGGGGATTCATTCTTAGATGCTGGCAATAACAATTACATAAACACTACAAGTCTTGACCAAGCAAATTTCTTGCCCTATGGAGAAACTTACTTCAAGTTCCCAACGGGGAGATTCTCTGATGGCCGTTTAATATCAGATTTTATTGGTAAGATTTGCAGATTTTATTAGTAAGATGTGTAAATTTTATATCATTTATACTTATAATGAACTAATTATTTTGACTCGCAATTGTGTTTGAGTTTTAGGTAATATTTATCGCTTCGTGTATGGAAAAAACATTAATTAAAATTTGTTATAGCTTACTTAATATTTTCCATTTCTTAGAAACGAAAGAGCTATGTCTAAAGTTCCGTAAGTTTAGCTTAATTGGTAAAAACATTGTATTATATATGTATGTGTCGCGGTCTGAACCCCATACATCCACTTAGTCACCAAAAAAATATGAATTTTTAACCACTAAATTACTTGAGAAGAAAAAAAATAGTTATGTCCAAGTAATTTGATCGAAGAAGAGTGTTAGAAACACTCTCTTTTTGACACTCTTCCTATCACTCACTCTCTTGTTAAGTGAAATCAATATGAGATCCACACTTTAAAAATAAATCTTATGTAAAATGGTGAGTTTCCACGTGAATTTTATCAAATAAAAAATGAGTGTTCAAAAGAAAATGTTTTTACAATGTCTTTTTTTATCGAAATCAATTTAATTATTTAAAACAAGATTCTCTACTCATGTCTTTTGTCATACTTTTTGTTTTCTAGCTGAATACGTAAATATTCCACTGGTTCCGCCATTTCTACAACCTGACAATAACCAATACTACAATGGAGTGAATTTTGCATCCGGTGGAGCAGGTGCGCTTGTTGAAACTTTCCAAGGGTCGGTATGTCTATTTCATTCAATTATAATTAGTGTTTTAACTAAGATTTTTGTGGAGATATATAAAATGAATGACTAAATATATAGTGATTAATTGTTCGTAAAAAAAATAGTATATAGTAATTACTCAATTATATTCATGTCAACTTTATCAGGCTATGCGCATGGCATATGCTTGCCACGTTAATGTCGGTGAAGCACTAACAGTCATCTTAACTGACGTAGCAGTGCTATAGTTGGTAGATTATTATTATTTTTCAAAATATTTAATGTTTAGAAATTCACTTTTAAACTGAATAAATAAAGAGTGTTGGTAGGGGTGGCAAAACGGGCTTGACCCGCCGGACTGACCCGTTTGGCTCGCTATTTTTGGCGGGTTGGGTCGAAGTTTTGAACTTTTTTTTACAGTTGGCTCGGCTCGTCTCTTTGAAAACGGGGCGGGCACGAGGCGGTGCAGGGCGACCCGCTTAACTCGTTGGAAACAATTATGTTATGACGACAACAGGAGGAGGAAGAGGTGCACCATATATTCATAACTTAGATGATGATTGACTTGGAGTTGATTGACTTAATAAAAGAATTATGTTGCTGATGCGATTATTTTGAGACTTGTTTTATGCTTTTGGATTTATCTTGGTTGTTTAGTTTATTTTGAGACTTATTTTATGCTTTTGGATTTATTTTGGTTGTTGGATTTATTTTGGAACTTATTTTATGTTTTTCGATTTATCTTGGTTGTTGAGTTTATTTATTTTGAGACTTATTTTTTCCTTTTGGATTTAACTTGGTTGTTGGATTTATTTTATGATTTGTTTTATGTTGCACATTTACCTTATTTTGCTATTAATTATAATGTTGAATTCGATAATTTGTTAATTATCTTGTTTTTCACAAATTTATTTGCTACTTATTCTTTTATATTTTTTTTATTATAAAAGCAACATAGTTTTTTTTGTGACAATTAAGTTGTTAAAAAAAAAAGTTTTTTGTTTAGCGGGCCGGCCCGCCAACTCGCAAGTCCGCCACTAAACGGGCGAGATGAGATTTTGGACTCGGTTAGTAATTTTGACTCAGCTCGTCTCGTTTCGTTTTTAGCGGGCTTAGATGGGGAGGGCCTAAACGAGACGGACCGATCCGCTTTGCCATCCCTAAGTGTTGGTGTTTAAACCCTGACGGTTATAATTATAAAATATTCGTATCAACTAAGATAAGTTGAACATGCTTTAGTAAATTAATTGGAAAATGCTAGATGTATGTTTCAACGCTCATTTAACACTTCAATTGATCTATATTTATCTTTTTCCATTATATCAGCAACTTATTACATCTATTACATTATTTTCTTTCCTTTTTCTCTCAAGGTGTTTATTCCCATATGGACAAATATTTTCCTTCTTTAATTATGTCCACAAACTTATTGAAGTGGTTGTCGTATGGTGATAGGTCGAAGATCAAGTAAATAAGTACTTAAAACAACAAACCAATAGTAGATGAACGTTTTTGTCTTTCAATTCTCATTCTTTCCACATTTTAATTCGTTCATAGAATTTCTCATAATGGTGATAGGTCAAAGATTAAGTAAATCAGTACTTCAAACTACAAACTACAAACCAATAGTATATGATCATTTTTGAGTGAATAAAGTTATGATGGTTGGTTCTCAAGTGAGTGAGAAGTCCTATATTGGATGTAAATGTAAATGTTAAACAATACTCCATATCACTGAGATAACTCATATACGTAATGTATGTATTATGATCTAGTTTAAGTTTTGTCAAGAAGTTAGTTTTAATGTGTCAACAATTTCTTGTCAATATACCGAATGACAACTCCAAACTTACACAATGTCTGATTTATGTTGAATCATATCCAATATTTGTCGAATTAAAACTGTTGAATTTATGTCTATTGATATTATGATCATTCTTGTCTAACACATAAATAAAATTTCAACTTTTATTATGATCATTATTTTTTTCCAAGACTTATCTCAATTCTTCATGTTTCATAATCAACATAAATTAAACCATTAAGAAAAAGGGATGAATTAATCTCAATTAAGGGGGGGTGCATTTCCCATCAATTAAGTTAACTTCACTTTATTGAAATGCACTACAAGTAGTAGTCAACAATTTTTTTTATTGGATTGCTTAGCAAAATGATGGATTTGTCGTGTCAAATTTTCAGGTAATACCTTTTAAAACACAAGCAAGAAACTTCAAGAAAGTAACAACTTGGTTGAGGCACAAGTTAGGCAGTTCTGATTCCAAAACGTTGTTATCAAATGCTGTCTACATGTTTAGCATCGGATCTAATGATTATCTTAGCCCATTTTTGACAAATTCTGATGTTCTAAAGTATTATTCTCATAAAGAATATGTTGCCATGGTGATTGGTAACTTCACTTCCACTATCAAGGTACAATACATCTTCCTATTTACATTCTTTTTTTTAATTGGAATAAAAAAATTAATCATTAAAATTCGATATAGAAAAATGTTCTCGTTAAGTTACTATGTGAACCTTGCTAGGAATGTGCTACGACCTAGGCTTTACCTGTTTAATATTCTGGGTAAAAAGTGGACGATCCTTTAGGGTTTTGTGGTTTTCCCTATTTATAGAGTTGGTGATATAAGCTTTGTTCCTCGTTGTGGCCTTTATCGTGGCCTACCAACTTGGATAATTGTTACCCCATTTCCATTGTTGCCATCATATCGTGCTCATTTCTGGTATGACCGAGTAAATGCACATGTAACGTTAACCTTTTCATGTGAGTACGCTTGTGTTCGAGCTATGGGTTTTGCTACCTGATGATGGACATATGGATCTTAGATGATAGGGGCCGGGCTAATGTAAATAACTATGACGGTGCGCAATCCCCTAAGCACGAAGCATGTAAAGGAGAAGTGCTTGAGTCAATGTCCTTGGCATTTAAGTTTTATGATAGTCCAATATCTAATTCCTTTCTAAATTATGTGGCAGAATTAATGATAGACTTTATATTTTTGCTCTCAATTTTAATTAATAGTATATGCTTAGAATTTATGATGTTACACAAATTGAAACTTCTTATTTTGGTCATGTGACATTCATGGATCTAATTTATAATTGTTTTAATTTTCAGGAAATACATAAGAGAGGGGCTAAAAAATTTGTGATTTTAAACTTACCACCCTTGGGCTGTCTTCCAGGAACTAGAATAATTCAATCACAAGGAAAAGGTAGCTGCTTAGAAGAGCTTTCATCACTTGCAAGTATACATAATCAAGCACTCTATGAGGTTCACTTAGAATTGGAAAAGCAACTAAGGGGCTTTAAATTCTCTCTCTATGATTTTAACTCGGATCTCACTCATAGGATCAACCATCCCTTAAAATATGGTACTCTCCCTCTCATTTTAAGTTTTCTTTTTCCTTTTTGAAATGATGAATATTTATATTGTTAGTAAGCTATGAAACCTGGATACGGATACGGGTGCGAGTACGATACGATACAGGTACGCGAATACGCGAATTTTTTAAAATTTAGGATAGGATACGGTTAAGATATGTTAACAAAATTTTTATATTAATGCTTATATGTATGTAAAATACTTGAAGAAAATAAACATTGATTAAAAGAATTCAACACAAATTTTATCTAATGTTGATTAACTGAATCACCTCTCTCATTACCTTCGTCCACAAGAAGTATAATTTTAAGTGATTCATCGAGAAACAATTCTAATGATGCATATCTAAAATTGAATCATTTACATCTCTATTGAATGTTTACAACATTGTCTCACTTTTTTACTCTTTATCTTTTTCTAGGATACGTATATGTGAAGTATCTTATAAGTATCGTTGTGTATCTGCGAAGTATTGTATAAGTATCCGTTAAAATATTTTTTAAAAATTTAAATAATTAATTCTGATACTTCATGGGTGCGTATCCGCGAGTATCCGTAGAGTATCGGTATCCGATATGTATCTGATACGGGTACGTCTCTGTTTTGGAGTATCCGGGCTTCATAGTTAGTAAGTGTTAACATTATTCCACGAGTTGGGATCAAACCCTCAAACCTTATCATCACATCATTCCTTAACTCCTCCACCAACCACCAAACCAACCTTATAACCCCTTATTTGAAATATTTGGTATAGTTGCAAAAATATGAAGAGAGGTTAAATTATTTGTTTCGGTATTAATTTTATTCAACCATTAGTTCAAATGGAGATGGATTTAGGTTCAAGTCTTTGCTGGCATTTTTGTAAAATAGATTGTCTTATCTTAGAAATGATCATAATTAATCTTTCATAGTATAACTAAAATAAGATTAAATTACACCTTCATATTCAAATTACTTTTTCTAAAGTATGTAATTTTGTAAATTAATATGTAGAAATTGTGGTTATTAATTTGTTGCAGGCTTTAAGGATGGAAAATCAGCATGTTGTGGGAGTGGTCCATTTAGAGGAGAGTATAGTTGTGGTGGAAAAAGAGGGGAGAAACACTTTGAATTATGCGACAAACCCAATGAAAGTTTATTTTGGGATTCTTACCATCTTACAGAAAGTGCTTACGAACAATTGGCAGCTCAAATGTGGAGTCCTACTGGAAACTCTCATACTATTGGGTCTTACACTATTAAAGATTTCTTTCAAGCCATGTGA

Protein sequence

>MS.gene051044.t1

MKMKFIVENLGVSIFFKVFLIISLVSQTFGSKTDYYRSNKALFIFGDSFLDAGNNNYINTTSLDQANFLPYGETYFKFPTGRFSDGRLISDFIAEYVNIPLVPPFLQPDNNQYYNGVNFASGGAGALVETFQGSVIPFKTQARNFKKVTTWLRHKLGSSDSKTLLSNAVYMFSIGSNDYLSPFLTNSDVLKYYSHKEYVAMVIGNFTSTIKEIHKRGAKKFVILNLPPLGCLPGTRIIQSQGKGSCLEELSSLASIHNQALYEVHLELEKQLRGFKFSLYDFNSDLTHRINHPLKYGFKDGKSACCGSGPFRGEYSCGGKRGEKHFELCDKPNESLFWDSYHLTESAYEQLAAQMWSPTGNSHTIGSYTIKDFFQAM